RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5718
(720 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 97.3 bits (241), Expect = 1e-22
Identities = 107/265 (40%), Positives = 136/265 (51%), Gaps = 67/265 (25%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKFY--------------L 58
AE +I+V+CRFRPLN SE G K+I KF E+ + + K Y +
Sbjct: 3 AECNIKVMCRFRPLNESEVNRGDKYIAKFQG---EDTVVIASKPYAFDRVFQSSTSQEQV 59
Query: 59 FDKVFKP----------------------------------------------NATQEKV 72
++ K
Sbjct: 60 YNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 119
Query: 73 YDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPE 132
DE + + V + + Y+ + L + S + + + + G TERFV P+
Sbjct: 120 MDENLEFHIKVSYFEI--YLDKIRDLLDVSKTNLSVHEDKNRVPYV--KGCTERFVCSPD 175
Query: 133 EVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEK 192
EV + I+EGK+NRH+AVTNMNEHSSRSHS+FLINVKQEN + E+KLSGKLYLVDLAGSEK
Sbjct: 176 EVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEK 235
Query: 193 VSKTGAEGTVLDEAKNINKSLSADG 217
VSKTGAEG VLDEAKNINKSLSA G
Sbjct: 236 VSKTGAEGAVLDEAKNINKSLSALG 260
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 76.6 bits (187), Expect = 1e-15
Identities = 52/270 (19%), Positives = 80/270 (29%), Gaps = 70/270 (25%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSL---------GGKFYLFDKVFKPN 66
+IRV CR RP + E + + I S+ + FDK+F
Sbjct: 2 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQ 61
Query: 67 ATQEKVYDEAAKSIVSVQF----VDADQYMVSVDR-------------------LRSDHQ 103
T V+ E + + S + ++
Sbjct: 62 DTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINK 121
Query: 104 LKASTMCEHSLMHLIVFPG---------ATERFVGKPEEVFEVIEEGKANRHIAVTNMNE 154
LK I + I + + +TN+
Sbjct: 122 LKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTS 181
Query: 155 H-----------------------------SSRSHSVFLINVKQENLENEKKLSGKLYLV 185
SS SHS+F+I++ N + G L LV
Sbjct: 182 CKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLV 241
Query: 186 DLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
DLAGSE+++ + G L E +NINKSLS
Sbjct: 242 DLAGSERINVSQVVGDRLRETQNINKSLSC 271
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 71.1 bits (173), Expect = 9e-14
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGGKF-YLFDKVFKPNATQE 70
++ +SI+VV RFRP N E ++G + IV F S + + FD+VF + Q
Sbjct: 2 SSANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQS 61
Query: 71 KVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMH 116
++D + K V + Y +V K+ TM S+
Sbjct: 62 DIFDFSIKPTVDDIL---NGYNGTVFAYGQTGAGKSYTMMGTSIDD 104
Score = 70.4 bits (171), Expect = 1e-13
Identities = 55/100 (55%), Positives = 70/100 (70%)
Query: 118 IVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKK 177
+ G E +V +EV+EV+ G R +A TNMN+ SSRSHS+F+I + Q+N+E
Sbjct: 166 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSA 225
Query: 178 LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
SG+L+LVDLAGSEKV KTGA G L+EAK INKSLSA G
Sbjct: 226 KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALG 265
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 70.8 bits (172), Expect = 9e-14
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 91 YMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVT 150
Y V L + + EH L+ V ++ V ++ ++++ G R +A T
Sbjct: 147 YCERVRDLLNPKNKGNLRVREHPLLGPYVED-LSKLAVTSYNDIQDLMDSGNKPRTVAAT 205
Query: 151 NMNEHSSRSHSVFLINVKQENLENE----KKLSGKLYLVDLAGSEKVSKTGAEGTVLDEA 206
NMNE SSRSH+VF I Q+ + E + K+ LVDLAGSE+ TGA+GT L E
Sbjct: 206 NMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEG 265
Query: 207 KNINKSLSA 215
NINKSL+
Sbjct: 266 ANINKSLTT 274
Score = 62.7 bits (151), Expect = 5e-11
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 12/98 (12%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG----EENGLSLGGKFYLFDKVFKPN----- 66
S++V R RP N E SK I++ K + FD + +
Sbjct: 2 SVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPED 61
