BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5719
(378 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 218 bits (556), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 118/162 (72%), Gaps = 38/162 (23%)
Query: 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDP 140
GK YLFDKVFKPNA+QEKVY+EAAKSIV+DVL
Sbjct: 50 GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVL---------------------------- 81
Query: 141 NKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE 200
AGYNGTIFAYGQTSSGKTHTMEGV+GD KQGIIPRIVNDIFNHIY M+
Sbjct: 82 ----------AGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEV 131
Query: 201 NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
NLEF IKVSY+EIYMDKIRDLLDVSKVNLSVHEDKNRVP+VK
Sbjct: 132 NLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVK 173
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 192 bits (488), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/183 (56%), Positives = 114/183 (62%), Gaps = 44/183 (24%)
Query: 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVM 137
IG+GK Y+FD+V PN TQE+VY+ AK IV DVL
Sbjct: 40 IGQGKPYVFDRVLPPNTTQEQVYNACAKQIVKDVLE------------------------ 75
Query: 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197
GYNGTIFAYGQTSSGKTHTMEG + DP GIIPRI +DIF+HIY
Sbjct: 76 --------------GYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYS 121
Query: 198 MDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQ 257
MDENLEF IKVSYFEIY+DKIRDLLDVSK NL+VHEDKNRVP+VK CT S
Sbjct: 122 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYVK------GCTERFVSS 175
Query: 258 AEE 260
EE
Sbjct: 176 PEE 178
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 185 bits (469), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 106/161 (65%), Gaps = 38/161 (23%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K Y FD+VF+ + +QE+VY++ AK IV DVL
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE---------------------------- 75
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
GYNGTIFAYGQTSSGKTHTMEG + DP GIIPRIV DIFN+IY MDEN
Sbjct: 76 ----------GYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDEN 125
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
LEF IKVSYFEIY+DKIRDLLDVSK NLSVHEDKNRVP+VK
Sbjct: 126 LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 166
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 184 bits (468), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/161 (59%), Positives = 106/161 (65%), Gaps = 38/161 (23%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K Y FD+VF+ + +QE+VY++ AK IV DVL
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE---------------------------- 75
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
GYNGTIFAYGQTSSGKTHTMEG + DP GIIPRIV DIFN+IY MDEN
Sbjct: 76 ----------GYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDEN 125
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
LEF IKVSYFEIY+DKIRDLLDVSK NLSVHEDKNRVP+VK
Sbjct: 126 LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 166
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 182 bits (463), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 94/161 (58%), Positives = 105/161 (65%), Gaps = 38/161 (23%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K Y FD+VF+ + +QE+VY++ AK IV DVL
Sbjct: 44 KPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLE---------------------------- 75
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
GYNGTIFAYGQTSSGK HTMEG + DP GIIPRIV DIFN+IY MDEN
Sbjct: 76 ----------GYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDEN 125
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
LEF IKVSYFEIY+DKIRDLLDVSK NLSVHEDKNRVP+VK
Sbjct: 126 LEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 166
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 84/160 (52%), Gaps = 39/160 (24%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD+VF + Q ++D + K V D+L G
Sbjct: 49 FTFDRVFDMSCKQSDIFDFSIKPTVDDILNG----------------------------- 79
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGV-MGDPNKQGIIPRIVNDIFNHIYQMDENL 202
YNGT+FAYGQT +GK++TM G + DP+ +G+IPRIV IF I N+
Sbjct: 80 ---------YNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANI 130
Query: 203 EFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
E+ ++VSY EIYM++IRDLL NL VHE+KNR +VK
Sbjct: 131 EYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVK 170
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 75/141 (53%), Gaps = 39/141 (27%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K + FD V+ NA Q ++YDE + +V VL
Sbjct: 68 KTFTFDAVYDWNAKQFELYDETFRPLVDSVLQ---------------------------- 99
