Query psy5719
Match_columns 378
No_of_seqs 345 out of 1755
Neff 7.5
Searched_HMMs 46136
Date Sat Aug 17 00:51:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 8.4E-62 1.8E-66 491.2 9.0 236 79-368 49-294 (574)
2 KOG0245|consensus 100.0 9E-58 2E-62 472.8 8.3 235 81-367 46-305 (1221)
3 KOG0239|consensus 100.0 3.2E-56 6.9E-61 464.3 14.6 277 32-366 285-596 (670)
4 KOG0240|consensus 100.0 1E-56 2.2E-61 444.1 8.1 232 82-366 49-287 (607)
5 KOG0242|consensus 100.0 2.6E-56 5.7E-61 466.4 11.6 228 81-365 52-286 (675)
6 KOG0243|consensus 100.0 2.5E-56 5.5E-61 469.3 10.1 235 81-365 94-345 (1041)
7 cd01373 KISc_KLP2_like Kinesin 100.0 4.3E-55 9.4E-60 428.8 10.9 241 81-367 40-294 (337)
8 PLN03188 kinesin-12 family pro 100.0 5.2E-55 1.1E-59 463.6 12.1 266 58-367 98-391 (1320)
9 cd01370 KISc_KIP3_like Kinesin 100.0 8.6E-55 1.9E-59 426.9 9.9 235 79-367 51-295 (338)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.3E-53 2.7E-58 419.6 10.6 228 80-367 53-304 (345)
11 KOG0247|consensus 100.0 3.2E-53 6.9E-58 428.6 7.8 271 81-367 80-393 (809)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 1.3E-51 2.9E-56 407.2 11.2 235 79-367 45-306 (356)
13 cd01367 KISc_KIF2_like Kinesin 100.0 1.7E-51 3.6E-56 401.2 10.2 225 81-367 50-281 (322)
14 cd01375 KISc_KIF9_like Kinesin 100.0 6E-51 1.3E-55 399.2 11.3 235 79-367 45-293 (334)
15 cd01372 KISc_KIF4 Kinesin moto 100.0 8.2E-51 1.8E-55 399.5 11.3 260 60-367 3-297 (341)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 1.3E-50 2.8E-55 396.7 10.3 236 79-367 45-290 (333)
17 cd01376 KISc_KID_like Kinesin 100.0 1.6E-50 3.4E-55 393.9 9.7 227 80-367 45-278 (319)
18 cd01374 KISc_CENP_E Kinesin mo 100.0 1.7E-50 3.8E-55 394.1 9.2 232 80-367 38-278 (321)
19 cd01369 KISc_KHC_KIF5 Kinesin 100.0 4.1E-50 8.8E-55 392.2 11.6 256 59-367 3-282 (325)
20 cd01364 KISc_BimC_Eg5 Kinesin 100.0 9E-50 2E-54 393.7 11.4 241 80-367 46-300 (352)
21 KOG0241|consensus 100.0 1.2E-49 2.6E-54 406.8 5.5 235 79-367 50-308 (1714)
22 cd01366 KISc_C_terminal Kinesi 100.0 6E-48 1.3E-52 377.5 10.2 251 59-367 3-283 (329)
23 PF00225 Kinesin: Kinesin moto 100.0 3.9E-48 8.5E-53 379.6 4.9 239 78-367 37-292 (335)
24 smart00129 KISc Kinesin motor, 100.0 1.3E-46 2.8E-51 368.9 10.8 235 79-367 43-285 (335)
25 cd00106 KISc Kinesin motor dom 100.0 4.3E-46 9.3E-51 364.2 10.4 234 80-367 43-287 (328)
26 KOG0244|consensus 100.0 2.7E-45 5.9E-50 380.7 14.1 264 50-367 2-274 (913)
27 KOG0246|consensus 100.0 1.3E-44 2.9E-49 357.3 11.7 257 45-354 192-486 (676)
28 COG5059 KIP1 Kinesin-like prot 100.0 6.1E-44 1.3E-48 369.8 8.6 263 49-366 13-292 (568)
29 cd01363 Motor_domain Myosin an 100.0 4.9E-31 1.1E-35 237.9 2.8 151 99-367 8-164 (186)
30 KOG0243|consensus 98.9 3.3E-10 7.1E-15 121.6 -0.6 102 127-236 93-206 (1041)
31 KOG4280|consensus 98.7 3.9E-09 8.5E-14 108.4 1.9 72 123-201 46-127 (574)
32 KOG0239|consensus 98.7 3.4E-08 7.4E-13 104.5 8.2 95 117-219 344-451 (670)
33 PLN03188 kinesin-12 family pro 98.6 3.5E-08 7.5E-13 107.7 3.6 74 127-200 130-215 (1320)
34 cd01373 KISc_KLP2_like Kinesin 98.5 9.7E-08 2.1E-12 94.0 4.6 73 128-200 40-122 (337)
35 cd01370 KISc_KIP3_like Kinesin 98.5 1.4E-07 3E-12 93.0 5.0 73 124-203 49-130 (338)
36 KOG0241|consensus 98.4 2.1E-07 4.5E-12 98.2 3.5 64 143-213 83-146 (1714)
37 cd01368 KISc_KIF23_like Kinesi 98.3 4.2E-07 9E-12 89.8 3.2 64 127-197 53-125 (345)
38 cd01367 KISc_KIF2_like Kinesin 98.3 3.9E-07 8.4E-12 89.2 2.8 63 128-197 50-121 (322)
39 cd01371 KISc_KIF3 Kinesin moto 98.3 5.9E-07 1.3E-11 88.3 4.0 74 125-202 44-126 (333)
40 cd01365 KISc_KIF1A_KIF1B Kines 98.2 7.6E-07 1.7E-11 88.3 2.9 70 125-201 44-129 (356)
41 KOG0242|consensus 98.2 7.9E-07 1.7E-11 94.5 2.9 55 142-203 75-129 (675)
42 cd01372 KISc_KIF4 Kinesin moto 98.2 1.6E-06 3.6E-11 85.4 4.8 75 128-203 39-122 (341)
43 cd01364 KISc_BimC_Eg5 Kinesin 98.2 1.2E-06 2.7E-11 86.7 3.8 72 126-197 45-129 (352)
44 cd01376 KISc_KID_like Kinesin 98.2 1.1E-06 2.3E-11 86.0 3.0 65 126-197 44-117 (319)
45 KOG0240|consensus 98.1 2.2E-06 4.8E-11 86.9 4.7 77 129-209 49-134 (607)
46 cd01375 KISc_KIF9_like Kinesin 98.1 1.7E-06 3.8E-11 85.1 3.5 70 127-201 46-124 (334)
47 cd01369 KISc_KHC_KIF5 Kinesin 98.0 4.9E-06 1.1E-10 81.5 5.1 73 126-202 40-121 (325)
48 cd01374 KISc_CENP_E Kinesin mo 98.0 2.7E-06 5.9E-11 83.2 3.1 69 126-201 37-114 (321)
49 KOG0247|consensus 98.0 5.1E-06 1.1E-10 86.5 3.5 51 144-197 105-155 (809)
50 KOG0245|consensus 98.0 5.5E-06 1.2E-10 88.8 3.8 88 144-241 78-167 (1221)
51 PF00225 Kinesin: Kinesin moto 97.9 2.7E-06 5.9E-11 83.5 0.7 71 124-201 36-117 (335)
52 cd01366 KISc_C_terminal Kinesi 97.9 9.6E-06 2.1E-10 79.6 3.7 77 118-201 34-118 (329)
53 cd01363 Motor_domain Myosin an 97.8 6.4E-06 1.4E-10 74.2 1.0 28 144-171 14-41 (186)
54 cd00106 KISc Kinesin motor dom 97.7 2.3E-05 4.9E-10 76.8 3.0 69 125-200 41-118 (328)
55 COG5059 KIP1 Kinesin-like prot 97.6 3.3E-05 7.1E-10 81.1 3.2 63 128-197 55-126 (568)
56 smart00129 KISc Kinesin motor, 97.6 4.3E-05 9.4E-10 75.1 3.8 67 127-200 44-119 (335)
57 KOG0246|consensus 97.4 6.2E-05 1.3E-09 76.6 1.8 35 143-177 281-315 (676)
58 KOG0244|consensus 95.9 0.0034 7.3E-08 67.7 1.5 40 275-314 221-263 (913)
59 COG0556 UvrB Helicase subunit 95.2 0.023 5.1E-07 58.3 4.6 98 82-218 3-100 (663)
60 PF00308 Bac_DnaA: Bacterial d 93.9 0.04 8.8E-07 50.9 2.7 51 82-135 3-53 (219)
61 COG2805 PilT Tfp pilus assembl 93.2 0.04 8.8E-07 53.0 1.4 30 104-133 113-142 (353)
62 PRK06893 DNA replication initi 92.6 0.13 2.9E-06 47.7 3.9 49 81-135 10-58 (229)
63 PRK08116 hypothetical protein; 90.8 0.38 8.3E-06 45.9 5.1 51 82-134 80-132 (268)
64 PRK06620 hypothetical protein; 89.7 0.28 6.2E-06 45.1 3.0 52 80-135 9-63 (214)
65 PRK12377 putative replication 89.6 0.38 8.2E-06 45.4 3.8 50 84-135 71-120 (248)
66 PRK00411 cdc6 cell division co 89.3 0.41 8.8E-06 47.8 4.1 52 82-134 21-73 (394)
67 PRK14086 dnaA chromosomal repl 89.3 0.36 7.8E-06 51.2 3.7 52 81-135 282-333 (617)
68 TIGR02928 orc1/cdc6 family rep 89.1 0.35 7.6E-06 47.7 3.4 50 84-134 8-58 (365)
69 COG2804 PulE Type II secretory 88.7 0.18 4E-06 51.7 1.1 33 104-136 246-278 (500)
70 PRK00149 dnaA chromosomal repl 88.5 0.28 6E-06 50.3 2.3 52 81-135 116-167 (450)
71 PRK14088 dnaA chromosomal repl 88.0 0.41 8.9E-06 49.0 3.1 51 81-135 99-149 (440)
72 PF04851 ResIII: Type III rest 87.7 0.35 7.5E-06 42.0 2.1 36 96-135 8-44 (184)
73 COG1484 DnaC DNA replication p 87.7 2.2 4.7E-05 40.4 7.6 50 82-134 74-123 (254)
74 TIGR00362 DnaA chromosomal rep 87.6 0.45 9.8E-06 48.0 3.1 52 81-135 104-155 (405)
75 PRK05642 DNA replication initi 87.4 0.58 1.3E-05 43.6 3.5 48 80-134 12-63 (234)
76 PRK09087 hypothetical protein; 87.2 0.48 1E-05 44.0 2.8 50 79-134 13-62 (226)
77 PRK07952 DNA replication prote 87.0 0.61 1.3E-05 43.9 3.4 51 83-135 68-118 (244)
78 PRK06835 DNA replication prote 86.6 0.4 8.8E-06 47.2 2.1 36 98-135 167-202 (329)
79 PRK06526 transposase; Provisio 86.2 0.51 1.1E-05 44.7 2.5 46 83-135 72-117 (254)
80 PRK08084 DNA replication initi 86.1 0.81 1.8E-05 42.6 3.7 50 80-135 15-64 (235)
81 smart00763 AAA_PrkA PrkA AAA d 85.8 1.6 3.5E-05 43.4 5.8 90 82-193 44-142 (361)
82 PRK14087 dnaA chromosomal repl 85.6 0.52 1.1E-05 48.4 2.4 50 83-135 111-160 (450)
83 COG1474 CDC6 Cdc6-related prot 85.4 0.66 1.4E-05 46.4 2.9 27 108-134 33-60 (366)
84 PRK08181 transposase; Validate 85.1 0.99 2.1E-05 43.2 3.8 45 86-135 80-125 (269)
85 cd00009 AAA The AAA+ (ATPases 84.7 0.67 1.5E-05 38.0 2.2 25 109-133 12-36 (151)
86 KOG0989|consensus 84.3 0.83 1.8E-05 44.3 2.9 52 83-134 23-75 (346)
87 COG0593 DnaA ATPase involved i 84.3 0.65 1.4E-05 46.9 2.3 54 78-134 78-131 (408)
88 PRK08939 primosomal protein Dn 84.3 0.86 1.9E-05 44.4 3.1 51 84-135 124-175 (306)
89 TIGR03420 DnaA_homol_Hda DnaA 84.2 1.2 2.6E-05 40.6 3.9 48 81-134 9-56 (226)
90 PF13245 AAA_19: Part of AAA d 83.1 0.53 1.1E-05 36.0 0.9 26 109-135 4-29 (76)
91 TIGR02903 spore_lon_C ATP-depe 82.9 2.7 5.9E-05 44.9 6.4 42 84-133 151-192 (615)
92 PRK08727 hypothetical protein; 82.5 1 2.2E-05 41.9 2.7 19 117-135 42-60 (233)
93 PRK08903 DnaA regulatory inact 82.2 1.2 2.6E-05 40.9 3.0 49 81-134 12-60 (227)
94 PRK10436 hypothetical protein; 82.1 0.61 1.3E-05 48.1 1.1 27 108-134 210-236 (462)
95 COG5008 PilU Tfp pilus assembl 81.3 0.93 2E-05 43.2 2.0 34 100-133 110-144 (375)
96 cd00046 DEXDc DEAD-like helica 81.1 0.52 1.1E-05 38.2 0.2 17 119-135 3-19 (144)
97 TIGR00631 uvrb excinuclease AB 80.6 1.4 3E-05 47.5 3.2 47 84-135 2-48 (655)
98 TIGR02538 type_IV_pilB type IV 80.3 0.72 1.6E-05 48.8 1.0 29 107-135 307-335 (564)
99 PF06309 Torsin: Torsin; Inte 79.9 0.75 1.6E-05 38.8 0.8 28 106-133 39-70 (127)
100 TIGR02533 type_II_gspE general 79.8 0.87 1.9E-05 47.2 1.4 29 107-135 233-261 (486)
101 PF13401 AAA_22: AAA domain; P 79.4 0.57 1.2E-05 38.6 -0.1 18 116-133 4-21 (131)
102 PTZ00112 origin recognition co 79.4 1.7 3.6E-05 48.1 3.3 22 114-135 779-800 (1164)
103 PF05970 PIF1: PIF1-like helic 79.1 1.2 2.6E-05 44.4 2.0 37 93-133 3-39 (364)
104 PRK06921 hypothetical protein; 78.7 2 4.3E-05 40.9 3.3 36 99-135 98-136 (266)
105 PF01935 DUF87: Domain of unkn 78.7 0.67 1.5E-05 42.6 0.1 16 119-134 26-41 (229)
106 PRK12422 chromosomal replicati 78.5 1.9 4.1E-05 44.3 3.3 52 81-135 105-160 (445)
107 TIGR01420 pilT_fam pilus retra 78.4 1 2.2E-05 44.5 1.3 28 107-134 113-140 (343)
108 PF13604 AAA_30: AAA domain; P 78.2 1.1 2.4E-05 40.5 1.4 27 108-134 10-36 (196)
109 KOG0335|consensus 78.0 1.2 2.7E-05 45.6 1.8 82 111-216 108-189 (482)
110 PF01695 IstB_IS21: IstB-like 77.9 1.5 3.3E-05 39.1 2.2 19 117-135 48-66 (178)
111 TIGR02525 plasmid_TraJ plasmid 77.6 1.2 2.5E-05 44.7 1.5 20 115-134 148-167 (372)
112 PF00437 T2SE: Type II/IV secr 77.6 0.97 2.1E-05 42.7 0.9 19 116-134 127-145 (270)
113 PF12846 AAA_10: AAA-like doma 77.3 0.8 1.7E-05 43.2 0.2 19 116-134 1-19 (304)
114 PF00270 DEAD: DEAD/DEAH box h 77.2 1.7 3.6E-05 37.3 2.2 25 109-135 9-33 (169)
115 cd01131 PilT Pilus retraction 77.2 0.82 1.8E-05 41.4 0.2 18 117-134 2-19 (198)
116 TIGR02524 dot_icm_DotB Dot/Icm 76.6 1.3 2.7E-05 44.2 1.3 23 112-134 130-152 (358)
117 cd01129 PulE-GspE PulE/GspE Th 75.1 1.5 3.3E-05 41.7 1.4 27 108-134 72-98 (264)
118 smart00382 AAA ATPases associa 74.9 1 2.2E-05 36.4 0.2 19 117-135 3-21 (148)
119 TIGR03015 pepcterm_ATPase puta 73.8 1.9 4.1E-05 40.4 1.8 23 112-134 39-61 (269)
120 PRK09183 transposase/IS protei 73.3 2.2 4.7E-05 40.5 2.0 43 87-134 78-120 (259)
121 COG1201 Lhr Lhr-like helicases 73.2 3.4 7.3E-05 45.4 3.6 23 108-132 31-53 (814)
122 PF00448 SRP54: SRP54-type pro 72.1 1.2 2.7E-05 40.4 -0.0 17 118-134 3-19 (196)
123 PRK13894 conjugal transfer ATP 71.5 2 4.4E-05 42.1 1.4 28 106-134 139-166 (319)
124 PLN00020 ribulose bisphosphate 71.5 3.8 8.1E-05 41.1 3.2 51 82-132 110-164 (413)
125 PRK11331 5-methylcytosine-spec 70.6 4.6 0.0001 41.4 3.7 25 107-133 187-211 (459)
126 PRK12723 flagellar biosynthesi 70.3 3.9 8.5E-05 41.2 3.1 19 116-134 174-192 (388)
127 PHA00729 NTP-binding motif con 69.8 3.4 7.4E-05 38.5 2.4 31 104-134 5-35 (226)
128 PF13479 AAA_24: AAA domain 69.3 1.8 4E-05 39.6 0.5 20 116-135 3-22 (213)
129 PRK12402 replication factor C 69.1 3.3 7.2E-05 40.1 2.3 42 85-134 13-54 (337)
130 PF01637 Arch_ATPase: Archaeal 68.8 2.3 5.1E-05 38.2 1.1 29 106-134 10-38 (234)
131 PF02562 PhoH: PhoH-like prote 68.6 3.3 7.2E-05 37.9 2.1 20 115-134 18-37 (205)
132 PF00004 AAA: ATPase family as 68.5 2.2 4.7E-05 34.8 0.8 15 119-133 1-15 (132)
133 COG1222 RPT1 ATP-dependent 26S 68.5 4.8 0.0001 40.0 3.2 81 96-200 160-245 (406)
134 smart00487 DEXDc DEAD-like hel 68.3 2.1 4.5E-05 37.0 0.6 35 92-135 9-43 (201)
135 PF13086 AAA_11: AAA domain; P 67.8 2.1 4.6E-05 38.5 0.6 18 118-135 19-36 (236)
136 TIGR02782 TrbB_P P-type conjug 66.5 2.7 5.9E-05 40.7 1.1 28 106-134 123-150 (299)
137 PRK03992 proteasome-activating 66.5 2.6 5.7E-05 42.4 1.0 18 116-133 165-182 (389)
138 PF13207 AAA_17: AAA domain; P 66.4 2.5 5.5E-05 34.3 0.7 16 118-133 1-16 (121)
139 PF05496 RuvB_N: Holliday junc 66.1 9.3 0.0002 35.7 4.4 40 90-130 23-64 (233)
140 PF00580 UvrD-helicase: UvrD/R 66.1 2.4 5.1E-05 40.3 0.6 21 115-135 12-32 (315)
141 TIGR03499 FlhF flagellar biosy 65.8 5.4 0.00012 38.2 3.0 18 118-135 196-213 (282)
142 COG1223 Predicted ATPase (AAA+ 65.8 3.3 7.1E-05 39.6 1.4 18 116-133 151-168 (368)
143 PF13671 AAA_33: AAA domain; P 65.6 2.7 5.8E-05 35.1 0.7 15 119-133 2-16 (143)
144 KOG0727|consensus 65.4 1.9 4.1E-05 40.9 -0.2 91 86-200 154-249 (408)
145 PHA02544 44 clamp loader, smal 65.3 3.4 7.4E-05 39.8 1.5 22 113-134 39-61 (316)
146 TIGR01242 26Sp45 26S proteasom 64.6 1.9 4.1E-05 42.9 -0.4 18 117-134 157-174 (364)
147 PF01580 FtsK_SpoIIIE: FtsK/Sp 64.3 2.1 4.6E-05 38.6 -0.1 17 118-134 40-56 (205)
148 PTZ00454 26S protease regulato 64.0 3.4 7.4E-05 41.8 1.3 50 84-133 142-196 (398)
149 cd01130 VirB11-like_ATPase Typ 63.7 4 8.7E-05 36.3 1.6 27 106-133 16-42 (186)
150 PRK10536 hypothetical protein; 63.0 4.2 9.1E-05 38.7 1.6 43 82-134 50-92 (262)
151 PRK06547 hypothetical protein; 62.7 5.9 0.00013 35.1 2.4 29 105-133 4-32 (172)
152 PF00063 Myosin_head: Myosin h 62.4 4.7 0.0001 43.7 2.1 36 97-133 66-102 (689)
153 PRK13833 conjugal transfer pro 62.4 4.2 9.2E-05 39.9 1.6 27 107-134 136-162 (323)
154 PF13191 AAA_16: AAA ATPase do 62.3 2 4.4E-05 37.4 -0.6 22 112-133 20-41 (185)
155 PF07693 KAP_NTPase: KAP famil 62.3 4.7 0.0001 38.8 1.9 20 114-133 18-37 (325)
156 TIGR00635 ruvB Holliday juncti 62.1 6.5 0.00014 37.7 2.8 44 90-134 3-48 (305)
157 cd00268 DEADc DEAD-box helicas 61.7 5 0.00011 35.7 1.8 31 93-133 23-53 (203)
158 PF00910 RNA_helicase: RNA hel 61.3 2.6 5.5E-05 34.1 -0.1 16 119-134 1-16 (107)
159 PRK04837 ATP-dependent RNA hel 60.9 4.6 0.0001 40.8 1.6 24 108-133 39-62 (423)
160 PF03215 Rad17: Rad17 cell cyc 60.8 4.7 0.0001 42.2 1.7 30 104-133 31-62 (519)
161 PF05673 DUF815: Protein of un 60.8 3.5 7.6E-05 38.9 0.7 48 82-134 22-70 (249)
162 PRK11776 ATP-dependent RNA hel 60.7 6.1 0.00013 40.4 2.5 22 109-132 36-57 (460)
163 COG1419 FlhF Flagellar GTP-bin 60.5 6.6 0.00014 39.6 2.6 38 96-133 179-220 (407)
164 PF07724 AAA_2: AAA domain (Cd 60.3 3.2 7E-05 36.8 0.3 17 117-133 4-20 (171)
165 COG3829 RocR Transcriptional r 59.5 9.8 0.00021 39.8 3.6 138 80-224 238-398 (560)
166 PRK10416 signal recognition pa 59.5 7.8 0.00017 37.9 2.9 19 116-134 114-132 (318)
167 PF13238 AAA_18: AAA domain; P 59.1 4.1 8.9E-05 33.0 0.7 15 119-133 1-15 (129)
168 COG4962 CpaF Flp pilus assembl 59.0 4.8 0.0001 39.7 1.3 26 107-133 165-190 (355)
169 PRK13900 type IV secretion sys 59.0 5.2 0.00011 39.4 1.6 28 106-134 151-178 (332)
170 PRK10590 ATP-dependent RNA hel 59.0 5.6 0.00012 40.7 1.9 24 108-133 32-55 (456)
171 PLN03025 replication factor C 58.3 5.9 0.00013 38.5 1.8 22 114-135 32-53 (319)
172 PRK13851 type IV secretion sys 58.2 3.5 7.7E-05 40.8 0.2 28 106-134 153-180 (344)
173 PF07728 AAA_5: AAA domain (dy 58.0 4.5 9.7E-05 33.8 0.8 15 119-133 2-16 (139)
174 PF06048 DUF927: Domain of unk 57.7 7.4 0.00016 37.3 2.4 29 104-133 182-210 (286)
175 PF06414 Zeta_toxin: Zeta toxi 57.0 3.8 8.2E-05 36.9 0.2 21 114-134 13-33 (199)
176 PTZ00424 helicase 45; Provisio 56.9 7.6 0.00016 38.7 2.4 25 107-133 58-82 (401)
177 PRK14722 flhF flagellar biosyn 56.7 3.9 8.6E-05 41.0 0.3 19 116-134 137-155 (374)
178 KOG2543|consensus 56.7 3.7 8.1E-05 41.1 0.1 23 118-140 32-54 (438)
179 CHL00081 chlI Mg-protoporyphyr 56.7 4.7 0.0001 40.1 0.8 46 82-135 12-57 (350)
180 PRK13764 ATPase; Provisional 56.6 5.1 0.00011 42.7 1.1 21 115-135 256-276 (602)
181 PRK05580 primosome assembly pr 56.6 6.9 0.00015 42.4 2.1 42 86-134 139-180 (679)
182 TIGR02902 spore_lonB ATP-depen 55.9 9.8 0.00021 40.0 3.1 42 84-133 62-103 (531)
183 KOG0336|consensus 55.9 16 0.00034 37.1 4.2 63 63-132 200-273 (629)
184 PRK00771 signal recognition pa 55.8 11 0.00025 38.5 3.4 19 116-134 95-113 (437)
185 smart00242 MYSc Myosin. Large 55.6 10 0.00022 41.1 3.2 36 97-133 73-109 (677)
186 TIGR02881 spore_V_K stage V sp 55.5 4.3 9.4E-05 38.2 0.3 17 117-133 43-59 (261)
187 COG4152 ABC-type uncharacteriz 55.4 4.3 9.2E-05 38.5 0.2 54 122-187 34-87 (300)
188 PRK11448 hsdR type I restricti 55.4 6.4 0.00014 45.1 1.7 30 106-136 424-453 (1123)
189 PRK00440 rfc replication facto 54.7 8.7 0.00019 36.8 2.3 21 113-133 35-55 (319)
190 PRK11192 ATP-dependent RNA hel 54.0 9.1 0.0002 38.8 2.4 23 108-132 32-54 (434)
191 cd01383 MYSc_type_VIII Myosin 53.9 12 0.00027 40.5 3.5 35 98-133 74-109 (677)
192 cd01381 MYSc_type_VII Myosin m 53.1 13 0.00028 40.3 3.5 36 97-133 67-103 (671)
193 COG1219 ClpX ATP-dependent pro 53.0 6.1 0.00013 38.8 0.9 15 117-131 98-112 (408)
194 cd01384 MYSc_type_XI Myosin mo 52.8 12 0.00027 40.5 3.2 21 113-133 85-105 (674)
195 PRK14974 cell division protein 52.5 15 0.00032 36.4 3.5 19 116-134 140-158 (336)
196 PRK04328 hypothetical protein; 52.4 9.7 0.00021 35.7 2.2 25 106-130 10-37 (249)
197 PRK13342 recombination factor 52.4 8.5 0.00018 39.0 1.9 40 94-134 15-54 (413)
198 cd00124 MYSc Myosin motor doma 51.9 12 0.00027 40.5 3.1 36 97-133 67-103 (679)
199 cd01385 MYSc_type_IX Myosin mo 51.8 13 0.00028 40.4 3.2 36 97-133 75-111 (692)
200 cd01382 MYSc_type_VI Myosin mo 51.5 13 0.00027 40.7 3.1 35 98-133 73-108 (717)
201 cd01378 MYSc_type_I Myosin mot 51.4 14 0.0003 40.1 3.4 35 98-133 68-103 (674)
202 TIGR00348 hsdR type I site-spe 51.4 9.7 0.00021 41.2 2.2 32 104-136 247-283 (667)
203 PRK10917 ATP-dependent DNA hel 51.3 12 0.00027 40.5 3.0 40 90-133 260-299 (681)
204 cd01377 MYSc_type_II Myosin mo 51.2 13 0.00028 40.5 3.1 36 97-133 72-108 (693)
205 PRK10865 protein disaggregatio 51.1 17 0.00038 40.5 4.2 17 117-133 599-615 (857)
206 TIGR02237 recomb_radB DNA repa 50.6 8 0.00017 34.8 1.3 24 109-132 2-28 (209)
207 TIGR03158 cas3_cyano CRISPR-as 50.4 13 0.00027 36.9 2.7 24 110-133 8-31 (357)
208 TIGR01817 nifA Nif-specific re 50.4 17 0.00037 38.1 3.8 47 81-133 190-236 (534)
209 cd01380 MYSc_type_V Myosin mot 50.1 14 0.0003 40.2 3.2 35 98-133 68-103 (691)
210 KOG0953|consensus 50.0 7.4 0.00016 40.8 1.0 17 118-134 193-209 (700)
211 TIGR01241 FtsH_fam ATP-depende 49.8 11 0.00025 39.0 2.4 51 82-133 50-105 (495)
212 PTZ00361 26 proteosome regulat 49.6 6.1 0.00013 40.5 0.3 16 118-133 219-234 (438)
213 cd01387 MYSc_type_XV Myosin mo 49.6 16 0.00034 39.7 3.5 36 97-133 68-104 (677)
214 PRK04537 ATP-dependent RNA hel 49.4 9.6 0.00021 40.4 1.8 24 108-133 40-63 (572)
215 cd01123 Rad51_DMC1_radA Rad51_ 49.3 11 0.00024 34.5 2.0 28 106-133 6-36 (235)
216 PRK11634 ATP-dependent RNA hel 48.4 12 0.00027 40.1 2.5 24 108-133 37-60 (629)
217 TIGR01618 phage_P_loop phage n 48.3 6.9 0.00015 36.2 0.4 20 116-135 12-31 (220)
218 PHA02653 RNA helicase NPH-II; 48.2 18 0.00039 39.2 3.6 33 94-132 163-195 (675)
219 KOG1803|consensus 47.7 7.5 0.00016 41.0 0.7 18 117-134 202-219 (649)
220 KOG0736|consensus 47.7 23 0.00051 38.7 4.3 21 180-200 786-806 (953)
221 TIGR02640 gas_vesic_GvpN gas v 47.6 18 0.00039 34.1 3.2 24 108-133 15-38 (262)
222 PF10236 DAP3: Mitochondrial r 47.4 11 0.00024 36.7 1.7 25 112-136 19-43 (309)
223 PRK04195 replication factor C 46.9 8.2 0.00018 39.9 0.8 29 105-133 27-56 (482)
224 PHA02244 ATPase-like protein 46.7 18 0.00039 36.3 3.1 19 113-133 118-136 (383)
225 PF00735 Septin: Septin; Inte 46.7 7.1 0.00015 37.5 0.3 21 113-133 1-21 (281)
226 PRK11889 flhF flagellar biosyn 46.1 17 0.00037 36.9 2.9 18 117-134 242-259 (436)
227 PRK00080 ruvB Holliday junctio 46.1 18 0.00039 35.2 3.0 40 94-134 28-69 (328)
228 PRK01297 ATP-dependent RNA hel 46.0 12 0.00026 38.4 1.9 26 106-133 116-141 (475)
229 PRK13341 recombination factor 45.6 13 0.00028 40.6 2.1 22 113-134 49-70 (725)
230 PRK06067 flagellar accessory p 45.5 14 0.00031 33.9 2.1 27 106-132 12-41 (234)
231 COG2256 MGS1 ATPase related to 45.2 11 0.00023 38.1 1.3 38 92-130 25-62 (436)
232 PF02456 Adeno_IVa2: Adenoviru 45.1 7.7 0.00017 37.9 0.2 16 119-134 90-105 (369)
233 PRK09361 radB DNA repair and r 44.9 16 0.00034 33.3 2.3 29 105-133 9-40 (225)
234 TIGR00614 recQ_fam ATP-depende 44.7 17 0.00036 37.5 2.7 24 108-133 20-43 (470)
235 PF12001 DUF3496: Domain of un 44.7 1.7E+02 0.0038 24.1 8.0 46 13-59 6-54 (111)
236 cd02021 GntK Gluconate kinase 44.7 9.5 0.00021 32.2 0.7 14 119-132 2-15 (150)
237 PRK00131 aroK shikimate kinase 44.3 9.9 0.00022 32.6 0.8 16 117-132 5-20 (175)
238 cd01126 TraG_VirD4 The TraG/Tr 44.0 13 0.00028 37.2 1.6 16 119-134 2-17 (384)
239 PRK05703 flhF flagellar biosyn 43.9 7.9 0.00017 39.5 0.1 18 117-134 222-239 (424)
240 smart00489 DEXDc3 DEAD-like he 43.9 15 0.00032 35.4 1.9 39 90-134 7-45 (289)
241 smart00488 DEXDc2 DEAD-like he 43.9 15 0.00032 35.4 1.9 39 90-134 7-45 (289)
242 PF12775 AAA_7: P-loop contain 43.8 12 0.00027 35.7 1.4 20 116-135 33-52 (272)
243 PRK06995 flhF flagellar biosyn 43.7 7.9 0.00017 40.2 0.1 18 117-134 257-274 (484)
244 CHL00181 cbbX CbbX; Provisiona 43.5 16 0.00035 35.1 2.2 15 119-133 62-76 (287)
245 TIGR01359 UMP_CMP_kin_fam UMP- 43.4 10 0.00022 33.2 0.8 14 119-132 2-15 (183)
246 TIGR00376 DNA helicase, putati 43.3 12 0.00026 40.3 1.4 18 118-135 175-192 (637)
247 COG1125 OpuBA ABC-type proline 43.2 6.6 0.00014 37.4 -0.5 12 122-133 33-44 (309)
248 cd00464 SK Shikimate kinase (S 43.1 11 0.00023 31.8 0.8 15 118-132 1-15 (154)
249 COG3842 PotA ABC-type spermidi 43.0 7.1 0.00015 38.8 -0.4 13 121-133 36-48 (352)
250 cd01120 RecA-like_NTPases RecA 42.7 11 0.00023 31.6 0.7 15 119-133 2-16 (165)
251 TIGR00643 recG ATP-dependent D 42.7 20 0.00044 38.4 3.0 40 90-133 234-273 (630)
252 PF05729 NACHT: NACHT domain 42.3 9.1 0.0002 32.3 0.2 17 118-134 2-18 (166)
253 PHA02624 large T antigen; Prov 42.3 21 0.00046 38.1 3.0 28 106-133 419-448 (647)
254 PLN00206 DEAD-box ATP-dependen 41.9 21 0.00045 37.3 2.9 23 108-132 152-174 (518)
255 cd01386 MYSc_type_XVIII Myosin 41.8 22 0.00047 39.2 3.1 35 98-133 68-103 (767)
256 KOG2373|consensus 41.6 24 0.00052 35.2 3.0 28 106-134 261-291 (514)
257 TIGR01243 CDC48 AAA family ATP 41.5 14 0.00031 40.3 1.6 51 83-133 174-229 (733)
258 PF10923 DUF2791: P-loop Domai 41.4 22 0.00047 36.2 2.8 39 95-134 29-67 (416)
259 TIGR01650 PD_CobS cobaltochela 41.4 18 0.00038 35.7 2.1 26 106-133 56-81 (327)
260 COG0606 Predicted ATPase with 41.3 18 0.00039 37.3 2.2 23 109-133 193-215 (490)
261 PRK14961 DNA polymerase III su 41.2 16 0.00034 36.4 1.7 17 117-133 39-55 (363)
262 PRK07261 topology modulation p 41.1 12 0.00026 32.9 0.8 14 119-132 3-16 (171)
263 KOG0340|consensus 40.6 16 0.00035 36.3 1.7 30 105-136 35-64 (442)
264 PRK11057 ATP-dependent DNA hel 40.5 18 0.00038 38.7 2.1 22 109-132 35-56 (607)
265 KOG0729|consensus 40.4 14 0.00031 35.4 1.2 18 114-131 207-226 (435)
266 COG0556 UvrB Helicase subunit 40.1 12 0.00025 39.2 0.6 93 129-225 3-99 (663)
267 cd01394 radB RadB. The archaea 40.1 21 0.00046 32.2 2.3 28 106-133 6-36 (218)
268 cd01127 TrwB Bacterial conjuga 39.6 10 0.00022 38.4 0.1 17 117-133 43-59 (410)
269 PRK06696 uridine kinase; Valid 39.5 27 0.00058 31.9 2.9 28 105-132 8-38 (223)
270 TIGR01313 therm_gnt_kin carboh 39.5 12 0.00026 32.2 0.5 14 119-132 1-14 (163)
271 PRK10867 signal recognition pa 39.5 31 0.00067 35.4 3.6 18 116-133 100-117 (433)
272 PRK15429 formate hydrogenlyase 39.5 18 0.0004 39.1 2.1 44 84-133 373-416 (686)
273 PRK10820 DNA-binding transcrip 39.1 18 0.00039 37.8 1.9 46 82-133 199-244 (520)
274 KOG0926|consensus 39.0 16 0.00035 40.0 1.5 19 115-133 270-288 (1172)
275 TIGR02746 TraC-F-type type-IV 39.0 11 0.00023 41.5 0.2 19 116-134 430-448 (797)
276 TIGR02030 BchI-ChlI magnesium 39.0 15 0.00033 36.2 1.3 43 84-134 1-43 (337)
277 TIGR02788 VirB11 P-type DNA tr 38.9 17 0.00037 35.2 1.6 28 105-133 134-161 (308)
278 PRK12724 flagellar biosynthesi 38.9 24 0.00053 36.0 2.7 18 117-134 224-241 (432)
279 CHL00176 ftsH cell division pr 38.8 16 0.00034 39.4 1.4 51 82-133 178-233 (638)
280 TIGR03819 heli_sec_ATPase heli 38.6 18 0.00038 35.8 1.6 29 104-133 167-195 (340)
281 cd01850 CDC_Septin CDC/Septin. 38.4 11 0.00024 36.0 0.2 21 113-133 1-21 (276)
282 COG1198 PriA Primosomal protei 38.4 26 0.00057 38.3 3.0 36 93-134 200-235 (730)
283 TIGR03744 traC_PFL_4706 conjug 38.4 11 0.00024 42.2 0.2 20 115-134 474-493 (893)
284 PRK14964 DNA polymerase III su 38.2 19 0.0004 37.5 1.8 23 111-133 29-52 (491)
285 PF13173 AAA_14: AAA domain 38.2 12 0.00025 31.0 0.3 17 118-134 4-20 (128)
286 TIGR00064 ftsY signal recognit 38.1 12 0.00026 35.7 0.4 18 117-134 73-90 (272)
287 cd01124 KaiC KaiC is a circadi 38.1 15 0.00033 32.0 1.0 14 119-132 2-15 (187)
288 PF13476 AAA_23: AAA domain; P 38.1 11 0.00024 33.0 0.1 17 117-133 20-36 (202)
289 PRK15424 propionate catabolism 38.1 20 0.00043 37.8 2.0 45 83-133 215-259 (538)
290 PRK10689 transcription-repair 38.0 28 0.0006 40.2 3.3 39 90-132 599-637 (1147)
291 cd01428 ADK Adenylate kinase ( 37.9 14 0.00031 32.5 0.8 14 119-132 2-15 (194)
292 PF13555 AAA_29: P-loop contai 37.9 17 0.00036 26.7 1.0 15 119-133 26-40 (62)
293 TIGR02329 propionate_PrpR prop 37.8 19 0.00041 37.8 1.8 45 83-133 208-252 (526)
294 KOG0739|consensus 37.8 14 0.00031 36.0 0.8 48 86-133 132-183 (439)
295 KOG0734|consensus 37.7 33 0.00071 36.2 3.4 59 118-200 339-397 (752)
296 COG5019 CDC3 Septin family pro 37.4 18 0.00038 36.1 1.4 36 342-377 327-362 (373)
297 COG4096 HsdR Type I site-speci 37.4 36 0.00077 37.5 3.7 38 97-135 166-204 (875)
298 CHL00195 ycf46 Ycf46; Provisio 37.3 12 0.00026 38.9 0.3 17 117-133 260-276 (489)
299 cd01379 MYSc_type_III Myosin m 37.2 29 0.00063 37.5 3.1 35 98-133 68-103 (653)
300 COG0552 FtsY Signal recognitio 37.2 15 0.00033 36.2 0.9 20 114-133 137-156 (340)
301 PRK01172 ski2-like helicase; P 37.2 23 0.00049 38.3 2.3 31 92-132 23-53 (674)
302 cd01393 recA_like RecA is a b 37.1 27 0.00058 31.7 2.5 28 106-133 6-36 (226)
303 KOG0652|consensus 37.0 16 0.00034 35.0 1.0 13 118-130 207-219 (424)
304 TIGR00580 mfd transcription-re 37.0 33 0.00071 38.7 3.6 39 91-133 451-489 (926)
305 PRK08118 topology modulation p 37.0 15 0.00033 32.2 0.8 12 119-130 4-15 (167)
306 TIGR01425 SRP54_euk signal rec 37.0 34 0.00075 35.0 3.4 19 116-134 100-118 (429)
307 PTZ00014 myosin-A; Provisional 36.9 30 0.00064 38.4 3.2 34 99-133 166-200 (821)
308 PF00158 Sigma54_activat: Sigm 36.6 34 0.00073 30.1 3.0 20 113-132 19-38 (168)
309 TIGR02880 cbbX_cfxQ probable R 36.6 15 0.00032 35.3 0.7 15 119-133 61-75 (284)
310 TIGR01389 recQ ATP-dependent D 36.3 26 0.00057 37.2 2.6 24 108-133 22-45 (591)
311 KOG3859|consensus 36.3 14 0.00031 35.6 0.5 24 110-133 36-59 (406)
312 PRK04040 adenylate kinase; Pro 36.3 16 0.00034 32.9 0.8 16 118-133 4-19 (188)
313 KOG1514|consensus 36.2 24 0.00052 38.1 2.2 32 107-138 411-444 (767)
314 COG0467 RAD55 RecA-superfamily 36.1 23 0.0005 33.2 2.0 23 108-130 12-37 (260)
315 KOG0354|consensus 35.9 22 0.00048 38.6 2.0 43 87-132 44-92 (746)
316 TIGR03117 cas_csf4 CRISPR-asso 35.8 30 0.00065 37.2 2.9 33 95-133 1-33 (636)
317 PRK08233 hypothetical protein; 35.8 16 0.00034 31.7 0.7 15 119-133 6-20 (182)
318 PRK14531 adenylate kinase; Pro 35.7 16 0.00035 32.3 0.8 14 119-132 5-18 (183)
319 KOG4304|consensus 35.7 47 0.001 31.4 3.9 35 336-370 46-81 (250)
320 PF00931 NB-ARC: NB-ARC domain 35.7 37 0.0008 31.8 3.3 30 104-133 5-36 (287)
321 PRK06217 hypothetical protein; 35.6 16 0.00035 32.3 0.7 13 119-131 4-16 (183)
322 PRK14723 flhF flagellar biosyn 35.6 13 0.00029 40.7 0.2 18 117-134 186-203 (767)
323 PRK12726 flagellar biosynthesi 35.5 13 0.00028 37.6 0.1 19 117-135 207-225 (407)
324 PRK14721 flhF flagellar biosyn 35.1 15 0.00031 37.6 0.4 18 116-133 191-208 (420)
325 PRK09270 nucleoside triphospha 35.0 43 0.00093 30.7 3.5 36 98-133 14-50 (229)
326 TIGR03877 thermo_KaiC_1 KaiC d 34.9 28 0.0006 32.2 2.3 25 106-130 8-35 (237)
327 PF14532 Sigma54_activ_2: Sigm 34.8 20 0.00042 30.1 1.1 21 113-133 18-38 (138)
328 TIGR02236 recomb_radA DNA repa 34.7 28 0.00061 33.6 2.3 28 106-133 82-112 (310)
329 cd02020 CMPK Cytidine monophos 34.5 19 0.00042 29.8 1.0 13 119-131 2-14 (147)
330 PF06745 KaiC: KaiC; InterPro 34.3 21 0.00044 32.6 1.3 23 108-130 8-33 (226)
331 TIGR03881 KaiC_arch_4 KaiC dom 34.2 26 0.00057 31.9 2.0 28 106-133 7-37 (229)
332 KOG0742|consensus 34.2 19 0.00042 36.6 1.1 13 118-130 386-398 (630)
333 PRK14962 DNA polymerase III su 34.1 27 0.00059 36.1 2.2 41 85-133 12-53 (472)
334 PRK14970 DNA polymerase III su 34.0 31 0.00068 34.0 2.6 27 107-133 29-56 (367)