Query: 67 ---ATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSD 101
A+Q++VY + + ++ F + + + + +
Sbjct: 62 INYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAG 99
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 67.7 bits (164), Expect = 9e-13
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 12/123 (9%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKF----------PSGGEENGLSLGGKFYLFDKVFKPN 66
I+VV R RPL+ E+K I+ P + + ++ DKVF
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 67 ATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATER 126
VY+ K ++ + + + S K TM PG +
Sbjct: 62 VDNFTVYENTIKPLIIDLY--ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQY 119
Query: 127 FVG 129
G
Sbjct: 120 AAG 122
Score = 55.8 bits (133), Expect = 7e-09
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 119 VFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKL 178
V V EE+ + +G R I V + N+ SSRSH++ I++K N+
Sbjct: 172 VVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKD---INKNTS 228
Query: 179 SGKLYLVDLAGSEKVSKTGAEG-TVLDEAKNINKSLSA 215
GK+ +DLAGSE+ + T ++ + NIN+SL A
Sbjct: 229 LGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLA 266
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 67.6 bits (164), Expect = 1e-12
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 10/111 (9%)
Query: 1 MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------ENGL 50
M + + E I V R RPLN E ++ PS +
Sbjct: 16 MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTK 75
Query: 51 SLGGKFYLFDKVFKPNATQEKVYDEAAKSIVSVQFVDADQYMVSVDRLRSD 101
L + + FD F A+ E VY A+ +V F + + S
Sbjct: 76 YLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSG 126
Score = 66.8 bits (162), Expect = 2e-12
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 84 QFVDADQYMVSVDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKA 143
V + + ++ KA + G E V ++V ++I G A
Sbjct: 168 LEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSA 227
Query: 144 NRHIAVTNMNEHSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTV- 202
R T N +SSRSH+ F I ++ + +L GK LVDLAG+E+ + T +
Sbjct: 228 CRTSGQTFANSNSSRSHACFQILLRTKG-----RLHGKFSLVDLAGNERGADTSSADRQT 282
Query: 203 LDEAKNINKSLSADG 217
E INKSL A
Sbjct: 283 RMEGAEINKSLLALK 297
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
mitotic kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 65.0 bits (157), Expect = 7e-12
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG-------KFYLFDKVFKPNATQ 69
I+VV R RP N +E KA + IV+ +E + GG K Y FD VF + Q
Sbjct: 2 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 61
Query: 70 EKVYDEAAKSIV 81
VY I+
Sbjct: 62 IDVYRSVVCPIL 73
Score = 56.5 bits (135), Expect = 4e-09
Identities = 52/153 (33%), Positives = 75/153 (49%), Gaps = 6/153 (3%)
Query: 70 EKVYDEAAKSIVSVQFVDADQYMVSVDRL--RSDHQLKASTMCEHSLMHLIVFPGATERF 127
EK+ D + V V ++ + D L SD + + ++ G E
Sbjct: 128 EKLTDNGTEFSVKVSLLEIYNEEL-FDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEIT 186
Query: 128 VGKPEEVFEVIEEGKANRHIAVTNMNEHSSRSHSVFLINVKQENLE---NEKKLSGKLYL 184
V +EV++++E+G A R A T MN +SSRSHSVF + + + E GKL L
Sbjct: 187 VHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNL 246
Query: 185 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSADG 217
VDLAGSE + ++GA EA NIN+SL G
Sbjct: 247 VDLAGSENIGRSGAVDKRAREAGNINQSLLTLG 279
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 60.8 bits (146), Expect = 2e-10
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGG--KFYLFDKVFKPNATQEKVYD 74
IRV CR RPL E A + ++ L K +++D+VF NATQ+ V++
Sbjct: 2 IRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFE 61
Query: 75 EAAKSIVSV 83
+ + S
Sbjct: 62 DTKYLVQSA 70
Score = 58.1 bits (139), Expect = 2e-09
Identities = 45/121 (37%), Positives = 64/121 (52%)
Query: 95 VDRLRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNE 154
VD L + + ++ T + EE+ +I+ G RH T MNE
Sbjct: 137 VDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNE 196