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
G+NGTIFAYGQT +GKT+TMEG+ GDP K+G+IP + IF HI + +N
Sbjct: 100 ----------GFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISR-SQN 148
Query: 202 LEFIIKVSYFEIYMDKIRDLL 222
+++++ SY EIY ++IRDLL
Sbjct: 149 QQYLVRASYLEIYQEEIRDLL 169
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 71/141 (50%), Gaps = 39/141 (27%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K + FD V+ ++ Q +YDE + ++ VL G+NGT+FAYGQT +GKT+TM+G +P
Sbjct: 68 KTFTFDAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPE 127
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
+G+IP+ IF HI + +N
Sbjct: 128 LRGVIPNAF--------------------------------------EHIFTHISR-SQN 148
Query: 202 LEFIIKVSYFEIYMDKIRDLL 222
+++++ SY EIY ++IRDLL
Sbjct: 149 QQYLVRASYLEIYQEEIRDLL 169
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/167 (35%), Positives = 82/167 (49%), Gaps = 44/167 (26%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
Q+ K + FD+VF N T + VY+E A I
Sbjct: 39 QVDGSKSFNFDRVFHGNETTKNVYEEIAAPI----------------------------- 69
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196
I + GYNGTIFAYGQT+SGKT+TM MG + G+IPR ++DIF I
Sbjct: 70 ---------IDSAIQGYNGTIFAYGQTASGKTYTM---MGSEDHLGVIPRAIHDIFQKIK 117
Query: 197 QMDENLEFIIKVSYFEIYMDKIRDLLDVSK--VNLSVHEDKNRVPFV 241
+ + EF+++VSY EIY + I DLL ++ L + ED NR +V
Sbjct: 118 KFPDR-EFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYV 163
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/103 (42%), Positives = 59/103 (57%), Gaps = 11/103 (10%)
Query: 148 HVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE---NLEF 204
H GY+ IFAYGQT SGK++TM MG P++ G+IPR D+F I + N+ +
Sbjct: 131 HNFEGYHTCIFAYGQTGSGKSYTM---MGTPDQPGLIPRTCEDLFQRIASAQDETPNISY 187
Query: 205 IIKVSYFEIYMDKIRDLLDVSKVN-----LSVHEDKNRVPFVK 242
+KVSYFE+Y + +RDLL N L V E P+VK
Sbjct: 188 NVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVK 230
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 78/164 (47%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 44 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVAPILDEVIMGYNATIFA 103
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TMEG PN++ + + + DP
Sbjct: 104 YGQTGTGKTFTMEGER-SPNEE--------------YCWEE--------------DP-LA 133
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 175
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 35 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 94
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 95 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 124
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 125 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 166
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 44 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 103
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 104 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LD 133
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 175
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 44 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 103
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 104 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 133
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 175
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 44 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 103
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 104 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 133
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 175
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 43 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 102
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 103 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 132
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 133 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 174
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 81.6 bits (200), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 46 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 105
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 106 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 135
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 136 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 177
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 77/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 29 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 88
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E DP