335 cd01983 Fer4_NifH The Fer4_Nif 33.8 16 0.00034 27.5 0.4 16 119-134 2-17 (99)
336 PF12774 AAA_6: Hydrolytic ATP 33.7 15 0.00033 34.2 0.3 18 117-134 33-50 (231)
337 TIGR02397 dnaX_nterm DNA polym 33.6 31 0.00068 33.6 2.5 36 94-133 17-53 (355)
338 PF04548 AIG1: AIG1 family; I 33.5 14 0.00031 33.6 0.0 16 118-133 2-17 (212)
339 cd02025 PanK Pantothenate kina 33.5 11 0.00024 34.7 -0.7 12 122-133 5-16 (220)
340 PF02534 T4SS-DNA_transf: Type 33.4 26 0.00056 35.8 2.0 17 117-133 45-61 (469)
341 PF10412 TrwB_AAD_bind: Type I 33.3 14 0.0003 37.2 -0.1 18 117-134 16-33 (386)
342 TIGR01360 aden_kin_iso1 adenyl 33.2 19 0.00041 31.4 0.8 16 118-133 5-20 (188)
343 PF02367 UPF0079: Uncharacteri 33.1 37 0.0008 28.5 2.5 19 117-135 16-34 (123)
344 TIGR00602 rad24 checkpoint pro 33.0 25 0.00053 37.9 1.7 17 118-134 112-128 (637)
345 TIGR02322 phosphon_PhnN phosph 33.0 15 0.00032 32.1 0.0 16 118-133 3-18 (179)
346 TIGR02173 cyt_kin_arch cytidyl 32.9 19 0.00041 30.9 0.7 16 118-133 2-17 (171)
347 PRK06762 hypothetical protein; 32.8 19 0.00041 31.0 0.7 14 118-131 4-17 (166)
348 cd02027 APSK Adenosine 5'-phos 32.8 19 0.00042 30.8 0.8 14 119-132 2-15 (149)
349 TIGR00763 lon ATP-dependent pr 32.7 19 0.00041 39.7 0.9 16 118-133 349-364 (775)
350 TIGR03689 pup_AAA proteasome A 32.7 18 0.0004 37.8 0.7 16 118-133 218-233 (512)
351 KOG0745|consensus 32.5 21 0.00046 36.6 1.0 31 117-157 227-257 (564)
352 KOG0651|consensus 32.4 13 0.00028 36.4 -0.4 53 80-132 125-182 (388)
353 PF08477 Miro: Miro-like prote 32.2 23 0.00049 28.3 1.0 15 119-133 2-16 (119)
354 TIGR01613 primase_Cterm phage/ 32.2 23 0.0005 34.1 1.3 29 105-133 62-93 (304)
355 PRK09111 DNA polymerase III su 32.1 26 0.00057 37.4 1.8 23 111-133 40-63 (598)
356 PF07208 DUF1414: Protein of u 32.0 60 0.0013 22.2 2.8 18 337-354 5-22 (44)
357 cd00820 PEPCK_HprK Phosphoenol 32.0 16 0.00035 29.8 0.2 16 118-133 17-32 (107)
358 PRK14955 DNA polymerase III su 32.0 34 0.00073 34.5 2.5 21 113-133 34-55 (397)
359 TIGR02767 TraG-Ti Ti-type conj 31.9 27 0.00059 37.5 1.9 17 117-133 212-228 (623)
360 KOG0730|consensus 31.9 30 0.00064 37.1 2.1 59 118-200 470-528 (693)
361 KOG0328|consensus 31.9 36 0.00078 32.9 2.4 26 106-133 56-81 (400)
362 PF00485 PRK: Phosphoribulokin 31.8 17 0.00037 32.4 0.3 15 119-133 2-16 (194)
363 COG0630 VirB11 Type IV secreto 31.7 16 0.00034 35.7 0.0 20 115-134 142-161 (312)
364 KOG0735|consensus 31.6 20 0.00044 38.9 0.8 19 115-133 700-718 (952)
365 KOG0726|consensus 31.5 18 0.00039 35.2 0.4 21 181-201 260-280 (440)
366 PRK13531 regulatory ATPase Rav 31.4 36 0.00077 35.5 2.5 28 104-133 29-56 (498)
367 KOG1547|consensus 31.3 53 0.0012 31.1 3.4 21 113-134 43-63 (336)
368 PRK04301 radA DNA repair and r 31.3 36 0.00078 33.0 2.5 28 106-133 89-119 (317)
369 PRK14532 adenylate kinase; Pro 31.2 22 0.00047 31.4 0.8 13 119-131 3-15 (188)
370 PRK14952 DNA polymerase III su 31.1 29 0.00062 37.0 1.9 41 85-133 11-52 (584)
371 PRK13767 ATP-dependent helicas 31.1 30 0.00065 38.7 2.1 22 110-133 43-64 (876)
372 PRK05342 clpX ATP-dependent pr 31.1 22 0.00047 36.2 0.9 18 116-133 108-125 (412)
373 COG2805 PilT Tfp pilus assembl 31.1 39 0.00086 33.0 2.6 30 143-172 114-143 (353)
374 PF03670 UPF0184: Uncharacteri 31.0 1.7E+02 0.0037 22.8 5.6 38 329-366 23-60 (83)
375 KOG0348|consensus 31.0 26 0.00056 36.7 1.4 24 106-131 166-189 (708)
376 KOG0987|consensus 31.0 38 0.00083 35.7 2.8 36 93-133 119-154 (540)
377 TIGR03880 KaiC_arch_3 KaiC dom 30.8 33 0.00072 31.2 2.1 26 107-132 4-32 (224)
378 cd03274 ABC_SMC4_euk Eukaryoti 30.8 14 0.00031 33.7 -0.4 15 119-133 28-42 (212)
379 PF00025 Arf: ADP-ribosylation 30.6 33 0.00071 30.0 1.9 28 106-133 3-31 (175)
380 TIGR00929 VirB4_CagE type IV s 30.5 18 0.00038 39.7 0.2 18 116-133 434-451 (785)
381 PRK11608 pspF phage shock prot 30.1 35 0.00075 33.4 2.1 42 86-133 5-46 (326)
382 TIGR02655 circ_KaiC circadian 30.0 31 0.00067 35.8 1.9 25 106-130 8-35 (484)
383 cd02023 UMPK Uridine monophosp 30.0 18 0.00038 32.3 0.0 15 119-133 2-16 (198)
384 TIGR03263 guanyl_kin guanylate 29.9 26 0.00057 30.4 1.2 15 118-132 3-17 (180)
385 PHA01747 putative ATP-dependen 29.8 29 0.00064 34.8 1.5 31 104-134 178-208 (425)
386 TIGR00959 ffh signal recogniti 29.8 22 0.00047 36.4 0.6 18 116-133 99-116 (428)
387 PRK09302 circadian clock prote 29.7 35 0.00076 35.5 2.2 26 106-131 18-46 (509)
388 PRK03839 putative kinase; Prov 29.7 23 0.0005 31.0 0.7 13 119-131 3-15 (180)
389 TIGR02238 recomb_DMC1 meiotic 29.6 42 0.00091 32.8 2.6 27 105-131 82-111 (313)
390 PRK14729 miaA tRNA delta(2)-is 29.4 26 0.00057 34.0 1.2 14 118-131 6-19 (300)
391 cd02019 NK Nucleoside/nucleoti 29.4 28 0.0006 25.6 1.0 15 119-133 2-16 (69)
392 TIGR01074 rep ATP-dependent DN 29.3 24 0.00052 38.0 0.9 21 116-136 14-34 (664)
393 KOG0728|consensus 29.2 30 0.00064 33.0 1.4 28 117-158 182-209 (404)
394 PHA02774 E1; Provisional 28.9 36 0.00078 36.2 2.1 26 108-133 424-451 (613)
395 PRK13889 conjugal transfer rel 28.8 28 0.0006 39.5 1.3 27 107-134 354-380 (988)
396 TIGR00382 clpX endopeptidase C 28.8 25 0.00054 35.8 0.9 17 117-133 117-133 (413)
397 TIGR02858 spore_III_AA stage I 28.6 35 0.00075 32.6 1.8 17 117-133 112-128 (270)
398 PRK06305 DNA polymerase III su 28.6 43 0.00094 34.4 2.6 41 85-133 15-56 (451)
399 PRK11664 ATP-dependent RNA hel 28.4 49 0.0011 36.8 3.1 27 105-133 11-37 (812)
400 COG0513 SrmB Superfamily II DN 28.3 39 0.00084 35.4 2.2 26 106-133 58-83 (513)
401 KOG0741|consensus 28.2 29 0.00064 36.5 1.3 13 119-131 259-271 (744)
402 PRK11034 clpA ATP-dependent Cl 28.1 55 0.0012 36.1 3.4 17 117-133 489-505 (758)
403 PRK13721 conjugal transfer ATP 28.0 21 0.00046 39.7 0.2 19 116-134 449-467 (844)
404 TIGR02639 ClpA ATP-dependent C 28.0 45 0.00098 36.5 2.8 17 117-133 485-501 (731)
405 PRK14530 adenylate kinase; Pro 27.9 26 0.00055 31.8 0.7 14 118-131 5-18 (215)
406 PRK06851 hypothetical protein; 27.7 26 0.00056 35.1 0.8 27 108-134 22-48 (367)
407 PRK05298 excinuclease ABC subu 27.7 37 0.00081 36.6 2.0 49 82-135 3-51 (652)
408 PRK13873 conjugal transfer ATP 27.7 17 0.00036 40.3 -0.6 16 118-133 443-458 (811)
409 cd00983 recA RecA is a bacter 27.6 44 0.00096 32.8 2.4 29 104-132 39-71 (325)
410 PRK06645 DNA polymerase III su 27.6 37 0.0008 35.5 1.9 36 94-133 24-60 (507)
411 COG1137 YhbG ABC-type (unclass 27.5 33 0.00071 31.7 1.3 14 121-134 35-48 (243)
412 TIGR03238 dnd_assoc_3 dnd syst 27.3 53 0.0011 34.2 2.9 19 117-135 33-51 (504)
413 PRK13850 type IV secretion sys 27.1 38 0.00083 36.7 2.0 20 114-133 137-156 (670)
414 TIGR03574 selen_PSTK L-seryl-t 27.1 27 0.00058 32.5 0.7 15 119-133 2-16 (249)
415 COG0464 SpoVK ATPases of the A 27.1 35 0.00075 35.3 1.6 50 84-133 239-293 (494)
416 PRK09401 reverse gyrase; Revie 27.1 40 0.00086 39.1 2.2 23 108-132 89-111 (1176)
417 TIGR02768 TraA_Ti Ti-type conj 27.1 33 0.00072 37.7 1.5 26 109-135 362-387 (744)
418 PTZ00301 uridine kinase; Provi 27.0 21 0.00046 32.7 0.0 13 120-132 7-19 (210)
419 COG3839 MalK ABC-type sugar tr 27.0 22 0.00047 35.2 0.1 15 119-133 32-46 (338)
420 PHA02530 pseT polynucleotide k 26.9 27 0.00059 33.2 0.7 15 118-132 4-18 (300)
421 PRK12727 flagellar biosynthesi 26.8 23 0.0005 37.3 0.3 18 117-134 351-368 (559)
422 PRK05896 DNA polymerase III su 26.8 47 0.001 35.5 2.5 24 110-133 31-55 (605)
423 PF01926 MMR_HSR1: 50S ribosom 26.6 31 0.00068 27.5 1.0 15 119-133 2-16 (116)
424 PRK11388 DNA-binding transcrip 26.6 39 0.00084 36.2 2.0 20 114-133 346-365 (638)
425 PRK05022 anaerobic nitric oxid 26.6 38 0.00083 35.3 1.8 42 86-133 186-227 (509)
426 PRK14951 DNA polymerase III su 26.5 37 0.00081 36.4 1.8 41 85-133 14-55 (618)
427 PRK13822 conjugal transfer cou 26.4 39 0.00085 36.4 1.9 18 116-133 224-241 (641)
428 PRK15483 type III restriction- 26.4 15 0.00033 41.2 -1.2 14 123-136 66-79 (986)
429 cd00071 GMPK Guanosine monopho 26.4 32 0.00069 29.0 1.0 13 119-131 2-14 (137)
430 TIGR01447 recD exodeoxyribonuc 26.4 23 0.0005 37.7 0.2 18 117-134 161-178 (586)
431 PF11559 ADIP: Afadin- and alp 26.3 2.7E+02 0.0059 23.7 6.9 58 4-61 63-121 (151)
432 TIGR00231 small_GTP small GTP- 26.3 32 0.00069 27.9 1.0 15 119-133 4-18 (161)
433 TIGR03878 thermo_KaiC_2 KaiC d 26.3 33 0.00071 32.4 1.2 15 116-130 36-50 (259)
434 PLN03187 meiotic recombination 26.3 47 0.001 33.0 2.3 28 104-131 111-141 (344)
435 TIGR01351 adk adenylate kinase 26.1 29 0.00064 31.3 0.8 13 119-131 2-14 (210)
436 PRK00300 gmk guanylate kinase; 26.0 34 0.00074 30.4 1.2 16 117-132 6-21 (205)
437 TIGR02688 conserved hypothetic 26.0 30 0.00066 35.4 0.9 21 113-135 208-228 (449)
438 TIGR02442 Cob-chelat-sub cobal 26.0 59 0.0013 35.0 3.2 42 84-133 1-42 (633)
439 cd03115 SRP The signal recogni 25.9 23 0.00051 30.7 0.1 15 119-133 3-17 (173)
440 PTZ00110 helicase; Provisional 25.9 45 0.00097 35.1 2.2 24 108-133 161-184 (545)
441 PRK13853 type IV secretion sys 25.9 21 0.00046 39.4 -0.2 19 116-134 426-444 (789)
442 PRK09354 recA recombinase A; P 25.8 50 0.0011 32.9 2.4 29 104-132 44-76 (349)
443 KOG0924|consensus 25.8 66 0.0014 34.9 3.3 20 114-133 369-388 (1042)
444 TIGR01587 cas3_core CRISPR-ass 25.7 32 0.0007 33.6 1.0 15 119-133 2-16 (358)
445 PRK14527 adenylate kinase; Pro 25.6 33 0.00072 30.4 1.0 16 117-132 7-22 (191)
446 PRK13897 type IV secretion sys 25.6 44 0.00096 35.8 2.1 17 117-133 159-175 (606)
447 TIGR00390 hslU ATP-dependent p 25.3 31 0.00067 35.3 0.8 17 117-133 48-64 (441)
448 PF05707 Zot: Zonular occluden 25.2 30 0.00064 31.0 0.6 15 119-133 3-17 (193)
449 COG1474 CDC6 Cdc6-related prot 25.1 67 0.0014 32.1 3.2 16 156-171 44-59 (366)
450 PRK14960 DNA polymerase III su 25.1 40 0.00086 36.5 1.6 41 85-133 13-54 (702)
451 cd01853 Toc34_like Toc34-like 25.1 26 0.00055 33.0 0.2 40 91-133 9-48 (249)
452 PF01745 IPT: Isopentenyl tran 25.1 34 0.00074 31.8 1.0 15 119-133 4-18 (233)
453 COG0563 Adk Adenylate kinase a 25.0 33 0.00071 30.6 0.9 12 119-130 3-14 (178)
454 KOG0330|consensus 24.8 39 0.00084 34.1 1.4 43 107-159 91-136 (476)
455 cd02028 UMPK_like Uridine mono 24.7 32 0.0007 30.4 0.8 15 119-133 2-16 (179)
456 TIGR02759 TraD_Ftype type IV c 24.4 25 0.00055 37.2 0.1 16 118-133 178-193 (566)
457 cd00227 CPT Chloramphenicol (C 24.3 36 0.00078 29.7 1.0 15 118-132 4-18 (175)
458 cd03279 ABC_sbcCD SbcCD and ot 24.2 28 0.0006 31.6 0.3 17 117-133 29-45 (213)
459 PRK13891 conjugal transfer pro 24.2 29 0.00062 38.8 0.4 18 116-133 488-505 (852)
460 PLN02200 adenylate kinase fami 24.2 34 0.00073 31.9 0.8 15 117-131 44-58 (234)
461 TIGR00235 udk uridine kinase. 24.2 33 0.00071 30.9 0.7 15 118-132 8-22 (207)
462 TIGR01243 CDC48 AAA family ATP 24.1 33 0.00071 37.6 0.8 50 84-133 450-504 (733)
463 COG1122 CbiO ABC-type cobalt t 24.1 36 0.00078 31.8 1.0 18 116-133 30-47 (235)
464 KOG4348|consensus 23.8 2E+02 0.0043 29.5 6.0 55 6-64 568-624 (627)
465 PRK13880 conjugal transfer cou 23.8 46 0.00099 35.9 1.8 18 116-133 175-192 (636)
466 KOG2228|consensus 23.8 1.2E+02 0.0025 30.4 4.4 43 90-136 27-69 (408)
467 PRK10865 protein disaggregatio 23.8 74 0.0016 35.6 3.5 32 104-135 187-218 (857)
468 KOG2655|consensus 23.6 48 0.001 33.1 1.8 22 111-132 16-37 (366)
469 COG1126 GlnQ ABC-type polar am 23.6 37 0.0008 31.7 0.9 14 120-133 32-45 (240)
470 COG1136 SalX ABC-type antimicr 23.6 38 0.00081 31.6 1.0 15 119-133 34-48 (226)
471 PRK00091 miaA tRNA delta(2)-is 23.6 37 0.0008 33.1 1.0 14 118-131 6-19 (307)
472 PRK11545 gntK gluconate kinase 23.6 26 0.00057 30.4 -0.0 12 122-133 1-12 (163)
473 PRK14956 DNA polymerase III su 23.5 59 0.0013 33.8 2.5 35 95-133 22-57 (484)
474 PF02463 SMC_N: RecF/RecN/SMC 23.4 41 0.00089 30.4 1.2 16 118-133 26-41 (220)
475 PRK11784 tRNA 2-selenouridine 23.3 39 0.00085 33.5 1.1 30 104-134 130-159 (345)
476 PRK14528 adenylate kinase; Pro 23.2 36 0.00079 30.2 0.8 14 119-132 4-17 (186)
477 PRK00279 adk adenylate kinase; 23.2 39 0.00085 30.6 1.0 13 119-131 3-15 (215)
478 TIGR02639 ClpA ATP-dependent C 23.2 70 0.0015 35.0 3.1 40 92-135 183-222 (731)
479 TIGR03783 Bac_Flav_CT_G Bacter 23.1 29 0.00063 38.6 0.2 18 116-133 438-455 (829)
480 TIGR02621 cas3_GSU0051 CRISPR- 23.1 49 0.0011 36.8 1.9 24 108-132 24-47 (844)
481 PRK06731 flhF flagellar biosyn 23.1 30 0.00066 33.0 0.3 18 117-134 76-93 (270)
482 PF03193 DUF258: Protein of un 23.0 58 0.0013 28.6 2.0 24 108-133 29-52 (161)
483 TIGR00174 miaA tRNA isopenteny 22.7 40 0.00087 32.5 1.0 14 119-132 2-15 (287)
484 TIGR03345 VI_ClpV1 type VI sec 22.6 81 0.0018 35.3 3.5 17 117-133 597-613 (852)
485 PTZ00035 Rad51 protein; Provis 22.6 65 0.0014 31.8 2.5 30 104-133 103-135 (337)
486 KOG1970|consensus 22.6 35 0.00075 36.0 0.6 16 118-133 112-127 (634)
487 PRK14963 DNA polymerase III su 22.6 46 0.001 34.8 1.5 16 118-133 38-53 (504)
488 PRK01184 hypothetical protein; 22.5 37 0.00081 29.7 0.7 14 118-131 3-16 (184)
489 COG3598 RepA RecA-family ATPas 22.5 39 0.00083 33.4 0.9 45 87-133 61-106 (402)
490 COG0324 MiaA tRNA delta(2)-iso 22.5 41 0.00089 32.8 1.0 16 118-133 5-20 (308)
491 PRK13876 conjugal transfer cou 22.5 54 0.0012 35.5 2.1 19 115-133 143-161 (663)
492 TIGR00176 mobB molybdopterin-g 22.3 30 0.00064 30.0 0.0 14 120-133 3-16 (155)
493 PRK08533 flagellar accessory p 22.2 44 0.00096 30.9 1.2 17 116-132 24-40 (230)
494 PRK07003 DNA polymerase III su 22.2 48 0.001 36.5 1.6 17 117-133 39-55 (830)
495 KOG0344|consensus 22.1 42 0.00091 35.4 1.1 25 107-133 166-190 (593)
496 PRK04296 thymidine kinase; Pro 22.1 25 0.00054 31.4 -0.5 18 118-135 4-21 (190)
497 cd04139 RalA_RalB RalA/RalB su 22.0 43 0.00092 27.9 1.0 15 119-133 3-17 (164)
498 KOG0925|consensus 21.9 47 0.001 34.5 1.4 20 114-133 60-79 (699)
499 TIGR03346 chaperone_ClpB ATP-d 21.9 71 0.0015 35.7 2.9 17 117-133 596-612 (852)
500 PRK02496 adk adenylate kinase; 21.8 44 0.00094 29.3 1.0 14 119-132 4-17 (184)
No 1
>KOG4280|consensus
Probab=100.00 E-value=8.4e-62 Score=491.15 Aligned_cols=236 Identities=34% Similarity=0.494 Sum_probs=215.0
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
+.++.|+||.||+++++|++||+.++.|+|++|++|||+||||||||||||||||+|.
T Consensus 49 ~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~---------------------- 106 (574)
T KOG4280|consen 49 GKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGP---------------------- 106 (574)
T ss_pred CCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCC----------------------
Confidence 4567799999999999999999999999999999999999999999999999999985
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc-CCCcccccCCC
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK-VNLSVHEDKNR 237 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~-~~L~i~ed~~~ 237 (378)
++..+|||||++.+||..|........|.|.|||+|||||.|+|||++.. ..|.+++|+..
T Consensus 107 ------------------~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~ 168 (574)
T KOG4280|consen 107 ------------------DPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKC 168 (574)
T ss_pred ------------------ChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCC
Confidence 13667999999999999999877677999999999999999999999876 68999999999
Q ss_pred CcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhh--hhhhccccchHHHHHHh
Q psy5719 238 VPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQES--MKEAENKKRSLEECVDA 308 (378)
Q Consensus 238 ~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~--l~e~~~in~Sll~lVDL 308 (378)
|+|| .+++++.+.|+++++.++..| |+++.|.|| |||+||++++.... ......+..|+||||||
T Consensus 169 Gv~V------~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvDL 242 (574)
T KOG4280|consen 169 GVYV------ENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVDL 242 (574)
T ss_pred ceEe------cCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeeec
Confidence 9999 799999999999999999988 999999999 99999999977622 33444588899999999
Q ss_pred hcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Q psy5719 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIAD 368 (378)
Q Consensus 309 AGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~~ 368 (378)
||||| ..++++.| +|+|||.+||+|||+||+||++|++.... |++|||+-+.
T Consensus 243 agsEr-----~~~tga~G--~rlkEa~~IN~SLs~LG~vI~aLvd~~~~-HIPYRdSkLT 294 (574)
T KOG4280|consen 243 AGSER-----QSKTGAEG--ERLKEATNINLSLSALGNVISALVDGSKT-HIPYRDSKLT 294 (574)
T ss_pred cchhh-----hcccCccc--hhhhhhcccchhHHHHHHHHHHHhccccC-CCCcchhHHH
Confidence 99999 77777777 99999999999999999999999999876 9999999654
No 2
>KOG0245|consensus
Probab=100.00 E-value=9e-58 Score=472.75 Aligned_cols=235 Identities=27% Similarity=0.457 Sum_probs=210.0
Q ss_pred CeeEecccccCCC-------CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcc
Q psy5719 81 GKFYLFDKVFKPN-------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGY 153 (378)
Q Consensus 81 ~~~F~FD~Vf~~~-------~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~ 153 (378)
...|+||+.|+.. ++|..||+.+..++++.+|+|||+||||||||||||||||+|.
T Consensus 46 ~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~----------------- 108 (1221)
T KOG0245|consen 46 APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGF----------------- 108 (1221)
T ss_pred CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeecc-----------------
Confidence 4459999999864 5799999999999999999999999999999999999999995
Q ss_pred cCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccc-c-ccCCCc
Q psy5719 154 NGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLD-V-SKVNLS 230 (378)
Q Consensus 154 ~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~-~-~~~~L~ 230 (378)
.+++..|||||.+++||.++... .....|.|.|||+|||||.|+|||+ | .+..|+
T Consensus 109 ----------------------~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~kg~LR 166 (1221)
T KOG0245|consen 109 ----------------------QEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSKGGLR 166 (1221)
T ss_pred ----------------------CCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCCCCce
Confidence 24567799999999999999763 4578999999999999999999999 4 467899
Q ss_pred ccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhc---cccc
Q psy5719 231 VHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAE---NKKR 300 (378)
Q Consensus 231 i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~---~in~ 300 (378)
+||+|..|.|| .+++.+.|.|+.++..|++.| |++++|+|| |||+||+|...+.+.+... ....
T Consensus 167 VREHP~lGPYV------edLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~ 240 (1221)
T KOG0245|consen 167 VREHPILGPYV------EDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKV 240 (1221)
T ss_pred eeccCccChhH------hHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceee
Confidence 99999999999 899999999999999999988 999999999 9999999998877766554 3678
Q ss_pred hHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh----hh-hhhhhhHHH
Q psy5719 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ----KQ-VAELRDEIA 367 (378)
Q Consensus 301 Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~----~~-~~~~~d~~~ 367 (378)
|+++||||||||| ...+|+.| +||||+.+|||||+|||.||+||||... +. .++|||+++
T Consensus 241 SKIsLVDLAGSER-----asstGa~G--~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVL 305 (1221)
T KOG0245|consen 241 SKISLVDLAGSER-----ASSTGANG--DRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVL 305 (1221)
T ss_pred eeeeEEeccCccc-----ccccCCCc--cchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHH
Confidence 9999999999999 55556666 9999999999999999999999999985 22 578999985
No 3
>KOG0239|consensus
Probab=100.00 E-value=3.2e-56 Score=464.30 Aligned_cols=277 Identities=29% Similarity=0.397 Sum_probs=235.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHhhhcceecccccc----CCCC-------------------Cc---CCCCeeEe
Q psy5719 32 YEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR----RGPA-------------------PQ---IGKGKFYL 85 (378)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-------------------~~---~~~~~~F~ 85 (378)
+++++..|.+.+ .|...|++++|++.++||+|||.+-++ .+.. +. ....+.|.
T Consensus 285 L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 363 (670)
T KOG0239|consen 285 LESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFK 363 (670)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccce
Confidence 445666688888 888999999999999999999953222 2111 00 01123499
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCC
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSS 165 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgs 165 (378)
||+||+|.++|++||.. +.|+|.++|+|||+||||||||||||||||.|+
T Consensus 364 fdkVf~p~~sQ~~VF~e-~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~----------------------------- 413 (670)
T KOG0239|consen 364 FDKVFGPLASQDDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP----------------------------- 413 (670)
T ss_pred eeeecCCcccHHHHHHH-HHHHHHHHhcCcceeEEEecccCCCccccccCC-----------------------------
Confidence 99999999999999999 599999999999999999999999999999883
Q ss_pred CCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc--cCCCcccccCCCCcEEee
Q psy5719 166 GKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKNRVPFVKV 243 (378)
Q Consensus 166 gKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~--~~~L~i~ed~~~~~~v~~ 243 (378)
.+..+||+||++..||..+......|.|.+.+||+|||||.|+|||.+. ...+.|+.++++.+.|
T Consensus 414 -----------~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V-- 480 (670)
T KOG0239|consen 414 -----------TPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMV-- 480 (670)
T ss_pred -----------CcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccccccceeEEEcCCCceec--
Confidence 1345699999999999999988889999999999999999999999986 4789999999999888
Q ss_pred eceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhh
Q psy5719 244 KNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316 (378)
Q Consensus 244 ~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~ 316 (378)
+++|.+.|.+.++|..+++.| |+++.|.+| |||+||++++.+... ..+..-.+.++|||||||||
T Consensus 481 ----~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~-~t~~~~~g~l~LVDLAGSER--- 552 (670)
T KOG0239|consen 481 ----PLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINE-LTGIRVTGVLNLVDLAGSER--- 552 (670)
T ss_pred ----ccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEecccc-CcccccccceeEeecccCcc---
Confidence 899999999999999999988 999999999 999999999776633 22335567899999999999
Q ss_pred hhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q psy5719 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEI 366 (378)
Q Consensus 317 ~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~ 366 (378)
....+++| +|++|+++||+|||+||.||.||+- .+.|.++|++-
T Consensus 553 --~~~s~~tG--~RlkE~Q~INkSLS~LgdVi~AL~~--k~~HiPyRNSK 596 (670)
T KOG0239|consen 553 --VSKSGVTG--ERLKEAQNINKSLSALGDVISALAS--KRSHIPYRNSK 596 (670)
T ss_pred --cCcCCCch--hhhHHHHHhchhhhhhHHHHHHHhh--cCCCCcccccc
Confidence 44455555 9999999999999999999999987 67888998864
No 4
>KOG0240|consensus
Probab=100.00 E-value=1e-56 Score=444.14 Aligned_cols=232 Identities=50% Similarity=0.687 Sum_probs=211.7
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccccc
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYG 161 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ayg 161 (378)
+.|.||+||.|+++|++||+.++.|+|++||.|||+||||||||||||||||.|..+|
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d---------------------- 106 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHD---------------------- 106 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCC----------------------
Confidence 8899999999999999999999999999999999999999999999999999886443
Q ss_pred CCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEE
Q psy5719 162 QTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFV 241 (378)
Q Consensus 162 qtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v 241 (378)
+...||+||++++||..|........|.|+|||+|||+|.++|||++.+.+|.+++|.+++++|
T Consensus 107 ----------------~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~v 170 (607)
T KOG0240|consen 107 ----------------PEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYV 170 (607)
T ss_pred ----------------hhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCcee
Confidence 3567999999999999999988889999999999999999999999999999999999999999
Q ss_pred eeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccch
Q psy5719 242 KVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECA 314 (378)
Q Consensus 242 ~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra 314 (378)
.|+|+..|.|.++++..++.| |.++.|+|| |||+||+++..+...+ ......++|-||||||||+
T Consensus 171 ------kG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e-~~~~~~gkLyLVDLaGSEk- 242 (607)
T KOG0240|consen 171 ------KGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVE-DKRKLSGKLYLVDLAGSEK- 242 (607)
T ss_pred ------cCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEecccc-chhhccccEEEEEcccccc-
Confidence 799999999999999999988 999999999 9999999997766553 3336678899999999888
Q ss_pred hhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q psy5719 315 KLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEI 366 (378)
Q Consensus 315 ~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~ 366 (378)
-.++|+.| ..+.||++||+||++||+||+|||+-- ..+.||||+=
T Consensus 243 ----vsKtga~g--~vleEaK~INkSLsaLgnvI~aLa~g~-~shipYRDSK 287 (607)
T KOG0240|consen 243 ----VSKTGAEG--AVLEEAKNINKSLSALGNVINALAEGP-KSHIPYRDSK 287 (607)
T ss_pred ----cCCCCccc--hhHHHHhhhhhhHHHHHHHHHHHhcCC-CCCCcchhhH
Confidence 55556556 999999999999999999999999986 7788999863
No 5
>KOG0242|consensus
Probab=100.00 E-value=2.6e-56 Score=466.41 Aligned_cols=228 Identities=34% Similarity=0.474 Sum_probs=208.3
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
+..|.||+||+++++|++||+.+++|+|.+++.|+|+||||||||||||||||.|...+
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~--------------------- 110 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDD--------------------- 110 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCC---------------------
Confidence 48999999999999999999999999999999999999999999999999999987433
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcE
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPF 240 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~ 240 (378)
+|++|.++.+||+.+.... +..|.|.|||+|||||.|+|||+++..+|.++||+.++++
T Consensus 111 --------------------PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~ 169 (675)
T KOG0242|consen 111 --------------------PGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIV 169 (675)
T ss_pred --------------------CCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEE
Confidence 4999999999999998855 8899999999999999999999999999999999999999
Q ss_pred EeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccc
Q psy5719 241 VKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313 (378)
Q Consensus 241 v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEr 313 (378)
| .++++..+.|.++++.++..| |+++.|++| |||+||+|.......... . ..|+++|||||||||
T Consensus 170 V------~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~-~-~~s~L~lIDLAGSER 241 (675)
T KOG0242|consen 170 V------PGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREAS-S-RVSKLNLIDLAGSER 241 (675)
T ss_pred e------cCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEecccccc-c-hhheehhhhhhhhhh
Confidence 8 899999999999999999988 999999999 999999998553332222 2 567899999999999
Q ss_pred hhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy5719 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365 (378)
Q Consensus 314 a~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~ 365 (378)
..++++.| .|++|+++||+||++||+||++|++.+..++.+|||+
T Consensus 242 -----as~T~~~G--~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDS 286 (675)
T KOG0242|consen 242 -----ASRTGNEG--VRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDS 286 (675)
T ss_pred -----hhhhhccc--eeccccchhhHHHHHHHHHHHHHccccccCCCCcccc
Confidence 66677666 9999999999999999999999999988889999997
No 6
>KOG0243|consensus
Probab=100.00 E-value=2.5e-56 Score=469.27 Aligned_cols=235 Identities=32% Similarity=0.456 Sum_probs=201.5
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+|++.|.+||+.+|.|+|..|+.|||||||||||||+||||||.|...+..