Query: 155 HSSRSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLS 214
SSRSH + + ++ NL+ + GKL VDLAGSE+V K+G+ G L EA++INKSLS
Sbjct: 197 QSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLS 256
Query: 215 A 215
A
Sbjct: 257 A 257
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 53.0 bits (126), Expect = 7e-08
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFI-------VKFPSGGEENGLSLGGKFYLFDKVFKPNATQ 69
IRV CR RP SEE V+ S + +G + + FD+VF P ++Q
Sbjct: 47 IRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQ 106
Query: 70 EKVYDEAAKSI 80
+++ + I
Sbjct: 107 SDIFEMVSPLI 117
Score = 51.8 bits (123), Expect = 1e-07
Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 98 LRSDHQLKASTMCEHSLMHLIVFPGATERFVGKPEEVFEVIEEGKANRHIAVTNMNEHSS 157
L S+ Q + + I TE V P + ++ K NR A T NE SS
Sbjct: 190 LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSS 249
Query: 158 RSHSVFLINVKQENLENEKKLSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSA 215
RSH+V + + + E ++ G + LVDLA S++ T + E KNIN+SLS
Sbjct: 250 RSHAVTKLELIGRHAEKQEISVGSINLVDLA----GSESPKTSTRMTETKNINRSLSE 303
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium
[TaxId: 90371]}
Length = 395
Score = 32.4 bits (72), Expect = 0.19
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 432 LTQENESAKEEVKEVLQALEELAV---NYDQKSQEVETKNKEFETLTEELT--LKQTTLN 486
+ Q E A E+ LQ + ELAV N ++++ E E+ QT N
Sbjct: 18 IAQTTEGALNEINNNLQRVRELAVQSANSTNSQSDLDSIQAEITQRLNEIDRVSGQTQFN 77
Query: 487 TTS 489
Sbjct: 78 GVK 80
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 32.2 bits (73), Expect = 0.20
Identities = 26/204 (12%), Positives = 57/204 (27%), Gaps = 18/204 (8%)
Query: 450 LEELAVNYDQKSQEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKDMSNHQKKRINEM 509
L L + + + LK + + + + ++ +
Sbjct: 288 LNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDR 347
Query: 510 LTNL------LKDLCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVK 563
L L ++ I +I + + +
Sbjct: 348 AHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEW 407
Query: 564 EDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQ 623
+ + + D T + A A IL L L L+ E +KL +E + L Q
Sbjct: 408 LEPEFGVRDG-----LYYLTEQQAQA-IL------DLRLQKLTGLEHEKLLDEYKELLDQ 455
Query: 624 LDEKDEEINQQSQYAEKLKEQIME 647
+ E + + E ++E++
Sbjct: 456 IAELLRILGSADRLMEVIREELEL 479
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 30.6 bits (69), Expect = 0.37
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 572 DPVDMAASIAPTPESAPASILPAIPGS---GLMLG---SLSNEE-RQKLEEERERLYQQL 624
+ +D SI P P + + AI + G++ + E +K++E +ER+ +++
Sbjct: 92 NGLDSLFSIVQMPGGVPVATV-AINNAKNAGILAASILGIKYPEIARKVKEYKERMKREV 150
Query: 625 DEKDEEINQQSQYAEKLKEQ 644
EK + + Q Y E L ++
Sbjct: 151 LEKAQRLEQIG-YKEYLNQK 169
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 30.3 bits (68), Expect = 0.61
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 411 VKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEELAVNYDQKSQEVETKNKE 470
+ E ++D + + + RL E AK + QA E+ Y+
Sbjct: 54 IAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRAR 113
Query: 471 FETLTEEL 478
FE L +L
Sbjct: 114 FEELNADL 121
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.6 bits (68), Expect = 0.75
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 21/212 (9%)
Query: 459 QKSQEVETKNKEFETLTEELTLKQTT--LNTTSTELQQIKDMSNHQKKRINEMLTNLLKD 516
+K V EF + E K+ E+++ K I + LT K
Sbjct: 567 KKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTVTNKP 626
Query: 517 LCEIGLVIGSEGDMKVTSDGAGKLEEEFTVARLYISKMKWRNGETVKEDEQVNLADPVDM 576
I + + G + +G I+ +K + +EDE+ + D ++
Sbjct: 627 RNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVK--GATSDEEDEESSHEDTENV 684
Query: 577 AASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 636
+ +L G+ + SL+ E QKL ++++ +L+ +++ +
Sbjct: 685 INGPEELYGTYEY-LL------GMRIWSLTKERYQKLLKQKQEKETELENL-LKLSAKDI 736
Query: 637 YAEKLKEQIMEQEEVSGLLVCGQTNERREQAR 668