Sbjct: 89 YGQTGTGKTFTME--------------------------GERSPNEEYTWE---EDP-LA 118
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 119 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 160
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY-QMDENLE 203
++ H GYN IFAYGQT +GK++TM G + ++QGIIP++ D+F+ I ++N+
Sbjct: 97 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGIIPQLCEDLFSRINDTTNDNMS 155
Query: 204 FIIKVSYFEIYMDKIRDLLDV-SKVNLSVHEDKNRVPFVK 242
+ ++VSY EIY +++RDLL+ +K NL V E P+V+
Sbjct: 156 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 195
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 76/164 (46%), Gaps = 32/164 (19%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 44 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 103
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TME G+ S + +T E V
Sbjct: 104 YGQTGTGKTFTME--------------------------GERSPNEEYTWEEV----PLA 133
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS 225
GIIPR ++ IF + D EF +KVS EIY +++ DLL+ S
Sbjct: 134 GIIPRTLHQIFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPS 175
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY-QMDENLE 203
++ H GYN IFAYGQT +GK++TM G + ++QGIIP++ D+F+ I ++N+
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGIIPQLCEDLFSRINDTTNDNMS 139
Query: 204 FIIKVSYFEIYMDKIRDLLDV-SKVNLSVHEDKNRVPFVK 242
+ ++VSY EIY +++RDLL+ +K NL V E P+V+
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 179
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 81.3 bits (199), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 35/151 (23%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K + FD+ F P + Q VY ++ +VL GYN T+FAYGQT +GKTHTM G
Sbjct: 67 KKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVG------ 120
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
+T ++ D + GIIPR ++ +F+ + M+
Sbjct: 121 ------------------------NETAELKSSWEDDSDIGIIPRALSHLFDELRMME-- 154
Query: 202 LEFIIKVSYFEIYMDKIRDLL---DVSKVNL 229
+E+ +++SY E+Y +++ DLL D +K+ +
Sbjct: 155 VEYTMRISYLELYNEELCDLLSTDDTTKIRI 185
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY-QMDENLE 203
++ H GYN IFAYGQT +GK++TM G + ++QGIIP++ D+F+ I ++N+
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGIIPQLCEDLFSRINDTTNDNMS 139
Query: 204 FIIKVSYFEIYMDKIRDLLDV-SKVNLSVHEDKNRVPFVK 242
+ ++VSY EIY +++RDLL+ +K NL V E P+V+
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 179
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 67/100 (67%), Gaps = 3/100 (3%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY-QMDENLE 203
++ H GYN IFAYGQT +GK++TM G + ++QGIIP++ D+F+ I ++N+
Sbjct: 81 MLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQ-EKDQQGIIPQLCEDLFSRINDTTNDNMS 139
Query: 204 FIIKVSYFEIYMDKIRDLLDV-SKVNLSVHEDKNRVPFVK 242
+ ++VSY EIY +++RDLL+ +K NL V E P+V+
Sbjct: 140 YSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVE 179
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 8/103 (7%)
Query: 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENL 202
+ I+ + GYN IFAYGQT SGK++TM MG ++ G+IPR+ + +F Q +EN
Sbjct: 82 ENILQNAFDGYNACIFAYGQTGSGKSYTM---MGTADQPGLIPRLCSGLFERT-QKEENE 137
Query: 203 E--FIIKVSYFEIYMDKIRDLLDV--SKVNLSVHEDKNRVPFV 241
E F ++VSY EIY +K+RDLLD S+ L V E P+V
Sbjct: 138 EQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYV 180
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 39/140 (27%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME-GVMGDPNK 142
+ FD+VF P + Q++V++E A +V L GY IFAYGQT SGKT TME G GDP
Sbjct: 85 FSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQL 143
Query: 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENL 202
+G+IP L +F+ Q SG+ T
Sbjct: 144 EGLIPRALR----HLFSVAQELSGQGWT-------------------------------- 167
Query: 203 EFIIKVSYFEIYMDKIRDLL 222
+ SY EIY + +RDLL
Sbjct: 168 -YSFVASYVEIYNETVRDLL 186
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 56 EVDRIKEAVRQKNLARRGPAPQIG--KGKFYLFDKVFKPNATQEK-------VYDEAA-- 104
E++ KE + Q N+ R+ + +G +F ++ P ++E +DE+
Sbjct: 40 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 99
Query: 105 -KSIVSDVLAGYNGTIFAYGQTS---SGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160
+SI + + IF++ Q S ++ E M P +I L GYN IFAY
Sbjct: 100 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE--MVSP----LIQSALDGYNICIFAY 153
Query: 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI--YQMDENLEFIIKVSYFEIYMDKI 218
GQT SGKT+TM+GV P G+IPR V+ +F+ I Y+ + E+ IK ++ EIY + +
Sbjct: 154 GQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYR-NLGWEYEIKATFLEIYNEVL 209
Query: 219 RDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
DLL + ++ + KN + V N+