T Consensus 94 ~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~------------------- 154 (1041)
T KOG0243|consen 94 DKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKN------------------- 154 (1041)
T ss_pred cceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCccccc-------------------
Confidence 6789999999999999999999999999999999999999999999999999999644321
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc---CCCcccccC--
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK---VNLSVHEDK-- 235 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~---~~L~i~ed~-- 235 (378)
...++..|||||++.+||+.+.. .+.+|+|.|||+|+|||.++|||++.. ..+.+.+|+
T Consensus 155 --------------g~l~~~aGIIPRal~~IFd~Le~--~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~ 218 (1041)
T KOG0243|consen 155 --------------GELPSEAGIIPRALRQIFDTLEA--QGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTI 218 (1041)
T ss_pred --------------CCCCccCCcchHHHHHHHHHHHh--cCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcc
Confidence 13456779999999999999976 348999999999999999999998752 456666655
Q ss_pred ---CCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhh-hhhhhhcc-ccchHH
Q psy5719 236 ---NRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQ-ESMKEAEN-KKRSLE 303 (378)
Q Consensus 236 ---~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~-~~l~e~~~-in~Sll 303 (378)
.++++| .|+-+..|.++.++..+|+.| |++++|.|| |||+||+|++-. ..-.+++. +..++|
T Consensus 219 ~~~kggV~v------kGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geelvK~GKL 292 (1041)
T KOG0243|consen 219 VDGKGGVIV------KGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKL 292 (1041)
T ss_pred cCCcCcEEE------ecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhhHhhccc
Confidence 566777 799999999999999999999 999999999 999999877532 11222223 777999
Q ss_pred HHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy5719 304 ECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365 (378)
Q Consensus 304 ~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~ 365 (378)
|||||||||. -.|.||.+ .|.+||.+||+||+|||+||+||++.. +|.||||+
T Consensus 293 NLVDLAGSEN-----I~RSGA~~--~RArEAG~INqSLLTLGRVInALVe~s--~HIPYRES 345 (1041)
T KOG0243|consen 293 NLVDLAGSEN-----ISRSGARN--GRAREAGEINQSLLTLGRVINALVEHS--GHIPYRES 345 (1041)
T ss_pred ceeecccccc-----cccccccc--chhHHhhhhhHHHHHHHHHHHHHHccC--CCCCchHH
Confidence 9999999998 67777777 599999999999999999999999976 67888775
No 7
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=4.3e-55 Score=428.81 Aligned_cols=241 Identities=31% Similarity=0.426 Sum_probs=205.5
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|.||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+..
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~------------------ 101 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDE------------------ 101 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCcccc------------------
Confidence 58999999999999999999999999999999999999999999999999999996432200
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc----cccceeEEEEeeeeeeccccccccccccCCCcccccCC
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM----DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKN 236 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~----~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~ 236 (378)
.....+||+||++++||+.+... .....|.|++||+|||||.++|||++....+.+++|+.
T Consensus 102 ---------------~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~ 166 (337)
T cd01373 102 ---------------SPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIK 166 (337)
T ss_pred ---------------ccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCC
Confidence 11245699999999999988643 24578999999999999999999998888999999999
Q ss_pred CCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhh-ccccchHHHHHHh
Q psy5719 237 RVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEA-ENKKRSLEECVDA 308 (378)
Q Consensus 237 ~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~-~~in~Sll~lVDL 308 (378)
+++++ .+++++.+.|.++++.++..| |+++.|.+| |||+||++.......... ..+..|+++||||
T Consensus 167 ~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 240 (337)
T cd01373 167 KGVYV------ENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDL 240 (337)
T ss_pred CCEEe------CCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEEC
Confidence 99988 799999999999999999987 899999998 999999998653222111 2355689999999
Q ss_pred hcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHh--hhhhhhhhhHHH
Q psy5719 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH--QKQVAELRDEIA 367 (378)
Q Consensus 309 AGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~--~~~~~~~~d~~~ 367 (378)
||||| ....++.| ++++|+++||+||++||+||.+|++.. ..++.++||+.+
T Consensus 241 AGSEr-----~~~~~~~g--~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkL 294 (337)
T cd01373 241 AGSER-----QKDDGAEG--VRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKL 294 (337)
T ss_pred CCCCc-----ccccCCcc--HhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHH
Confidence 99999 44444445 999999999999999999999999754 468899999853
No 8
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=5.2e-55 Score=463.62 Aligned_cols=266 Identities=27% Similarity=0.379 Sum_probs=219.9
Q ss_pred HhhhcceeccccccCCCC----------CcCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCC
Q psy5719 58 DRIKEAVRQKNLARRGPA----------PQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSS 127 (378)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~----------~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgS 127 (378)
..+++++|++|+...... .....++.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||
T Consensus 98 s~VkV~VRVRPl~~~E~g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGS 177 (1320)
T PLN03188 98 SGVKVIVRMKPLNKGEEGEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGS 177 (1320)
T ss_pred CCeEEEEEcCCCCCccCCCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCC
Confidence 368999999998665321 1123467899999999999999999999999999999999999999999999
Q ss_pred CcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-----cccc
Q psy5719 128 GKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-----DENL 202 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-----~~~~ 202 (378)
||||||+|..... ++ ........||+||++.+||..+... ....
T Consensus 178 GKTYTM~G~~~~~-----~d--------------------------e~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~ 226 (1320)
T PLN03188 178 GKTYTMWGPANGL-----LE--------------------------EHLSGDQQGLTPRVFERLFARINEEQIKHADRQL 226 (1320)
T ss_pred CCCEeeCCCCCcc-----cc--------------------------cccccccCCchHHHHHHHHHHHHhhhhhcccccc
Confidence 9999999963211 00 0012345699999999999988642 2457
Q ss_pred eeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc--
Q psy5719 203 EFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL-- 277 (378)
Q Consensus 203 ~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln-- 277 (378)
.|.|+|||+|||||.|+|||++....|.|++|+.++++| .+++++.|.|.+++..++..| |+++.|.||
T Consensus 227 ~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~V------eGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~ 300 (1320)
T PLN03188 227 KYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYV------ENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAE 300 (1320)
T ss_pred ceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEe------CCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCc
Confidence 899999999999999999999988899999999999998 799999999999999999988 999999998
Q ss_pred --chhhHHHHhhhhhhh--hh-hccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHH
Q psy5719 278 --LSHHEARMKSLQESM--KE-AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLR 352 (378)
Q Consensus 278 --rSH~if~i~~~~~~l--~e-~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~ 352 (378)
|||+||++.+..... .. ......|+++||||||||| ..++++.| ++++|+++||+||++||+||++|+
T Consensus 301 SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER-----~kkTga~G--~RLkEA~~INKSLsaLGnVI~ALa 373 (1320)
T PLN03188 301 SSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSER-----QKLTGAAG--DRLKEAGNINRSLSQLGNLINILA 373 (1320)
T ss_pred cCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchh-----ccccCccc--HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999888543211 11 1224568899999999999 44455555 999999999999999999999999
Q ss_pred HHhh---hhhhhhhhHHH
Q psy5719 353 DVHQ---KQVAELRDEIA 367 (378)
Q Consensus 353 ~~~~---~~~~~~~d~~~ 367 (378)
+.++ ..+.++||+-+
T Consensus 374 e~Sq~gk~~HIPYRDSKL 391 (1320)
T PLN03188 374 EISQTGKQRHIPYRDSRL 391 (1320)
T ss_pred HhhccCCCCcCCCCcchH
Confidence 8754 35889999864
No 9
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=8.6e-55 Score=426.88 Aligned_cols=235 Identities=31% Similarity=0.428 Sum_probs=207.6
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
..++.|.||+||+++++|++||+.+++|+|+++++|+|+||||||||||||||||+|..
T Consensus 51 ~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~--------------------- 109 (338)
T cd01370 51 NKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD--------------------- 109 (338)
T ss_pred CCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC---------------------
Confidence 35689999999999999999999999999999999999999999999999999999862
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCC
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRV 238 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~ 238 (378)
..+||+||++++||+.+......+.|.|++||+|||||.++|||++...+|.+++|+.++
T Consensus 110 --------------------~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~ 169 (338)
T cd01370 110 --------------------SDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQG 169 (338)
T ss_pred --------------------CCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCC
Confidence 334999999999999998877789999999999999999999999888899999999999
Q ss_pred cEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh--hccccchHHHHHHhh
Q psy5719 239 PFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE--AENKKRSLEECVDAL 309 (378)
Q Consensus 239 ~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e--~~~in~Sll~lVDLA 309 (378)
+++ .+++++.+.|.++++.++..| |+++.|.+| |||+||++...+..... ......|+++|||||
T Consensus 170 ~~v------~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLA 243 (338)
T cd01370 170 IVV------AGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLA 243 (338)
T ss_pred EEe------CCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECC
Confidence 988 799999999999999999987 899999988 99999999876544332 233667889999999
Q ss_pred cccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHH
Q psy5719 310 REECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 310 GSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
||||++. .+..| ++++|+++||+||++||+||.+|+.... ..+.++||+-+
T Consensus 244 GsEr~~~-----~~~~g--~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkL 295 (338)
T cd01370 244 GSERASA-----TNNRG--QRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKL 295 (338)
T ss_pred CCccccc-----cCCCC--ccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHH
Confidence 9999443 33344 9999999999999999999999998763 47888888763
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.3e-53 Score=419.59 Aligned_cols=228 Identities=32% Similarity=0.455 Sum_probs=199.7
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
.++.|.||+||+++++|++||+.++.|+|+++++|+|+||||||||||||||||+|..
T Consensus 53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~---------------------- 110 (345)
T cd01368 53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP---------------------- 110 (345)
T ss_pred CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCC----------------------
Confidence 4678999999999999999999999999999999999999999999999999999852
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc------CCCcccc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK------VNLSVHE 233 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~------~~L~i~e 233 (378)
..+||+||++++||+.+.. |.|++||+|||||.|+|||++.. .++.+++
T Consensus 111 -------------------~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~e 165 (345)
T cd01368 111 -------------------GDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLRE 165 (345)
T ss_pred -------------------CCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEE
Confidence 3459999999999998854 99999999999999999998754 3699999
Q ss_pred cCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh-------hcccc
Q psy5719 234 DKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE-------AENKK 299 (378)
Q Consensus 234 d~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e-------~~~in 299 (378)
|+.+++++ .+++++.+.|.+++..++..| |.++.|.+| |||+||++......... ...+.
T Consensus 166 d~~~~~~i------~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~ 239 (345)
T cd01368 166 DHNGNMYV------AGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQDKDQIT 239 (345)
T ss_pred CCCCCEEe------cCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccCCCceE
Confidence 99999988 799999999999999999988 999999988 99999998866433322 23356
Q ss_pred chHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHh----hhhhhhhhhHHH
Q psy5719 300 RSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH----QKQVAELRDEIA 367 (378)
Q Consensus 300 ~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~----~~~~~~~~d~~~ 367 (378)
.|+++||||||||| ..+++..| ++++|+.+||+||++||+||++|++.. ...+.++||+-+
T Consensus 240 ~s~l~~VDLAGsEr-----~~~~~~~g--~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkL 304 (345)
T cd01368 240 VSQLSLVDLAGSER-----TSRTQNTG--ERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKL 304 (345)
T ss_pred EEEEEEEecccccc-----cccccccc--hhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHH
Confidence 68899999999999 44444445 999999999999999999999999865 467888888764
No 11
>KOG0247|consensus
Probab=100.00 E-value=3.2e-53 Score=428.63 Aligned_cols=271 Identities=28% Similarity=0.383 Sum_probs=218.8
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|.|.+||+|+++|.+||+.++.|+|.+++.|.|..+|+||.|||||||||.|+ +..+||+||+|+.+|.+|..+
T Consensus 80 e~~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~---~~~~GIlPR~Ld~iF~siq~~ 156 (809)
T KOG0247|consen 80 EKKFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGT---PDRPGILPRALDVIFNSIQGR 156 (809)
T ss_pred eeEeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecC---CCCCCchHHHHHHHHHHhhce
Confidence 57899999999999999999999999999999999999999999999999999997 555699999999999998764
Q ss_pred cCCC-C--------------------CCcccccccCCCCC--CCCchhhhHHHHHhhhh---cccccceeEEEEeeeeee
Q psy5719 161 GQTS-S--------------------GKTHTMEGVMGDPN--KQGIIPRIVNDIFNHIY---QMDENLEFIIKVSYFEIY 214 (378)
Q Consensus 161 gqtg-s--------------------gKt~tm~g~~~~~~--~~Giipr~~~~lf~~l~---~~~~~~~~~V~vS~~EIY 214 (378)
-.+. . -|-..|.....++. +.-..|...+.+-..-. ..+.+..|.|||||+|||
T Consensus 157 ~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIY 236 (809)
T KOG0247|consen 157 QAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIY 236 (809)
T ss_pred eccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHH
Confidence 3221 0 02222221111111 12334444433221111 134788999999999999
Q ss_pred cccccccccccc-----CC-CcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhh
Q psy5719 215 MDKIRDLLDVSK-----VN-LSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHH 281 (378)
Q Consensus 215 nE~i~DLL~~~~-----~~-L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~ 281 (378)
||.|||||.+.. .. ..+++|.++..|| .|++++.|.|++++++++..| |+++.|.+| |||+
T Consensus 237 N~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~V------kgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHs 310 (809)
T KOG0247|consen 237 NNYIYDLLEDASFQGKLQKLKLLREDTNGNMYV------KGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHS 310 (809)
T ss_pred HHHHHHhhccccccchhhhhhhhhhccCCCeee------ccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccce
Confidence 999999998652 23 6788999999999 799999999999999999999 999999998 9999
Q ss_pred HHHHhhhhhhhh-hhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh--
Q psy5719 282 EARMKSLQESMK-EAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQ-- 358 (378)
Q Consensus 282 if~i~~~~~~l~-e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~-- 358 (378)
||+|.+++.-.. ....|..|-+.||||||||| ..+++.+| +||+||+|||.||++||+||++|+.++..+
T Consensus 311 VFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER-----t~rtq~sG--~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~ 383 (809)
T KOG0247|consen 311 VFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER-----TNRTQNSG--ERLREAGNINTSLMTLRRCIDVLRENQKSKSQ 383 (809)
T ss_pred eEEEEeeecccccccCceeEEeeeeeecccchh-----cccccchh--HHHHhhccccHHHHHHHHHHHHHHHHhhhhcc
Confidence 999998876665 44557788899999999999 77777777 999999999999999999999999998654
Q ss_pred -hhhhhhHHH
Q psy5719 359 -VAELRDEIA 367 (378)
Q Consensus 359 -~~~~~d~~~ 367 (378)
..++||+-.
T Consensus 384 ~~VPyRdSKL 393 (809)
T KOG0247|consen 384 KIVPYRDSKL 393 (809)
T ss_pred ccCcchHHHH
Confidence 567787653
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=1.3e-51 Score=407.21 Aligned_cols=235 Identities=30% Similarity=0.463 Sum_probs=204.8
Q ss_pred CCCeeEecccccCCC-------CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhh
Q psy5719 79 GKGKFYLFDKVFKPN-------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLA 151 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~-------~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~ 151 (378)
...+.|.||+||+++ ++|++||+.++.|+|+++++|+|+||||||||||||||||+|..
T Consensus 45 ~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~-------------- 110 (356)
T cd01365 45 KKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK-------------- 110 (356)
T ss_pred cCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCC--------------
Confidence 356899999999999 99999999999999999999999999999999999999999862
Q ss_pred cccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccc-cceeEEEEeeeeeecccccccccccc---C
Q psy5719 152 GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NLEFIIKVSYFEIYMDKIRDLLDVSK---V 227 (378)
Q Consensus 152 g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~-~~~~~V~vS~~EIYnE~i~DLL~~~~---~ 227 (378)
...||+||++++||+.+..... ...|.|++||+|||||.++|||++.. .
T Consensus 111 ---------------------------~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~ 163 (356)
T cd01365 111 ---------------------------EEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKG 163 (356)
T ss_pred ---------------------------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCc
Confidence 2349999999999999876543 67899999999999999999999774 6
Q ss_pred CCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh---hcc
Q psy5719 228 NLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE---AEN 297 (378)
Q Consensus 228 ~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e---~~~ 297 (378)
.+.+++|+.+++++ .+++++.+.|+.++..++..+ |+++.|.+| |||+||++...+..... ...
T Consensus 164 ~l~i~~~~~~g~~v------~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~ 237 (356)
T cd01365 164 NLKVREHPVLGPYV------EDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTT 237 (356)
T ss_pred CceEEECCCCCEEe------CCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCc
Confidence 89999999999888 799999999999999999988 888999887 99999999866544432 333
Q ss_pred ccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHh------hhhhhhhhhHHH
Q psy5719 298 KKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH------QKQVAELRDEIA 367 (378)
Q Consensus 298 in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~------~~~~~~~~d~~~ 367 (378)
...|+++||||||||| ....+..+ ++++|+.+||+||++||+||.+|+... .+.+.++||+.+
T Consensus 238 ~~~s~l~~VDLAGsEr-----~~~~~~~~--~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkL 306 (356)
T cd01365 238 EKVSKISLVDLAGSER-----ASSTGAEG--DRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVL 306 (356)
T ss_pred eEEEEEEeeecccccc-----cccccccc--hhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHH
Confidence 6678999999999999 34444444 999999999999999999999999976 458888888764
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.7e-51 Score=401.22 Aligned_cols=225 Identities=28% Similarity=0.347 Sum_probs=198.3
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|..
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~----------------------- 106 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDE----------------------- 106 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcC-----------------------
Confidence 578999999999999999999999999999999999999999999999999999863
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcE
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPF 240 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~ 240 (378)
..+||+||++++||+.+.... ..|.|++||+|||||.++|||++ ...+.+++|+.++++
T Consensus 107 ------------------~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~~~~~ 165 (322)
T cd01367 107 ------------------NQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGKGNVQ 165 (322)
T ss_pred ------------------CcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC-ccceeEEEcCCCCEE
Confidence 344999999999999987643 78999999999999999999997 668999999999998
Q ss_pred EeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccc
Q psy5719 241 VKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313 (378)
Q Consensus 241 v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEr 313 (378)
+ .+++++.+.|.++++.++..| |+++.|.+| |||+||++....... ....|+++|||||||||
T Consensus 166 v------~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~----~~~~s~l~~vDLAGsE~ 235 (322)
T cd01367 166 I------VGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL----NKLLGKLSFIDLAGSER 235 (322)
T ss_pred e------CCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC----CeeEEEEEEeecCCccc
Confidence 8 799999999999999999987 999999988 999999998553322 35568899999999999
Q ss_pred hhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 314 a~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
.+. .+. ..+++++|+.+||+||++|++||.+|+... .+.++||+.+
T Consensus 236 ~~~-----~~~-~~~~~~~e~~~IN~SL~~L~~vi~al~~~~--~~iPyRdSkL 281 (322)
T cd01367 236 GAD-----TSE-HDRQTRKEGAEINKSLLALKECIRALASNK--AHVPFRGSKL 281 (322)
T ss_pred ccc-----ccc-cchhhHHhHhHHhHHHHHHHHHHHHHhcCC--CcCCCccCHH
Confidence 433 221 135899999999999999999999999764 7899999864
No 14
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=6e-51 Score=399.16 Aligned_cols=235 Identities=29% Similarity=0.397 Sum_probs=202.1
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|.||+||++ ++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+..
T Consensus 45 ~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~-------------------- 103 (334)
T cd01375 45 QEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTE-------------------- 103 (334)
T ss_pred cCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCC--------------------
Confidence 34568999999999 999999999999999999999999999999999999999999622
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc------CCCccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK------VNLSVH 232 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~------~~L~i~ 232 (378)
+....||+||++.+||+.+... .+..|.|++||+|||||.++|||++.. ..+.++
T Consensus 104 ------------------~~~~~Glipr~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~ 164 (334)
T cd01375 104 ------------------SYKDRGLIPRALEQVFREVAMR-ATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTIL 164 (334)
T ss_pred ------------------cccCCchHHHHHHHHHHHHHhc-cCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEE
Confidence 1235699999999999998763 567899999999999999999999874 578999
Q ss_pred ccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh-hhccccchHHH
Q psy5719 233 EDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK-EAENKKRSLEE 304 (378)
Q Consensus 233 ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~-e~~~in~Sll~ 304 (378)
+|+.+++++ .+++++.+.|.++++.++..| |+++.|.+| |||+||++...+.... ....+..|+++
T Consensus 165 e~~~~~~~v------~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~ 238 (334)
T cd01375 165 EDSEQNIHV------KGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLSKLN 238 (334)
T ss_pred EcCCCCEEe------CCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEEEEE
Confidence 999999988 799999999999999999877 888889887 9999999986644222 23336678899
Q ss_pred HHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 305 CVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 305 lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||||||| ....+.. +.+++|++.||+||++|++||.+|+... +.+.++||+-+
T Consensus 239 ~VDLAGsEr-----~~~~~~~--~~~~~e~~~iN~SL~~L~~vi~~l~~~~-~~~ipyRdSkL 293 (334)
T cd01375 239 LVDLAGSER-----VSKTGVS--GQVLKEAKYINKSLSFLEQVINALSEKA-RTHVPYRNSKL 293 (334)
T ss_pred EEECCCCCc-----cccccCc--hhhhhhhhhhhhhHHHHHHHHHHHHhCC-CCCCCCcccHH
Confidence 999999998 3434433 4899999999999999999999999765 57889998864
No 15
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=8.2e-51 Score=399.55 Aligned_cols=260 Identities=29% Similarity=0.436 Sum_probs=218.0
Q ss_pred hhcceeccccccCC---------------CCCcCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeecc
Q psy5719 60 IKEAVRQKNLARRG---------------PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQ 124 (378)
Q Consensus 60 ~~~~~~~~~~~~~~---------------~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~ 124 (378)
|++++|++|+...+ |....+..+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||||||
T Consensus 3 i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~ 82 (341)
T cd01372 3 VRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQ 82 (341)
T ss_pred eEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecC
Confidence 45666666654322 233345578999999999999999999999999999999999999999999
Q ss_pred CCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccccccee
Q psy5719 125 TSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEF 204 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~ 204 (378)
|||||||||+|..... ......||+||++++||+.+........|
T Consensus 83 tgSGKT~Tm~G~~~~~-----------------------------------~~~~~~Giipr~~~~LF~~~~~~~~~~~~ 127 (341)
T cd01372 83 TGSGKTYTMGTAFTAS-----------------------------------EDEEEVGIIPRAIQHIFKKIDEKKDEPDF 127 (341)
T ss_pred CCCCCcEEecCCCccc-----------------------------------cccccCChHHHHHHHHHHHHHhccccceE
Confidence 9999999999863211 12356699999999999999887667899
Q ss_pred EEEEeeeeeeccccccccccc---cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc-
Q psy5719 205 IIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL- 277 (378)
Q Consensus 205 ~V~vS~~EIYnE~i~DLL~~~---~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln- 277 (378)
.|.+||+|||||.++|||.+. ...+.+++|+.+++++ .+++++.+.|.++++.++..+ |..+.|.+|
T Consensus 128 ~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i------~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~ 201 (341)
T cd01372 128 QLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIII------VGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNS 201 (341)
T ss_pred EEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEec------CCCEEEEECCHHHHHHHHHHHHHhcccccccCCC
Confidence 999999999999999999986 5789999999999998 799999999999999999977 888888887
Q ss_pred ---chhhHHHHhhhhhhhh---------hhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHH
Q psy5719 278 ---LSHHEARMKSLQESMK---------EAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALE 345 (378)
Q Consensus 278 ---rSH~if~i~~~~~~l~---------e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg 345 (378)
|||+||++...+.... .......|.++|||||||||. .+.+.. +++++|+..||+||++|+
T Consensus 202 ~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~-----~~~~~~--~~~~~e~~~in~sl~aL~ 274 (341)
T cd01372 202 QSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERL-----KKTGAT--GDRLKEGISINSGLLALG 274 (341)
T ss_pred ccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCccc-----ccccCc--hhHhHHHHHHhHHHHHHH
Confidence 9999999987755543 233466788999999999994 333333 499999999999999999
Q ss_pred HHHHHHHHHhh-hhhhhhhhHHH
Q psy5719 346 QQMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 346 ~vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
+||.+|+.... ..+.++||+.+
T Consensus 275 ~vi~al~~~~~~~~~ipyR~S~L 297 (341)
T cd01372 275 NVISALGDESKKGSHVPYRDSKL 297 (341)
T ss_pred HHHHHHHhcCCCCCCCCCcccHH
Confidence 99999997763 46888988764
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=1.3e-50 Score=396.74 Aligned_cols=236 Identities=36% Similarity=0.525 Sum_probs=202.7
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|...
T Consensus 45 ~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~-------------------- 104 (333)
T cd01371 45 EPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVRE-------------------- 104 (333)
T ss_pred CCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCC--------------------
Confidence 456789999999999999999999999999999999999999999999999999999632
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc-CCCcccccCCC
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK-VNLSVHEDKNR 237 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~-~~L~i~ed~~~ 237 (378)
++..+||+||++++||+.+... ....|.|.+||+|||||.++|||++.. ..+.+++++.+
T Consensus 105 ------------------~~~~~Glipr~~~~Lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~ 165 (333)
T cd01371 105 ------------------PPELRGIIPNSFAHIFGHIAKA-ENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDR 165 (333)
T ss_pred ------------------cccccchHHHHHHHHHHHHhhc-cCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCC
Confidence 1245699999999999998764 347899999999999999999999865 68999999999
Q ss_pred CcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh--hccccchHHHHHHh
Q psy5719 238 VPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE--AENKKRSLEECVDA 308 (378)
Q Consensus 238 ~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e--~~~in~Sll~lVDL 308 (378)
++++ .+++++.+.|.+++..++..| |.++.|.+| |||+||++........+ ...+..|+|+||||
T Consensus 166 ~~~v------~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDL 239 (333)
T cd01371 166 GVYV------KDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLVDL 239 (333)
T ss_pred CEEe------CCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEEC
Confidence 9988 799999999999999999987 888888887 99999999976544432 33366789999999
Q ss_pred hcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 309 AGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||| ....+.. +++++|+.+||+||++|++||.+|+.. ++.+.++||+-+
T Consensus 240 AGsEr-----~~~~~~~--~~~~~E~~~iN~sL~~L~~vi~al~~~-~~~~ipyR~SkL 290 (333)
T cd01371 240 AGSER-----QSKTGAT--GDRLKEATKINLSLSALGNVISALVDG-KSTHIPYRDSKL 290 (333)
T ss_pred CCCCc-----ccccCCc--hhhhHhHhhhhhHHHHHHHHHHHHHhC-CCCcCCCccCHH
Confidence 99999 3333333 499999999999999999999999864 345788888753
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.6e-50 Score=393.94 Aligned_cols=227 Identities=29% Similarity=0.394 Sum_probs=199.1
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||||||||||||||+|..
T Consensus 45 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~---------------------- 102 (319)
T cd01376 45 ETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP---------------------- 102 (319)
T ss_pred CccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc----------------------
Confidence 4578999999999999999999999999999999999999999999999999999862
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
..+||+|+++.+||+.+... .+.|.|.+||+|||||.++|||++....+.+++++.+++
T Consensus 103 -------------------~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~ 161 (319)
T cd01376 103 -------------------NEPGLIPRTLSDLLRMGRKQ--AWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNI 161 (319)
T ss_pred -------------------CccchHHHHHHHHHHHHhhc--cccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCE
Confidence 24499999999999987653 478999999999999999999998888999999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhccc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSE 312 (378)
++ .+++++.+.|.+++..++..+ |.++.|.+| |||+||++...+.. ......|+++||||||||
T Consensus 162 ~v------~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~---~~~~~~s~l~~VDLAGsE 232 (319)
T cd01376 162 LI------VGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPA---SNIQLEGKLNLIDLAGSE 232 (319)
T ss_pred Ee------eCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEEC---CCceEEEEEEEEECCCCC
Confidence 88 799999999999999998877 888899887 99999998854332 122567889999999999
Q ss_pred chhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 313 ra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
| ..+.+..| .+++|+..||+||++||+||.+|+.. .++.++||+.+
T Consensus 233 ~-----~~~~~~~g--~~~~e~~~iN~Sl~~L~~vi~aL~~~--~~~ipyr~S~L 278 (319)
T cd01376 233 D-----NRRTGNEG--IRLKESAAINSSLFVLSKVVDALNKG--LPRIPYRESKL 278 (319)
T ss_pred c-----ccccCCcc--chhhhhhhhhhhHHHHHHHHHHHhcC--CCcCCCccCHH
Confidence 8 33344444 99999999999999999999999865 47889998864
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.7e-50 Score=394.11 Aligned_cols=232 Identities=34% Similarity=0.480 Sum_probs=205.0
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|..
T Consensus 38 ~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~---------------------- 95 (321)
T cd01374 38 PGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE---------------------- 95 (321)
T ss_pred CCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCC----------------------
Confidence 4689999999999999999999999999999999999999999999999999999852
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
..+||+||++++||+.+... .+..|.|.+||+|||||.++|||++....+.+++|+.+++
T Consensus 96 -------------------~~~Gli~r~~~~lf~~~~~~-~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~ 155 (321)
T cd01374 96 -------------------QEPGIIPLAVRDIFQRIQDT-PDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGV 155 (321)
T ss_pred -------------------CCCchHHHHHHHHHHHHhcc-cCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCE
Confidence 33499999999999998664 3678999999999999999999999888999999999998
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh--hccccchHHHHHHhhc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE--AENKKRSLEECVDALR 310 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e--~~~in~Sll~lVDLAG 310 (378)
++ .+++++.+.|++++..++..+ |+.+.|.+| |||++|++...+..... ...+..|+++||||||
T Consensus 156 ~v------~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 156 VV------AGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred Ee------CCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 88 799999999999999999988 888888887 99999999866544332 2446678999999999
Q ss_pred ccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 311 SEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|||+.. .+ .+++++|+.+||+||++|++||.+|+....+.+.++||+-+
T Consensus 230 sE~~~~-----~~---~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkL 278 (321)
T cd01374 230 SERASQ-----TG---AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKL 278 (321)
T ss_pred CCcccc-----CC---CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHH
Confidence 999444 33 34999999999999999999999999977678889988764
No 19
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=4.1e-50 Score=392.17 Aligned_cols=256 Identities=47% Similarity=0.619 Sum_probs=216.6
Q ss_pred hhhcceeccccccCC----C----------CCc---CCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceee
Q psy5719 59 RIKEAVRQKNLARRG----P----------APQ---IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121 (378)
Q Consensus 59 ~~~~~~~~~~~~~~~----~----------~~~---~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~a 121 (378)
.|++++|++|+...+ + .+. ....+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 3 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~a 82 (325)
T cd01369 3 NIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFA 82 (325)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEE
Confidence 567777777765432 0 111 13468999999999999999999999999999999999999999
Q ss_pred eccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccccc
Q psy5719 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201 (378)
Q Consensus 122 yG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~ 201 (378)
||+|||||||||+|.... +...||+||++.+||+.+......
T Consensus 83 yG~tgSGKT~Tm~G~~~~--------------------------------------~~~~Giipr~~~~Lf~~~~~~~~~ 124 (325)
T cd01369 83 YGQTGSGKTYTMEGPPGD--------------------------------------PELKGIIPRIVHDIFEHISSMDEN 124 (325)
T ss_pred eCCCCCCceEEecCCCCc--------------------------------------cccCChHHHHHHHHHHHHhhccCC
Confidence 999999999999996321 245699999999999999887777
Q ss_pred ceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc-
Q psy5719 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL- 277 (378)
Q Consensus 202 ~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln- 277 (378)
..|.|++||+|||||.++|||++....+.+++++.+++++ .+++++.+.|.+++..++..+ |+.+.|.+|
T Consensus 125 ~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v------~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~ 198 (325)
T cd01369 125 LEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYV------KGLTERFVSSPEEVLEVINEGKSNRAVASTNMNE 198 (325)
T ss_pred ceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEE------cCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCC
Confidence 8999999999999999999999988899999999999998 799999999999999999987 888899887
Q ss_pred ---chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5719 278 ---LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDV 354 (378)
Q Consensus 278 ---rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~ 354 (378)
|||+||++...+.... ...+..|+++||||||||| ..+.++.+ ++++|+..||+||++|++||.+|+..
T Consensus 199 ~ssRSH~i~~i~v~~~~~~-~~~~~~s~l~~VDLAGsE~-----~~~~~~~~--~~~~e~~~in~sl~~L~~vi~aL~~~ 270 (325)
T cd01369 199 ESSRSHSIFLITLKQENVE-TGSKKRGKLFLVDLAGSEK-----VSKTGAEG--QTLEEAKKINKSLSALGNVINALTDG 270 (325)
T ss_pred ccccccEEEEEEEEEEecC-CCCEEEEEEEEEECCCCCc-----ccccCCcc--hhHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 9999999986544332 2335678899999999999 34444444 99999999999999999999999864
Q ss_pred hhhhhhhhhhHHH
Q psy5719 355 HQKQVAELRDEIA 367 (378)
Q Consensus 355 ~~~~~~~~~d~~~ 367 (378)
. +.+.++||+.+
T Consensus 271 ~-~~~vpyR~S~L 282 (325)
T cd01369 271 K-STHIPYRDSKL 282 (325)
T ss_pred C-CCcCCCccCHH
Confidence 3 37889998754
No 20
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=9e-50 Score=393.70 Aligned_cols=241 Identities=30% Similarity=0.401 Sum_probs=202.9
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|........
T Consensus 46 ~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~---------------- 109 (352)
T cd01364 46 STKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGS---------------- 109 (352)
T ss_pred cceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccc----------------
Confidence 4688999999999999999999999999999999999999999999999999999975432100
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc---cCCCccccc--
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHED-- 234 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~---~~~L~i~ed-- 234 (378)
....+...||+||++.+||+.+... ...|.|++||+|||||.++|||++. ..++.++++
T Consensus 110 --------------~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~ 173 (352)
T cd01364 110 --------------TWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTN 173 (352)
T ss_pred --------------cccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccC
Confidence 0112356799999999999998764 6789999999999999999999986 578999999
Q ss_pred CCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh--hhccccchHHHH
Q psy5719 235 KNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK--EAENKKRSLEEC 305 (378)
Q Consensus 235 ~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~--e~~~in~Sll~l 305 (378)
..+++++ .+++++.+.|++++..++..| |+++.|.+| |||++|++........ ....+..|+++|
T Consensus 174 ~~~g~~v------~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~ 247 (352)
T cd01364 174 NKGGVVI------QGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNL 247 (352)
T ss_pred cCCCEEe------CCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEE
Confidence 5888888 799999999999999999987 888999887 9999999886543222 112245688999
Q ss_pred HHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 306 VDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 306 VDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|||||||| ..+.++.+ .+++|+..||+||++||+||++|+... ++.++||+-+
T Consensus 248 VDLAGsE~-----~~~~~~~~--~~~~e~~~iN~SL~~L~~vi~al~~~~--~~vpyR~S~L 300 (352)
T cd01364 248 VDLAGSEN-----IGRSGAEN--KRAREAGNINQSLLTLGRVINALVEKS--PHIPYRESKL 300 (352)
T ss_pred EECCCccc-----cccccCcc--hhhHHHhhhhHHHHHHHHHHHHHHcCC--CCCCCcccHH
Confidence 99999999 44444444 899999999999999999999999764 7888998754
No 21
>KOG0241|consensus
Probab=100.00 E-value=1.2e-49 Score=406.77 Aligned_cols=235 Identities=29% Similarity=0.412 Sum_probs=209.6
Q ss_pred CCCeeEecccccCCC-------CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhh
Q psy5719 79 GKGKFYLFDKVFKPN-------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLA 151 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~-------~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~ 151 (378)
+.+++|+||+.|++. +.|+.||+.+...+|+++|+|||+||||||||||||||||+|..+.
T Consensus 50 k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Q------------ 117 (1714)
T KOG0241|consen 50 KGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQ------------ 117 (1714)
T ss_pred CCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCC------------
Confidence 568999999999873 4799999999999999999999999999999999999999997433
Q ss_pred cccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccc--cCC
Q psy5719 152 GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVS--KVN 228 (378)
Q Consensus 152 g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~--~~~ 228 (378)
+|||||.+..||..+... .+...|.|.|||+|||||.+||||.|. ...
T Consensus 118 -----------------------------pGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk~ssqt 168 (1714)
T KOG0241|consen 118 -----------------------------PGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPKGSSQT 168 (1714)
T ss_pred -----------------------------CCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCCCCcce
Confidence 399999999999999764 567899999999999999999999985 467
Q ss_pred CcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhcc---c
Q psy5719 229 LSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAEN---K 298 (378)
Q Consensus 229 L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~---i 298 (378)
|.++++.--|.|| .|+++..|.|..++-.++..| |++++|+|| |||++|.+...+.-.+.... .
T Consensus 169 lkVrehsvlGp~v------dGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 169 LKVREHSVLGPYV------DGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred eEEeecccccccc------cchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 9999999999998 899999999999999998877 999999999 99999977655443332221 5
Q ss_pred cchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhh----hhhhhhHHH
Q psy5719 299 KRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQ----VAELRDEIA 367 (378)
Q Consensus 299 n~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~----~~~~~d~~~ 367 (378)
+.|++.||||||||| ..++|++| +|++|+.|||+||++||.||.|||+....+ +.+|||+.+
T Consensus 243 KvsklslVDLAgser-----asktga~g--~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVL 308 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSER-----ASKTGAAG--SRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVL 308 (1714)
T ss_pred heeeeeEEEeccccc-----cccccchh--hhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHH
Confidence 568899999999999 78888888 999999999999999999999999999888 999999975
No 22
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=6e-48 Score=377.50 Aligned_cols=251 Identities=31% Similarity=0.471 Sum_probs=212.9
Q ss_pred hhhcceeccccccCC---CC-------C---------cCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcce
Q psy5719 59 RIKEAVRQKNLARRG---PA-------P---------QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTI 119 (378)
Q Consensus 59 ~~~~~~~~~~~~~~~---~~-------~---------~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i 119 (378)
.+++++|++|+...+ +. . .....+.|.||+||+++++|++||+. +.|+|+++++|+|+||
T Consensus 3 ~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i 81 (329)
T cd01366 3 NIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCI 81 (329)
T ss_pred CEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEE
Confidence 367788888876653 11 0 01345789999999999999999998 5999999999999999
Q ss_pred eeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 120 FAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 120 ~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
||||+|||||||||+|.. ..+||+|+++++||..+....
T Consensus 82 ~ayG~tgSGKT~tl~G~~-----------------------------------------~~~Gli~r~~~~lf~~~~~~~ 120 (329)
T cd01366 82 FAYGQTGSGKTYTMEGPP-----------------------------------------ENPGIIPRALEQLFNTAEELK 120 (329)
T ss_pred EEeCCCCCCCcEEecCCC-----------------------------------------CCCCcHHHHHHHHHHHHHhhh
Confidence 999999999999999863 344999999999999997764
Q ss_pred c-cceeEEEEeeeeeeccccccccccc---cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhh
Q psy5719 200 E-NLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELG 272 (378)
Q Consensus 200 ~-~~~~~V~vS~~EIYnE~i~DLL~~~---~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~ 272 (378)
. +..|.|++||+|||||.++|||.+. ...+.+++++.+++++ .+++++.+.|++++..++..+ |..+
T Consensus 121 ~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i------~~l~~~~v~s~~e~~~~l~~~~~~R~~~ 194 (329)
T cd01366 121 EKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYV------TNLTEVPVSSPEEVTRLLNLGSKNRSVA 194 (329)
T ss_pred ccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEe------cCCEEEEeCCHHHHHHHHHHHHhhcccc
Confidence 4 7899999999999999999999986 6789999999999888 799999999999999999877 8888
Q ss_pred hhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHH
Q psy5719 273 ETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQM 348 (378)
Q Consensus 273 ~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi 348 (378)
.|.+| |||+||++...+.... ......|++.||||||||+.. ..++.+ .+++|+..||+||++|++||
T Consensus 195 ~t~~n~~sSRsH~i~~i~v~~~~~~-~~~~~~s~l~~VDLaGsE~~~-----~~~~~~--~~~~e~~~in~Sl~~L~~vl 266 (329)
T cd01366 195 STNMNEHSSRSHAVFQLKIRGTNLQ-TGEQTRGKLNLVDLAGSERLK-----KSGATG--DRLKEAQAINKSLSALGDVI 266 (329)
T ss_pred cccccCCCCCccEEEEEEEEEEcCC-CCcEEEEEEEEEECCCCcccc-----cccccc--hhhHhHhhhhhHHHHHHHHH
Confidence 88887 9999999986654433 334667899999999999944 333344 99999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHH
Q psy5719 349 DQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 349 ~aL~~~~~~~~~~~~d~~~ 367 (378)
.+|+.. ..+.++||+.+
T Consensus 267 ~~l~~~--~~~ipyr~S~L 283 (329)
T cd01366 267 SALRSK--DSHVPYRNSKL 283 (329)
T ss_pred HHHhcC--CCcCCCcccHh
Confidence 999876 78888988764
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=3.9e-48 Score=379.59 Aligned_cols=239 Identities=35% Similarity=0.496 Sum_probs=205.5
Q ss_pred CCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcc
Q psy5719 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTI 157 (378)
Q Consensus 78 ~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i 157 (378)
....+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|.