+ LK + +E +R +AR
Sbjct: 737 WNTDLKAFEVGYQEF---------LQRDAEAR 759
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 30.1 bits (66), Expect = 0.99
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 630 EINQQSQYAEKLKEQIMEQEEVSGLLVCGQTNERRE-------QARKDLKGLEDTVT 679
E++Q Q AE+LK QI + + Q + + R+ L+G +
Sbjct: 3 ELDQLRQEAEQLKNQIRDARKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAKIY 59
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 29.3 bits (65), Expect = 1.4
Identities = 25/234 (10%), Positives = 73/234 (31%), Gaps = 5/234 (2%)
Query: 221 LEEEFTVARLYISKMKSEVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLQTNERR 280
EE+ T Y++++ + + + ++ K EYEK+ L +E
Sbjct: 21 FEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP---LGGDDEVM 77
Query: 281 EQARKDL-KGLEDTVTKELQTLHNLRKLFVQDLQARIKKSVTAEESEDDGGSLAQRQKIS 339
+ K +++ + L + + ++ + + + +A +
Sbjct: 78 SSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDLKEILTLKEVFQIASNDHDA 137
Query: 340 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKL-ITTARRDYEQLQGEMT 398
+ K V+ + ++ L ++ L+ +
Sbjct: 138 AINRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYFCALNTLQYKKKIALLEPLLG 197
Query: 399 RLTQENESAKEEVKELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 452
+ + K + L + + + +E +S E +++ ++ LE
Sbjct: 198 YMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEV 251
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 28.0 bits (62), Expect = 4.4
Identities = 16/91 (17%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 589 ASILPAIPGSGLMLGSLS--NEERQKLEEERERLYQQLDEK--DEEINQQSQYAEKLKEQ 644
A + A+ L S + ++++ + + + QLD K +E++ + + LK++
Sbjct: 223 AVVAKALWKIQPYLPEFSFCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDE 282
Query: 645 IMEQ-EEVSGLLVCGQTNERREQARKDLKGL 674
+ + V+ ++ C Q + R + G
Sbjct: 283 FRSRFKNVTKIMDCVQCDRCRLWGKIQTTGY 313
>d2pbdp1 d.110.1.1 (P:1-139) Profilin (actin-binding protein)
{Human (Homo sapiens), isoform I [TaxId: 9606]}
Length = 139
Score = 27.2 bits (60), Expect = 4.4
Identities = 8/44 (18%), Positives = 14/44 (31%)
Query: 30 EEKAGSKFIVKFPSGGEENGLSLGGKFYLFDKVFKPNATQEKVY 73
+ K S NGL+LGG+ + + +
Sbjct: 43 TPAEVGVLVGKDRSSFYVNGLTLGGQKCSVIRDSLLQDGEFSMD 86
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 106
Score = 26.3 bits (58), Expect = 4.9
Identities = 20/96 (20%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 406 SAKEEVKELITTAR---RDYEQLQGEMTRLT-QENESAKEEVKEVLQALEELAVNYDQKS 461
K EV++ + TA+ + + +L + T +E + E++ L+++E + D+
Sbjct: 6 VVKGEVQKAVNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETI 65
Query: 462 QEVETKNKEFETLTEELTLKQTTLNTTSTELQQIKD 497
VE ++F EL++++ + +T ++ +KD
Sbjct: 66 SIVEANPRKFNLDATELSIRKAFITSTRQIVRDMKD 101
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.1 bits (55), Expect = 7.7
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 602 LGSLSNEERQKLEEERERLYQQLDEKDEE 630
+G LS +++ L + RE + L
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNP 33
>d1jt6a2 a.121.1.1 (A:73-187) Multidrug binding protein QacR
{Staphylococcus aureus [TaxId: 1280]}
Length = 115
Score = 26.0 bits (57), Expect = 8.6
Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 4/65 (6%)
Query: 390 YEQLQGEMTRLTQE---NESAKEEVKELITTARRDYEQ-LQGEMTRLTQENESAKEEVKE 445
+ + E + E + Y E + +V
Sbjct: 16 TTEYYYPLQNAIIEFYTEYYKTNSINEKMNKLENKYIDAYHVIFKEGNLNGEWSINDVNA 75
Query: 446 VLQAL 450
V +
Sbjct: 76 VSKIA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.336
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,387,845
Number of extensions: 111314
Number of successful extensions: 561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 112
Length of query: 720
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 628
Effective length of database: 1,144,436
Effective search space: 718705808
Effective search space used: 718705808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.1 bits)