Sbjct: 210 YDLLSNEQKDMEIRMAKNNKNDIYVSNIT 238
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEF 204
+I VL G+N TIFAYGQT +GKT TM G +P G IP +F+ I N F
Sbjct: 81 LIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEP---GAIPNSFKHLFDAINSSSSNQNF 137
Query: 205 IIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFV 241
++ SY E+Y ++IRDL+ + L + EDK R +V
Sbjct: 138 LVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYV 173
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 56 EVDRIKEAVRQKNLARRGPAPQIG--KGKFYLFDKVFKPNATQEK-------VYDEAA-- 104
E++ KE + Q N+ R+ + +G +F ++ P ++E +DE+
Sbjct: 26 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 85
Query: 105 -KSIVSDVLAGYNGTIFAYGQTS---SGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160
+SI + + IF++ Q S ++ E M P +I L GYN IFAY
Sbjct: 86 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE--MVSP----LIQSALDGYNICIFAY 139
Query: 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI--YQMDENLEFIIKVSYFEIYMDKI 218
GQT SGKT+TM+GV P G+IPR V+ +F+ I Y+ + E+ IK ++ EIY + +
Sbjct: 140 GQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYR-NLGWEYEIKATFLEIYNEVL 195
Query: 219 RDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
DLL + ++ + KN + V N+
Sbjct: 196 YDLLSNEQKDMEIRMAKNNKNDIYVSNIT 224
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENL 202
Q I+ H+L G N ++ AYG T +GKTHTM +G P + G+IPR + D+ +E
Sbjct: 88 QPILRHLLEGQNASVLAYGPTGAGKTHTM---LGSPEQPGVIPRALMDLLQ--LTREEGA 142
Query: 203 E-----FIIKVSYFEIYMDKIRDLLDVSKVNLSVHED 234
E + +SY EIY +K+ DLLD + +L + ED
Sbjct: 143 EGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIRED 179
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 40/153 (26%)
Query: 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVM 137
+G+ + + F V +A QE VY + ++ G+N T+FAYGQT SGKT+T M
Sbjct: 46 LGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT----M 101
Query: 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197
G+ + ++ ++QGI+PR + + F I
Sbjct: 102 GEASVASLL-------------------------------EDEQGIVPRAMAEAFKLI-- 128
Query: 198 MDEN--LEFIIKVSYFEIYMDKIRDLLDVSKVN 228
DEN L+ ++ VSY E+Y ++ RDLL+V +
Sbjct: 129 -DENDLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 104/209 (49%), Gaps = 27/209 (12%)
Query: 56 EVDRIKEAVRQKNLARRGPAPQIG--KGKFYLFDKVFKPNATQEK-------VYDEAA-- 104
E++ KE + Q N+ R+ + +G +F ++ P ++E +DE+
Sbjct: 29 ELETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTVE 88
Query: 105 -KSIVSDVLAGYNGTIFAYGQTS---SGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160
+SI + + IF++ Q S ++ E M P +I L GYN IFAY
Sbjct: 89 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFE--MVSP----LIQSALDGYNICIFAY 142
Query: 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI--YQMDENLEFIIKVSYFEIYMDKI 218
GQ+ SGKT+TM+GV P G+IPR V+ +F+ I Y+ + E+ IK ++ EIY + +
Sbjct: 143 GQSGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYR-NLGWEYEIKATFLEIYNEVL 198
Query: 219 RDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
DLL + ++ + KN + V N+
Sbjct: 199 YDLLSNEQKDMEIRMAKNNKNDIYVSNIT 227
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 40/153 (26%)
Query: 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVM 137
+G+ + + F V +A QE VY + ++ G+N T+FAYGQT SGKT+T M
Sbjct: 46 LGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYT----M 101
Query: 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197
G+ + ++ ++QGI+PR + + F I
Sbjct: 102 GEASVASLL-------------------------------EDEQGIVPRAMAEAFKLI-- 128
Query: 198 MDEN--LEFIIKVSYFEIYMDKIRDLLDVSKVN 228
DEN L+ ++ VSY E+Y ++ RDLL+V +
Sbjct: 129 -DENDLLDCLVHVSYLEVYKEEFRDLLEVGTAS 160
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI--YQMDENL 202
+I L GYN IFAYGQT SGKT+TM+GV P G+IPR V+ +F+ I Y+ +
Sbjct: 130 LIQSALDGYNICIFAYGQTGSGKTYTMDGV---PESVGVIPRTVDLLFDSIRGYR-NLGW 185
Query: 203 EFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
E+ IK ++ EIY + + DLL + ++ + KN + V N+
Sbjct: 186 EYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNIT 230
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 42/144 (29%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
GK + DKVF P A+Q+ V+ E
Sbjct: 45 GKPVSFELDKVFSPQASQQDVFQEV----------------------------------- 69
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
Q ++ + G+N IFAYGQT +GKT+TMEG +P GI R + +F+ + +
Sbjct: 70 ----QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENP---GINQRALQLLFSEVQEK 122
Query: 199 DENLEFIIKVSYFEIYMDKIRDLL 222
+ E+ I VS EIY + +RDLL
Sbjct: 123 ASDWEYTITVSAAEIYNEVLRDLL 146
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 22/161 (13%)