T Consensus 37 ~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~--------------------- 95 (335)
T PF00225_consen 37 SQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGS--------------------- 95 (335)
T ss_dssp TTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBS---------------------
T ss_pred CCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeecccccccccccccc---------------------
Confidence 35568999999999999999999999999999999999999999999999999999985
Q ss_pred ccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccccc--ceeEEEEeeeeeeccccccccccc----cCCCcc
Q psy5719 158 FAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN--LEFIIKVSYFEIYMDKIRDLLDVS----KVNLSV 231 (378)
Q Consensus 158 ~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~--~~~~V~vS~~EIYnE~i~DLL~~~----~~~L~i 231 (378)
.....+||+|+++.+||..+...... ..|.|++||+|||||.++|||++. ..++.+
T Consensus 96 ------------------~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i 157 (335)
T PF00225_consen 96 ------------------NDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKI 157 (335)
T ss_dssp ------------------TSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEE
T ss_pred ------------------ccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccce
Confidence 11245699999999999999876544 799999999999999999999987 357999
Q ss_pred cccCCCC-cEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhcc---ccc
Q psy5719 232 HEDKNRV-PFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAEN---KKR 300 (378)
Q Consensus 232 ~ed~~~~-~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~---in~ 300 (378)
++|+..+ +++ .+++++.+.|.+++..++..+ |..+.+.+| |||+||++...+........ ...
T Consensus 158 ~~~~~~g~~~i------~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~ 231 (335)
T PF00225_consen 158 REDSNKGSVYI------KGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKH 231 (335)
T ss_dssp EEETTTEEEEE------TTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEE
T ss_pred eecccccccee------eccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceee
Confidence 9999876 777 799999999999999999977 888888877 99999999977655544433 577
Q ss_pred hHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 301 Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|++.||||||+||... .++. ++.+++|+..||+||++|++||.+|+......+.++||+-+
T Consensus 232 s~l~~vDLaGsE~~~~-----~~~~-~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkL 292 (335)
T PF00225_consen 232 SRLTFVDLAGSERLKK-----SGAS-DGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKL 292 (335)
T ss_dssp EEEEEEEEEESTGGCG-----CSSS-SHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHH
T ss_pred cceeeeeccccccccc-----cccc-ccccccccceecchhhhhhhhHhhhhccccchhhhhhcccc
Confidence 8999999999998333 2221 25889999999999999999999999997788899998864
No 24
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.3e-46 Score=368.90 Aligned_cols=235 Identities=36% Similarity=0.498 Sum_probs=206.2
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|.||+||+++++|++||+.++.|+|+.+++|+|+|||+||+|||||||||+|+.
T Consensus 43 ~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~--------------------- 101 (335)
T smart00129 43 KEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTP--------------------- 101 (335)
T ss_pred CCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCC---------------------
Confidence 45688999999999999999999999999999999999999999999999999999852
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCC
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRV 238 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~ 238 (378)
..+||+|+++.+||+.+........|.|++||+|||+|.++|||++.+..+.+++|+.++
T Consensus 102 --------------------~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~ 161 (335)
T smart00129 102 --------------------DSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGG 161 (335)
T ss_pred --------------------CCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCC
Confidence 334999999999999997766678999999999999999999999999999999999999
Q ss_pred cEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhh-hhhccccchHHHHHHhhc
Q psy5719 239 PFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESM-KEAENKKRSLEECVDALR 310 (378)
Q Consensus 239 ~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l-~e~~~in~Sll~lVDLAG 310 (378)
+++ .+++++.+.|.+++..++..+ |.++.|.+| |||.||++...+... ........|++.||||||
T Consensus 162 ~~i------~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaG 235 (335)
T smart00129 162 VYV------KGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAG 235 (335)
T ss_pred EEe------cCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCC
Confidence 988 799999999999999999877 888888887 999999999764422 222336678899999999
Q ss_pred ccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 311 SEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
+||... .++. +++++|+..||+||++|++||.+|++.....+.++||+.+
T Consensus 236 se~~~~-----~~~~--~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~L 285 (335)
T smart00129 236 SERASK-----TGAE--GDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKL 285 (335)
T ss_pred CCcccc-----ccCh--hHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHh
Confidence 999433 3333 4899999999999999999999999876677888888764
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=4.3e-46 Score=364.15 Aligned_cols=234 Identities=37% Similarity=0.488 Sum_probs=203.3
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|.||+||+++++|++||+.++.|+|+++++|+|+||||||+|||||||||+|+.
T Consensus 43 ~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~---------------------- 100 (328)
T cd00106 43 GPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSP---------------------- 100 (328)
T ss_pred CceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCC----------------------
Confidence 4689999999999999999999999999999999999999999999999999999863
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccc-cceeEEEEeeeeeeccccccccccc--cCCCcccccCC
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NLEFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKN 236 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~-~~~~~V~vS~~EIYnE~i~DLL~~~--~~~L~i~ed~~ 236 (378)
..+||+|+++++||+.+..... ...+.|.+||+|||+|.++|||.+. ...+.+++|+.
T Consensus 101 -------------------~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~ 161 (328)
T cd00106 101 -------------------KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPK 161 (328)
T ss_pred -------------------CCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCC
Confidence 3449999999999999876533 6789999999999999999999997 88999999999
Q ss_pred CCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhc-cccchHHHHHHh
Q psy5719 237 RVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAE-NKKRSLEECVDA 308 (378)
Q Consensus 237 ~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~-~in~Sll~lVDL 308 (378)
+++++ .+++++.+.|.+++..++..+ |..+.|.+| |||.||++........... ....|++.||||
T Consensus 162 ~~~~v------~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDL 235 (328)
T cd00106 162 GGVYV------KGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDL 235 (328)
T ss_pred CCEEE------eCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEEC
Confidence 88888 799999999999999999877 888888886 9999999996644332221 256788999999
Q ss_pred hcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 309 AGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||+|+... .+. .+.+++|++.||+||++|++||.+|+......+.++||+-+
T Consensus 236 aGse~~~~-----~~~--~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkL 287 (328)
T cd00106 236 AGSERAKK-----TGA--EGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKL 287 (328)
T ss_pred CCCCcccc-----cCC--chhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHH
Confidence 99999433 222 34899999999999999999999999877567888888764
No 26
>KOG0244|consensus
Probab=100.00 E-value=2.7e-45 Score=380.71 Aligned_cols=264 Identities=26% Similarity=0.349 Sum_probs=227.1
Q ss_pred hhhhhHHHHhhhcceeccccccCCCCCcCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCc
Q psy5719 50 RKRYQYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGK 129 (378)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGK 129 (378)
|+.-+.|.. .|+-++-.+.++.|++..+...+|+||+||+..+.|.++|+.+|.|+++.+|+|||+|++|||||||||
T Consensus 2 Rpl~~~e~~--~g~~~c~~~~~~~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgk 79 (913)
T KOG0244|consen 2 RPLKQMEEE--QGCRRCTEVSPRTPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGK 79 (913)
T ss_pred CCccchHHH--hcchhhcccCCCCCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCc
Confidence 344444444 466777668899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEe
Q psy5719 130 THTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVS 209 (378)
Q Consensus 130 TyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS 209 (378)
||||.+.+... ....|++||+++++|..+.... ...|.|.||
T Consensus 80 Tytmgt~~~~~-------------------------------------~~~~Gvipr~v~~~f~~i~~~~-~~~f~i~vs 121 (913)
T KOG0244|consen 80 TYTMGTNDAPA-------------------------------------QDTVGVIPRAVSTLFTRIGKTE-SFVFRITVS 121 (913)
T ss_pred eeecccccccc-------------------------------------cccCCcCcchHHHHHHHHHhhh-ccceeeeee
Confidence 99997652211 1125999999999999997753 388999999
Q ss_pred eeeeecccccccccccc--CCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chh
Q psy5719 210 YFEIYMDKIRDLLDVSK--VNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSH 280 (378)
Q Consensus 210 ~~EIYnE~i~DLL~~~~--~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH 280 (378)
|+|||++.++|||.|.+ .++.+++ +.+++.+ .++|+..+.+..+.+..+..| |+++.|+|| |||
T Consensus 122 ~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~------~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRsh 194 (913)
T KOG0244|consen 122 FVELYNEEVLDLLKPSRLKANIKLRE-PKGEITI------RGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSH 194 (913)
T ss_pred eeeccchhhhhhcChhhhhhceeccc-cCCceEE------EeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhh
Confidence 99999999999999654 4567777 6777877 799999999999999999988 999999999 999
Q ss_pred hHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhh
Q psy5719 281 HEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360 (378)
Q Consensus 281 ~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~ 360 (378)
+||++...+.........-+|+++||||||||| ..+++++| +|++|+.+||.+|++||+||+||.+.....+.
T Consensus 195 Aifti~lkq~kk~~~~s~~~sKlhlVDLAGSER-----~kkT~a~g--drlKEgInIN~gLL~LgnVIsaLg~~kk~~~v 267 (913)
T KOG0244|consen 195 AIFTITLKQRKKLSKRSSFCSKLHLVDLAGSER-----VKKTKAEG--DRLKEGININGGLLALGNVISALGEAKKGGEV 267 (913)
T ss_pred HHHHHHHHHHHHhhccchhhhhhheeecccccc-----ccccccch--hhhhhccCcchHHHHHHHHHHHHHhhhcCCcc
Confidence 999999766555444445668999999999999 77777777 99999999999999999999999999988899
Q ss_pred hhhhHHH
Q psy5719 361 ELRDEIA 367 (378)
Q Consensus 361 ~~~d~~~ 367 (378)
++||+..
T Consensus 268 pyRdSkl 274 (913)
T KOG0244|consen 268 PYRDSKL 274 (913)
T ss_pred cchHHHH
Confidence 9999863
No 27
>KOG0246|consensus
Probab=100.00 E-value=1.3e-44 Score=357.26 Aligned_cols=257 Identities=28% Similarity=0.341 Sum_probs=207.8
Q ss_pred HHhHhhhh---hhHHHHhhhcceeccccccCCCC---------------------Cc-----CCCCeeEecccccCCCCC
Q psy5719 45 GAMKDRKR---YQYEVDRIKEAVRQKNLARRGPA---------------------PQ-----IGKGKFYLFDKVFKPNAT 95 (378)
Q Consensus 45 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-----~~~~~~F~FD~Vf~~~~~ 95 (378)
+.+..++. --....+|++|+|-+|+-..+-. .- .-..+.|.||++||+.++
T Consensus 192 ~~L~~~pls~~~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~s 271 (676)
T KOG0246|consen 192 EQLDSSPLSMGDGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESAS 271 (676)
T ss_pred hhhcccccccCCCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccc
Confidence 33554442 33456678888888875443211 00 013467999999999999
Q ss_pred hHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccC
Q psy5719 96 QEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVM 175 (378)
Q Consensus 96 Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~ 175 (378)
+++||..+++|+|+.+|+|--+|+||||||||||||||.|.+. ||.
T Consensus 272 Ne~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfs---------------------------gk~------- 317 (676)
T KOG0246|consen 272 NELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFS---------------------------GKA------- 317 (676)
T ss_pred hHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccC---------------------------ccc-------
Confidence 9999999999999999999999999999999999999998743 221
Q ss_pred CCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccc
Q psy5719 176 GDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSME 254 (378)
Q Consensus 176 ~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~ 254 (378)
.....||.-.+..++|..+... -....+.|+++|+|||+.++||||+. +..|.+.||.++.+.| +|+++..
T Consensus 318 -q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqV------VGLqE~~ 389 (676)
T KOG0246|consen 318 -QDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQV------VGLQEEE 389 (676)
T ss_pred -ccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc-ccceEEeecCCceEEE------eeceeee
Confidence 1124599999999999999763 34678999999999999999999995 7899999999999998 8999999
Q ss_pred cCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhc-cccchHHHHHHhhcccchhhhhhhhhhhcc
Q psy5719 255 SSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAE-NKKRSLEECVDALREECAKLKAAEQVTAVS 326 (378)
Q Consensus 255 v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~-~in~Sll~lVDLAGSEra~~~~~e~~~~~~ 326 (378)
|.+.++++++++.| |+.|.|..| |||+||+|- +.... ..-.++++||||||+|| +.-+...
T Consensus 390 v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIi-----lr~~~~~k~hGKfSlIDLAGnER-----GaDts~a- 458 (676)
T KOG0246|consen 390 VSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQII-----LRKHGEFKLHGKFSLIDLAGNER-----GADTSSA- 458 (676)
T ss_pred ccCHHHHHHHHHhcccccccCcccCcccccccceeEeee-----eecCCcceeEeEEEEEEccCCcc-----CCccccc-
Confidence 99999999999999 999999877 999999988 44333 25567789999999999 3333222
Q ss_pred hhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q psy5719 327 SKEKAEEKEKANEVKVALEQQMDQLRDV 354 (378)
Q Consensus 327 ~~~rl~E~~~IN~SLs~Lg~vi~aL~~~ 354 (378)
+.+.-.|++.|||||+||--||-||..+
T Consensus 459 dRqtRlEGAEINKSLLALKECIRaLg~n 486 (676)
T KOG0246|consen 459 DRQTRLEGAEINKSLLALKECIRALGRN 486 (676)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHhcCC
Confidence 3466689999999999999999888654
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-44 Score=369.79 Aligned_cols=263 Identities=30% Similarity=0.395 Sum_probs=221.9
Q ss_pred hhhhhhHHHHhhhcceeccccccC--------CCCCcC--CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcc
Q psy5719 49 DRKRYQYEVDRIKEAVRQKNLARR--------GPAPQI--GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGT 118 (378)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~ 118 (378)
.+.+++..++.++..++..|-..+ ...+.. .+...|.||+||+|.++|++||+.++.|++++++.|||+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~T 92 (568)
T COG5059 13 LSSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCT 92 (568)
T ss_pred ccccceeeecCceEEEeecCCCcchheeecccccccccccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccce
Confidence 456777888888888877642222 001111 1256799999999999999999999999999999999999
Q ss_pred eeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 119 IFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
|||||||||||||||.|.. ...|++|+++..||+.+...
T Consensus 93 vfayGqTgsgKtyt~~G~~-----------------------------------------~~~Gii~~~l~~lf~~l~~~ 131 (568)
T COG5059 93 VFAYGQTGSGKTYTMSGTE-----------------------------------------EEPGIIPLSLKELFSKLEDL 131 (568)
T ss_pred EEEEcccCCCceeEeecCc-----------------------------------------cccchHHHHHHHHHHHHHhc
Confidence 9999999999999999863 34499999999999999887
Q ss_pred cccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhh
Q psy5719 199 DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETR 275 (378)
Q Consensus 199 ~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ 275 (378)
.....|.|.+||+|||||.++|||.+....+.+++|...++.+ .+++...+.++++.+.++..| |+++.|+
T Consensus 132 ~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v------~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te 205 (568)
T COG5059 132 SMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKV------AGLTEKHVSSKEEILDLLRKGEKNRTTASTE 205 (568)
T ss_pred ccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceEe------ecceEEecCChHHHHHHHHHhhhhcccccch
Confidence 7678899999999999999999999887778999999999998 789999999999999999987 9999999
Q ss_pred cc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHH
Q psy5719 276 LL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL 351 (378)
Q Consensus 276 ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL 351 (378)
+| |||+||++...+....... ...+++++|||||||+ ..+++..+ .|++|+.+||+||++||+||++|
T Consensus 206 ~n~~ssRshsi~~i~~~~~~~~~~~-~~~~~l~lvDLagSE~-----~~~~~~~~--~r~~E~~~iN~sLl~Lg~vI~~L 277 (568)
T COG5059 206 INDESSRSHSIFQIELASKNKVSGT-SETSKLSLVDLAGSER-----AARTGNRG--TRLKEGASINKSLLTLGNVINAL 277 (568)
T ss_pred hccccccceEEEEEEEEEeccCccc-eecceEEEEeeccccc-----cchhhccc--chhhhhhhhHhhHHHHHHHHHHH
Confidence 98 9999999985433322222 2336899999999999 44444455 99999999999999999999999
Q ss_pred HHHhhhhhhhhhhHH
Q psy5719 352 RDVHQKQVAELRDEI 366 (378)
Q Consensus 352 ~~~~~~~~~~~~d~~ 366 (378)
.+.....+.++||+-
T Consensus 278 ~~~~~~~~ipyResk 292 (568)
T COG5059 278 GDKKKSGHIPYRESK 292 (568)
T ss_pred hccccCCccchhhhH
Confidence 998888889999875
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.96 E-value=4.9e-31 Score=237.94 Aligned_cols=151 Identities=28% Similarity=0.332 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCC
Q psy5719 99 VYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDP 178 (378)
Q Consensus 99 vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~ 178 (378)
||+.++ |+|+.+++|+|+||||||||||||||||+|..
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~----------------------------------------- 45 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKR----------------------------------------- 45 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCC-----------------------------------------
Confidence 999998 99999999999999999999999999999852
Q ss_pred CCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCH
Q psy5719 179 NKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQA 258 (378)
Q Consensus 179 ~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss 258 (378)
...|++|+++.+ .
T Consensus 46 ~~~Giip~~~~~-------------------------------------------------------------------~ 58 (186)
T cd01363 46 EGAGIIPRTVTD-------------------------------------------------------------------V 58 (186)
T ss_pred CCCCcchHHHHH-------------------------------------------------------------------H
Confidence 344999988877 2
Q ss_pred HHHHHHHHHHHHhhhhhcc----chhhHHHHhhhhhhhhh--hccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHH
Q psy5719 259 EEHKKAIEYEKELGETRLL----LSHHEARMKSLQESMKE--AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAE 332 (378)
Q Consensus 259 ~~~~~ll~~gr~~~~t~ln----rSH~if~i~~~~~~l~e--~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~ 332 (378)
.+++......|+++.|.+| |||++|++...+..... ......|+++|||||||||... .+.. +++++
T Consensus 59 ~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~~~~~~~s~l~lVDLAGsE~~~~-----~~~~--~~~~~ 131 (186)
T cd01363 59 IDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERIDF-----SGAE--GSRLT 131 (186)
T ss_pred HHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCCccceeeeeEEEEEccccccccc-----cCCc--hhhHH
Confidence 2222222233777888776 99999999866443322 1235568899999999999433 3333 48999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 333 EKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 333 E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|++.||+||++|++||.+|++. +++.++||+.+
T Consensus 132 e~~~in~sl~~L~~~i~~l~~~--~~~vpyr~SkL 164 (186)
T cd01363 132 ETANINKSLSTLGNVISALAER--DSHVPYRESKL 164 (186)
T ss_pred HHHHHhhHHHHHHHHHHHHhcC--CCCCCCcccHH
Confidence 9999999999999999999874 46788998853
No 30
>KOG0243|consensus
Probab=98.86 E-value=3.3e-10 Score=121.61 Aligned_cols=102 Identities=38% Similarity=0.536 Sum_probs=72.5
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchh---hhHHHHHhh
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIP---RIVNDIFNH 194 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giip---r~~~~lf~~ 194 (378)
+-||||+.+++++...+ |+|.-+|.||||+||||||||.||||||.|...... |..| +++++....
T Consensus 93 ~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~--g~l~~~aGIIPRal~~ 170 (1041)
T KOG0243|consen 93 IDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKN--GELPSEAGIIPRALRQ 170 (1041)
T ss_pred ccceeecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCccccc--CCCCccCCcchHHHHH
Confidence 57999999999988766 889999999999999999999999999999866554 5555 566666666
Q ss_pred hhcccccceeEEEEeeeeeeccccccccccccCCCcccccCC
Q psy5719 195 IYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKN 236 (378)
Q Consensus 195 l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~ 236 (378)
|+. ..+-.=....+.| .+..|++..-.+|..-++..
T Consensus 171 IFd---~Le~~~~EYsvKV---SfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 171 IFD---TLEAQGAEYSVKV---SFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred HHH---HHHhcCCeEEEEE---EehhhhhHHHHHhcCCcccc
Confidence 654 2221112222222 45667776666766666544
No 31
>KOG4280|consensus
Probab=98.72 E-value=3.9e-09 Score=108.43 Aligned_cols=72 Identities=36% Similarity=0.612 Sum_probs=57.6
Q ss_pred ccCCCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCC-CchhhhHHHHH
Q psy5719 123 GQTSSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ-GIIPRIVNDIF 192 (378)
Q Consensus 123 G~tgSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~-Giipr~~~~lf 192 (378)
|..+..|+||+.+.+....++ +||..+|+|||+|||||||||+|||||| ... .-.-.+++..|
T Consensus 46 ~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM-------~G~~~~~~GiiPraf 118 (574)
T KOG4280|consen 46 GIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTM-------IGPDPELRGLIPRAF 118 (574)
T ss_pred cccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEe-------eCCChhhCCchhHHH
Confidence 456788999999988755554 8999999999999999999999999999 322 22336788888
Q ss_pred hhhhccccc
Q psy5719 193 NHIYQMDEN 201 (378)
Q Consensus 193 ~~l~~~~~~ 201 (378)
+.++..-..
T Consensus 119 ~~LF~~I~~ 127 (574)
T KOG4280|consen 119 EHLFRHIDE 127 (574)
T ss_pred HHHHHHHHh
Confidence 888775443
No 32
>KOG0239|consensus
Probab=98.70 E-value=3.4e-08 Score=104.50 Aligned_cols=95 Identities=28% Similarity=0.346 Sum_probs=70.7
Q ss_pred cceeeeccCCCCcc----eEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCC-CCc
Q psy5719 117 GTIFAYGQTSSGKT----HTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNK-QGI 183 (378)
Q Consensus 117 ~~i~ayG~tgSGKT----yTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~-~Gi 183 (378)
..+..-+.++..|+ |+..-.+++..++ ++|..+|||||+|||||||||||||||| .. .+-
T Consensus 344 ~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM-------~G~~~~ 416 (670)
T KOG0239|consen 344 GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTM-------SGPTPE 416 (670)
T ss_pred ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccc-------cCCCcc
Confidence 34666677777777 8887777766665 8999999999999999999999999999 43 346
Q ss_pred hhhhHHHHHhhhhcccccceeEEEEeeeeeeccccc
Q psy5719 184 IPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIR 219 (378)
Q Consensus 184 ipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~ 219 (378)
.|.++......++.......- .|..=+++..-.||
T Consensus 417 ~~Giipral~~lF~~~~~~~~-g~~y~~~~s~~EIY 451 (670)
T KOG0239|consen 417 DPGIIPRALEKLFRTITSLKS-GWKYDKTVSMLEIY 451 (670)
T ss_pred cCCccHHHHHHHHHHHHhhcc-CceEEeeeehhHHH
Confidence 888999988888876554444 45554555433333
No 33
>PLN03188 kinesin-12 family protein; Provisional
Probab=98.56 E-value=3.5e-08 Score=107.68 Aligned_cols=74 Identities=31% Similarity=0.537 Sum_probs=60.7
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCC---CCCCCchhhhHHHHHhh
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGD---PNKQGIIPRIVNDIFNH 194 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~---~~~~Giipr~~~~lf~~ 194 (378)
.+++|++.+.+++..++ |+|+.+|+|||+||||||||||||||||.|.... ....+--++++..+++.
T Consensus 130 ~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaled 209 (1320)
T PLN03188 130 NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFER 209 (1320)
T ss_pred eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHH
Confidence 47899999988776655 8899999999999999999999999999997432 22345678999999999
Q ss_pred hhcccc
Q psy5719 195 IYQMDE 200 (378)
Q Consensus 195 l~~~~~ 200 (378)
++....
T Consensus 210 LF~~I~ 215 (1320)
T PLN03188 210 LFARIN 215 (1320)
T ss_pred HHHHHH
Confidence 987543
No 34
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=98.50 E-value=9.7e-08 Score=94.04 Aligned_cols=73 Identities=33% Similarity=0.563 Sum_probs=59.5
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCC-CCCchhhhHHHHHhhhhc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN-KQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~-~~Giipr~~~~lf~~l~~ 197 (378)
.|+|++...+++..++ |+|+.+++|||+||||||||||||||||.|...... ...-.+.+++.+++.++.
T Consensus 40 ~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~ 119 (337)
T cd01373 40 PRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFS 119 (337)
T ss_pred CcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHH
Confidence 6889988888766654 789999999999999999999999999999754432 234578999999998877
Q ss_pred ccc
Q psy5719 198 MDE 200 (378)
Q Consensus 198 ~~~ 200 (378)
...
T Consensus 120 ~i~ 122 (337)
T cd01373 120 LIQ 122 (337)
T ss_pred HHH
Confidence 533
No 35
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=98.47 E-value=1.4e-07 Score=92.97 Aligned_cols=73 Identities=29% Similarity=0.478 Sum_probs=59.0
Q ss_pred cCCCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhh
Q psy5719 124 QTSSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNH 194 (378)
Q Consensus 124 ~tgSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~ 194 (378)
..+..++|++.+.+++..++ |+|+.+++|+|+|||||||||||||||| ....--|..+..+++.
T Consensus 49 ~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm-------~G~~~~~Giipr~~~~ 121 (338)
T cd01370 49 RRNKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTM-------LGTDSDPGLMVLTMKD 121 (338)
T ss_pred ccCCceEEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEE-------cCCCCCCchHHHHHHH
Confidence 34456899998888766544 8899999999999999999999999999 3444578999999999
Q ss_pred hhcccccce
Q psy5719 195 IYQMDENLE 203 (378)
Q Consensus 195 l~~~~~~~~ 203 (378)
++.......
T Consensus 122 LF~~i~~~~ 130 (338)
T cd01370 122 LFDKIEERK 130 (338)
T ss_pred HHHhhhhcc
Confidence 987544433
No 36
>KOG0241|consensus
Probab=98.37 E-value=2.1e-07 Score=98.22 Aligned_cols=64 Identities=31% Similarity=0.537 Sum_probs=54.1
Q ss_pred CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeee
Q psy5719 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEI 213 (378)
Q Consensus 143 ~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EI 213 (378)
+||+..+++|||.|||+|||||+||+|||+|. .--|.++++|.+.++.......-.-..--+||
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt-------~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeV 146 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGT-------AEQPGIIPRLCESLFERIDKESNPSQTFKVEV 146 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeecc-------CCCCCchhHHHHHHHHHHHhccCCCceEEEEE
Confidence 48999999999999999999999999999987 88999999999999987555443333444666
No 37
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=98.28 E-value=4.2e-07 Score=89.85 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=52.0
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
.-++|++...+++..++ |+|+.+++|+|++|++|||||||||||| ....--|..+..+++.++.
T Consensus 53 ~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm-------~G~~~~~Gli~r~~~~lF~ 125 (345)
T cd01368 53 KETKFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTM-------QGSPGDGGILPRSLDVIFN 125 (345)
T ss_pred CceEeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEe-------cCCCCCCchHHHHHHHHHH
Confidence 46788888877665543 8899999999999999999999999999 3333467788888888765
No 38
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=98.27 E-value=3.9e-07 Score=89.21 Aligned_cols=63 Identities=33% Similarity=0.420 Sum_probs=53.1
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
.++|+..+.+++..++ ++|..+++|+|+||++|||||||||||| ....--|..+..+++.+..
T Consensus 50 ~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm-------~G~~~~~Glipr~~~~lf~ 121 (322)
T cd01367 50 KHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTM-------LGDENQEGLYALAARDIFR 121 (322)
T ss_pred CceEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEe-------cCcCCcCccHHHHHHHHHH
Confidence 5889998887766554 8899999999999999999999999999 3444467888998888876
No 39
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=98.27 E-value=5.9e-07 Score=88.32 Aligned_cols=74 Identities=39% Similarity=0.609 Sum_probs=59.9
Q ss_pred CCCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhh
Q psy5719 125 TSSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI 195 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l 195 (378)
+...|+|++...+++..++ ++|+.+++|+++||++|||+||||||||.| +....-.|+.+..+++.+
T Consensus 44 ~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G----~~~~~~~~Glipr~~~~L 119 (333)
T cd01371 44 KEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEG----VREPPELRGIIPNSFAHI 119 (333)
T ss_pred cCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecC----CCCcccccchHHHHHHHH
Confidence 4678899998887665543 889999999999999999999999999976 333455889999999998
Q ss_pred hcccccc
Q psy5719 196 YQMDENL 202 (378)
Q Consensus 196 ~~~~~~~ 202 (378)
.......
T Consensus 120 f~~~~~~ 126 (333)
T cd01371 120 FGHIAKA 126 (333)
T ss_pred HHHHhhc
Confidence 8754433
No 40
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=98.20 E-value=7.6e-07 Score=88.34 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=54.9
Q ss_pred CCCCcceEecccCCCC-------CC---------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhH
Q psy5719 125 TSSGKTHTMEGVMGDP-------NK---------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIV 188 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~-------~~---------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~ 188 (378)
....|+|++.+.+++. .+ .++|+.+++|+|++|++||||||||||||. ...--+..+
T Consensus 44 ~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~-------G~~~~~Gli 116 (356)
T cd01365 44 RKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMM-------GYKEEKGII 116 (356)
T ss_pred ccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEec-------CCCCCCchH
Confidence 4467888888776543 22 278999999999999999999999999993 333367889
Q ss_pred HHHHhhhhccccc
Q psy5719 189 NDIFNHIYQMDEN 201 (378)
Q Consensus 189 ~~lf~~l~~~~~~ 201 (378)
..+++.++.....
T Consensus 117 ~r~~~~Lf~~~~~ 129 (356)
T cd01365 117 PRLCEELFQRIES 129 (356)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998875443
No 41
>KOG0242|consensus
Probab=98.18 E-value=7.9e-07 Score=94.50 Aligned_cols=55 Identities=38% Similarity=0.576 Sum_probs=46.1
Q ss_pred CCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccce
Q psy5719 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203 (378)
Q Consensus 142 ~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~ 203 (378)
..||++++|.|||++|||||||||||||||.|. ---|+++......|+..-....
T Consensus 75 tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~-------~~~PGii~la~~dif~~I~~~~ 129 (675)
T KOG0242|consen 75 TKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGS-------EDDPGIIPLAMKDIFEKIDKSG 129 (675)
T ss_pred cHHHHHHHhcCcccceeeecCCCCCCceEEecc-------CCCCCeeehHHHHHHHHHHhcC
Confidence 459999999999999999999999999999876 6678888888887776544333
No 42
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=98.18 E-value=1.6e-06 Score=85.41 Aligned_cols=75 Identities=29% Similarity=0.455 Sum_probs=60.8
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
.++|++.+.+++..++ |+|+.+++|+++||++||||||||||||.|..... ...-.+..+..+++.++..
T Consensus 39 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~-~~~~~~Giipr~~~~LF~~ 117 (341)
T cd01372 39 DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTAS-EDEEEVGIIPRAIQHIFKK 117 (341)
T ss_pred CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccc-cccccCChHHHHHHHHHHH
Confidence 7899998888765544 88999999999999999999999999998864332 3345788999999999886
Q ss_pred cccce
Q psy5719 199 DENLE 203 (378)
Q Consensus 199 ~~~~~ 203 (378)
.....
T Consensus 118 ~~~~~ 122 (341)
T cd01372 118 IDEKK 122 (341)
T ss_pred HHhcc
Confidence 54443
No 43
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=98.17 E-value=1.2e-06 Score=86.72 Aligned_cols=72 Identities=42% Similarity=0.584 Sum_probs=55.7
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCC----CCCchhhhHHHHH
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN----KQGIIPRIVNDIF 192 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~----~~Giipr~~~~lf 192 (378)
...++|++...+.+..++ |+++.+++|++++|++||||||||||||.|...... ...--+..+..++
T Consensus 45 ~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~ 124 (352)
T cd01364 45 QSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRAL 124 (352)
T ss_pred ccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHH
Confidence 456788888877655543 889999999999999999999999999999754432 1123467788888
Q ss_pred hhhhc
Q psy5719 193 NHIYQ 197 (378)
Q Consensus 193 ~~l~~ 197 (378)
+.+..
T Consensus 125 ~~Lf~ 129 (352)
T cd01364 125 YQLFE 129 (352)
T ss_pred HHHHH
Confidence 87765
No 44
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=98.15 E-value=1.1e-06 Score=85.97 Aligned_cols=65 Identities=34% Similarity=0.587 Sum_probs=52.6
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
+..++|++...+++...+ |+++.+++|+|+||++|||||||||||| ....--|..+..+++.+.
T Consensus 44 ~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm-------~G~~~~~Glipr~~~~Lf 116 (319)
T cd01376 44 GETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTM-------LGDPNEPGLIPRTLSDLL 116 (319)
T ss_pred CCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEE-------eCCcCccchHHHHHHHHH
Confidence 346788888877665544 8899999999999999999999999999 333346788888888887
Q ss_pred c
Q psy5719 197 Q 197 (378)
Q Consensus 197 ~ 197 (378)
.
T Consensus 117 ~ 117 (319)
T cd01376 117 R 117 (319)
T ss_pred H
Confidence 5
No 45
>KOG0240|consensus
Probab=98.13 E-value=2.2e-06 Score=86.90 Aligned_cols=77 Identities=40% Similarity=0.568 Sum_probs=57.3
Q ss_pred cceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 129 KTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 129 KTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
|||.+.-.+.+...| +|+..+|.|||++|||||||++||||||.|. ....--..+++.|.+.|+..-
T Consensus 49 ~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~----~~d~~~~GIipRi~~diF~~I 124 (607)
T KOG0240|consen 49 KTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGI----GHDPEEMGIIPRILNDIFDHI 124 (607)
T ss_pred ccceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeeccc----CCChhhcCcHHHHHHHHHHHH
Confidence 888888777766665 8899999999999999999999999999765 111113378889988887754
Q ss_pred ccceeEEEEe
Q psy5719 200 ENLEFIIKVS 209 (378)
Q Consensus 200 ~~~~~~V~vS 209 (378)
....-...++
T Consensus 125 ys~~~n~efh 134 (607)
T KOG0240|consen 125 YSMEENLEFH 134 (607)
T ss_pred hcCcccceEE
Confidence 4333333333
No 46
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=98.11 E-value=1.7e-06 Score=85.08 Aligned_cols=70 Identities=31% Similarity=0.538 Sum_probs=55.3
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
..++|++.+.+++ .++ ++++.+++|+|++|++||||||||||||.| .. ...--|..+..+++.+..
T Consensus 46 ~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G---~~-~~~~~~Glipr~~~~lf~ 120 (334)
T cd01375 46 EDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG---GT-ESYKDRGLIPRALEQVFR 120 (334)
T ss_pred CceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccC---CC-CcccCCchHHHHHHHHHH
Confidence 5677888888777 553 789999999999999999999999999975 22 222357888999888877
Q ss_pred cccc
Q psy5719 198 MDEN 201 (378)
Q Consensus 198 ~~~~ 201 (378)
....
T Consensus 121 ~~~~ 124 (334)
T cd01375 121 EVAM 124 (334)
T ss_pred HHHh
Confidence 5443
No 47
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=98.04 E-value=4.9e-06 Score=81.51 Aligned_cols=73 Identities=42% Similarity=0.642 Sum_probs=58.6
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
...++|++...+++..++ ++++.+++|++++|++||||||||||||.|. ....-.+..+..+++.+.
T Consensus 40 ~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~----~~~~~~~Giipr~~~~Lf 115 (325)
T cd01369 40 DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGP----PGDPELKGIIPRIVHDIF 115 (325)
T ss_pred CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCC----CCccccCChHHHHHHHHH
Confidence 457899998887765543 8899999999999999999999999999875 322347889999999888
Q ss_pred cccccc
Q psy5719 197 QMDENL 202 (378)
Q Consensus 197 ~~~~~~ 202 (378)
......
T Consensus 116 ~~~~~~ 121 (325)
T cd01369 116 EHISSM 121 (325)
T ss_pred HHHhhc
Confidence 754433
No 48
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=98.04 E-value=2.7e-06 Score=83.20 Aligned_cols=69 Identities=41% Similarity=0.656 Sum_probs=55.8
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
..+++|++...+++..++ |+|+.+++|+|++|++|||+|||||||| ....--|..+..+++.++
T Consensus 37 ~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~-------~G~~~~~Gli~r~~~~lf 109 (321)
T cd01374 37 TPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTM-------SGDEQEPGIIPLAVRDIF 109 (321)
T ss_pred CCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceec-------cCCCCCCchHHHHHHHHH
Confidence 567899988877765543 8899999999999999999999999999 333356788999998887
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 110 ~~~~~ 114 (321)
T cd01374 110 QRIQD 114 (321)
T ss_pred HHHhc
Confidence 75443
No 49
>KOG0247|consensus
Probab=97.95 E-value=5.1e-06 Score=86.49 Aligned_cols=51 Identities=45% Similarity=0.758 Sum_probs=46.4
Q ss_pred CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 144 gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
|+|-..|-|-|.-+|.||.|||||||||.|+...+ ||+||+++.||..+..
T Consensus 105 plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~---GIlPR~Ld~iF~siq~ 155 (809)
T KOG0247|consen 105 PLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRP---GILPRALDVIFNSIQG 155 (809)
T ss_pred HHHHHHHcccceeEEEeeccCCCceEEeecCCCCC---CchHHHHHHHHHHhhc
Confidence 77888889999999999999999999999986555 9999999999999976
No 50
>KOG0245|consensus
Probab=97.95 E-value=5.5e-06 Score=88.79 Aligned_cols=88 Identities=27% Similarity=0.363 Sum_probs=58.7
Q ss_pred CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccc-cceeEEEEeeeee-eccccccc
Q psy5719 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NLEFIIKVSYFEI-YMDKIRDL 221 (378)
Q Consensus 144 gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~-~~~~~V~vS~~EI-YnE~i~DL 221 (378)
++|.++++|||+||||||||||||+||| ..- ..---|.+++.+++.++.... +..-.+..+ +|+ |.|.+-.
T Consensus 78 ~mL~~AfEGYN~ClFAYGQTGSGKSYTM----MG~-~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~-VevSymEIYcE- 150 (1221)
T KOG0245|consen 78 EMLDHAFEGYNVCLFAYGQTGSGKSYTM----MGF-QEPDEPGIIPRLCEELFSRIADNQSQQMSYS-VEVSYMEIYCE- 150 (1221)
T ss_pred HHHHHHhcccceEEEEeccCCCCcceee----ecc-CCCCCCCchhHHHHHHHHHHhhcccccceEE-EEEeehhHHHH-
Confidence 7899999999999999999999999999 111 111458999999999988644 444444444 344 5544332
Q ss_pred cccccCCCcccccCCCCcEE
Q psy5719 222 LDVSKVNLSVHEDKNRVPFV 241 (378)
Q Consensus 222 L~~~~~~L~i~ed~~~~~~v 241 (378)
.-.+|...-...+++.|
T Consensus 151 ---rVrDLL~~p~~kg~LRV 167 (1221)
T KOG0245|consen 151 ---RVRDLLNAPKSKGGLRV 167 (1221)
T ss_pred ---HHHHHhhCCCCCCCcee
Confidence 33344443444555554
No 51
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=97.92 E-value=2.7e-06 Score=83.55 Aligned_cols=71 Identities=34% Similarity=0.536 Sum_probs=56.0
Q ss_pred cCCCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCC--CchhhhHHHHH
Q psy5719 124 QTSSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ--GIIPRIVNDIF 192 (378)
Q Consensus 124 ~tgSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~--Giipr~~~~lf 192 (378)
.....++|++...+++..++ ++|+.+|+|+|+||++||++|||||||| ... .--|..+..++
T Consensus 36 ~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm-------~G~~~~~~~Gli~~~~ 108 (335)
T PF00225_consen 36 NSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTM-------FGSNDPSEPGLIPRAL 108 (335)
T ss_dssp ETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHH-------TBSTSTTTBSHHHHHH
T ss_pred CCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccc-------cccccccccchhhhHH
Confidence 34556788888777655543 8899999999999999999999999999 332 55889999999
Q ss_pred hhhhccccc
Q psy5719 193 NHIYQMDEN 201 (378)
Q Consensus 193 ~~l~~~~~~ 201 (378)
+.++.....
T Consensus 109 ~~lf~~~~~ 117 (335)
T PF00225_consen 109 RDLFSQIEE 117 (335)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhcc
Confidence 999875443
No 52
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=97.87 E-value=9.6e-06 Score=79.59 Aligned_cols=77 Identities=32% Similarity=0.466 Sum_probs=59.7
Q ss_pred ceeeeccCCCCcceEecccCCCCCC--------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHH
Q psy5719 118 TIFAYGQTSSGKTHTMEGVMGDPNK--------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVN 189 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G~~~~~~~--------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~ 189 (378)
+|......+..++|++...+.+..+ +|+|+.+++|+++||++||++|+|||||| ....--|..+.
T Consensus 34 ~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl-------~G~~~~~Gli~ 106 (329)
T cd01366 34 TIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTM-------EGPPENPGIIP 106 (329)
T ss_pred EEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCcEEe-------cCCCCCCCcHH
Confidence 3333444577889999888765544 38899999999999999999999999999 33334688999
Q ss_pred HHHhhhhccccc
Q psy5719 190 DIFNHIYQMDEN 201 (378)
Q Consensus 190 ~lf~~l~~~~~~ 201 (378)
.+++.++.....
T Consensus 107 r~~~~lf~~~~~ 118 (329)
T cd01366 107 RALEQLFNTAEE 118 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999988775443
No 53
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=97.80 E-value=6.4e-06 Score=74.22 Aligned_cols=28 Identities=61% Similarity=0.884 Sum_probs=26.9
Q ss_pred CchhhhhhcccCccccccCCCCCCcccc
Q psy5719 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTM 171 (378)
Q Consensus 144 gil~r~l~g~~~~i~aygqtgsgKt~tm 171 (378)
++++.+++|+|+||++|||+|+||||||
T Consensus 14 ~~v~~~~~G~n~~i~~yG~tGsGKT~Tm 41 (186)
T cd01363 14 PLLQSALDGYNVCIFAYGQTGSGKTYTM 41 (186)
T ss_pred HHHHHHhCCcceeEEEECCCCCcceEec
Confidence 6899999999999999999999999998
No 54
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=97.69 E-value=2.3e-05 Score=76.77 Aligned_cols=69 Identities=38% Similarity=0.589 Sum_probs=55.5
Q ss_pred CCCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhh
Q psy5719 125 TSSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI 195 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l 195 (378)
....++|++...+++..++ ++++.+++|++++|++||++|+|||||| ....--|..+..+++.+
T Consensus 41 ~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl-------~G~~~~~Gli~~~~~~L 113 (328)
T cd00106 41 KAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTM-------FGSPKDPGIIPRALEDL 113 (328)
T ss_pred CcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEe-------cCCCCCCchHHHHHHHH
Confidence 4567889988887664443 8899999999999999999999999999 33335678899999888
Q ss_pred hcccc
Q psy5719 196 YQMDE 200 (378)
Q Consensus 196 ~~~~~ 200 (378)
.....
T Consensus 114 f~~~~ 118 (328)
T cd00106 114 FNLID 118 (328)
T ss_pred HHHHh
Confidence 77533
No 55
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=97.62 E-value=3.3e-05 Score=81.14 Aligned_cols=63 Identities=38% Similarity=0.567 Sum_probs=48.8
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
=+||+..+.+.....+ ++++.++.|||+++|||||||+|||||| ...-.-|..++.....++.
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~-------~G~~~~~Gii~~~l~~lf~ 126 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTM-------SGTEEEPGIIPLSLKELFS 126 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEe-------ecCccccchHHHHHHHHHH
Confidence 4578888887766644 8999999999999999999999999999 2222246677776666655
No 56
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=97.62 E-value=4.3e-05 Score=75.08 Aligned_cols=67 Identities=37% Similarity=0.590 Sum_probs=52.4
Q ss_pred CCcceEecccCCCCCC---------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 127 SGKTHTMEGVMGDPNK---------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~---------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
..++|+....+....+ +++++.+++|++++|++||++|||||||| ...+--|..+..+++.+..
T Consensus 44 ~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl-------~G~~~~~Gli~~~~~~Lf~ 116 (335)
T smart00129 44 EEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTM-------SGTPDSPGIIPRALKDLFE 116 (335)
T ss_pred CCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEe-------cCCCCCCCHHHHHHHHHHH
Confidence 3467777766554443 38899999999999999999999999999 3444567888999888877
Q ss_pred ccc
Q psy5719 198 MDE 200 (378)
Q Consensus 198 ~~~ 200 (378)
...
T Consensus 117 ~~~ 119 (335)
T smart00129 117 KID 119 (335)
T ss_pred Hhh
Confidence 543
No 57
>KOG0246|consensus
Probab=97.41 E-value=6.2e-05 Score=76.61 Aligned_cols=35 Identities=43% Similarity=0.627 Sum_probs=31.9
Q ss_pred CCchhhhhhcccCccccccCCCCCCcccccccCCC
Q psy5719 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGD 177 (378)
Q Consensus 143 ~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~ 177 (378)
.|||+.++++--.++||||||||||||||.|.+..
T Consensus 281 ~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsg 315 (676)
T KOG0246|consen 281 KPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSG 315 (676)
T ss_pred hHHHHHHHhCCceeeeeeccCCCCceeecccccCc
Confidence 58999999999999999999999999999887543
No 58
>KOG0244|consensus
Probab=95.88 E-value=0.0034 Score=67.67 Aligned_cols=40 Identities=25% Similarity=0.226 Sum_probs=18.8
Q ss_pred hccchhhHHHHhhhhhhhhhhccccchH---HHHHHhhcccch
Q psy5719 275 RLLLSHHEARMKSLQESMKEAENKKRSL---EECVDALREECA 314 (378)
Q Consensus 275 ~lnrSH~if~i~~~~~~l~e~~~in~Sl---l~lVDLAGSEra 314 (378)
|+++|++.-++...+++++|+.+||.++ .++|-.+|.+..
T Consensus 221 DLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk 263 (913)
T KOG0244|consen 221 DLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKK 263 (913)
T ss_pred eccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhc
Confidence 4444444444444455555555555443 344444444433
No 59
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.21 E-value=0.023 Score=58.26 Aligned_cols=98 Identities=22% Similarity=0.379 Sum_probs=59.2
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccccc
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYG 161 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ayg 161 (378)
+.|....-|.|.-+|.+- +..+++++-.|...- .-.|.|||||||||--.-..-+.|.++ .|
T Consensus 3 ~~F~l~s~f~PaGDQP~A----I~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV-----------~A-- 64 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEA----IAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLV-----------LA-- 64 (663)
T ss_pred CceEeccCCCCCCCcHHH----HHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEE-----------Ee--
Confidence 467778889999999754 455666666665433 346999999999994321111000000 00
Q ss_pred CCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccc
Q psy5719 162 QTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKI 218 (378)
Q Consensus 162 qtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i 218 (378)
..| -....||.+.++..++....-.|||+--|.-.-
T Consensus 65 ---hNK------------------TLAaQLy~Efk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 65 ---HNK------------------TLAAQLYSEFKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred ---cch------------------hHHHHHHHHHHHhCcCcceEEEeeeccccCccc
Confidence 011 134567777777666666667788877775543
No 60
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.93 E-value=0.04 Score=50.91 Aligned_cols=51 Identities=33% Similarity=0.573 Sum_probs=30.4
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..|+||.-+. ...++..|..+ ..+.+.--..+| .++-||.+|+||||-+.+
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~~~-~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~A 53 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYAAA-KAIAENPGERYN-PLFLYGPSGLGKTHLLQA 53 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHHH-HHHHHSTTTSSS-EEEEEESTTSSHHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHHHH-HHHHhcCCCCCC-ceEEECCCCCCHHHHHHH
Confidence 4699999554 34466666543 444443111233 478899999999997753
No 61
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.21 E-value=0.04 Score=53.03 Aligned_cols=30 Identities=33% Similarity=0.490 Sum_probs=26.8
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+.|++..+.+-.++.|+.-|+||||||.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 456777788899999999999999999998
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=92.58 E-value=0.13 Score=47.71 Aligned_cols=49 Identities=18% Similarity=0.234 Sum_probs=32.5
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...++||..+.... ... +..+.+.+-.++|..++-||.+|+||||-+..
T Consensus 10 ~~~~~fd~f~~~~~-~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a 58 (229)
T PRK06893 10 IDDETLDNFYADNN-LLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKA 58 (229)
T ss_pred CCcccccccccCCh-HHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHHH
Confidence 45688999886442 221 22222333356777889999999999988754
No 63
>PRK08116 hypothetical protein; Validated
Probab=90.84 E-value=0.38 Score=45.88 Aligned_cols=51 Identities=22% Similarity=0.292 Sum_probs=35.1
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhc--cCCcceeeeccCCCCcceEec
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA--GYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~--G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..++||.-. .+..+...|.. +...++.+.. ..+..++-||.+|+||||.+.
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred Hhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 456787633 45566666655 4666666654 345568999999999998874
No 64
>PRK06620 hypothetical protein; Validated
Probab=89.71 E-value=0.28 Score=45.12 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=34.0
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCC---cceeeeccCCCCcceEecc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN---GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n---~~i~ayG~tgSGKTyTm~G 135 (378)
....|+||..+.. .+++..|..+ ..+.+. -|+| -.++-||++||||||.+..
T Consensus 9 ~~~~~tfd~Fvvg-~~N~~a~~~~-~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 9 TSSKYHPDEFIVS-SSNDQAYNII-KNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCCchhhEec-ccHHHHHHHH-HHHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 3457899996653 4455577664 333321 1343 3589999999999998853
No 65
>PRK12377 putative replication protein; Provisional
Probab=89.56 E-value=0.38 Score=45.42 Aligned_cols=50 Identities=24% Similarity=0.352 Sum_probs=34.9
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.+||.-......|+.++.. +..+++.+..+. ..++-+|++|+||||.+..
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 3677644445567667765 466677766543 4688899999999998753
No 66
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=89.32 E-value=0.41 Score=47.80 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=31.4
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEec
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..|..+.+.+.-...++-++.+. ..+...+ .+....++-||++|+|||+++.
T Consensus 21 ~~l~~~~~P~~l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 21 EVLEPDYVPENLPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred hhCCCCCcCCCCCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHHH
Confidence 34444444444444555555543 3333444 3455678999999999998874
No 67
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.28 E-value=0.36 Score=51.23 Aligned_cols=52 Identities=25% Similarity=0.421 Sum_probs=34.1
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...|+||.-+-.. ..+..|.. +..++...-..+|. ||-||.+|+||||-+..
T Consensus 282 ~~~~TFDnFvvG~-sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGA-SNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCC-ccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 4569999854333 34445543 34455443345675 89999999999998854
No 68
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.10 E-value=0.35 Score=47.67 Aligned_cols=50 Identities=26% Similarity=0.355 Sum_probs=31.6
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhc-cCCcceeeeccCCCCcceEec
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLA-GYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~-G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.-|++.+.=...++-++.+.. .+..++. +....++-||++|+|||+++.
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~~ 58 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVTK 58 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 3344444444455555555433 3444444 455689999999999998874
No 69
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=88.70 E-value=0.18 Score=51.75 Aligned_cols=33 Identities=30% Similarity=0.346 Sum_probs=27.3
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEeccc
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
....+..++..-++.|+.-|+||||||.||+..
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~ 278 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYAA 278 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 345566778888999999999999999999753
No 70
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=88.50 E-value=0.28 Score=50.31 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=31.7
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...|+||.-.. ...+...|..+ ..+.+.--..+| .++-||.+|+||||.+..
T Consensus 116 ~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~a 167 (450)
T PRK00149 116 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 167 (450)
T ss_pred CCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHHH
Confidence 35688888332 23555566553 333333212344 478899999999998854
No 71
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.96 E-value=0.41 Score=49.00 Aligned_cols=51 Identities=25% Similarity=0.472 Sum_probs=33.5
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...|+||.-+. ..+++..|..+ ..+... -..+|. ++-||.+|+||||-+..
T Consensus 99 ~~~~tFdnFv~-g~~n~~a~~~~-~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~a 149 (440)
T PRK14088 99 NPDYTFENFVV-GPGNSFAYHAA-LEVAKN-PGRYNP-LFIYGGVGLGKTHLLQS 149 (440)
T ss_pred CCCCccccccc-CCchHHHHHHH-HHHHhC-cCCCCe-EEEEcCCCCcHHHHHHH
Confidence 45699998553 34555666654 333332 122564 99999999999998854
No 72
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=87.72 E-value=0.35 Score=42.02 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHhhcc-CCcceeeeccCCCCcceEecc
Q psy5719 96 QEKVYDEAAKSIVSDVLAG-YNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 96 Q~~vf~~~~~~lv~~~l~G-~n~~i~ayG~tgSGKTyTm~G 135 (378)
|.++...+ ++.+-.. ....++..+.||||||++|..
T Consensus 8 Q~~ai~~i----~~~~~~~~~~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 8 QQEAIARI----INSLENKKEERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp HHHHHHHH----HHHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred HHHHHHHH----HHHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence 55444443 3333333 456677788999999999974
No 73
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=87.67 E-value=2.2 Score=40.41 Aligned_cols=50 Identities=22% Similarity=0.175 Sum_probs=33.8
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+.|.|..+=.+...+..++... ..++..+-.|.| ++-||++|+||||-..
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~-~~~~~~~~~~~n--l~l~G~~G~GKThLa~ 123 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDL-ASLVEFFERGEN--LVLLGPPGVGKTHLAI 123 (254)
T ss_pred CCcccccccCCcchhHHHHHHH-HHHHHHhccCCc--EEEECCCCCcHHHHHH
Confidence 5555555444556777888774 555655554444 6779999999998774
No 74
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.64 E-value=0.45 Score=47.98 Aligned_cols=52 Identities=25% Similarity=0.425 Sum_probs=31.3
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...|+||.-.. ...+...|..+ ..+...--..+| .++-||.+|+||||.+..
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~a 155 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLHA 155 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHHH
Confidence 35788888332 34555566543 333333111233 478899999999998853
No 75
>PRK05642 DNA replication initiation factor; Validated
Probab=87.44 E-value=0.58 Score=43.61 Aligned_cols=48 Identities=17% Similarity=0.383 Sum_probs=29.2
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhc---cC-CcceeeeccCCCCcceEec
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA---GY-NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~---G~-n~~i~ayG~tgSGKTyTm~ 134 (378)
-...|+||.-+.. . +...+ ..+....+ +. ...++-||.+|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~-~-~~~a~-----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPG-A-NAAAL-----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcC-C-hHHHH-----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 3456899986633 2 33333 33333322 21 2467899999999998874
No 76
>PRK09087 hypothetical protein; Validated
Probab=87.24 E-value=0.48 Score=43.99 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=32.4
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.....|+||.-+..+ .+..+|..+ .....-.+..++-||.+||||||-+.
T Consensus 13 ~~~~~~~~~~Fi~~~-~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 13 SHDPAYGRDDLLVTE-SNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCCChhceeecC-chHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence 334568899866533 344477643 22222235558999999999998875
No 77
>PRK07952 DNA replication protein DnaC; Validated
Probab=87.01 E-value=0.61 Score=43.93 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=33.3
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..+||.-......|..++..+ ...++.+..+. ..++-+|.+|+||||.+..
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 456776433345566677664 44555554443 3688999999999988753
No 78
>PRK06835 DNA replication protein DnaC; Validated
Probab=86.64 E-value=0.4 Score=47.16 Aligned_cols=36 Identities=22% Similarity=0.428 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 98 KVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.+++. +...++.+-.+. -.++-||++|+||||.+.+
T Consensus 167 ~~~~~-~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~a 202 (329)
T PRK06835 167 KILEK-CKNFIENFDKNN-ENLLFYGNTGTGKTFLSNC 202 (329)
T ss_pred HHHHH-HHHHHHHHhccC-CcEEEECCCCCcHHHHHHH
Confidence 34443 355677666544 5699999999999997753
No 79
>PRK06526 transposase; Provisional
Probab=86.18 E-value=0.51 Score=44.66 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=28.0
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.|.|+ +.+.-++..+..-.....++ .+.| |+-+|++|+||||...+
T Consensus 72 ~fd~~--~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 72 EFDFD--HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred hccCc--cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHHH
Confidence 34444 44555555554433333332 3444 78999999999998854
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.08 E-value=0.81 Score=42.61 Aligned_cols=50 Identities=10% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
-+..|+||.-+. . .+...+..+ ..+.. ......++-||++|+||||.+..
T Consensus 15 ~~~~~~fd~f~~-~-~n~~a~~~l-~~~~~---~~~~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 15 LPDDETFASFYP-G-DNDSLLAAL-QNALR---QEHSGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCCcCCcccccc-C-ccHHHHHHH-HHHHh---CCCCCeEEEECCCCCCHHHHHHH
Confidence 345678887554 3 566666553 33322 22334789999999999998853
No 81
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=85.77 E-value=1.6 Score=43.36 Aligned_cols=90 Identities=17% Similarity=0.281 Sum_probs=51.8
Q ss_pred eeEec-c-cccCCCCChHHHHHHHHHHHHHHhhcc---CCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCc
Q psy5719 82 KFYLF-D-KVFKPNATQEKVYDEAAKSIVSDVLAG---YNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGT 156 (378)
Q Consensus 82 ~~F~F-D-~Vf~~~~~Q~~vf~~~~~~lv~~~l~G---~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~ 156 (378)
+.|.| + .||+.+ +.-+.++.- +.....| .+-.+.-.|++|||||.... -+-..
T Consensus 44 ~~y~~F~~~~~G~~----~~i~~lv~~-l~~~a~g~~~~r~il~L~GPPGsGKStla~-----------------~La~~ 101 (361)
T smart00763 44 KRYRFFDHDFFGME----EAIERFVNY-FKSAAQGLEERKQILYLLGPVGGGKSSLVE-----------------CLKRG 101 (361)
T ss_pred eeccccchhccCcH----HHHHHHHHH-HHHHHhcCCCCCcEEEEECCCCCCHHHHHH-----------------HHHHH
Confidence 45553 4 677744 444443332 2222333 45667888999999993321 11122
Q ss_pred cccccCCCCCCcccccc----cCCCCCCCCchhhhHHHHHh
Q psy5719 157 IFAYGQTSSGKTHTMEG----VMGDPNKQGIIPRIVNDIFN 193 (378)
Q Consensus 157 i~aygqtgsgKt~tm~g----~~~~~~~~Giipr~~~~lf~ 193 (378)
+..|..|-.|.-|++.+ .....+..|++|......|.
T Consensus 102 l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~ 142 (361)
T smart00763 102 LEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLE 142 (361)
T ss_pred HhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHH
Confidence 23466667777777766 33334456888888877774
No 82
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.64 E-value=0.52 Score=48.41 Aligned_cols=50 Identities=22% Similarity=0.467 Sum_probs=31.6
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.|+||.-... .+++..|.. +..+...--..+| .++-||.+|+||||.+..
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 5899985543 345556644 3444332111234 478999999999998854
No 83
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=0.66 Score=46.36 Aligned_cols=27 Identities=37% Similarity=0.623 Sum_probs=19.9
Q ss_pred HHHhhccCC-cceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYN-GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n-~~i~ayG~tgSGKTyTm~ 134 (378)
+..++.|.- ..++.||.||+|||.|+.
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATVK 60 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHHH
Confidence 444555444 449999999999998874
No 84
>PRK08181 transposase; Validated
Probab=85.08 E-value=0.99 Score=43.15 Aligned_cols=45 Identities=29% Similarity=0.417 Sum_probs=26.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEecc
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
||.-+.+..++..+..-.. .++++ .|.| |+-||++|+||||-..+
T Consensus 80 fd~~~~~~~~~~~~~~L~~---~~~~~~~~~n--lll~Gp~GtGKTHLa~A 125 (269)
T PRK08181 80 FDFEAVPMVSKAQVMAIAA---GDSWLAKGAN--LLLFGPPGGGKSHLAAA 125 (269)
T ss_pred CCccCCCCCCHHHHHHHHH---HHHHHhcCce--EEEEecCCCcHHHHHHH
Confidence 3433455555544443321 22222 4555 88999999999988754
No 85
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=84.65 E-value=0.67 Score=37.96 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=17.8
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+.......++-+|.+|+|||+.+
T Consensus 12 ~~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 12 EALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHHhCCCCCeEEEECCCCCCHHHHH
Confidence 3333334456889999999999765
No 86
>KOG0989|consensus
Probab=84.31 E-value=0.83 Score=44.30 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=33.3
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhcc-CCcceeeeccCCCCcceEec
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAG-YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G-~n~~i~ayG~tgSGKTyTm~ 134 (378)
.-+|..=|-|-+.-+-++++.+-.++...+.+ ---..+-||+.|+|||.|+.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStal 75 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTAL 75 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence 33445555555555556666555555555554 33447889999999999873
No 87
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=84.30 E-value=0.65 Score=46.91 Aligned_cols=54 Identities=28% Similarity=0.471 Sum_probs=33.7
Q ss_pred CCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 78 ~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+-...|+||.-.. ..+++-.|... ..+...-.+.---||-||.+|+||||-|.
T Consensus 78 ~~l~~~ytFdnFv~-g~~N~~A~aa~--~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 78 SGLNPKYTFDNFVV-GPSNRLAYAAA--KAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred ccCCCCCchhheee-CCchHHHHHHH--HHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 34567899999443 44444444432 22222223334458999999999999984
No 88
>PRK08939 primosomal protein DnaI; Reviewed
Probab=84.26 E-value=0.86 Score=44.37 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=32.7
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhcc-CCcceeeeccCCCCcceEecc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAG-YNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G-~n~~i~ayG~tgSGKTyTm~G 135 (378)
.+|+.+-..+..+..++.. +...++....| ..-.++-||.+|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~-~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMA-ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHH-HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 4566543333356667664 35566655543 234589999999999998854
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=84.21 E-value=1.2 Score=40.59 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=31.6
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
...++||.... . .+..+++.. +.++ .......|+-||.+|+||||...
T Consensus 9 ~~~~~~~~~~~-~-~~~~~~~~l-~~~~---~~~~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 9 PDDPTFDNFYA-G-GNAELLAAL-RQLA---AGKGDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCchhhcCcCc-C-CcHHHHHHH-HHHH---hcCCCCeEEEECCCCCCHHHHHH
Confidence 44578887663 2 445555543 2322 24566789999999999998764
No 90
>PF13245 AAA_19: Part of AAA domain
Probab=83.08 E-value=0.53 Score=35.96 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=17.5
Q ss_pred HHhhccCCcceeeeccCCCCcceEecc
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
...+. .+..+.-.|..|||||+|+..
T Consensus 4 ~~al~-~~~~~vv~g~pGtGKT~~~~~ 29 (76)
T PF13245_consen 4 RRALA-GSPLFVVQGPPGTGKTTTLAA 29 (76)
T ss_pred HHHHh-hCCeEEEECCCCCCHHHHHHH
Confidence 33444 333444589999999999853
No 91
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=82.90 E-value=2.7 Score=44.94 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=28.7
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
-+|+.+++. ..... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiGq----s~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVGQ----ERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhceeC----cHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 456777653 33333 3445555677778889999999999765
No 92
>PRK08727 hypothetical protein; Validated
Probab=82.51 E-value=1 Score=41.86 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.0
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
-.|+-||.+|+||||-+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a 60 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALA 60 (233)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3599999999999988753
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=82.20 E-value=1.2 Score=40.89 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=30.0
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
...++||..+. ...+ .+... +..++.. ...+..++-||.+|+||||-..
T Consensus 12 ~~~~~~d~f~~-~~~~-~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 12 PPPPTFDNFVA-GENA-ELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CChhhhccccc-CCcH-HHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHHH
Confidence 34588998773 2222 33333 3333331 2345578999999999998763
No 94
>PRK10436 hypothetical protein; Provisional
Probab=82.14 E-value=0.61 Score=48.07 Aligned_cols=27 Identities=37% Similarity=0.436 Sum_probs=22.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++..-++.|+-.|+||||||.||+
T Consensus 210 l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 210 FRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 444556678899999999999999985
No 95
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=81.34 E-value=0.93 Score=43.22 Aligned_cols=34 Identities=29% Similarity=0.522 Sum_probs=27.8
Q ss_pred HHHH-HHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 100 YDEA-AKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 100 f~~~-~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|++. ..++++++---.-+.|+-.|.|||||+.||
T Consensus 110 ~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 110 FEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred HHhcCCcHHHHHhhcccCceEEEECCCCCCchhhH
Confidence 4444 567777777788889999999999999998
No 96
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.07 E-value=0.52 Score=38.18 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.7
Q ss_pred eeeeccCCCCcceEecc
Q psy5719 119 IFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~G 135 (378)
++.+|.||+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 56789999999999865
No 97
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=80.63 E-value=1.4 Score=47.54 Aligned_cols=47 Identities=30% Similarity=0.412 Sum_probs=33.4
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
|....-|.|.-.|..-++.+ ++.+-+|...- ..+|.|||||||||-.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~l----~~~~~~~~~~~-~l~Gvtgs~kt~~~a~ 48 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAKL----VEGLTDGEKHQ-TLLGVTGSGKTFTMAN 48 (655)
T ss_pred ceeccCCCCChHHHHHHHHH----HHhhhcCCCcE-EEECCCCcHHHHHHHH
Confidence 44555688889998888764 44455553222 3689999999999854
No 98
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=80.28 E-value=0.72 Score=48.76 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=23.7
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.+..++..-++.|+-.|.||||||.||..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~a 335 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLYT 335 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHHH
Confidence 34556667788999999999999999854
No 99
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=79.88 E-value=0.75 Score=38.82 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=17.3
Q ss_pred HHHHHhhccCC---cceeee-ccCCCCcceEe
Q psy5719 106 SIVSDVLAGYN---GTIFAY-GQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n---~~i~ay-G~tgSGKTyTm 133 (378)
..|.+.+...+ ..|+++ |.||+||||+-
T Consensus 39 ~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 39 NAIKGHLANPNPRKPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred HHHHHHHcCCCCCCCEEEEeecCCCCcHHHHH
Confidence 33444444322 345555 99999999863
No 100
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=79.83 E-value=0.87 Score=47.25 Aligned_cols=29 Identities=31% Similarity=0.409 Sum_probs=23.3
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.+..++..-.+.|+-.|+||||||.||..
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~a 261 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLYA 261 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHHH
Confidence 44556667778899999999999999853
No 101
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=79.40 E-value=0.57 Score=38.59 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=12.8
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+.+++.+|.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999776
No 102
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.37 E-value=1.7 Score=48.14 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=17.7
Q ss_pred cCCcceeeeccCCCCcceEecc
Q psy5719 114 GYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm~G 135 (378)
|-+.+++-||+||+|||.|+.-
T Consensus 779 gpnnvLYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 779 GSNQILYISGMPGTGKTATVYS 800 (1164)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 4455678999999999988843
No 103
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=79.13 E-value=1.2 Score=44.41 Aligned_cols=37 Identities=24% Similarity=0.420 Sum_probs=28.3
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..|+.+|+.++..+. ......+|--|..|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~----~~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIE----NEEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHH----ccCCcEEEEEcCCCCChhHHH
Confidence 4579999999865543 344456788999999999987
No 104
>PRK06921 hypothetical protein; Provisional
Probab=78.69 E-value=2 Score=40.94 Aligned_cols=36 Identities=33% Similarity=0.435 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhhc---cCCcceeeeccCCCCcceEecc
Q psy5719 99 VYDEAAKSIVSDVLA---GYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 99 vf~~~~~~lv~~~l~---G~n~~i~ayG~tgSGKTyTm~G 135 (378)
++.. +...++++-. +....++-||++|+||||.+..
T Consensus 98 ~~~~-~~~~~~~f~~~~~~~~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 98 AYEC-AVEYVKDFEKIQESRKNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred HHHH-HHHHHHHHHHhcccCCCeEEEECCCCCcHHHHHHH
Confidence 4433 3445555432 2345688999999999998753
No 105
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=78.66 E-value=0.67 Score=42.58 Aligned_cols=16 Identities=44% Similarity=0.740 Sum_probs=13.4
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
+.-.|.||||||+|+-
T Consensus 26 ~~I~G~TGsGKS~~~~ 41 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTVK 41 (229)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4567999999999983
No 106
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.55 E-value=1.9 Score=44.28 Aligned_cols=52 Identities=21% Similarity=0.365 Sum_probs=32.3
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHh--hcc--CCcceeeeccCCCCcceEecc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDV--LAG--YNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~--l~G--~n~~i~ayG~tgSGKTyTm~G 135 (378)
...|+||.-.. ..+++..|.. +..+.... ..| +| .++-||.+|+||||-+..
T Consensus 105 ~~~~tFdnFv~-g~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~A 160 (445)
T PRK12422 105 DPLMTFANFLV-TPENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQA 160 (445)
T ss_pred Cccccccceee-CCcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHHH
Confidence 46799998553 3355555544 34444322 123 34 367899999999988753
No 107
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=78.43 E-value=1 Score=44.53 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=21.1
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+..++.-..+.|+-.|+||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444454445778999999999999984
No 108
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.24 E-value=1.1 Score=40.51 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=19.2
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++...+..++-.|..||||||+|.
T Consensus 10 ~~~~l~~~~~~~~l~G~aGtGKT~~l~ 36 (196)
T PF13604_consen 10 VRAILTSGDRVSVLQGPAGTGKTTLLK 36 (196)
T ss_dssp HHHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred HHHHHhcCCeEEEEEECCCCCHHHHHH
Confidence 344555555556668999999999874
No 109
>KOG0335|consensus
Probab=77.99 E-value=1.2 Score=45.58 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=45.1
Q ss_pred hhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHH
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVND 190 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~ 190 (378)
+.+|.+ ++|.+|||||||+-... |++...++.-......++... ....+|.-.-+.
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFLi--------Pii~~~~~~~~~~~~~~~~~~--------------~P~~lIlapTRe 163 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFLI--------PIISYLLDEGPEDRGESGGGV--------------YPRALILAPTRE 163 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHHH--------HHHHHHHhcCcccCcccCCCC--------------CCceEEEeCcHH
Confidence 445554 49999999999988765 344444432221111111110 111233333445
Q ss_pred HHhhhhcccccceeEEEEeeeeeecc
Q psy5719 191 IFNHIYQMDENLEFIIKVSYFEIYMD 216 (378)
Q Consensus 191 lf~~l~~~~~~~~~~V~vS~~EIYnE 216 (378)
|-.++........|..++-.+.+|+.
T Consensus 164 L~~Qi~nea~k~~~~s~~~~~~~ygg 189 (482)
T KOG0335|consen 164 LVDQIYNEARKFSYLSGMKSVVVYGG 189 (482)
T ss_pred HhhHHHHHHHhhcccccceeeeeeCC
Confidence 55555544456677778888888976
No 110
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=77.92 E-value=1.5 Score=39.06 Aligned_cols=19 Identities=32% Similarity=0.587 Sum_probs=15.4
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
-.++-+|++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 4488999999999988753
No 111
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=77.65 E-value=1.2 Score=44.69 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=17.0
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++.|+-.|+||||||.||.
T Consensus 148 ~~GlilI~G~TGSGKTT~l~ 167 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAA 167 (372)
T ss_pred cCCEEEEECCCCCCHHHHHH
Confidence 45678889999999998884
No 112
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=77.63 E-value=0.97 Score=42.74 Aligned_cols=19 Identities=42% Similarity=0.642 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
.+.|+--|.||||||.+|.
T Consensus 127 ~~~ili~G~tGSGKTT~l~ 145 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLN 145 (270)
T ss_dssp TEEEEEEESTTSSHHHHHH
T ss_pred ceEEEEECCCccccchHHH
Confidence 5667888999999998873
No 113
>PF12846 AAA_10: AAA-like domain
Probab=77.27 E-value=0.8 Score=43.22 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=15.9
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4557889999999998885
No 114
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=77.18 E-value=1.7 Score=37.32 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=18.9
Q ss_pred HHhhccCCcceeeeccCCCCcceEecc
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..+..|.+ ++..|+||+|||+....
T Consensus 9 ~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 9 EAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHcCCC--EEEECCCCCccHHHHHH
Confidence 33456666 77899999999988753
No 115
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=77.17 E-value=0.82 Score=41.39 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=15.5
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 568889999999998874
No 116
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=76.56 E-value=1.3 Score=44.23 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=18.8
Q ss_pred hccCCcceeeeccCCCCcceEec
Q psy5719 112 LAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 112 l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+.-..+.|+-.|+||||||.||.
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHH
Confidence 33356889999999999998884
No 117
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.09 E-value=1.5 Score=41.66 Aligned_cols=27 Identities=37% Similarity=0.489 Sum_probs=20.7
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++..-.+.|+-.|.||||||.||.
T Consensus 72 l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 72 FRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 344555556678899999999998884
No 118
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=74.94 E-value=1 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.6
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
..++-+|.+|||||+++..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~ 21 (148)
T smart00382 3 EVILIVGPPGSGKTTLARA 21 (148)
T ss_pred CEEEEECCCCCcHHHHHHH
Confidence 4578899999999988743
No 119
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=73.78 E-value=1.9 Score=40.36 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=17.6
Q ss_pred hccCCcceeeeccCCCCcceEec
Q psy5719 112 LAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 112 l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+......++-+|.+|+|||+.+.
T Consensus 39 ~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 39 LSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred HhcCCCEEEEEcCCCCCHHHHHH
Confidence 34345567889999999998774
No 120
>PRK09183 transposase/IS protein; Provisional
Probab=73.32 E-value=2.2 Score=40.47 Aligned_cols=43 Identities=28% Similarity=0.318 Sum_probs=24.3
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 87 DKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 87 D~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.-|.+..+...+..-..... +-.|.| ++-+|++|+||||...
T Consensus 78 d~~~~~~~~~~~i~~L~~~~~---i~~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 78 DFTFATGAPQKQLQSLRSLSF---IERNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred ccccCCCCCHHHHHHHhcCCc---hhcCCe--EEEEeCCCCCHHHHHH
Confidence 333555555544433211111 234554 5679999999998774
No 121
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=73.24 E-value=3.4 Score=45.43 Aligned_cols=23 Identities=39% Similarity=0.540 Sum_probs=18.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..+.+|.|+.|.| +||||||-+
T Consensus 31 ~~~i~~G~nvLiiA--PTGsGKTeA 53 (814)
T COG1201 31 IPEIHSGENVLIIA--PTGSGKTEA 53 (814)
T ss_pred HHHHhCCCceEEEc--CCCCChHHH
Confidence 34567999998876 899999944
No 122
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=72.06 E-value=1.2 Score=40.37 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.3
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.|+-.|+||+|||.|+-
T Consensus 3 vi~lvGptGvGKTTt~a 19 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIA 19 (196)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCchHhHHH
Confidence 46778999999998873
No 123
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=71.55 E-value=2 Score=42.07 Aligned_cols=28 Identities=25% Similarity=0.344 Sum_probs=18.7
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++..++.+. ..|+-.|.||||||.++.
T Consensus 139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 3445555543 456666999999996663
No 124
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=71.49 E-value=3.8 Score=41.14 Aligned_cols=51 Identities=20% Similarity=0.225 Sum_probs=38.4
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhc--c--CCcceeeeccCCCCcceE
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA--G--YNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~--G--~n~~i~ayG~tgSGKTyT 132 (378)
..+.|+.+.+.-.--..+.+.++..+.++++. | ..--+.-||+.|+|||+.
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 45778888777777777888887788888774 2 223467799999999965
No 125
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=70.59 E-value=4.6 Score=41.45 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=17.2
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++..+..|.| |+-||.+|+|||+..
T Consensus 187 l~~~L~~~~~--iil~GppGtGKT~lA 211 (459)
T PRK11331 187 ILKRLTIKKN--IILQGPPGVGKTFVA 211 (459)
T ss_pred HHHHHhcCCC--EEEECCCCCCHHHHH
Confidence 3444445555 445999999999776
No 126
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=70.28 E-value=3.9 Score=41.19 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.3
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+.+|+||+|||.|+-
T Consensus 174 ~~vi~lvGptGvGKTTT~a 192 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIA 192 (388)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578899999999999883
No 127
>PHA00729 NTP-binding motif containing protein
Probab=69.84 E-value=3.4 Score=38.46 Aligned_cols=31 Identities=32% Similarity=0.249 Sum_probs=22.4
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++..+..+..|--..|+-+|.+|+||||-..
T Consensus 5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA~ 35 (226)
T PHA00729 5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYAL 35 (226)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCCHHHHHH
Confidence 4455666655444579999999999996653
No 128
>PF13479 AAA_24: AAA domain
Probab=69.27 E-value=1.8 Score=39.57 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCcceEecc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G 135 (378)
+..++-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45688999999999976643
No 129
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=69.09 E-value=3.3 Score=40.08 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+||.+.+ |+++.+.+ ... +-.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L-~~~---~~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERL-SRA---VDSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHH-HHH---HhCCCCceEEEECCCCCCHHHHHH
Confidence 3566654 44444432 222 223443458889999999998774
No 130
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.83 E-value=2.3 Score=38.20 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=20.1
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+...+-.|.+.+++-||+.|+|||..|.
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl~ 38 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLLK 38 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHHH
Confidence 33333345668889999999999997663
No 131
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=68.65 E-value=3.3 Score=37.93 Aligned_cols=20 Identities=25% Similarity=0.340 Sum_probs=14.1
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+-.+++.|+.||||||.-.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~ 37 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLAL 37 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHH
T ss_pred hCCeEEEECCCCCcHHHHHH
Confidence 45678999999999997653
No 132
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=68.54 E-value=2.2 Score=34.82 Aligned_cols=15 Identities=33% Similarity=0.468 Sum_probs=12.9
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+-||++|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 567999999999776
No 133
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=68.50 E-value=4.8 Score=39.99 Aligned_cols=81 Identities=16% Similarity=0.296 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHH-hhc--cCC--cceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCccc
Q psy5719 96 QEKVYDEAAKSIVSD-VLA--GYN--GTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHT 170 (378)
Q Consensus 96 Q~~vf~~~~~~lv~~-~l~--G~n--~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~t 170 (378)
-+++.+.+-.||... .|. |.. --|+-||+.|+||| ++.++...--.+.| ..