Query: 133 MEGVMGDPNK--------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGII 184
++GV+ D ++ + ++ L GYNGTI YGQT +GKT+TM G + +GI+
Sbjct: 76 LDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGIL 135
Query: 185 PRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLD-VSKVNLSVHEDKNRVPFVKV 243
PR + +F I + + ++VSY EIY + + DLL + V SV P V
Sbjct: 136 PRALQQVFRMIEERPTH-AITVRVSYLEIYNESLFDLLSTLPYVGPSV------TPMTIV 188
Query: 244 KN---LVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHH 281
+N + + S+ + EE ++ +E GET +++ H
Sbjct: 189 ENPQGVFIKGLSVHLTSQEEDAFSLLFE---GETNRIIASH 226
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 76/168 (45%), Gaps = 45/168 (26%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
+ + FD+VF P ++Q ++ E ++ L GYN IFAYGQT SGKT+TM+GV P
Sbjct: 103 QIFSFDQVFHPLSSQSDIF-EMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGV---PE 158
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI--YQMD 199
G+ IPR V+ +F+ I Y+ +
Sbjct: 159 SVGV--------------------------------------IPRTVDLLFDSIRGYR-N 179
Query: 200 ENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
E+ IK ++ EIY + + DLL + ++ + KN + V N+
Sbjct: 180 LGWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNIT 227
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G +
Sbjct: 123 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL------ 176
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIF---NHIYQMDE 200
SGK+ +GI D+F N +
Sbjct: 177 ---------------------SGKSQNAS--------KGIYAMASRDVFLLKNQPRYRNL 207
Query: 201 NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED-KNRVPFVKVKNLVARC 250
NLE + V++FEIY K+ DLL+ K L V ED + +V V ++ + C
Sbjct: 208 NLE--VYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTC 255
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 70/155 (45%), Gaps = 50/155 (32%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
++FD VF +TQ +V++ K I+ L GYN T+ AYG T +GKTHTM G +P
Sbjct: 74 FVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEP--- 130
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ-MDENL 202
G ++ TM H+Y+ MDE
Sbjct: 131 -----------GVMYL----------TML---------------------HLYKCMDEIK 148
Query: 203 EFII---KVSYFEIYMDKIRDLLDVSKVNLSVHED 234
E I VSY E+Y ++IRDLL V+ L+V ED
Sbjct: 149 EEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVRED 182
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 73/171 (42%), Gaps = 42/171 (24%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G +
Sbjct: 51 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL------ 104
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIF---NHIYQMDE 200
SGK+ +GI D+F N +
Sbjct: 105 ---------------------SGKSQNAS--------KGIYAMASRDVFLLKNQPRYRNL 135
Query: 201 NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED-KNRVPFVKVKNLVARC 250
NLE + V++FEIY K+ DLL+ K L V ED + +V V ++ + C
Sbjct: 136 NLE--VYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVVGLQEYLVTC 183
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 61/216 (28%)
Query: 60 IKEAVRQKNLARRGPA----PQIGKGKFYL-------FDKVFKPNATQEKVYDEAAKSIV 108
++EA ++ L RR P+ P GK + FD F +Q+++Y +V
Sbjct: 28 VREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLV 87
Query: 109 SDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKT 168
+L G+ T AYGQT +GK+++M G T G+
Sbjct: 88 DKLLEGFQCTALAYGQTGTGKSYSM---------------------------GMTPPGEI 120
Query: 169 HTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKV--SYFEIYMDKIRDLLDVSK 226
P GI+PR + DIF + EN + I+V S+ EIY +K DLL +
Sbjct: 121 --------LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP 172
Query: 227 VNLSVHEDKNRVPFVKVKNLVARCTSME-SSQAEEH 261
+P V + RCT + SQA+ H
Sbjct: 173 ----------HMPMVAAR--CQRCTCLPLHSQADLH 196
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 88/216 (40%), Gaps = 61/216 (28%)
Query: 60 IKEAVRQKNLARRGPA----PQIGKGKFYL-------FDKVFKPNATQEKVYDEAAKSIV 108
++EA ++ L RR P+ P GK + FD F +Q+++Y +V
Sbjct: 28 VREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLV 87
Query: 109 SDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKT 168
+L G+ T AYGQT +GK+++M G T G+
Sbjct: 88 DKLLEGFQCTALAYGQTGTGKSYSM---------------------------GMTPPGEI 120
Query: 169 HTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKV--SYFEIYMDKIRDLLDVSK 226
P GI+PR + DIF + EN + I+V S+ EIY +K DLL +
Sbjct: 121 --------LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP 172
Query: 227 VNLSVHEDKNRVPFVKVKNLVARCTSME-SSQAEEH 261
+P V + RCT + SQA+ H
Sbjct: 173 ----------HMPMVAAR--CQRCTCLPLHSQADLH 196
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 12/125 (9%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEF 204
++ + GYN IFAYGQT SGKT T+ G +P G+ PR ++FN + + + F
Sbjct: 79 LVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP---GLTPRATKELFNILKRDSKRFSF 135
Query: 205 IIKVSYFEIYMDKIRDLL---DVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEH 261
+K E+Y D + DLL ++ L + +D + FV+ T++ S EE
Sbjct: 136 SLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVE------NVTTIPISTLEEL 189
Query: 262 KKAIE 266
+ +E
Sbjct: 190 RMILE 194
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 44/144 (30%)
Query: 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGD 139
K K +++D+VF NATQ+ V+++
Sbjct: 45 KAKQHMYDRVFDGNATQDDVFEDT------------------------------------ 68
Query: 140 PNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199
+ ++ + GYN IFAYGQT SGKT T+ G +P G+ PR ++++F I + D
Sbjct: 69 ---KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP---GLTPRAMSELF-RIMKKD 121
Query: 200 EN-LEFIIKVSYFEIYMDKIRDLL 222
N F +K E+Y D + DLL
Sbjct: 122 SNKFSFSLKAYMVELYQDTLVDLL 145
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 132 LVQSSLDGYNVAIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 186
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 187 YKVNAEFIEIYNENIVDLL 205
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 62/154 (40%), Gaps = 41/154 (26%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G +
Sbjct: 103 FCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL------ 156
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIF---NHIYQMDE 200
SGK +GI D+F N
Sbjct: 157 ---------------------SGKAQNAS--------KGIYAMASRDVFLLKNQPCYRKL 187
Query: 201 NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED 234
LE + V++FEIY K+ DLL+ K L V ED
Sbjct: 188 GLE--VYVTFFEIYNGKLFDLLN-KKAKLRVLED 218
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 87 LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 141
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 142 YKVNCEFIEIYNENIVDLL 160
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 130
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 131 YKVNCEFIEIYNENIVDLL 149
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 130
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 131 YKVNCEFIEIYNENIVDLL 149
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 75 LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 129
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 130 YKVNCEFIEIYNENIVDLL 148
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 46/79 (58%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
++ L GYN IFAYGQT SGKT TM GD GIIP ++ IFN I ++ + +
Sbjct: 76 LVQSSLDGYNVCIFAYGQTGSGKTFTMLN-PGD----GIIPSTISHIFNWINKLKTKGWD 130
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 131 YKVNCEFIEIYNENIVDLL 149
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLE 203
+I L GYN IFAYGQT SGKT+TM GD GI+P +N IF+ I ++
Sbjct: 98 LIQSSLDGYNVCIFAYGQTGSGKTYTMLNP-GD----GIVPATINHIFSWIDKLAARGWS 152
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ + + EIY + I DLL
Sbjct: 153 YKVSCEFIEIYNENIVDLL 171
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD +F+P+ T +++++E + +V L GYN IFAYGQT SGKT+TM GD
Sbjct: 55 FQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA-GD---- 108
Query: 144 GIIPHVLA 151
G+IP L+
Sbjct: 109 GMIPMTLS 116
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 6/79 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NLE 203
++ L GYN IFAYGQT SGKT+TM GD G+IP ++ IF + E
Sbjct: 77 LVQSSLDGYNVCIFAYGQTGSGKTYTMLNA-GD----GMIPMTLSHIFKWTANLKERGWN 131
Query: 204 FIIKVSYFEIYMDKIRDLL 222
+ ++ Y EIY + I DLL
Sbjct: 132 YEMECEYIEIYNETILDLL 150
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 72/172 (41%), Gaps = 44/172 (25%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD F +A E VY A+ +V TIF G
Sbjct: 141 FRFDYAFDDSAPNEMVYRFTARPLVE--------TIFERGM------------------- 173
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNK---QGIIPRIVNDIFNHIYQMD- 199
T FAYGQT SGKTHTM G N+ +GI D+F + + +
Sbjct: 174 -----------ATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAARDVFLMLKKPNY 222
Query: 200 ENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED-KNRVPFVKVKNLVARC 250
+ LE + ++FEIY K+ DLL+ K L V ED K +V V ++ +C
Sbjct: 223 KKLELQVYATFFEIYSGKVFDLLN-RKTKLRVLEDGKQQVQVVGLQEREVKC 273
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NLE 203
+I L G N +FAYGQT SGKT TM P G+IP + IFN I ++ E
Sbjct: 454 LIQCSLDGTNVCVFAYGQTGSGKTFTMS----HPT-NGMIPLSLKKIFNDIEELKEKGWS 508
Query: 204 FIIKVSYFEIYMDKIRDLLD 223
+ ++ + EIY + I DLL+
Sbjct: 509 YTVRGKFIEIYNEAIVDLLN 528
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 46/84 (54%), Gaps = 6/84 (7%)