T Consensus 160 i~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKT--------------LLAkAVA~~T~AtF----------Ir 215 (406)
T COG1222 160 IQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKT--------------LLAKAVANQTDATF----------IR 215 (406)
T ss_pred HHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHH--------------HHHHHHHhccCceE----------EE
Confidence 356666666676643 443 444 34899999999999 34444322111111 11
Q ss_pred ccccCCCCCCCCchhhhHHHHHhhhhcccc
Q psy5719 171 MEGVMGDPNKQGIIPRIVNDIFNHIYQMDE 200 (378)
Q Consensus 171 m~g~~~~~~~~Giipr~~~~lf~~l~~~~~ 200 (378)
+.|+.--...-|-=+|.+.++|....+..+
T Consensus 216 vvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 216 VVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred eccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 112111111336668999999998876544
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=68.33 E-value=2.1 Score=36.96 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=22.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
+..-|.+++... .++. ..++-.|.+|||||.++..
T Consensus 9 ~~~~Q~~~~~~~--------~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 9 LRPYQKEAIEAL--------LSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred CCHHHHHHHHHH--------HcCC-CcEEEECCCCCchhHHHHH
Confidence 445566665543 3331 3457789999999997754
No 135
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=67.84 E-value=2.1 Score=38.50 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=13.1
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
..+-.|+.|||||+|+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~ 36 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLAS 36 (236)
T ss_dssp -EEEE-STTSSHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 456689999999988853
No 136
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=66.49 E-value=2.7 Score=40.72 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=19.9
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~ 150 (299)
T TIGR02782 123 DVLREAVLA-RKNILVVGGTGSGKTTLAN 150 (299)
T ss_pred HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence 444555553 4567889999999998773
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=66.48 E-value=2.6 Score=42.36 Aligned_cols=18 Identities=28% Similarity=0.471 Sum_probs=14.8
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345889999999999665
No 138
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=66.39 E-value=2.5 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=12.9
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3678899999999553
No 139
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=66.09 E-value=9.3 Score=35.66 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=27.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhc-c-CCcceeeeccCCCCcc
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLA-G-YNGTIFAYGQTSSGKT 130 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~-G-~n~~i~ayG~tgSGKT 130 (378)
|++-..|+++-.. .+.+++.+.. | .-..++-||++|.|||
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKT 64 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKT 64 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchh
Confidence 5667889999887 4677777654 3 2345899999999999
No 140
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=66.09 E-value=2.4 Score=40.26 Aligned_cols=21 Identities=29% Similarity=0.408 Sum_probs=16.2
Q ss_pred CCcceeeeccCCCCcceEecc
Q psy5719 115 YNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~G 135 (378)
.++.++-.|..|||||+||..
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ 32 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLE 32 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHH
Confidence 667788889999999999864
No 141
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=65.80 E-value=5.4 Score=38.23 Aligned_cols=18 Identities=39% Similarity=0.444 Sum_probs=14.5
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
.|+-.|+||+|||+|+..
T Consensus 196 vi~~vGptGvGKTTt~~k 213 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAK 213 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 566669999999999853
No 142
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=65.76 E-value=3.3 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.504 Sum_probs=14.7
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
.-.|+-||++|+|||.+-
T Consensus 151 PknVLFyGppGTGKTm~A 168 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMA 168 (368)
T ss_pred cceeEEECCCCccHHHHH
Confidence 346889999999999654
No 143
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=65.55 E-value=2.7 Score=35.14 Aligned_cols=15 Identities=33% Similarity=0.477 Sum_probs=13.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+..|.+|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999665
No 144
>KOG0727|consensus
Probab=65.43 E-value=1.9 Score=40.85 Aligned_cols=91 Identities=16% Similarity=0.244 Sum_probs=48.9
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhh-c--cCC--cceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVL-A--GYN--GTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l-~--G~n--~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
|..|=+-+..-++|-+.+-.|+...=+ . |.+ --|+.||+.|+|||--.-...... .+
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-~a----------------- 215 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-TA----------------- 215 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-ch-----------------
Confidence 344444455556677666666665433 1 433 348999999999983321110000 00
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccc
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE 200 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~ 200 (378)
......|...-...-|--||.+.++|....+..+
T Consensus 216 ------~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 216 ------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred ------heeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 0011112211112347779999999998876544
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=65.33 E-value=3.4 Score=39.83 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=16.1
Q ss_pred ccCC-cceeeeccCCCCcceEec
Q psy5719 113 AGYN-GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 113 ~G~n-~~i~ayG~tgSGKTyTm~ 134 (378)
.|.- ..++-||++|+|||+.+.
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHH
Confidence 4443 456669999999998764
No 146
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=64.60 E-value=1.9 Score=42.87 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.0
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..++-||++|+|||+..-
T Consensus 157 ~gvLL~GppGtGKT~lak 174 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAK 174 (364)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 348889999999997763
No 147
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=64.26 E-value=2.1 Score=38.56 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=13.1
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999998885
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.97 E-value=3.4 Score=41.77 Aligned_cols=50 Identities=12% Similarity=0.291 Sum_probs=31.1
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-Hhhc--c--CCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLA--G--YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~--G--~n~~i~ayG~tgSGKTyTm 133 (378)
++|+.|-+.+..-+++-+.+..|+.. ..+. | ....|+-||++|+|||+..
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 55666665554455555555555543 3443 2 2356888999999999765
No 149
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=63.71 E-value=4 Score=36.34 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=18.0
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+++...+.. ...+.-.|.||||||.++
T Consensus 16 ~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 16 AYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 344444442 345677899999999776
No 150
>PRK10536 hypothetical protein; Provisional
Probab=63.05 E-value=4.2 Score=38.66 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=29.8
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
-.|.|..|-+-+..|...... +.+ +..++..|.+||||||...
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~a--------l~~--~~lV~i~G~aGTGKT~La~ 92 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKA--------IES--KQLIFATGEAGCGKTWISA 92 (262)
T ss_pred hhcCCccccCCCHHHHHHHHH--------Hhc--CCeEEEECCCCCCHHHHHH
Confidence 457777777766666654442 223 3488999999999998764
No 151
>PRK06547 hypothetical protein; Provisional
Probab=62.74 E-value=5.9 Score=35.10 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=18.8
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
...+..+..+.--.|.-+|.+|||||+.-
T Consensus 4 ~~~~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 4 ALIAARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHHHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 33444545444455666799999999543
No 152
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=62.40 E-value=4.7 Score=43.71 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHh-hccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDV-LAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~-l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-. ......+ ..+.|-||+-.|.+|||||+|.
T Consensus 66 PHif~~a-~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 66 PHIFAVA-QRAYRQMLRTRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp SSHHHHH-HHHHHHHHHHTSEEEEEEEESTTSSHHHHH
T ss_pred Cccchhh-hcccccccccccccceeeccccccccccch
Confidence 3466553 3333333 3689999999999999999885
No 153
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=62.35 E-value=4.2 Score=39.92 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=18.3
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++..++.+. ..|+-.|.||||||.+|.
T Consensus 136 ~L~~~v~~~-~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 136 VIRSAIDSR-LNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence 344444422 347889999999998873
No 154
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=62.32 E-value=2 Score=37.39 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=12.7
Q ss_pred hccCCcceeeeccCCCCcceEe
Q psy5719 112 LAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 112 l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+...+++-+|.+|+|||+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHH
Confidence 3566778999999999999766
No 155
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=62.29 E-value=4.7 Score=38.84 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=17.5
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
.-+.+|.-+|..|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56778999999999999877
No 156
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=62.11 E-value=6.5 Score=37.65 Aligned_cols=44 Identities=20% Similarity=0.238 Sum_probs=26.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhc--cCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLA--GYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~--G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|++-..|+++-+.+ ...+..... +....++-||++|+|||+...
T Consensus 3 ~~~~iG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 3 LAEFIGQEKVKEQL-QLFIEAAKMRQEALDHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred HHHHcCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 33445677777663 344443322 222347779999999997763
No 157
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=61.74 E-value=5 Score=35.71 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..-|.+.+.. ++.|.| ++..++||+|||.+.
T Consensus 23 ~~~Q~~~~~~--------~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 23 TPIQARAIPP--------LLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred CHHHHHHHHH--------HhcCCc--EEEECCCCCcHHHHH
Confidence 3346555544 344766 677899999999773
No 158
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=61.29 E-value=2.6 Score=34.08 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.2
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
|+-||.+|.|||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~ 16 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK 16 (107)
T ss_pred CEEECCCCCCHHHHHH
Confidence 5679999999997763
No 159
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=60.91 E-value=4.6 Score=40.81 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=18.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.| |++-++||||||.+.
T Consensus 39 ip~il~g~d--vi~~ApTGsGKTla~ 62 (423)
T PRK04837 39 LPLTLAGRD--VAGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHhCCCc--EEEECCCCchHHHHH
Confidence 345678887 566779999999753
No 160
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=60.81 E-value=4.7 Score=42.22 Aligned_cols=30 Identities=23% Similarity=0.476 Sum_probs=23.0
Q ss_pred HHHHHHHhhccCC--cceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGYN--GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~n--~~i~ayG~tgSGKTyTm 133 (378)
|+..++..+.|.. ..++-+|++|+|||.|+
T Consensus 31 V~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 31 VRSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 5666676666554 45788999999999988
No 161
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=60.81 E-value=3.5 Score=38.85 Aligned_cols=48 Identities=15% Similarity=0.354 Sum_probs=34.2
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcc-eeeeccCCCCcceEec
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGT-IFAYGQTSSGKTHTME 134 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~-i~ayG~tgSGKTyTm~ 134 (378)
....+|...+-+...+.+.+.+ ..++.|..+- ++-||..|+|||.++-
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt-----~~Fl~G~pannvLL~G~rGtGKSSlVk 70 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENT-----EQFLQGLPANNVLLWGARGTGKSSLVK 70 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHH-----HHHHcCCCCcceEEecCCCCCHHHHHH
Confidence 3455677777666666555554 5677877665 7779999999997764
No 162
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=60.68 E-value=6.1 Score=40.42 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=17.4
Q ss_pred HHhhccCCcceeeeccCCCCcceE
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
..+++|.| ++..++||||||.+
T Consensus 36 ~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 36 PAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHhcCCC--EEEECCCCCcHHHH
Confidence 34567887 67788999999965
No 163
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=60.53 E-value=6.6 Score=39.62 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHhhcc----CCcceeeeccCCCCcceEe
Q psy5719 96 QEKVYDEAAKSIVSDVLAG----YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 96 Q~~vf~~~~~~lv~~~l~G----~n~~i~ayG~tgSGKTyTm 133 (378)
+...|......++..+.+- ....|.-.|+||-|||.|+
T Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 179 DLRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL 220 (407)
T ss_pred hhhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence 3444444444444444433 2556677799999999998
No 164
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=60.28 E-value=3.2 Score=36.76 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.5
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45788999999999876
No 165
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=59.48 E-value=9.8 Score=39.76 Aligned_cols=138 Identities=15% Similarity=0.251 Sum_probs=69.1
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE---ecccCCCCC------CC-----Cc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT---MEGVMGDPN------KQ-----GI 145 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT---m~G~~~~~~------~~-----gi 145 (378)
....|+||.+.+.+..=.++-+. + .-..+.+++|+-+|.||+||--- |.-.....+ +. .+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~-----a-kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLEL-----A-KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cccccchhhhccCCHHHHHHHHH-----H-HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 35679999999865432222221 1 24578999999999999999521 110000000 11 22
Q ss_pred hhhhhhcccCccccccCCCCCC---cccccccCCCCCCCCchhhhHHH-HHhhhhcc-----cccceeEEEEeeeeeecc
Q psy5719 146 IPHVLAGYNGTIFAYGQTSSGK---THTMEGVMGDPNKQGIIPRIVND-IFNHIYQM-----DENLEFIIKVSYFEIYMD 216 (378)
Q Consensus 146 l~r~l~g~~~~i~aygqtgsgK---t~tm~g~~~~~~~~Giipr~~~~-lf~~l~~~-----~~~~~~~V~vS~~EIYnE 216 (378)
|.+-|-||...-|. |....|| .--..|..---+.-|-+|..++. +.+-+++. .......|-|-.+---|.
T Consensus 312 lESELFGye~GAFT-GA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~ 390 (560)
T COG3829 312 LESELFGYEKGAFT-GASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNR 390 (560)
T ss_pred HHHHHhCcCCcccc-ccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCc
Confidence 33333344433332 2222223 22223332222445778877764 44444332 223444555555555676
Q ss_pred cccccccc
Q psy5719 217 KIRDLLDV 224 (378)
Q Consensus 217 ~i~DLL~~ 224 (378)
.+.++...
T Consensus 391 nL~~~i~~ 398 (560)
T COG3829 391 NLEKMIAE 398 (560)
T ss_pred CHHHHHhc
Confidence 66666553
No 166
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=59.45 E-value=7.8 Score=37.93 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=14.9
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|.-.|++|+|||.|+.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~ 132 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG 132 (318)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3456677999999998873
No 167
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=59.09 E-value=4.1 Score=32.99 Aligned_cols=15 Identities=40% Similarity=0.317 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 566899999999543
No 168
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=59.02 E-value=4.8 Score=39.74 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=18.7
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++..+..+. +.|+-.|-||||||.++
T Consensus 165 ~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 165 FLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 334444444 66888999999999776
No 169
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=59.00 E-value=5.2 Score=39.41 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++..++.+ ...|+-.|.||||||.+|.
T Consensus 151 ~~L~~~v~~-~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 151 EFLEHAVIS-KKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHHHc-CCcEEEECCCCCCHHHHHH
Confidence 334444433 2447788999999997773
No 170
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=58.98 E-value=5.6 Score=40.75 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.6
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++|.| +++-.+||||||.+.
T Consensus 32 i~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 32 IPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 345677887 678889999999763
No 171
>PLN03025 replication factor C subunit; Provisional
Probab=58.25 E-value=5.9 Score=38.53 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=16.3
Q ss_pred cCCcceeeeccCCCCcceEecc
Q psy5719 114 GYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm~G 135 (378)
|.-..++-||++|+|||++...
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3333466799999999988753
No 172
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=58.21 E-value=3.5 Score=40.82 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=18.5
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++..+.. ....|+-.|.||||||.+|.
T Consensus 153 ~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 153 AFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 33444333 23447788999999998774
No 173
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=57.96 E-value=4.5 Score=33.81 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.1
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999766
No 174
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=57.67 E-value=7.4 Score=37.35 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=21.9
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+.||+ ..+.--+..+--||+|++|||.++
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~ 210 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTAL 210 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHH
Confidence 45555 355666778889999999999766
No 175
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=56.96 E-value=3.8 Score=36.91 Aligned_cols=21 Identities=29% Similarity=0.275 Sum_probs=14.9
Q ss_pred cCCcceeeeccCCCCcceEec
Q psy5719 114 GYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.....++.-|+.|||||+.+.
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~ 33 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLAR 33 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHH
Confidence 344668899999999997663
No 176
>PTZ00424 helicase 45; Provisional
Probab=56.85 E-value=7.6 Score=38.66 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=18.7
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+..+++|.|. +..++||||||.+.
T Consensus 58 ai~~i~~~~d~--ii~apTGsGKT~~~ 82 (401)
T PTZ00424 58 GIKPILDGYDT--IGQAQSGTGKTATF 82 (401)
T ss_pred HHHHHhCCCCE--EEECCCCChHHHHH
Confidence 34556788885 46789999999764
No 177
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=56.74 E-value=3.9 Score=40.95 Aligned_cols=19 Identities=37% Similarity=0.466 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...++-.|+||+|||+|+.
T Consensus 137 g~ii~lvGptGvGKTTtia 155 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTA 155 (374)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4567789999999999984
No 178
>KOG2543|consensus
Probab=56.71 E-value=3.7 Score=41.05 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=17.6
Q ss_pred ceeeeccCCCCcceEecccCCCC
Q psy5719 118 TIFAYGQTSSGKTHTMEGVMGDP 140 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G~~~~~ 140 (378)
-|+-||.+||||||++.-....+
T Consensus 32 ~~~iyG~sgTGKT~~~r~~l~~~ 54 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLVRQLLRKL 54 (438)
T ss_pred eEEEeccCCCchhHHHHHHHhhc
Confidence 35889999999999986544333
No 179
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=56.70 E-value=4.7 Score=40.08 Aligned_cols=46 Identities=20% Similarity=0.398 Sum_probs=30.1
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..|.|+.|-+ |+++=.. ++..+.+-.-+-|+-+|.+|||||+.+-+
T Consensus 12 ~~~pf~~ivG----q~~~k~a----l~~~~~~p~~~~vli~G~~GtGKs~~ar~ 57 (350)
T CHL00081 12 PVFPFTAIVG----QEEMKLA----LILNVIDPKIGGVMIMGDRGTGKSTTIRA 57 (350)
T ss_pred CCCCHHHHhC----hHHHHHH----HHHhccCCCCCeEEEEcCCCCCHHHHHHH
Confidence 3688888876 4444333 33344443334588999999999988754
No 180
>PRK13764 ATPase; Provisional
Probab=56.63 E-value=5.1 Score=42.66 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=16.9
Q ss_pred CCcceeeeccCCCCcceEecc
Q psy5719 115 YNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~G 135 (378)
....|+-.|.||||||+++..
T Consensus 256 ~~~~ILIsG~TGSGKTTll~A 276 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQA 276 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHH
Confidence 344589999999999988744
No 181
>PRK05580 primosome assembly protein PriA; Validated
Probab=56.61 E-value=6.9 Score=42.42 Aligned_cols=42 Identities=19% Similarity=0.052 Sum_probs=28.3
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++.-+.....|+++++.+... . .+..++.+|.||||||.+..
T Consensus 139 ~~~~~~Lt~~Q~~ai~~i~~~----~---~~~~~Ll~~~TGSGKT~v~l 180 (679)
T PRK05580 139 AFEPPTLNPEQAAAVEAIRAA----A---GFSPFLLDGVTGSGKTEVYL 180 (679)
T ss_pred ccCCCCCCHHHHHHHHHHHhc----c---CCCcEEEECCCCChHHHHHH
Confidence 444555667788777665322 1 33458899999999997653
No 182
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=55.95 E-value=9.8 Score=39.98 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=27.5
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
-+|+.+++.+. . ++.+...+.......|+-||.+|+|||+.-
T Consensus 62 ~~f~~iiGqs~----~----i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEE----G----IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHH----H----HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 45677776542 2 233333445566677888999999998654
No 183
>KOG0336|consensus
Probab=55.93 E-value=16 Score=37.08 Aligned_cols=63 Identities=25% Similarity=0.287 Sum_probs=33.8
Q ss_pred ceeccccccCCCCCcCCCCeeEecccccCCCCChHHHHHHHHH-------HHHH----HhhccCCcceeeeccCCCCcce
Q psy5719 63 AVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAK-------SIVS----DVLAGYNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~-------~lv~----~~l~G~n~~i~ayG~tgSGKTy 131 (378)
+|.+-++-.+...+.. .-..+||..|... .+|-+.+.+ |+-. -+|+|.+++- ..|||+|||-
T Consensus 200 ~it~dd~K~gekrpIP--nP~ctFddAFq~~---pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliG--VAQTgtgKtL 272 (629)
T KOG0336|consen 200 NITCDDLKEGEKRPIP--NPVCTFDDAFQCY---PEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIG--VAQTGTGKTL 272 (629)
T ss_pred cEEecccccCCcccCC--CCcCcHHHHHhhh---HHHHHHHHhccCCCCCcchhcccceeecCcceEE--EEecCCCcCH
Confidence 4444444444433322 2357789999643 233333321 1111 1578888654 4599999984
Q ss_pred E
Q psy5719 132 T 132 (378)
Q Consensus 132 T 132 (378)
.
T Consensus 273 ~ 273 (629)
T KOG0336|consen 273 A 273 (629)
T ss_pred H
Confidence 4
No 184
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=55.76 E-value=11 Score=38.50 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=16.1
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+-+|.+|+|||.|..
T Consensus 95 p~vI~lvG~~GsGKTTtaa 113 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAA 113 (437)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4578889999999998873
No 185
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=55.60 E-value=10 Score=41.14 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHh-hccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDV-LAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~-l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-.- .....+ -.+.|.||+.-|.+|||||.|.
T Consensus 73 PHifavA~-~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 73 PHVFAIAD-NAYRNMLNDKENQSIIISGESGAGKTENT 109 (677)
T ss_pred CCHHHHHH-HHHHHHHhcCCCceEEEecCCCCcchHHH
Confidence 44665542 223333 3699999999999999999886
No 186
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=55.54 E-value=4.3 Score=38.24 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=14.2
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-||++|+|||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44778999999999776
No 187
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=55.39 E-value=4.3 Score=38.45 Aligned_cols=54 Identities=28% Similarity=0.436 Sum_probs=29.6
Q ss_pred eccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhh
Q psy5719 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRI 187 (378)
Q Consensus 122 yG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~ 187 (378)
.|+.|+|||.|+- +|-..+.-..+.|.-.|+.-+-..+-..|. -|+.+|+.|..
T Consensus 34 lG~NGAGKTTtfR----------mILglle~~~G~I~~~g~~~~~~~~~rIGy--LPEERGLy~k~ 87 (300)
T COG4152 34 LGPNGAGKTTTFR----------MILGLLEPTEGEITWNGGPLSQEIKNRIGY--LPEERGLYPKM 87 (300)
T ss_pred ecCCCCCccchHH----------HHhccCCccCceEEEcCcchhhhhhhhccc--ChhhhccCccC
Confidence 4999999998862 111122222334444444444333333443 36788998864
No 188
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=55.38 E-value=6.4 Score=45.13 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEeccc
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
.+++.+-+|....+ ....||||||+|+...
T Consensus 424 ai~~a~~~g~r~~L-l~maTGSGKT~tai~l 453 (1123)
T PRK11448 424 AVEKAIVEGQREIL-LAMATGTGKTRTAIAL 453 (1123)
T ss_pred HHHHHHHhccCCeE-EEeCCCCCHHHHHHHH
Confidence 33444445665544 4489999999998653
No 189
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=54.74 E-value=8.7 Score=36.77 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.4
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|....++-||++|+|||+++
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445788999999999776
No 190
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=54.02 E-value=9.1 Score=38.77 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=18.2
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..+++|.| ++..++||||||.+
T Consensus 32 i~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 32 IPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHhCCCC--EEEECCCCChHHHH
Confidence 344567876 78889999999976
No 191
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=53.94 E-value=12 Score=40.47 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.||.-. ......++ .+.|-||+.-|.+|||||.|.
T Consensus 74 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 74 HVYAIA-DTAYNEMMRDEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcchHH
Confidence 456543 33344444 599999999999999999875
No 192
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=53.06 E-value=13 Score=40.30 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 67 PHIFAIS-DNAYTNMQREKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred CCHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCeehHH
Confidence 3455543 33333333 599999999999999999886
No 193
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=53.04 E-value=6.1 Score=38.78 Aligned_cols=15 Identities=47% Similarity=0.598 Sum_probs=13.0
Q ss_pred cceeeeccCCCCcce
Q psy5719 117 GTIFAYGQTSSGKTH 131 (378)
Q Consensus 117 ~~i~ayG~tgSGKTy 131 (378)
+-|+-.|+||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 558889999999994
No 194
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=52.81 E-value=12 Score=40.47 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=19.5
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.|.||+.-|.+|||||.|.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 599999999999999999876
No 195
>PRK14974 cell division protein FtsY; Provisional
Probab=52.45 E-value=15 Score=36.37 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+-.|.+|+|||.|+-
T Consensus 140 ~~vi~~~G~~GvGKTTtia 158 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIA 158 (336)
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 4578888999999998873
No 196
>PRK04328 hypothetical protein; Provisional
Probab=52.43 E-value=9.7 Score=35.71 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=20.6
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcc
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKT 130 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKT 130 (378)
+-++.++.| ..++++-+|.+|||||
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT 37 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKS 37 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHH
Confidence 456777876 5788899999999998
No 197
>PRK13342 recombination factor protein RarA; Reviewed
Probab=52.36 E-value=8.5 Score=38.97 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=24.0
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..|+.+... ..++...+-.+.-..++-||++|+|||....
T Consensus 15 vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 15 VGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLAR 54 (413)
T ss_pred cCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHHH
Confidence 345555433 1223333344555567779999999996653
No 198
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=51.88 E-value=12 Score=40.48 Aligned_cols=36 Identities=25% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+|.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 67 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 67 PHVFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3466543 33344444 599999999999999999876
No 199
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=51.79 E-value=13 Score=40.43 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 75 PHiy~iA-~~Ay~~m~~~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 75 PHIFAIA-DVAYYNMLRKKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 3456543 33333333 589999999999999999886
No 200
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=51.52 E-value=13 Score=40.70 Aligned_cols=35 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.||.-. ......++ .|.|.||+.-|.+|||||.|.
T Consensus 73 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 73 HVFAIA-DKAYRDMKVLKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cHHHHH-HHHHHHHHhcCCCCeEEEecCCCCChhHHH
Confidence 355543 33333333 699999999999999999886
No 201
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=51.45 E-value=14 Score=40.08 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 68 HIYALA-DNAYRSMKSENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEEcCCCCCcchHH
Confidence 466543 22233333 599999999999999999886
No 202
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=51.39 E-value=9.7 Score=41.20 Aligned_cols=32 Identities=31% Similarity=0.279 Sum_probs=21.6
Q ss_pred HHHHHHHhhc-----cCCcceeeeccCCCCcceEeccc
Q psy5719 104 AKSIVSDVLA-----GYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 104 ~~~lv~~~l~-----G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
+..+++.+.. |.+..++. -.||||||+||...
T Consensus 247 v~~~~~~~~~~~~~~~~~~gli~-~~TGsGKT~t~~~l 283 (667)
T TIGR00348 247 VKKIVESITRKTWGKDERGGLIW-HTQGSGKTLTMLFA 283 (667)
T ss_pred HHHHHHHHHhcccCCCCceeEEE-EecCCCccHHHHHH
Confidence 5666677665 34444443 48999999999643
No 203
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=51.26 E-value=12 Score=40.48 Aligned_cols=40 Identities=25% Similarity=0.272 Sum_probs=28.2
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|.+...|+.+...+.. +.-.+...-++..|+||||||...
T Consensus 260 f~lt~~Q~~ai~~I~~----d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 260 FELTGAQKRVVAEILA----DLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCCHHHHHHHHHHHH----hhhccCCceEEEECCCCCcHHHHH
Confidence 4567778777766543 333455566889999999999754
No 204
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=51.16 E-value=13 Score=40.47 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-. ......++ .+.|.||+.-|.+|||||.|.
T Consensus 72 PHiyaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 72 PHIFAIA-DNAYRSMLQDRENQSILITGESGAGKTENT 108 (693)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 4466543 33333333 599999999999999999875
No 205
>PRK10865 protein disaggregation chaperone; Provisional
Probab=51.12 E-value=17 Score=40.47 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.6
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.++-+|+||+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46788899999999876
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=50.62 E-value=8 Score=34.76 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=17.1
Q ss_pred HHhhccC---CcceeeeccCCCCcceE
Q psy5719 109 SDVLAGY---NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 109 ~~~l~G~---n~~i~ayG~tgSGKTyT 132 (378)
+.++.|- +..+.-||.+|||||.-
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l 28 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNI 28 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHH
Confidence 3445443 56688899999999943
No 207
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=50.45 E-value=13 Score=36.95 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.3
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+.+|.+..++..++||||||...
T Consensus 8 ~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 8 ALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHcCCCCEEEEECCCCCCHHHHH
Confidence 346777777888999999999763
No 208
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=50.42 E-value=17 Score=38.08 Aligned_cols=47 Identities=21% Similarity=0.242 Sum_probs=32.6
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
...+.|+.+.+.+..=+++.+.+ .. +...+..|+-+|.+||||++.-
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~-----~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQA-----RV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cccCccCceEECCHHHHHHHHHH-----HH-HhCcCCCEEEECCCCccHHHHH
Confidence 34578899988765444444443 22 2356888999999999999654
No 209
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=50.10 E-value=14 Score=40.18 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 68 HIFAIA-EEAYKQMTRDEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred CHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 355443 22233333 699999999999999999875
No 210
>KOG0953|consensus
Probab=50.05 E-value=7.4 Score=40.76 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.6
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.||..|+|+|||||--.
T Consensus 193 Ii~H~GPTNSGKTy~AL 209 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRAL 209 (700)
T ss_pred EEEEeCCCCCchhHHHH
Confidence 37999999999998754
No 211
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=49.85 E-value=11 Score=39.03 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=30.1
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHH-Hhhc--c--CCcceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVS-DVLA--G--YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~--G--~n~~i~ayG~tgSGKTyTm 133 (378)
...+||.|.+.+...+++-+ ++..+-. ..+. | ..-.++-||++|+|||+..
T Consensus 50 ~~~~~~di~g~~~~k~~l~~-~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la 105 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHH-HHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHH
Confidence 45778888876655555443 2222111 0111 2 2234888999999999875
No 212
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=49.60 E-value=6.1 Score=40.48 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-||++|+|||.+.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999765
No 213
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=49.59 E-value=16 Score=39.66 Aligned_cols=36 Identities=25% Similarity=0.372 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 97 EKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 97 ~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
..||.-. ......++ .|.|-||+--|.+|||||.|.
T Consensus 68 PHifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 68 PHLFAIA-NLAFAKMLDAKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred CCHHHHH-HHHHHHHHhcCCCceEEEEcCCCCCeehHH
Confidence 3466543 33333333 699999999999999999886
No 214
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=49.38 E-value=9.6 Score=40.41 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=19.0
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|..+++|.| |++..+||||||.+.
T Consensus 40 ip~~l~G~D--vi~~ApTGSGKTlaf 63 (572)
T PRK04537 40 LPVALPGGD--VAGQAQTGTGKTLAF 63 (572)
T ss_pred HHHHhCCCC--EEEEcCCCCcHHHHH
Confidence 445778988 667899999999764
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=49.29 E-value=11 Score=34.46 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=21.2
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.| ...++.-+|.+|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456777775 4566888999999999544
No 216
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=48.44 E-value=12 Score=40.08 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=18.4
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+ |+..++||||||.+.
T Consensus 37 i~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 37 IPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 344567876 788889999999764
No 217
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=48.29 E-value=6.9 Score=36.25 Aligned_cols=20 Identities=30% Similarity=0.527 Sum_probs=16.3
Q ss_pred CcceeeeccCCCCcceEecc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G 135 (378)
...++-||.+|+|||++.-.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~ 31 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKY 31 (220)
T ss_pred CcEEEEECCCCCCHHHHHHh
Confidence 34589999999999987644
No 218
>PHA02653 RNA helicase NPH-II; Provisional
Probab=48.20 E-value=18 Score=39.22 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=22.1
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+-|.++-+.+ +..+++|.+ ++..|+||||||.-
T Consensus 163 ~~~~~iQ~qi----l~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 163 SLQPDVQLKI----FEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred chhHHHHHHH----HHHHHhCCC--EEEECCCCCCchhH
Confidence 4466665554 334455654 68899999999964
No 219
>KOG1803|consensus
Probab=47.75 E-value=7.5 Score=41.00 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=14.5
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
-...--|++|+|||||+.
T Consensus 202 ~l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLV 219 (649)
T ss_pred CceEeeCCCCCCceeeHH
Confidence 345567999999999984
No 220
>KOG0736|consensus
Probab=47.68 E-value=23 Score=38.68 Aligned_cols=21 Identities=14% Similarity=0.532 Sum_probs=17.3
Q ss_pred CCCchhhhHHHHHhhhhcccc
Q psy5719 180 KQGIIPRIVNDIFNHIYQMDE 200 (378)
Q Consensus 180 ~~Giipr~~~~lf~~l~~~~~ 200 (378)
.-|++-|++..+..++.....
T Consensus 786 SGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 786 SGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred ccccHHHHHHHHHHHhhcccC
Confidence 459999999999999877543
No 221
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=47.64 E-value=18 Score=34.12 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=16.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+..|.+ |+-+|.+|+|||...
T Consensus 15 l~~l~~g~~--vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 15 LRYLKSGYP--VHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHhcCCe--EEEEcCCCCCHHHHH
Confidence 344445554 456899999999554
No 222
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=47.39 E-value=11 Score=36.70 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=20.0
Q ss_pred hccCCcceeeeccCCCCcceEeccc
Q psy5719 112 LAGYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 112 l~G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
....+.-++-||..|||||.||.-.
T Consensus 19 ~~~~~~r~vL~G~~GsGKS~~L~q~ 43 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKSVLLAQA 43 (309)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHH
Confidence 3466677899999999999998543
No 223
>PRK04195 replication factor C large subunit; Provisional
Probab=46.91 E-value=8.2 Score=39.93 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=20.8
Q ss_pred HHHHHHhhccC-CcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGY-NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm 133 (378)
...+.....|. .-.++-||++|+|||++.
T Consensus 27 ~~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 27 REWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 44445555554 456888999999999776
No 224
>PHA02244 ATPase-like protein
Probab=46.75 E-value=18 Score=36.35 Aligned_cols=19 Identities=37% Similarity=0.559 Sum_probs=14.3
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.+ |+-+|+||+|||+-.
T Consensus 118 ~~~P--VLL~GppGtGKTtLA 136 (383)
T PHA02244 118 ANIP--VFLKGGAGSGKNHIA 136 (383)
T ss_pred cCCC--EEEECCCCCCHHHHH
Confidence 4554 555999999999655
No 225
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=46.68 E-value=7.1 Score=37.49 Aligned_cols=21 Identities=33% Similarity=0.562 Sum_probs=17.7
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|++-+||.-|++|+|||.-|
T Consensus 1 kg~~fnImVvG~sG~GKTTFI 21 (281)
T PF00735_consen 1 KGFNFNIMVVGESGLGKTTFI 21 (281)
T ss_dssp HEEEEEEEEEECTTSSHHHHH
T ss_pred CCceEEEEEECCCCCCHHHHH
Confidence 378889999999999999533
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=46.11 E-value=17 Score=36.92 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=15.3
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..|+-.|++|+|||.|+.
T Consensus 242 ~vI~LVGptGvGKTTTia 259 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLA 259 (436)
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 467888999999998873
No 227
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.10 E-value=18 Score=35.25 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHHHHHhhc--cCCcceeeeccCCCCcceEec
Q psy5719 94 ATQEKVYDEAAKSIVSDVLA--GYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~--G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..|+++-+.+ ..++..... +....++-||++|+|||+...
T Consensus 28 vG~~~~~~~l-~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 28 IGQEKVKENL-KIFIEAAKKRGEALDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred cCcHHHHHHH-HHHHHHHHhcCCCCCcEEEECCCCccHHHHHH
Confidence 4555555543 333333322 222357889999999997763
No 228
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=46.03 E-value=12 Score=38.44 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=19.1
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+..+++|.|..+ ..+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~--~apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIG--RAQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEE--ECCCCChHHHHH
Confidence 34556789988654 559999999654
No 229
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=45.56 E-value=13 Score=40.60 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=17.4
Q ss_pred ccCCcceeeeccCCCCcceEec
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+.-..++-||++|+|||++..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred cCCCceEEEECCCCCCHHHHHH
Confidence 4555578889999999997764
No 230
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=45.47 E-value=14 Score=33.90 Aligned_cols=27 Identities=22% Similarity=0.282 Sum_probs=19.9
Q ss_pred HHHHHhhccC---CcceeeeccCCCCcceE
Q psy5719 106 SIVSDVLAGY---NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 106 ~lv~~~l~G~---n~~i~ayG~tgSGKTyT 132 (378)
+-++.++.|- .++++-+|.+|||||+-
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVL 41 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHH
Confidence 4566777543 57788889999999943
No 231
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=45.17 E-value=11 Score=38.10 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcc
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKT 130 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKT 130 (378)
+-..|+.+.-. .+|+=.-+-.|.-.+.+-||+.|+|||
T Consensus 25 e~vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKT 62 (436)
T COG2256 25 EVVGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKT 62 (436)
T ss_pred HhcChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHH
Confidence 33457777654 355555555688888999999999999
No 232
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=45.06 E-value=7.7 Score=37.86 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.1
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
...||+|||||++-+-
T Consensus 90 ~~VYGPTG~GKSqLlR 105 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLR 105 (369)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3679999999997663
No 233
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=44.91 E-value=16 Score=33.31 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.1
Q ss_pred HHHHHHhhccC---CcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
-|-++.++.|- ...+.-+|.+|||||...
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 34577777543 456789999999999554
No 234
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=44.72 E-value=17 Score=37.46 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=17.8
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|..++.|.+ ++...+||||||.+.
T Consensus 20 i~~~l~g~d--vlv~apTGsGKTl~y 43 (470)
T TIGR00614 20 INAVLLGRD--CFVVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHcCCC--EEEEcCCCCcHhHHH
Confidence 344678886 566689999999753
No 235
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=44.71 E-value=1.7e+02 Score=24.06 Aligned_cols=46 Identities=22% Similarity=0.277 Sum_probs=24.8
Q ss_pred HHHHHHHHhh--hhH-HhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHh
Q psy5719 13 ETALKEAKEG--AMK-DRKRYQYEALETALKEAKEGAMKDRKRYQYEVDR 59 (378)
Q Consensus 13 ~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (378)
|..++.++.. .|| .....-..+|| .|++.|..|++.|+-+-+++.+
T Consensus 6 ElrIkdLeselsk~Ktsq~d~~~~eLE-kYkqly~eElk~r~SLs~kL~k 54 (111)
T PF12001_consen 6 ELRIKDLESELSKMKTSQEDSNKTELE-KYKQLYLEELKLRKSLSNKLNK 54 (111)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 444 33333244444 5788888888887755544443
No 236
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=44.65 E-value=9.5 Score=32.24 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||+.
T Consensus 2 i~l~G~~GsGKST~ 15 (150)
T cd02021 2 IVVMGVSGSGKSTV 15 (150)
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999955
No 237
>PRK00131 aroK shikimate kinase; Reviewed
Probab=44.28 E-value=9.9 Score=32.64 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.6
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
-+|+-+|.+|||||+.
T Consensus 5 ~~i~l~G~~GsGKstl 20 (175)
T PRK00131 5 PNIVLIGFMGAGKSTI 20 (175)
T ss_pred CeEEEEcCCCCCHHHH
Confidence 4688999999999954
No 238
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=44.03 E-value=13 Score=37.16 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.7
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
++..|.||||||+++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 5788999999998873
No 239
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.93 E-value=7.9 Score=39.48 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..++-.|+||+|||+|+.
T Consensus 222 ~~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLA 239 (424)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999999874
No 240
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=43.88 E-value=15 Score=35.43 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=25.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.|...|.++-+.+ .+.+-.|.+ ++.-.+||+|||.+.+
T Consensus 7 y~~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00489 7 YEPYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 34556677665554 333445644 5677899999998764
No 241
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=43.88 E-value=15 Score=35.43 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=25.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.|...|.++-+.+ .+.+-.|.+ ++.-.+||+|||.+.+
T Consensus 7 y~~r~~Q~~~m~~v----~~~~~~~~~--~~~eapTGtGKTl~~L 45 (289)
T smart00488 7 YEPYPIQYEFMEEL----KRVLDRGKI--GILESPTGTGKTLSLL 45 (289)
T ss_pred CCCCHHHHHHHHHH----HHHHHcCCc--EEEECCCCcchhHHHH
Confidence 34556677665554 333445644 5677899999998764
No 242
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.79 E-value=12 Score=35.66 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=16.4
Q ss_pred CcceeeeccCCCCcceEecc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G 135 (378)
+--++-.|++|+|||-++..
T Consensus 33 ~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHH
T ss_pred CCcEEEECCCCCchhHHHHh
Confidence 55678899999999987754
No 243
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=43.75 E-value=7.9 Score=40.19 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=15.1
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..+.-.|+||+|||.|+.
T Consensus 257 ~Vi~LvGpnGvGKTTTia 274 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTA 274 (484)
T ss_pred cEEEEECCCCccHHHHHH
Confidence 467778999999999983
No 244
>CHL00181 cbbX CbbX; Provisional
Probab=43.49 E-value=16 Score=35.12 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=13.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++-||.+|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 677999999999665
No 245
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=43.43 E-value=10 Score=33.16 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+.+|.+|||||+.
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999954
No 246
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=43.27 E-value=12 Score=40.25 Aligned_cols=18 Identities=28% Similarity=0.420 Sum_probs=15.3
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
.++-.|++|||||+|+..
T Consensus 175 ~~lI~GpPGTGKT~t~~~ 192 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVE 192 (637)
T ss_pred eEEEEcCCCCCHHHHHHH
Confidence 456899999999999864
No 247
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=43.23 E-value=6.6 Score=37.44 Aligned_cols=12 Identities=50% Similarity=0.753 Sum_probs=11.0
Q ss_pred eccCCCCcceEe
Q psy5719 122 YGQTSSGKTHTM 133 (378)
Q Consensus 122 yG~tgSGKTyTm 133 (378)
.|.+|||||.||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 599999999887
No 248
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=43.12 E-value=11 Score=31.82 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
+|+.+|.+|||||+.
T Consensus 1 ~i~l~G~~GsGKstl 15 (154)
T cd00464 1 NIVLIGMMGAGKTTV 15 (154)
T ss_pred CEEEEcCCCCCHHHH
Confidence 478899999999943
No 249
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=42.98 E-value=7.1 Score=38.78 Aligned_cols=13 Identities=31% Similarity=0.532 Sum_probs=11.2
Q ss_pred eeccCCCCcceEe
Q psy5719 121 AYGQTSSGKTHTM 133 (378)
Q Consensus 121 ayG~tgSGKTyTm 133 (378)
-.|++|||||.++
T Consensus 36 lLGPSGcGKTTlL 48 (352)
T COG3842 36 LLGPSGCGKTTLL 48 (352)
T ss_pred EECCCCCCHHHHH
Confidence 3599999999876
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=42.74 E-value=11 Score=31.60 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=12.3
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++-+|.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 456899999999765
No 251
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=42.71 E-value=20 Score=38.43 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=26.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|.+...|+.+...+... .-.......+..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 45666687777665433 22333445788999999999754
No 252
>PF05729 NACHT: NACHT domain
Probab=42.33 E-value=9.1 Score=32.34 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=13.8
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.++-+|..|+|||..|.
T Consensus 2 ~l~I~G~~G~GKStll~ 18 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLR 18 (166)
T ss_pred EEEEECCCCCChHHHHH
Confidence 36778999999997764
No 253
>PHA02624 large T antigen; Provisional
Probab=42.26 E-value=21 Score=38.07 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=20.8
Q ss_pred HHHHHhhccCCc--ceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNG--TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~--~i~ayG~tgSGKTyTm 133 (378)
..++.++.|... |++-||+.|||||+-.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 345556666555 8999999999999544
No 254
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=41.90 E-value=21 Score=37.33 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=18.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.| +++..+||||||..
T Consensus 152 ip~il~g~d--viv~ApTGSGKTla 174 (518)
T PLN00206 152 IPAALSGRS--LLVSADTGSGKTAS 174 (518)
T ss_pred HHHHhcCCC--EEEEecCCCCccHH
Confidence 455678876 67888999999965
No 255
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=41.85 E-value=22 Score=39.22 Aligned_cols=35 Identities=23% Similarity=0.429 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.||.-. ......++ .|.|-||+.-|.+|||||.|.
T Consensus 68 HifaiA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 68 HIYSLA-QTAYRALLETRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred CHHHHH-HHHHHHHHHcCCCceEEEecCCCCCcHHHH
Confidence 456543 23333333 599999999999999999885
No 256
>KOG2373|consensus
Probab=41.59 E-value=24 Score=35.15 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=20.5
Q ss_pred HHHHHhhccCCc---ceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNG---TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~---~i~ayG~tgSGKTyTm~ 134 (378)
|.+...+.|.-- ||+ -|+||||||.-|.
T Consensus 261 pvLNk~LkGhR~GElTvl-TGpTGsGKTTFls 291 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVL-TGPTGSGKTTFLS 291 (514)
T ss_pred hHHHHHhccCCCCceEEE-ecCCCCCceeEeh
Confidence 667777877653 444 4999999997764
No 257
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=41.46 E-value=14 Score=40.31 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=27.6
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-HhhccC----CcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY----NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~----n~~i~ayG~tgSGKTyTm 133 (378)
.++|+.|-+.+..-+.+.+.+..|+-. .++... .-.|+-||++|+|||+.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~la 229 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLA 229 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHH
Confidence 356666655443334444433333221 122221 245889999999999664
No 258
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=41.38 E-value=22 Score=36.23 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..+..-+.+ ..-++.|-+|....-|-.|.-||||||.+.
T Consensus 29 Gr~~e~~~l-~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~ 67 (416)
T PF10923_consen 29 GREREIEAL-DRDLDRVADGGSSFKFIRGEYGSGKTFFLR 67 (416)
T ss_pred chHHHHHHH-HHHHHHHhCCCCeEEEEEeCCCCcHHHHHH
Confidence 333344443 344677889999999999999999999873
No 259
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.37 E-value=18 Score=35.66 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=17.8
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.++..+.. +.-|+-.|.+|+|||...
T Consensus 56 ~vl~~l~~--~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 56 AICAGFAY--DRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHHhc--CCcEEEEeCCCChHHHHH
Confidence 34444433 345888999999999554
No 260
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=41.29 E-value=18 Score=37.31 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=17.7
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
-.+-.|+| ++.||..|||||+..
T Consensus 193 iAAAGgHn--Ll~~GpPGtGKTmla 215 (490)
T COG0606 193 IAAAGGHN--LLLVGPPGTGKTMLA 215 (490)
T ss_pred HHHhcCCc--EEEecCCCCchHHhh
Confidence 33446777 678999999999765
No 261
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.21 E-value=16 Score=36.38 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.2
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
-.++-||+.|+|||.+.
T Consensus 39 h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIA 55 (363)
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35789999999999755
No 262
>PRK07261 topology modulation protein; Provisional
Probab=41.13 E-value=12 Score=32.94 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=11.5
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||.-
T Consensus 3 i~i~G~~GsGKSTl 16 (171)
T PRK07261 3 IAIIGYSGSGKSTL 16 (171)
T ss_pred EEEEcCCCCCHHHH
Confidence 56789999999943
No 263
>KOG0340|consensus
Probab=40.60 E-value=16 Score=36.28 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=23.5
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEeccc
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
..+|..+|+|.+| +-...||||||..+-.+
T Consensus 35 ~~cIpkILeGrdc--ig~AkTGsGKT~AFaLP 64 (442)
T KOG0340|consen 35 QACIPKILEGRDC--IGCAKTGSGKTAAFALP 64 (442)
T ss_pred hhhhHHHhccccc--ccccccCCCcchhhhHH
Confidence 4567889999997 45679999999887553
No 264
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=40.55 E-value=18 Score=38.72 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=16.2
Q ss_pred HHhhccCCcceeeeccCCCCcceE
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
..++.|.++. ..++||||||.+
T Consensus 35 ~~il~g~dvl--v~apTGsGKTl~ 56 (607)
T PRK11057 35 DAVLSGRDCL--VVMPTGGGKSLC 56 (607)
T ss_pred HHHHcCCCEE--EEcCCCchHHHH
Confidence 3456788764 457999999964
No 265
>KOG0729|consensus
Probab=40.40 E-value=14 Score=35.42 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=14.4
Q ss_pred cCCc--ceeeeccCCCCcce
Q psy5719 114 GYNG--TIFAYGQTSSGKTH 131 (378)
Q Consensus 114 G~n~--~i~ayG~tgSGKTy 131 (378)
|..- -|+.||+.|+|||.
T Consensus 207 gidppkgvllygppgtgktl 226 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTL 226 (435)
T ss_pred CCCCCCceEEeCCCCCchhH
Confidence 5543 38999999999993
No 266
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=40.12 E-value=12 Score=39.21 Aligned_cols=93 Identities=18% Similarity=0.232 Sum_probs=52.3
Q ss_pred cceEecccCCCCCCCC-chhhhhhcccCcc---ccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccccccee
Q psy5719 129 KTHTMEGVMGDPNKQG-IIPHVLAGYNGTI---FAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEF 204 (378)
Q Consensus 129 KTyTm~G~~~~~~~~g-il~r~l~g~~~~i---~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~ 204 (378)
+.|-+.-.+.+..+|| -|....+|+.... .--|.|||||||||......-..+.++-....-|..++.......=-
T Consensus 3 ~~F~l~s~f~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~fFP 82 (663)
T COG0556 3 KPFKLHSPFKPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKEFFP 82 (663)
T ss_pred CceEeccCCCCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHHhCc
Confidence 4455554444443333 3555556665533 34799999999999776555555566655555565555432211111
Q ss_pred EEEEeeeeeeccccccccccc
Q psy5719 205 IIKVSYFEIYMDKIRDLLDVS 225 (378)
Q Consensus 205 ~V~vS~~EIYnE~i~DLL~~~ 225 (378)
.-.|- |--..||-..|.
T Consensus 83 ~NaVE----YFVSYYDYYQPE 99 (663)
T COG0556 83 ENAVE----YFVSYYDYYQPE 99 (663)
T ss_pred CcceE----EEeeeccccCcc
Confidence 11122 444679999875
No 267
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=40.05 E-value=21 Score=32.25 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=20.1
Q ss_pred HHHHHhhc-cCC--cceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GYN--GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~n--~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |.. ..+.-+|.+|||||...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 44677775 433 44789999999999554
No 268
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=39.63 E-value=10 Score=38.44 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.3
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 34688999999999776
No 269
>PRK06696 uridine kinase; Validated
Probab=39.53 E-value=27 Score=31.95 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=18.2
Q ss_pred HHHHHHhh---ccCCcceeeeccCCCCcceE
Q psy5719 105 KSIVSDVL---AGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 105 ~~lv~~~l---~G~n~~i~ayG~tgSGKTyT 132 (378)
..+.+.++ .+....|.--|.+|||||+.
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTl 38 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTF 38 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHH
Confidence 33444443 34455677779999999954
No 270
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=39.48 E-value=12 Score=32.19 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=10.7
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||+.
T Consensus 1 i~l~G~~GsGKSTl 14 (163)
T TIGR01313 1 FVLMGVAGSGKSTI 14 (163)
T ss_pred CEEECCCCCCHHHH
Confidence 34569999999943
No 271
>PRK10867 signal recognition particle protein; Provisional
Probab=39.48 E-value=31 Score=35.36 Aligned_cols=18 Identities=33% Similarity=0.410 Sum_probs=15.1
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|+..|.+|||||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456788899999999876
No 272
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=39.46 E-value=18 Score=39.14 Aligned_cols=44 Identities=18% Similarity=0.277 Sum_probs=29.1
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+.|+.+++.+..-+.+.+.+ .. +...+..|+-+|.+|||||+.-
T Consensus 373 ~~~~~liG~S~~~~~~~~~~-----~~-~a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQV-----EM-VAQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred ccccceeecCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCcCHHHHH
Confidence 45677777554444444443 21 3456778999999999999653
No 273
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=39.14 E-value=18 Score=37.84 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=29.3
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++||.+.+.+..=..+.+.+ .. +...+..|+-+|.+||||++.-
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~-----~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQA-----RK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred ccccccceeECCHHHHHHHHHH-----HH-HhCCCCCEEEECCCCccHHHHH
Confidence 3467788776543323333332 11 2346778999999999998765
No 274
>KOG0926|consensus
Probab=39.04 E-value=16 Score=40.01 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=16.1
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
.|-.++-+|+||||||.-+
T Consensus 270 ~n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQV 288 (1172)
T ss_pred cCCeEEEecCCCCCccccc
Confidence 4667888999999999766
No 275
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=39.02 E-value=11 Score=41.54 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.1
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
|..++..|.||||||++|.
T Consensus 430 n~n~~I~G~tGsGKS~~~~ 448 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFMQ 448 (797)
T ss_pred ccceEEEcCCCCCHHHHHH
Confidence 4567889999999999983
No 276
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=38.97 E-value=15 Score=36.21 Aligned_cols=43 Identities=16% Similarity=0.430 Sum_probs=28.3
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|-|..|.+ |+++ ...++-.+++..-+-++-.|.+|+|||..+.
T Consensus 1 ~pf~~ivg----q~~~----~~al~~~~~~~~~g~vli~G~~G~gKttl~r 43 (337)
T TIGR02030 1 FPFTAIVG----QDEM----KLALLLNVIDPKIGGVMVMGDRGTGKSTAVR 43 (337)
T ss_pred CCcccccc----HHHH----HHHHHHHhcCCCCCeEEEEcCCCCCHHHHHH
Confidence 34555554 4444 3445555666556668899999999997664
No 277
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=38.93 E-value=17 Score=35.25 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++..++.+. ..++-.|.||||||..|
T Consensus 134 ~~~l~~~v~~~-~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 134 KEFLRLAIASR-KNIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHHhhCC-CEEEEECCCCCCHHHHH
Confidence 44555555433 45677899999999765
No 278
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=38.93 E-value=24 Score=36.02 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..++..|++|+|||.|+.
T Consensus 224 ~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457778999999998873
No 279
>CHL00176 ftsH cell division protein; Validated
Probab=38.75 E-value=16 Score=39.35 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=28.0
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHH-hh----ccCCcceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSD-VL----AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~-~l----~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++|+.|.+.+...+++- .++..+-.. .+ ......|+-||++|+|||+..
T Consensus 178 ~~~~f~dv~G~~~~k~~l~-eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFE-EVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLA 233 (638)
T ss_pred CCCCHHhccChHHHHHHHH-HHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 3467787777554443332 222221110 11 111234899999999999775
No 280
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=38.56 E-value=18 Score=35.82 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=21.3
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++..++.+ ...|+-.|.||||||.++
T Consensus 167 ~~~~L~~~v~~-~~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAA-RLAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhC-CCeEEEECCCCCCHHHHH
Confidence 34555666654 367888999999999766
No 281
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=38.43 E-value=11 Score=35.98 Aligned_cols=21 Identities=24% Similarity=0.498 Sum_probs=18.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+...|+..|.+|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 478889999999999999655
No 282
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=38.37 E-value=26 Score=38.26 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=24.4
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+..|+..++.+... + |...+.+-+|.||||||-..+
T Consensus 200 n~~Q~~a~~~i~~~----~--~~~~~~Ll~GvTGSGKTEvYl 235 (730)
T COG1198 200 NQEQQAAVEAILSS----L--GGFAPFLLDGVTGSGKTEVYL 235 (730)
T ss_pred CHHHHHHHHHHHHh----c--ccccceeEeCCCCCcHHHHHH
Confidence 55677777665433 2 445566789999999995543
No 283
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=38.36 E-value=11 Score=42.24 Aligned_cols=20 Identities=30% Similarity=0.534 Sum_probs=17.2
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
.|+-.+-.|.||||||+++.
T Consensus 474 ~n~n~~I~G~TGSGKS~l~~ 493 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATLT 493 (893)
T ss_pred CcccEEEECCCCCCHHHHHH
Confidence 47778889999999999883
No 284
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.23 E-value=19 Score=37.55 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.2
Q ss_pred hhccCCc-ceeeeccCCCCcceEe
Q psy5719 111 VLAGYNG-TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~-~i~ayG~tgSGKTyTm 133 (378)
+-.|.-. .++-||+.|+|||.+.
T Consensus 29 ~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 29 FTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHcCCCCceEEEECCCCccHHHHH
Confidence 3345544 6899999999999653
No 285
>PF13173 AAA_14: AAA domain
Probab=38.15 E-value=12 Score=31.04 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.3
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.++-+|+.|+|||+.+.
T Consensus 4 ~~~l~G~R~vGKTtll~ 20 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLK 20 (128)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 46789999999998774
No 286
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=38.11 E-value=12 Score=35.73 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=14.0
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
.+|.-.|++|+|||.|+.
T Consensus 73 ~vi~l~G~~G~GKTTt~a 90 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIA 90 (272)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 455555999999998873
No 287
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=38.07 E-value=15 Score=31.96 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
++-+|.+|+|||..
T Consensus 2 ~li~G~~G~GKT~l 15 (187)
T cd01124 2 TLLSGGPGTGKTTF 15 (187)
T ss_pred EEEEcCCCCCHHHH
Confidence 56799999999953
No 288
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=38.07 E-value=11 Score=32.97 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=13.6
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+..+-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45567999999999655
No 289
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=38.05 E-value=20 Score=37.78 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=29.4
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.|+.+++.+..=+.+.+. +. -+...+..|+-+|.+||||++.-
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~-----i~-~~A~s~~pVLI~GE~GTGKe~~A 259 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQT-----IL-LYARSSAAVLIQGETGTGKELAA 259 (538)
T ss_pred ccchhheeeCCHHHHHHHHH-----HH-HHhCCCCcEEEECCCCCCHHHHH
Confidence 37788888755422223222 22 23567889999999999997543
No 290
>PRK10689 transcription-repair coupling factor; Provisional
Probab=38.05 E-value=28 Score=40.21 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=27.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
|.+...|++.+..+... .-.+...-++..|+||||||.+
T Consensus 599 ~~~T~~Q~~aI~~il~d----~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 599 FETTPDQAQAINAVLSD----MCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCCHHHHHHHHHHHHH----hhcCCCCCEEEEcCCCcCHHHH
Confidence 45777788777665433 2234445589999999999964
No 291
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=37.93 E-value=14 Score=32.47 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-+|.+|||||+.
T Consensus 2 I~i~G~pGsGKst~ 15 (194)
T cd01428 2 ILLLGPPGSGKGTQ 15 (194)
T ss_pred EEEECCCCCCHHHH
Confidence 67899999999943
No 292
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=37.87 E-value=17 Score=26.74 Aligned_cols=15 Identities=27% Similarity=0.461 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
.+-.|.+|||||.-|
T Consensus 26 tli~G~nGsGKSTll 40 (62)
T PF13555_consen 26 TLITGPNGSGKSTLL 40 (62)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999444
No 293
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=37.84 E-value=19 Score=37.85 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=30.1
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.|+.+++.+..=+.+.+. +.. +...+..|+-+|.+||||+..-
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~-----i~~-~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRAL-----VRL-YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred ccchhheeeCCHHHHHHHHH-----HHH-HhCCCCcEEEECCCCcCHHHHH
Confidence 48899888755422233322 222 3566889999999999998654
No 294
>KOG0739|consensus
Probab=37.81 E-value=14 Score=36.01 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=31.6
Q ss_pred cccccCCCCChHHHHHHHHHHH-HHHhhccCC---cceeeeccCCCCcceEe
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSI-VSDVLAGYN---GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~l-v~~~l~G~n---~~i~ayG~tgSGKTyTm 133 (378)
.+.|-+-+..-+.+=+.++.|+ ...+|.|.- ..|+-||+.|+||+|--
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLA 183 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLA 183 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHH
Confidence 3444444444555555555554 356777776 56999999999999864
No 295
>KOG0734|consensus
Probab=37.72 E-value=33 Score=36.15 Aligned_cols=59 Identities=25% Similarity=0.342 Sum_probs=39.2
Q ss_pred ceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 118 TIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
-|+-.|+.|+||| +|.|+..|--.--| |-|.|...+.--.|.=-|-+++||...+.
T Consensus 339 GVLLvGPPGTGKT--------------lLARAvAGEA~VPF----------F~~sGSEFdEm~VGvGArRVRdLF~aAk~ 394 (752)
T KOG0734|consen 339 GVLLVGPPGTGKT--------------LLARAVAGEAGVPF----------FYASGSEFDEMFVGVGARRVRDLFAAAKA 394 (752)
T ss_pred ceEEeCCCCCchh--------------HHHHHhhcccCCCe----------EeccccchhhhhhcccHHHHHHHHHHHHh
Confidence 3788999999999 55566554433332 23344444555568888899999988765
Q ss_pred ccc
Q psy5719 198 MDE 200 (378)
Q Consensus 198 ~~~ 200 (378)
+.+
T Consensus 395 ~AP 397 (752)
T KOG0734|consen 395 RAP 397 (752)
T ss_pred cCC
Confidence 443
No 296
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=37.40 E-value=18 Score=36.06 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHhhhhhhhhh
Q psy5719 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377 (378)
Q Consensus 342 s~Lg~vi~aL~~~~~~~~~~~~d~~~~~~~~~~~~~ 377 (378)
....+-+.++..+....+..+.+++.+.++.+++++
T Consensus 327 ~~~e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e 362 (373)
T COG5019 327 REKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLE 362 (373)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888888888899999999998888775
No 297
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=37.38 E-value=36 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=28.6
Q ss_pred HHHHHHH-HHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 97 EKVYDEA-AKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 97 ~~vf~~~-~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..-|+.. +..+++.+-+|.+-.++.+ .||||||||-+-
T Consensus 166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAia 204 (875)
T COG4096 166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAIA 204 (875)
T ss_pred chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHHH
Confidence 3445543 6788889999999966555 599999999753
No 298
>CHL00195 ycf46 Ycf46; Provisional
Probab=37.27 E-value=12 Score=38.88 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.4
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
-.|+-||++|+|||++.
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45899999999999654
No 299
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=37.24 E-value=29 Score=37.48 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+|.-. ......++ .+.|-||+--|.+|||||.|.
T Consensus 68 HifavA-~~Ay~~m~~~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 68 HIFAIA-DAAYQSLVTYNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cHHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence 466532 22233333 589999999999999999886
No 300
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=37.22 E-value=15 Score=36.16 Aligned_cols=20 Identities=30% Similarity=0.257 Sum_probs=17.1
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
+....|+-.|..|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 44567888999999999998
No 301
>PRK01172 ski2-like helicase; Provisional
Probab=37.17 E-value=23 Score=38.28 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
...-|.+++.. +++|.| ++..++||||||..
T Consensus 23 l~~~Q~~ai~~--------l~~~~n--vlv~apTGSGKTl~ 53 (674)
T PRK01172 23 LYDHQRMAIEQ--------LRKGEN--VIVSVPTAAGKTLI 53 (674)
T ss_pred CCHHHHHHHHH--------HhcCCc--EEEECCCCchHHHH
Confidence 34456666643 456766 57778999999964
No 302
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=37.12 E-value=27 Score=31.66 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=20.4
Q ss_pred HHHHHhhcc-C--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAG-Y--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G-~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.| . ...+.-+|.+|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 556777753 3 455778999999999654
No 303
>KOG0652|consensus
Probab=37.03 E-value=16 Score=34.99 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=11.9
Q ss_pred ceeeeccCCCCcc
Q psy5719 118 TIFAYGQTSSGKT 130 (378)
Q Consensus 118 ~i~ayG~tgSGKT 130 (378)
-++.||++|+|||
T Consensus 207 GvLmYGPPGTGKT 219 (424)
T KOG0652|consen 207 GVLMYGPPGTGKT 219 (424)
T ss_pred ceEeeCCCCCcHH
Confidence 3799999999999
No 304
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=37.02 E-value=33 Score=38.68 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=25.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+...|...... +..+.-.+...-++..|+||||||.+.
T Consensus 451 ~~T~~Q~~aI~~----I~~d~~~~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 451 EETPDQLKAIEE----IKADMESPRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred CCCHHHHHHHHH----HHhhhcccCcCCEEEECCCCccHHHHH
Confidence 345556554444 344444555556789999999999754
No 305
>PRK08118 topology modulation protein; Reviewed
Probab=37.02 E-value=15 Score=32.19 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=10.8
Q ss_pred eeeeccCCCCcc
Q psy5719 119 IFAYGQTSSGKT 130 (378)
Q Consensus 119 i~ayG~tgSGKT 130 (378)
|+-.|.+|||||
T Consensus 4 I~I~G~~GsGKS 15 (167)
T PRK08118 4 IILIGSGGSGKS 15 (167)
T ss_pred EEEECCCCCCHH
Confidence 677899999999
No 306
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=36.95 E-value=34 Score=34.96 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.8
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+-.|.+|+|||.|..
T Consensus 100 ~~vi~lvG~~GvGKTTtaa 118 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCT 118 (429)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568888999999998873
No 307
>PTZ00014 myosin-A; Provisional
Probab=36.88 E-value=30 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.424 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 99 VYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 99 vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
||.-. ......++ .+.|-||+.-|.+|||||.|.
T Consensus 166 ifavA-~~Ay~~m~~~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 166 VFTTA-RRALENLHGVKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred HHHHH-HHHHHHHHhcCCCceEEEEcCCCCCchHHH
Confidence 66543 33333333 589999999999999999664
No 308
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=36.63 E-value=34 Score=30.11 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.3
Q ss_pred ccCCcceeeeccCCCCcceE
Q psy5719 113 AGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyT 132 (378)
..++..|+-+|.+||||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 47789999999999999943
No 309
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=36.63 E-value=15 Score=35.29 Aligned_cols=15 Identities=27% Similarity=0.359 Sum_probs=13.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++-+|.+|||||+.-
T Consensus 61 vll~G~pGTGKT~lA 75 (284)
T TIGR02880 61 MSFTGNPGTGKTTVA 75 (284)
T ss_pred EEEEcCCCCCHHHHH
Confidence 778999999999754
No 310
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=36.30 E-value=26 Score=37.16 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=17.7
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++|.| +++-.+||+|||.+.
T Consensus 22 i~~il~g~d--vlv~~PTG~GKTl~y 45 (591)
T TIGR01389 22 ISHVLDGRD--VLVVMPTGGGKSLCY 45 (591)
T ss_pred HHHHHcCCC--EEEEcCCCccHhHHH
Confidence 334578887 466679999999763
No 311
>KOG3859|consensus
Probab=36.29 E-value=14 Score=35.57 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=20.7
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++-+|+.--|+|.|.||.|||.-|
T Consensus 36 sv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 36 SVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHhcCceEEEEEeccCCccHHHHH
Confidence 456799999999999999999654
No 312
>PRK04040 adenylate kinase; Provisional
Probab=36.26 E-value=16 Score=32.85 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.1
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-+|.+|||||+..
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999554
No 313
>KOG1514|consensus
Probab=36.23 E-value=24 Score=38.12 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=24.2
Q ss_pred HHHHhh--ccCCcceeeeccCCCCcceEecccCC
Q psy5719 107 IVSDVL--AGYNGTIFAYGQTSSGKTHTMEGVMG 138 (378)
Q Consensus 107 lv~~~l--~G~n~~i~ayG~tgSGKTyTm~G~~~ 138 (378)
.+..++ +|-.+|+.--|..|||||.|+.+...
T Consensus 411 f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~ 444 (767)
T KOG1514|consen 411 FLRSFISDQGLGSCMYISGVPGTGKTATVLEVMK 444 (767)
T ss_pred HHHhhcCCCCCceeEEEecCCCCCceehHHHHHH
Confidence 344444 36777888899999999999987644
No 314
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=36.09 E-value=23 Score=33.16 Aligned_cols=23 Identities=26% Similarity=0.599 Sum_probs=16.6
Q ss_pred HHHhhcc---CCcceeeeccCCCCcc
Q psy5719 108 VSDVLAG---YNGTIFAYGQTSSGKT 130 (378)
Q Consensus 108 v~~~l~G---~n~~i~ayG~tgSGKT 130 (378)
++.++.| .+..++-+|.+|||||
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT 37 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKT 37 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHH
Confidence 3444543 3466888999999999
No 315
>KOG0354|consensus
Probab=35.95 E-value=22 Score=38.63 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=26.7
Q ss_pred ccccCCCCChHHHHHH------HHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 87 DKVFKPNATQEKVYDE------AAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 87 D~Vf~~~~~Q~~vf~~------~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
++-+++++-|..+|-. .-..++..+| |.|+.| .-+||+||||-
T Consensus 44 ~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii--~lPTG~GKTfI 92 (746)
T KOG0354|consen 44 SHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTII--ALPTGSGKTFI 92 (746)
T ss_pred cCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEE--EeecCCCccch
Confidence 3344555555444432 2235567788 999755 45899999975
No 316
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=35.79 E-value=30 Score=37.25 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.++++.+...+ -+ +..+++-..||+|||+..
T Consensus 1 ~Q~~~~~~i~~al----~~--~~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 1 EQALFYLNCLTSL----RQ--KRIGMLEASTGVGKTLAM 33 (636)
T ss_pred CHHHHHHHHHHHH----hc--CCeEEEEcCCCCcHHHHH
Confidence 3778887754333 22 456889999999999665
No 317
>PRK08233 hypothetical protein; Provisional
Probab=35.75 E-value=16 Score=31.72 Aligned_cols=15 Identities=27% Similarity=0.228 Sum_probs=11.4
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.--|.+|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999543
No 318
>PRK14531 adenylate kinase; Provisional
Probab=35.73 E-value=16 Score=32.27 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+..|.+|||||+.
T Consensus 5 i~i~G~pGsGKsT~ 18 (183)
T PRK14531 5 LLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 77899999999943
No 319
>KOG4304|consensus
Probab=35.72 E-value=47 Score=31.41 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhh-hHHHHhh
Q psy5719 336 KANEVKVALEQQMDQLRDVHQKQVAELR-DEIADKQ 370 (378)
Q Consensus 336 ~IN~SLs~Lg~vi~aL~~~~~~~~~~~~-d~~~~~~ 370 (378)
-||+||..|...|-..-.....+++++. .+|+|.+
T Consensus 46 RIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILElt 81 (250)
T KOG4304|consen 46 RINRCLDELKDLIPEALKKDGQRHSKLEKADILELT 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Confidence 4999999999888555555555677775 6666643
No 320
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=35.68 E-value=37 Score=31.81 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=21.8
Q ss_pred HHHHHHHhhc--cCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLA--GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~--G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+.+.+.+ .....|.-+|..|+|||...
T Consensus 5 ~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 5 IEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 3445555555 56677889999999999554
No 321
>PRK06217 hypothetical protein; Validated
Probab=35.59 E-value=16 Score=32.27 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.3
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-.|.+|||||+
T Consensus 4 I~i~G~~GsGKST 16 (183)
T PRK06217 4 IHITGASGSGTTT 16 (183)
T ss_pred EEEECCCCCCHHH
Confidence 6778999999993
No 322
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.58 E-value=13 Score=40.68 Aligned_cols=18 Identities=39% Similarity=0.501 Sum_probs=15.2
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
.+|.-.|+||+|||.|+.
T Consensus 186 ~Vi~lVGpnGvGKTTTia 203 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTA 203 (767)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 467788999999999883
No 323
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.54 E-value=13 Score=37.57 Aligned_cols=19 Identities=42% Similarity=0.408 Sum_probs=15.3
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
-.++-.|++|+|||+|+..
T Consensus 207 ~ii~lvGptGvGKTTt~ak 225 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVK 225 (407)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3567789999999988843
No 324
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=35.14 E-value=15 Score=37.55 Aligned_cols=18 Identities=39% Similarity=0.451 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+..|.-.|.||+|||.|+
T Consensus 191 g~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTT 208 (420)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346778899999999988
No 325
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=34.98 E-value=43 Score=30.73 Aligned_cols=36 Identities=11% Similarity=0.057 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhc-cCCcceeeeccCCCCcceEe
Q psy5719 98 KVYDEAAKSIVSDVLA-GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 98 ~vf~~~~~~lv~~~l~-G~n~~i~ayG~tgSGKTyTm 133 (378)
.+|..++.-+..-+-. +..-.|.--|.+|||||+.+
T Consensus 14 ~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 14 AVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHH
Confidence 4454444333322222 33344555699999999654
No 326
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=34.85 E-value=28 Score=32.22 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=18.2
Q ss_pred HHHHHhhc-cC--CcceeeeccCCCCcc
Q psy5719 106 SIVSDVLA-GY--NGTIFAYGQTSSGKT 130 (378)
Q Consensus 106 ~lv~~~l~-G~--n~~i~ayG~tgSGKT 130 (378)
+-++.++. |. +.+++-+|.+|||||
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT 35 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKS 35 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHH
Confidence 33556554 43 466888999999999
No 327
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=34.85 E-value=20 Score=30.10 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=16.4
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
...+..|+-+|..||||++..
T Consensus 18 a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 18 AKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HCSSS-EEEECCTTSSHHHHH
T ss_pred hCCCCcEEEEcCCCCCHHHHH
Confidence 366777899999999999653
No 328
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=34.75 E-value=28 Score=33.57 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=19.4
Q ss_pred HHHHHhhccC---CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.|- ...+.-||.+|||||..+
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~ 112 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQIC 112 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455666643 455788999999999443
No 329
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=34.51 E-value=19 Score=29.84 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=11.0
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-.|++|||||.
T Consensus 2 I~i~G~~GsGKst 14 (147)
T cd02020 2 IAIDGPAGSGKST 14 (147)
T ss_pred EEEECCCCCCHHH
Confidence 5668999999994
No 330
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=34.31 E-value=21 Score=32.59 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=17.7
Q ss_pred HHHhhc-c--CCcceeeeccCCCCcc
Q psy5719 108 VSDVLA-G--YNGTIFAYGQTSSGKT 130 (378)
Q Consensus 108 v~~~l~-G--~n~~i~ayG~tgSGKT 130 (378)
++.++. | .+++++-.|.+|||||
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT 33 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKT 33 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcH
Confidence 455663 3 3577899999999999
No 331
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=34.21 E-value=26 Score=31.88 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=19.7
Q ss_pred HHHHHhhc-cC--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |. ..+++-+|.+|+|||...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34566664 43 466888999999999544
No 332
>KOG0742|consensus
Probab=34.20 E-value=19 Score=36.61 Aligned_cols=13 Identities=46% Similarity=0.838 Sum_probs=11.9
Q ss_pred ceeeeccCCCCcc
Q psy5719 118 TIFAYGQTSSGKT 130 (378)
Q Consensus 118 ~i~ayG~tgSGKT 130 (378)
.|+-||++|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4799999999999
No 333
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.10 E-value=27 Score=36.14 Aligned_cols=41 Identities=24% Similarity=0.302 Sum_probs=24.3
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
+||.|.+ |+.+ +..+...+-.|.- ..++-||++|+|||.+.
T Consensus 12 ~~~divG----q~~i----~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 12 TFSEVVG----QDHV----KKLIINALKKNSISHAYIFAGPRGTGKTTVA 53 (472)
T ss_pred CHHHccC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3566555 4444 2233333334443 34789999999999765
No 334
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.95 E-value=31 Score=34.03 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=18.6
Q ss_pred HHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
+...+-.|.- ..++-||+.|+|||++.
T Consensus 29 l~~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 29 LLNAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3333445543 36788999999999765
No 335
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=33.81 E-value=16 Score=27.47 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=11.9
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
++-+|..|+|||.+..
T Consensus 2 ~~~~g~~G~Gktt~~~ 17 (99)
T cd01983 2 IVVTGKGGVGKTTLAA 17 (99)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4566888999997753
No 336
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=33.68 E-value=15 Score=34.17 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.6
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
.+-..+|++|+|||.|+-
T Consensus 33 ~~~~~~GpagtGKtetik 50 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIK 50 (231)
T ss_dssp TEEEEESSTTSSHHHHHH
T ss_pred CCCCCcCCCCCCchhHHH
Confidence 344579999999999984
No 337
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=33.55 E-value=31 Score=33.55 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHHHHHHhhccC-CcceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGY-NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm 133 (378)
..|+.+.+.. ...+-.|. .-.++-||+.|+|||.+.
T Consensus 17 ig~~~~~~~l----~~~~~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 17 IGQEHIVQTL----KNAIKNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred cCcHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3455555443 22333454 335789999999999665
No 338
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=33.55 E-value=14 Score=33.60 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=13.7
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-.|.||||||.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999765
No 339
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=33.50 E-value=11 Score=34.70 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=10.4
Q ss_pred eccCCCCcceEe
Q psy5719 122 YGQTSSGKTHTM 133 (378)
Q Consensus 122 yG~tgSGKTyTm 133 (378)
-|.+|||||+++
T Consensus 5 ~G~sGSGKTTla 16 (220)
T cd02025 5 AGSVAVGKSTTA 16 (220)
T ss_pred eCCCCCCHHHHH
Confidence 399999999776
No 340
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=33.40 E-value=26 Score=35.85 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
.-++..|.||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 45789999999999877
No 341
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=33.26 E-value=14 Score=37.19 Aligned_cols=18 Identities=39% Similarity=0.588 Sum_probs=13.1
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
--++..|.||||||.+|.
T Consensus 16 ~~~li~G~~GsGKT~~i~ 33 (386)
T PF10412_consen 16 RHILIIGATGSGKTQAIR 33 (386)
T ss_dssp G-EEEEE-TTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 346789999999997664
No 342
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=33.17 E-value=19 Score=31.40 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=12.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+..|..|||||+..
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3567899999999543
No 343
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=33.07 E-value=37 Score=28.47 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=15.3
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
..|+-+|.-|||||+-+-|
T Consensus 16 ~vi~L~GdLGaGKTtf~r~ 34 (123)
T PF02367_consen 16 DVILLSGDLGAGKTTFVRG 34 (123)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 5688999999999966543
No 344
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.96 E-value=25 Score=37.89 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=14.4
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.++-||++|+|||.++.
T Consensus 112 illL~GP~GsGKTTl~~ 128 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIK 128 (637)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998763
No 345
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=32.96 E-value=15 Score=32.14 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=13.3
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-.|.+|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999666
No 346
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=32.88 E-value=19 Score=30.87 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=12.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-+|++|||||+..
T Consensus 2 iI~i~G~~GSGKstia 17 (171)
T TIGR02173 2 IITISGPPGSGKTTVA 17 (171)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3677899999999543
No 347
>PRK06762 hypothetical protein; Provisional
Probab=32.84 E-value=19 Score=30.98 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=11.4
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
+|.-.|.+|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 45667999999994
No 348
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=32.77 E-value=19 Score=30.76 Aligned_cols=14 Identities=36% Similarity=0.572 Sum_probs=11.4
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||+.
T Consensus 2 i~i~G~~GsGKSTl 15 (149)
T cd02027 2 IWLTGLSGSGKSTI 15 (149)
T ss_pred EEEEcCCCCCHHHH
Confidence 56779999999853
No 349
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=32.74 E-value=19 Score=39.69 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=13.5
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5778999999999654
No 350
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=32.73 E-value=18 Score=37.80 Aligned_cols=16 Identities=31% Similarity=0.557 Sum_probs=13.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-||++|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 4788999999999654
No 351
>KOG0745|consensus
Probab=32.47 E-value=21 Score=36.56 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=20.1
Q ss_pred cceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcc
Q psy5719 117 GTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTI 157 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i 157 (378)
+-|+..|+||||||+-- .-|.++|+.=|.-.