Query: 145 IIPHVLAGY-NGTI---FAYGQTSSGKTHTMEGVM--GDPNKQGIIPRIVNDIFNHIYQM 198
I P ++ Y NG + FAYGQT SGKT+TM G G + GI DIF +
Sbjct: 72 IKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIY 131
Query: 199 DENLEFIIKVSYFEIYMDKIRDLL 222
D++ I +S++EIY K+ DLL
Sbjct: 132 DKDNTKGIFISFYEIYCGKLYDLL 155
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 228 NLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKS 287
++ + ED+N + K L R + + ++ AEE +KA K + ++S E R+K
Sbjct: 991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Query: 288 LQESMKEAENKKRSLEECVDALREECAKLKA 318
++S +E E KR LE L E+ A+L+A
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 51 KRYQYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFK 91
+RY EV+ +KEAV+ ++ ++ P + K +Y+FD++ +
Sbjct: 763 RRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFDEMMR 803
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 51 KRYQYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFK 91
+RY EV+ +KEAV+ ++ ++ P + K +Y+FD++ +
Sbjct: 763 RRYLEEVEHVKEAVQLRSYGQKDPIVEFKKETYYMFDEMMR 803
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 102 EAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 144
E K + ++ + YN IF YG +GKTH ++ + K+G
Sbjct: 24 EVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKKRG 65
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 150 LAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 182
L IF YG +GKTH ++ + K+G
Sbjct: 33 LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG 65
>pdb|1FZT|A Chain A, Solution Structure And Dynamics Of An Open B-Sheet,
Glycolytic Enzyme-Monomeric 23.7 Kda Phosphoglycerate
Mutase From Schizosaccharomyces Pombe
Length = 211
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
K I+PH+L G I A+G + +EG+ GD I+ R + +Y +D++
Sbjct: 145 KSTIVPHILKGEKVLIAAHGNSLRALIMDLEGLTGDQ----IVKRELATGVPIVYHLDKD 200
Query: 202 LEFIIK 207
+++ K
Sbjct: 201 GKYVSK 206
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 102 EAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 144
E K + ++ + YN IF YG +GKTH ++ + K+G
Sbjct: 23 EVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKKRG 64
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 150 LAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 182
L IF YG +GKTH ++ + K+G
Sbjct: 32 LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG 64
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 102 EAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 144
E K + ++ + YN IF YG +GKTH ++ + K+G
Sbjct: 24 EVVKEALENLGSLYN-PIFIYGSVGTGKTHLLQAAGNEAKKRG 65
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 150 LAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQG 182
L IF YG +GKTH ++ + K+G
Sbjct: 33 LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG 65
>pdb|3PF3|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate
Isomerase From Giardia Lamblia Derivatized With Mmts
Length = 257
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 196 YQMDENLEFIIKVSYFEIYMDKIRDLLDV----SKVNLSVHEDKNRVPFVKVKNLVARCT 251
++ + +L+FI K I KI D +DV S V+LS N +++ A+
Sbjct: 12 FKXNGSLDFI-KSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI---AAQNV 67
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDAL 309
+E + A + ++E +++G +++ H E R + + A+ KR+LE+ + +
Sbjct: 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVI 125
>pdb|2YC8|A Chain A, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|B Chain B, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|C Chain C, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|D Chain D, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|E Chain E, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|F Chain F, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|G Chain G, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|H Chain H, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|I Chain I, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|J Chain J, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|K Chain K, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|L Chain L, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|M Chain M, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|N Chain N, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|O Chain O, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|P Chain P, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|Q Chain Q, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|R Chain R, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|S Chain S, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia.
pdb|2YC8|T Chain T, Crystal Structure Of A Double Mutant (C202a And C222n) Of
Triosephosphate Isomerase From Giardia Lamblia
Length = 255
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 196 YQMDENLEFIIKVSYFEIYMDKIRDLLDV----SKVNLSVHEDKNRVPFVKVKNLVARCT 251
++ + +L+FI K I KI D +DV S V+LS N +++ A+
Sbjct: 12 FKCNGSLDFI-KSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI---AAQNV 67
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLE 303
+E + A + ++E +++G +++ H E R + + A+ KR+LE
Sbjct: 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALE 119
>pdb|2YC7|A Chain A, Crystal Structure Of A Mutant (C202a) Of Triosephosphate
Isomerase From Giardia Lamblia Complexed With
2-Phosphoglycolic Acid
Length = 257
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 196 YQMDENLEFIIKVSYFEIYMDKIRDLLDV----SKVNLSVHEDKNRVPFVKVKNLVARCT 251
++ + +L+FI K I KI D +DV S V+LS N +++ A+
Sbjct: 12 FKCNGSLDFI-KSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI---AAQNV 67
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLE 303
+E + A + ++E +++G +++ H E R + + A+ KR+LE
Sbjct: 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALE 119
>pdb|2DP3|A Chain A, Crystal Structure Of A Double Mutant (C202aA198V) OF
TRIOSEPHOSPHATE Isomerase From Giardia Lamblia
Length = 257
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 196 YQMDENLEFIIKVSYFEIYMDKIRDLLDV----SKVNLSVHEDKNRVPFVKVKNLVARCT 251
++ + +L+FI K I KI D +DV S V+LS N +++ A+
Sbjct: 12 FKCNGSLDFI-KSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI---AAQNV 67
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLE 303
+E + A + ++E +++G +++ H E R + + A+ KR+LE
Sbjct: 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALE 119
>pdb|2YC6|A Chain A, Crystal Structure Of A Triple Mutant (A198v, C202a And
C222n) Of Triosephosphate Isomerase From Giardia Lamblia
Complexed With 2-Phosphoglycolic Acid
Length = 257
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 8/112 (7%)
Query: 196 YQMDENLEFIIKVSYFEIYMDKIRDLLDV----SKVNLSVHEDKNRVPFVKVKNLVARCT 251
++ + +L+FI K I KI D +DV S V+LS N +++ A+
Sbjct: 12 FKCNGSLDFI-KSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRI---AAQNV 67
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLE 303
+E + A + ++E +++G +++ H E R + + A+ KR+LE
Sbjct: 68 YLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALE 119
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,280,691
Number of Sequences: 62578
Number of extensions: 365918
Number of successful extensions: 1333
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1106
Number of HSP's gapped (non-prelim): 161
length of query: 378
length of database: 14,973,337
effective HSP length: 100
effective length of query: 278
effective length of database: 8,715,537
effective search space: 2422919286
effective search space used: 2422919286
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)