T Consensus 227 SNvLllGPtGsGKTlla----------qTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA----------QTLARVLDVPFAIC 257 (564)
T ss_pred ccEEEECCCCCchhHHH----------HHHHHHhCCCeEEe
Confidence 44778999999999532 23556665555433
No 352
>KOG0651|consensus
Probab=32.38 E-value=13 Score=36.44 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=34.6
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhc---cCCc--ceeeeccCCCCcceE
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA---GYNG--TIFAYGQTSSGKTHT 132 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~---G~n~--~i~ayG~tgSGKTyT 132 (378)
.+..++|+.|-+-.---.++-+.+..|+++..+- |... -+.-||+.|+|||+-
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTll 182 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLL 182 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHH
Confidence 4567888888774433345555556777766442 3322 267899999999964
No 353
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=32.18 E-value=23 Score=28.25 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+-.|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 567899999999443
No 354
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=32.17 E-value=23 Score=34.13 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=19.7
Q ss_pred HHHHHHhhcc---CCcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
..++..++.| .-..++.||..|+|||..+
T Consensus 62 ~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 62 QRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHHHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 3334445554 3356899999999999654
No 355
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=32.09 E-value=26 Score=37.44 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.1
Q ss_pred hhccCCc-ceeeeccCCCCcceEe
Q psy5719 111 VLAGYNG-TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~-~i~ayG~tgSGKTyTm 133 (378)
+-.|.-. .++-||+.|+|||.+.
T Consensus 40 ~~~gri~ha~L~~Gp~GvGKTt~A 63 (598)
T PRK09111 40 FETGRIAQAFMLTGVRGVGKTTTA 63 (598)
T ss_pred HHcCCCCceEEEECCCCCCHHHHH
Confidence 3355433 5888999999999765
No 356
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=32.03 E-value=60 Score=22.16 Aligned_cols=18 Identities=6% Similarity=0.124 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5719 337 ANEVKVALEQQMDQLRDV 354 (378)
Q Consensus 337 IN~SLs~Lg~vi~aL~~~ 354 (378)
-..||++||+++.-+-..
T Consensus 5 ~DLsLMvLGN~vTniln~ 22 (44)
T PF07208_consen 5 TDLSLMVLGNMVTNILNT 22 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhh
Confidence 468999999999776543
No 357
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=31.99 E-value=16 Score=29.82 Aligned_cols=16 Identities=25% Similarity=0.410 Sum_probs=12.7
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||.++
T Consensus 17 ~v~I~GpSGsGKSTLl 32 (107)
T cd00820 17 GVLITGDSGIGKTELA 32 (107)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999655
No 358
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.98 E-value=34 Score=34.46 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=14.9
Q ss_pred ccCCc-ceeeeccCCCCcceEe
Q psy5719 113 AGYNG-TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~-~i~ayG~tgSGKTyTm 133 (378)
.|.-. .++-||+.|+|||...
T Consensus 34 ~~~~~ha~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 34 MGRVGHGYIFSGLRGVGKTTAA 55 (397)
T ss_pred hCCcceeEEEECCCCCCHHHHH
Confidence 34433 3777999999999543
No 359
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=31.94 E-value=27 Score=37.47 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
.-++.+|.||||||.++
T Consensus 212 ~H~lv~ApTgsGKgvg~ 228 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV 228 (623)
T ss_pred ceEEEEeCCCCCcccee
Confidence 46899999999999876
No 360
>KOG0730|consensus
Probab=31.91 E-value=30 Score=37.10 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=32.9
Q ss_pred ceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 118 TIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
-|+.||+.|+|||. +.+++.....+-|.+= ..-.-++| ..|---+.+.++|+...+
T Consensus 470 GVLlyGPPGC~KT~--------------lAkalAne~~~nFlsv--kgpEL~sk--------~vGeSEr~ir~iF~kAR~ 525 (693)
T KOG0730|consen 470 GVLLYGPPGCGKTL--------------LAKALANEAGMNFLSV--KGPELFSK--------YVGESERAIREVFRKARQ 525 (693)
T ss_pred eEEEECCCCcchHH--------------HHHHHhhhhcCCeeec--cCHHHHHH--------hcCchHHHHHHHHHHHhh
Confidence 38999999999993 3344433222222110 00000111 235567899999998876
Q ss_pred ccc
Q psy5719 198 MDE 200 (378)
Q Consensus 198 ~~~ 200 (378)
..+
T Consensus 526 ~aP 528 (693)
T KOG0730|consen 526 VAP 528 (693)
T ss_pred cCC
Confidence 544
No 361
>KOG0328|consensus
Probab=31.87 E-value=36 Score=32.94 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.8
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..|..++.|.++ +|-.|+|+|||-|+
T Consensus 56 rAi~~IlkGrdV--iaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 56 RAIPQILKGRDV--IAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhhcccce--EEEecCCCCceEEE
Confidence 345668889885 78889999999776
No 362
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=31.77 E-value=17 Score=32.42 Aligned_cols=15 Identities=40% Similarity=0.364 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.-.|.+|||||++-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999653
No 363
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.70 E-value=16 Score=35.69 Aligned_cols=20 Identities=35% Similarity=0.468 Sum_probs=16.1
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
..-+|+-.|.||||||..|.
T Consensus 142 ~~~siii~G~t~sGKTt~ln 161 (312)
T COG0630 142 ARKSIIICGGTASGKTTLLN 161 (312)
T ss_pred cCCcEEEECCCCCCHHHHHH
Confidence 34457889999999998874
No 364
>KOG0735|consensus
Probab=31.58 E-value=20 Score=38.86 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.7
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
...-|+-||++|+||||-.
T Consensus 700 ~~~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 700 LRTGILLYGPPGCGKTLLA 718 (952)
T ss_pred cccceEEECCCCCcHHHHH
Confidence 3456899999999999865
No 365
>KOG0726|consensus
Probab=31.51 E-value=18 Score=35.25 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=15.8
Q ss_pred CCchhhhHHHHHhhhhccccc
Q psy5719 181 QGIIPRIVNDIFNHIYQMDEN 201 (378)
Q Consensus 181 ~Giipr~~~~lf~~l~~~~~~ 201 (378)
.|--|+.++.||+...+..+.
T Consensus 260 lGdGpklvRqlF~vA~e~apS 280 (440)
T KOG0726|consen 260 LGDGPKLVRELFRVAEEHAPS 280 (440)
T ss_pred hccchHHHHHHHHHHHhcCCc
Confidence 366699999999987765443
No 366
>PRK13531 regulatory ATPase RavA; Provisional
Probab=31.43 E-value=36 Score=35.46 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=19.3
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+.-++..++.|.+ |+-+|++|+|||+..
T Consensus 29 I~lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 29 IRLCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHHHccCCC--EEEECCCChhHHHHH
Confidence 4444555555544 677999999999654
No 367
>KOG1547|consensus
Probab=31.33 E-value=53 Score=31.13 Aligned_cols=21 Identities=33% Similarity=0.594 Sum_probs=18.5
Q ss_pred ccCCcceeeeccCCCCcceEec
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.|+.--||..||+|.||| ||.
T Consensus 43 ~GF~FNIMVVgqSglgks-tli 63 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKS-TLI 63 (336)
T ss_pred ccCceEEEEEecCCCCch-hhH
Confidence 699999999999999999 443
No 368
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=31.29 E-value=36 Score=33.02 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=19.0
Q ss_pred HHHHHhhccC---CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.|- ...+.-||.+|||||...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 3445556542 556778999999999443
No 369
>PRK14532 adenylate kinase; Provisional
Probab=31.16 E-value=22 Score=31.38 Aligned_cols=13 Identities=23% Similarity=0.636 Sum_probs=11.5
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-.|.+|||||.
T Consensus 3 i~~~G~pGsGKsT 15 (188)
T PRK14532 3 LILFGPPAAGKGT 15 (188)
T ss_pred EEEECCCCCCHHH
Confidence 7789999999993
No 370
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.13 E-value=29 Score=37.00 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=24.6
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCCc-ceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNG-TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~-~i~ayG~tgSGKTyTm 133 (378)
+||.|.+ |+.+.+.+ ...+-.|.-. .++-||+.|+|||.+.
T Consensus 11 ~f~eivG----q~~i~~~L----~~~i~~~r~~ha~Lf~Gp~G~GKTt~A 52 (584)
T PRK14952 11 TFAEVVG----QEHVTEPL----SSALDAGRINHAYLFSGPRGCGKTSSA 52 (584)
T ss_pred cHHHhcC----cHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3555554 55555542 2223344333 4688999999999665
No 371
>PRK13767 ATP-dependent helicase; Provisional
Probab=31.08 E-value=30 Score=38.74 Aligned_cols=22 Identities=32% Similarity=0.211 Sum_probs=16.4
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+++|.|+. .-.+||||||...
T Consensus 43 ~il~g~nvl--i~APTGSGKTlaa 64 (876)
T PRK13767 43 LIHEGKNVL--ISSPTGSGKTLAA 64 (876)
T ss_pred HHHcCCCEE--EECCCCCcHHHHH
Confidence 346788754 4679999999763
No 372
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=31.06 E-value=22 Score=36.20 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=14.7
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|+-+|+||+|||+..
T Consensus 108 ~~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLA 125 (412)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 356899999999999543
No 373
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.06 E-value=39 Score=33.04 Aligned_cols=30 Identities=30% Similarity=0.449 Sum_probs=23.7
Q ss_pred CCchhhhhhcccCccccccCCCCCCccccc
Q psy5719 143 QGIIPHVLAGYNGTIFAYGQTSSGKTHTME 172 (378)
Q Consensus 143 ~gil~r~l~g~~~~i~aygqtgsgKt~tm~ 172 (378)
|+++..+++.-.+-|..=|+|||||+.|+.
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 455666666667778889999999999974
No 374
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=31.05 E-value=1.7e+02 Score=22.81 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=29.7
Q ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Q psy5719 329 EKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEI 366 (378)
Q Consensus 329 ~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~ 366 (378)
-...|-..||.+|-+|-.|+..|-+....=+++++.=+
T Consensus 23 ~~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LL 60 (83)
T PF03670_consen 23 FDEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELL 60 (83)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34678899999999999999999887766555555433
No 375
>KOG0348|consensus
Probab=30.99 E-value=26 Score=36.74 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=18.0
Q ss_pred HHHHHhhccCCcceeeeccCCCCcce
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTy 131 (378)
..|..+++|.++.| -.|||||||-
T Consensus 166 q~IP~lL~grD~lV--~aQTGSGKTL 189 (708)
T KOG0348|consen 166 QAIPVLLEGRDALV--RAQTGSGKTL 189 (708)
T ss_pred cchhhhhcCcceEE--EcCCCCcccH
Confidence 34566788888755 5699999994
No 376
>KOG0987|consensus
Probab=30.98 E-value=38 Score=35.67 Aligned_cols=36 Identities=33% Similarity=0.593 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..|..||+.+ +..+.+..-..+| ||.-|+||||-.
T Consensus 119 ~~eqk~v~d~~----~~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYDAI----LEAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHHHH----HHHHhccccceee-eccCCccceeeH
Confidence 45688888833 3344555556667 999999999865
No 377
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=30.83 E-value=33 Score=31.17 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=18.2
Q ss_pred HHHHhhc-cC--CcceeeeccCCCCcceE
Q psy5719 107 IVSDVLA-GY--NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 107 lv~~~l~-G~--n~~i~ayG~tgSGKTyT 132 (378)
-++.++. |. ...++-+|.+|+|||.-
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTF 32 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 3566664 43 55677799999999843
No 378
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=30.80 E-value=14 Score=33.68 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|+.|||||.+|
T Consensus 28 ~~ivGpNGaGKSTll 42 (212)
T cd03274 28 SAIVGPNGSGKSNVI 42 (212)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999776
No 379
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=30.59 E-value=33 Score=30.00 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=21.1
Q ss_pred HHHHHhhc-cCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~n~~i~ayG~tgSGKTyTm 133 (378)
.++..++. .....|+..|..|||||.-+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 34556664 67778999999999999443
No 380
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=30.50 E-value=18 Score=39.67 Aligned_cols=18 Identities=39% Similarity=0.630 Sum_probs=16.2
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
|.-.+-.|.||||||+++
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 677888999999999988
No 381
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=30.11 E-value=35 Score=33.41 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=26.4
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
||.+.+.+..-..+.+.+ ..+ ...+.-|+-.|.+||||++.-
T Consensus 5 ~~~liG~S~~~~~~~~~i-----~~~-a~~~~pVlI~GE~GtGK~~lA 46 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQV-----SRL-APLDKPVLIIGERGTGKELIA 46 (326)
T ss_pred cCccEECCHHHHHHHHHH-----HHH-hCCCCCEEEECCCCCcHHHHH
Confidence 455666544444444442 222 255778899999999998654
No 382
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=30.05 E-value=31 Score=35.75 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=19.8
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcc
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKT 130 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKT 130 (378)
+=++.++.| .+.+++-+|.+|||||
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT 35 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKT 35 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHH
Confidence 345677764 4678999999999998
No 383
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=29.98 E-value=18 Score=32.29 Aligned_cols=15 Identities=40% Similarity=0.375 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.--|.+|||||+++
T Consensus 2 igi~G~~GsGKSTl~ 16 (198)
T cd02023 2 IGIAGGSGSGKTTVA 16 (198)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999765
No 384
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=29.90 E-value=26 Score=30.44 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|++|||||..
T Consensus 3 ii~l~G~~GsGKsTl 17 (180)
T TIGR03263 3 LIVISGPSGVGKSTL 17 (180)
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999953
No 385
>PHA01747 putative ATP-dependent protease
Probab=29.82 E-value=29 Score=34.83 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=24.6
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+-|+|+.-..+.|.-++=.|+.||||||+..
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f~ 208 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTFV 208 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHHH
Confidence 4577765556788888999999999998863
No 386
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=29.80 E-value=22 Score=36.42 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=15.4
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...++..|.+|+|||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 456888899999999886
No 387
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=29.73 E-value=35 Score=35.49 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcce
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKTy 131 (378)
+-++.++.| ...+++-+|.+|+|||.
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~ 46 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTL 46 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHH
Confidence 446667754 45778999999999994
No 388
>PRK03839 putative kinase; Provisional
Probab=29.66 E-value=23 Score=31.01 Aligned_cols=13 Identities=38% Similarity=0.440 Sum_probs=11.1
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-.|..|||||+
T Consensus 3 I~l~G~pGsGKsT 15 (180)
T PRK03839 3 IAITGTPGVGKTT 15 (180)
T ss_pred EEEECCCCCCHHH
Confidence 6678999999994
No 389
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=29.62 E-value=42 Score=32.75 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=19.4
Q ss_pred HHHHHHhhcc-C--CcceeeeccCCCCcce
Q psy5719 105 KSIVSDVLAG-Y--NGTIFAYGQTSSGKTH 131 (378)
Q Consensus 105 ~~lv~~~l~G-~--n~~i~ayG~tgSGKTy 131 (378)
-+-++.++.| . ...+.-||.+|||||.
T Consensus 82 ~~~LD~lLgGGi~~G~iteI~G~~GsGKTq 111 (313)
T TIGR02238 82 SQALDGILGGGIESMSITEVFGEFRCGKTQ 111 (313)
T ss_pred CHHHHHHhCCCCcCCeEEEEECCCCCCcCH
Confidence 3556777765 2 3456789999999993
No 390
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=29.44 E-value=26 Score=34.01 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|+||||||-
T Consensus 6 ii~I~GpTasGKS~ 19 (300)
T PRK14729 6 IVFIFGPTAVGKSN 19 (300)
T ss_pred EEEEECCCccCHHH
Confidence 57888999999994
No 391
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=29.39 E-value=28 Score=25.56 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=10.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.-.|..|||||...
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999998443
No 392
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=29.29 E-value=24 Score=37.97 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=17.1
Q ss_pred CcceeeeccCCCCcceEeccc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G~ 136 (378)
.+-++..|..|||||.||..-
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~r 34 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNK 34 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHH
Confidence 456788999999999999544
No 393
>KOG0728|consensus
Probab=29.24 E-value=30 Score=33.01 Aligned_cols=28 Identities=25% Similarity=0.523 Sum_probs=21.4
Q ss_pred cceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 117 GTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
--++-||+.|+||| ++.|+..-+.+|.|
T Consensus 182 KGvlLygppgtGkt--------------LlaraVahht~c~f 209 (404)
T KOG0728|consen 182 KGVLLYGPPGTGKT--------------LLARAVAHHTDCTF 209 (404)
T ss_pred cceEEecCCCCchh--------------HHHHHHHhhcceEE
Confidence 44889999999999 56666666666665
No 394
>PHA02774 E1; Provisional
Probab=28.91 E-value=36 Score=36.21 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=18.9
Q ss_pred HHHhhccC--CcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~--n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|. ..|++-||++|+||||--
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~fa 451 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMFC 451 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 44455543 358999999999999654
No 395
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=28.79 E-value=28 Score=39.49 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=20.1
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.|..++.+.+. ++-.|..|+||||+|-
T Consensus 354 Av~~il~s~~v-~vv~G~AGTGKTT~l~ 380 (988)
T PRK13889 354 ALAHVTDGRDL-GVVVGYAGTGKSAMLG 380 (988)
T ss_pred HHHHHhcCCCe-EEEEeCCCCCHHHHHH
Confidence 35556777664 4588999999998863
No 396
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=28.78 E-value=25 Score=35.81 Aligned_cols=17 Identities=41% Similarity=0.489 Sum_probs=14.6
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.|+-+|+||+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 56899999999999654
No 397
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=28.56 E-value=35 Score=32.62 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.0
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..+.-+|.+|||||..+
T Consensus 112 ~~~~i~g~~g~GKttl~ 128 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLL 128 (270)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 45778999999999665
No 398
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=28.56 E-value=43 Score=34.40 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=24.6
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
+||.|++ |+.+ +..+...+-.|.- -.++-||+.|+|||.+.
T Consensus 15 ~~~diiG----q~~~----v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A 56 (451)
T PRK06305 15 TFSEILG----QDAV----VAVLKNALRFNRAAHAYLFSGIRGTGKTTLA 56 (451)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCceEEEEEcCCCCCHHHHH
Confidence 4567665 3333 2333333334543 34677999999999665
No 399
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=28.42 E-value=49 Score=36.76 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=18.8
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+++.+-++ ..|+..|+||||||..+
T Consensus 11 ~~i~~~l~~~--~~vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 11 PELLTALKTA--PQVLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHHhC--CCEEEEcCCCCCHHHHH
Confidence 4455555443 34778999999999765
No 400
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=28.28 E-value=39 Score=35.37 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=19.7
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..|..++.|.+ |++..+||||||...
T Consensus 58 ~~IP~~l~g~D--vi~~A~TGsGKT~Af 83 (513)
T COG0513 58 AAIPLILAGRD--VLGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 44566778854 688999999998654
No 401
>KOG0741|consensus
Probab=28.17 E-value=29 Score=36.46 Aligned_cols=13 Identities=46% Similarity=0.805 Sum_probs=12.1
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-||++|+|||-
T Consensus 259 iLLyGPPGTGKTL 271 (744)
T KOG0741|consen 259 ILLYGPPGTGKTL 271 (744)
T ss_pred EEEECCCCCChhH
Confidence 8899999999994
No 402
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=28.08 E-value=55 Score=36.08 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.0
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.++-+|+||+|||+..
T Consensus 489 ~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57899999999999775
No 403
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=28.01 E-value=21 Score=39.74 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=15.6
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
|.-.+-.|.||||||+++.
T Consensus 449 N~N~~I~G~sGsGKS~l~k 467 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLIQ 467 (844)
T ss_pred cccEEEEcCCCCCHHHHHH
Confidence 4457788999999999883
No 404
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=28.00 E-value=45 Score=36.50 Aligned_cols=17 Identities=35% Similarity=0.509 Sum_probs=14.3
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.++-+|+||+|||++.
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 45788999999999765
No 405
>PRK14530 adenylate kinase; Provisional
Probab=27.94 E-value=26 Score=31.84 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.8
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|.+|||||.
T Consensus 5 ~I~i~G~pGsGKsT 18 (215)
T PRK14530 5 RILLLGAPGAGKGT 18 (215)
T ss_pred EEEEECCCCCCHHH
Confidence 46779999999994
No 406
>PRK06851 hypothetical protein; Provisional
Probab=27.73 E-value=26 Score=35.10 Aligned_cols=27 Identities=22% Similarity=0.416 Sum_probs=21.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+.++.+.+-.++--|.+|+|||++|-
T Consensus 22 ~~~~~~~~~~~~il~G~pGtGKStl~~ 48 (367)
T PRK06851 22 YDSIIDGANRIFILKGGPGTGKSTLMK 48 (367)
T ss_pred hhhhccccceEEEEECCCCCCHHHHHH
Confidence 344556777778899999999998884
No 407
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=27.69 E-value=37 Score=36.64 Aligned_cols=49 Identities=31% Similarity=0.387 Sum_probs=35.6
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
+.|....=|.|.-.|...|+.++ ..+-+|.... +.+|.+||||++++..
T Consensus 3 ~~~~~~~~~~~~~~Q~~ai~~l~----~~~~~~~~~~-ll~Gl~gs~ka~lia~ 51 (652)
T PRK05298 3 KPFKLVSPYKPAGDQPQAIEELV----EGIEAGEKHQ-TLLGVTGSGKTFTMAN 51 (652)
T ss_pred CCcccccCCCCChHHHHHHHHHH----HhhhcCCCcE-EEEcCCCcHHHHHHHH
Confidence 56777778999999999888653 3334453222 4789999999998754
No 408
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=27.68 E-value=17 Score=40.31 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.7
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
-.+-.|+||||||++|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4567899999999888
No 409
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=27.62 E-value=44 Score=32.85 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=21.4
Q ss_pred HHHHHHHhhc--cC--CcceeeeccCCCCcceE
Q psy5719 104 AKSIVSDVLA--GY--NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 104 ~~~lv~~~l~--G~--n~~i~ayG~tgSGKTyT 132 (378)
..+-++.++. |. ...+.-||++|||||..
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtL 71 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTL 71 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCCCCHHHH
Confidence 4566777876 44 34578999999999943
No 410
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.61 E-value=37 Score=35.54 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=22.5
Q ss_pred CChHHHHHHHHHHHHHHhhccC-CcceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGY-NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm 133 (378)
..|+.+... +...+..|. .-.++-+|+.|+|||.+.
T Consensus 24 iGq~~vv~~----L~~ai~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 24 QGQEVLVKV----LSYTILNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred cCcHHHHHH----HHHHHHcCCCCceEEEECCCCCCHHHHH
Confidence 345555543 222233444 246889999999999775
No 411
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=27.48 E-value=33 Score=31.71 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=11.9
Q ss_pred eeccCCCCcceEec
Q psy5719 121 AYGQTSSGKTHTME 134 (378)
Q Consensus 121 ayG~tgSGKTyTm~ 134 (378)
-.|+.|+|||.|++
T Consensus 35 LLGPNGAGKTT~Fy 48 (243)
T COG1137 35 LLGPNGAGKTTTFY 48 (243)
T ss_pred EECCCCCCceeEEE
Confidence 46999999998874
No 412
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=27.32 E-value=53 Score=34.19 Aligned_cols=19 Identities=21% Similarity=0.518 Sum_probs=15.3
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
-.++-.|++|||||+.+-+
T Consensus 33 Eiv~L~G~SGsGKSTLLr~ 51 (504)
T TIGR03238 33 SLLFLCGSSGDGKSEILAE 51 (504)
T ss_pred CEEEEECCCCCCHHHHHhc
Confidence 4467789999999987763
No 413
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=27.14 E-value=38 Score=36.71 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=16.7
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
+.+.-++..|.||||||..+
T Consensus 137 ~~~~hvlviApTgSGKgvg~ 156 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV 156 (670)
T ss_pred CCCceEEEEecCCCCceeee
Confidence 44556899999999999777
No 414
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=27.10 E-value=27 Score=32.50 Aligned_cols=15 Identities=27% Similarity=0.308 Sum_probs=12.4
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|+-.|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 678899999999543
No 415
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=27.09 E-value=35 Score=35.29 Aligned_cols=50 Identities=14% Similarity=0.228 Sum_probs=27.7
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHH-hhc----cCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSD-VLA----GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~-~l~----G~n~~i~ayG~tgSGKTyTm 133 (378)
.+|+.+-+-+...+.+-+.+..|+... .+. .....++-||+.|+|||+.-
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lA 293 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLA 293 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHH
Confidence 344554443333444444443333322 222 44557999999999999654
No 416
>PRK09401 reverse gyrase; Reviewed
Probab=27.09 E-value=40 Score=39.08 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.|.. +.++||||||..
T Consensus 89 i~~il~g~dv~--i~ApTGsGKT~f 111 (1176)
T PRK09401 89 AKRLLLGESFA--IIAPTGVGKTTF 111 (1176)
T ss_pred HHHHHCCCcEE--EEcCCCCCHHHH
Confidence 44567887764 456999999953
No 417
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=27.07 E-value=33 Score=37.66 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=18.6
Q ss_pred HHhhccCCcceeeeccCCCCcceEecc
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
..++.+ +..++-.|..|+||||+|..
T Consensus 362 ~~i~~s-~~~~il~G~aGTGKTtll~~ 387 (744)
T TIGR02768 362 RHVTGS-GDIAVVVGRAGTGKSTMLKA 387 (744)
T ss_pred HHHhcC-CCEEEEEecCCCCHHHHHHH
Confidence 334544 34567889999999988854
No 418
>PTZ00301 uridine kinase; Provisional
Probab=27.02 E-value=21 Score=32.71 Aligned_cols=13 Identities=31% Similarity=0.319 Sum_probs=10.1
Q ss_pred eeeccCCCCcceE
Q psy5719 120 FAYGQTSSGKTHT 132 (378)
Q Consensus 120 ~ayG~tgSGKTyT 132 (378)
---|.+|||||+.
T Consensus 7 gIaG~SgSGKTTl 19 (210)
T PTZ00301 7 GISGASGSGKSSL 19 (210)
T ss_pred EEECCCcCCHHHH
Confidence 3459999999954
No 419
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=26.98 E-value=22 Score=35.22 Aligned_cols=15 Identities=20% Similarity=0.510 Sum_probs=12.3
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||.++
T Consensus 32 ~vllGPSGcGKSTlL 46 (338)
T COG3839 32 VVLLGPSGCGKSTLL 46 (338)
T ss_pred EEEECCCCCCHHHHH
Confidence 345699999999887
No 420
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=26.89 E-value=27 Score=33.25 Aligned_cols=15 Identities=33% Similarity=0.450 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+..|.+|||||+-
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 577899999999944
No 421
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.77 E-value=23 Score=37.28 Aligned_cols=18 Identities=44% Similarity=0.619 Sum_probs=14.1
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..|.-.|.+|+|||+|+.
T Consensus 351 ~vIaLVGPtGvGKTTtaa 368 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIA 368 (559)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 455566999999998873
No 422
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=26.76 E-value=47 Score=35.55 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=16.9
Q ss_pred HhhccCCc-ceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNG-TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~-~i~ayG~tgSGKTyTm 133 (378)
.+-.|.-. +++-||+.|+|||.++
T Consensus 31 aI~~~rl~hA~Lf~GP~GvGKTTlA 55 (605)
T PRK05896 31 AILNNKLTHAYIFSGPRGIGKTSIA 55 (605)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHH
Confidence 33344333 5889999999999665
No 423
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=26.63 E-value=31 Score=27.53 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999999544
No 424
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=26.61 E-value=39 Score=36.22 Aligned_cols=20 Identities=15% Similarity=0.174 Sum_probs=16.7
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
..+..|+-+|.+||||++.-
T Consensus 346 ~~~~pvli~Ge~GtGK~~~A 365 (638)
T PRK11388 346 KSSFPVLLCGEEGVGKALLA 365 (638)
T ss_pred CcCCCEEEECCCCcCHHHHH
Confidence 46777999999999998654
No 425
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=26.59 E-value=38 Score=35.29 Aligned_cols=42 Identities=14% Similarity=0.206 Sum_probs=27.3
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|+.+.+.+..=+.+++.+ .. +...+..|+-+|.+||||++.-
T Consensus 186 ~~~iig~s~~~~~~~~~i-----~~-~a~~~~pVlI~Ge~GtGK~~~A 227 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEI-----EV-VAASDLNVLILGETGVGKELVA 227 (509)
T ss_pred CCceeecCHHHHHHHHHH-----HH-HhCCCCcEEEECCCCccHHHHH
Confidence 455665444334444443 22 3466889999999999998654
No 426
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.52 E-value=37 Score=36.40 Aligned_cols=41 Identities=20% Similarity=0.196 Sum_probs=24.9
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
+||.|.+ |+.+...+ ...+-.|.- -.++-||..|+|||.+.
T Consensus 14 ~f~dviG----Qe~vv~~L----~~~l~~~rl~ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 14 SFSEMVG----QEHVVQAL----TNALTQQRLHHAYLFTGTRGVGKTTVS 55 (618)
T ss_pred CHHHhcC----cHHHHHHH----HHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4566664 55555432 222233433 34688999999999765
No 427
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=26.37 E-value=39 Score=36.41 Aligned_cols=18 Identities=11% Similarity=0.137 Sum_probs=15.2
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+.-++.+|.||||||..+
T Consensus 224 ~~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSV 241 (641)
T ss_pred CceEEEEeCCCCCccceE
Confidence 345799999999999876
No 428
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=26.37 E-value=15 Score=41.20 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=11.9
Q ss_pred ccCCCCcceEeccc
Q psy5719 123 GQTSSGKTHTMEGV 136 (378)
Q Consensus 123 G~tgSGKTyTm~G~ 136 (378)
=.||||||||+.++
T Consensus 66 M~TGtGKT~~~~~~ 79 (986)
T PRK15483 66 METGTGKTYVYTRL 79 (986)
T ss_pred eCCCCCHHHHHHHH
Confidence 47999999988776
No 429
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=26.36 E-value=32 Score=29.00 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=10.4
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|.-.|+||||||.
T Consensus 2 i~i~GpsGsGKst 14 (137)
T cd00071 2 IVLSGPSGVGKST 14 (137)
T ss_pred EEEECCCCCCHHH
Confidence 3456999999994
No 430
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=26.35 E-value=23 Score=37.71 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=14.5
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
...+-.|..|||||||+.
T Consensus 161 ~~~vitGgpGTGKTt~v~ 178 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVA 178 (586)
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 445668999999999974
No 431
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=26.33 E-value=2.7e+02 Score=23.67 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHhhh
Q psy5719 4 RKRYQYEALETALKEAKEG-AMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIK 61 (378)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (378)
+.+++.+.++.....+++. +..+|+.....+-+..+......+...-+....++.+++
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777766 555555554444333333333333333333334444433
No 432
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=26.28 E-value=32 Score=27.93 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=12.4
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.-.|.+|||||..+
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999655
No 433
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=26.27 E-value=33 Score=32.37 Aligned_cols=15 Identities=27% Similarity=0.381 Sum_probs=13.2
Q ss_pred CcceeeeccCCCCcc
Q psy5719 116 NGTIFAYGQTSSGKT 130 (378)
Q Consensus 116 n~~i~ayG~tgSGKT 130 (378)
..+++-+|.+|+|||
T Consensus 36 gs~~lI~G~pGtGKT 50 (259)
T TIGR03878 36 YSVINITGVSDTGKS 50 (259)
T ss_pred CcEEEEEcCCCCCHH
Confidence 466888999999999
No 434
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=26.26 E-value=47 Score=32.97 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=20.8
Q ss_pred HHHHHHHhhcc---CCcceeeeccCCCCcce
Q psy5719 104 AKSIVSDVLAG---YNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 104 ~~~lv~~~l~G---~n~~i~ayG~tgSGKTy 131 (378)
.-+-++.++.| ......-||.+|||||.
T Consensus 111 G~~~LD~lLgGGi~~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 111 GSQALDELLGGGIETRCITEAFGEFRSGKTQ 141 (344)
T ss_pred CcHhHHhhcCCCCCCCeEEEEecCCCCChhH
Confidence 45668888875 23446789999999993
No 435
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=26.09 E-value=29 Score=31.30 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=11.2
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-.|.+|||||.
T Consensus 2 I~i~G~pGsGKsT 14 (210)
T TIGR01351 2 LVLLGPPGSGKGT 14 (210)
T ss_pred EEEECCCCCCHHH
Confidence 6779999999983
No 436
>PRK00300 gmk guanylate kinase; Provisional
Probab=26.00 E-value=34 Score=30.44 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=12.7
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|.-.|++|||||..
T Consensus 6 ~~i~i~G~sGsGKstl 21 (205)
T PRK00300 6 LLIVLSGPSGAGKSTL 21 (205)
T ss_pred CEEEEECCCCCCHHHH
Confidence 4567789999999943
No 437
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=25.99 E-value=30 Score=35.38 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=16.1
Q ss_pred ccCCcceeeeccCCCCcceEecc
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.++| ++-.|++|+||||.-.+
T Consensus 208 ~~~N--li~lGp~GTGKThla~~ 228 (449)
T TIGR02688 208 PNYN--LIELGPKGTGKSYIYNN 228 (449)
T ss_pred cCCc--EEEECCCCCCHHHHHHH
Confidence 4555 56689999999987654
No 438
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=25.97 E-value=59 Score=34.97 Aligned_cols=42 Identities=14% Similarity=0.320 Sum_probs=28.4
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|-|..|.+ |+.+- ..++-.++++..+-|+-+|..|+|||...
T Consensus 1 ~pf~~ivG----q~~~~----~al~~~av~~~~g~vli~G~~GtgKs~la 42 (633)
T TIGR02442 1 FPFTAIVG----QEDLK----LALLLNAVDPRIGGVLIRGEKGTAKSTAA 42 (633)
T ss_pred CCcchhcC----hHHHH----HHHHHHhhCCCCCeEEEEcCCCCcHHHHH
Confidence 45666666 55544 44445555655566999999999999544
No 439
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=25.93 E-value=23 Score=30.68 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=12.1
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|.+|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999775
No 440
>PTZ00110 helicase; Provisional
Probab=25.91 E-value=45 Score=35.14 Aligned_cols=24 Identities=29% Similarity=0.327 Sum_probs=18.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+. ++.++||||||.+.
T Consensus 161 ip~~l~G~dv--I~~ApTGSGKTlay 184 (545)
T PTZ00110 161 WPIALSGRDM--IGIAETGSGKTLAF 184 (545)
T ss_pred HHHHhcCCCE--EEEeCCCChHHHHH
Confidence 4456788875 56789999999763
No 441
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=25.88 E-value=21 Score=39.42 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
.+-.+-+|+||||||+++.
T Consensus 426 ~g~~~I~G~tGsGKS~l~~ 444 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLMT 444 (789)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3457789999999998873
No 442
>PRK09354 recA recombinase A; Provisional
Probab=25.81 E-value=50 Score=32.85 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=21.4
Q ss_pred HHHHHHHhhc-c-C--CcceeeeccCCCCcceE
Q psy5719 104 AKSIVSDVLA-G-Y--NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 104 ~~~lv~~~l~-G-~--n~~i~ayG~tgSGKTyT 132 (378)
..+-++.+|. | + ...+.-||++|||||.-
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtL 76 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTL 76 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHH
Confidence 4566777777 3 3 34678999999999954
No 443
>KOG0924|consensus
Probab=25.81 E-value=66 Score=34.94 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=17.3
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
+.|-+|+-.|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 67888999999999999654
No 444
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=25.70 E-value=32 Score=33.62 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.1
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++..++||||||...
T Consensus 2 vvi~apTGsGKT~~~ 16 (358)
T TIGR01587 2 LVIEAPTGYGKTEAA 16 (358)
T ss_pred EEEEeCCCCCHHHHH
Confidence 567799999999653
No 445
>PRK14527 adenylate kinase; Provisional
Probab=25.64 E-value=33 Score=30.39 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=13.3
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
-.|+-.|.+|||||..
T Consensus 7 ~~i~i~G~pGsGKsT~ 22 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQ 22 (191)
T ss_pred cEEEEECCCCCCHHHH
Confidence 4588899999999953
No 446
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=25.55 E-value=44 Score=35.78 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.6
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
.-++..|.||||||..+
T Consensus 159 ~hvLviapTgSGKg~g~ 175 (606)
T PRK13897 159 QHALLFAPTGSGKGVGF 175 (606)
T ss_pred ceEEEEcCCCCCcceEE
Confidence 35789999999999876
No 447
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=25.30 E-value=31 Score=35.31 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.8
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
.-|+-+|+||+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35788999999999553
No 448
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=25.17 E-value=30 Score=30.95 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=10.3
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
.+-.|..||||||.+
T Consensus 3 ~~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 3 YLITGKPGSGKSYYA 17 (193)
T ss_dssp EEEE--TTSSHHHHH
T ss_pred EEEEcCCCCcHhHHH
Confidence 356799999999765
No 449
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=25.14 E-value=67 Score=32.12 Aligned_cols=16 Identities=50% Similarity=0.810 Sum_probs=13.8
Q ss_pred ccccccCCCCCCcccc
Q psy5719 156 TIFAYGQTSSGKTHTM 171 (378)
Q Consensus 156 ~i~aygqtgsgKt~tm 171 (378)
.++-||.+|+|||.++
T Consensus 44 n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 44 NIIIYGPTGTGKTATV 59 (366)
T ss_pred cEEEECCCCCCHhHHH
Confidence 4788999999999865
No 450
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.13 E-value=40 Score=36.54 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=24.4
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccC-CcceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGY-NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm 133 (378)
+||.|.+ |+.+ ++.+...+-.|. .-.++-||..|+|||.+.
T Consensus 13 tFddVIG----Qe~v----v~~L~~aI~~grl~HAyLF~GPpGvGKTTlA 54 (702)
T PRK14960 13 NFNELVG----QNHV----SRALSSALERGRLHHAYLFTGTRGVGKTTIA 54 (702)
T ss_pred CHHHhcC----cHHH----HHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 4566665 4444 223333333443 345788999999999654
No 451
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=25.12 E-value=26 Score=33.03 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
-++++|....+.. ..+-+. .-....|+-.|.||+|||.++
T Consensus 9 ~~~~~~~~~~~~~-~~~~~~--~~~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 9 FPDAAQTKALELE-AKGKEE--LDFSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CcHHHHHHHHHHH-HHhhhh--ccCCeEEEEECCCCCcHHHHH
Confidence 4456665555443 222221 234567888999999999776
No 452
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=25.11 E-value=34 Score=31.78 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=11.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 456899999999653
No 453
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.98 E-value=33 Score=30.57 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=10.5
Q ss_pred eeeeccCCCCcc
Q psy5719 119 IFAYGQTSSGKT 130 (378)
Q Consensus 119 i~ayG~tgSGKT 130 (378)
|+-.|++|||||
T Consensus 3 iiilG~pGaGK~ 14 (178)
T COG0563 3 ILILGPPGAGKS 14 (178)
T ss_pred EEEECCCCCCHH
Confidence 566899999998
No 454
>KOG0330|consensus
Probab=24.77 E-value=39 Score=34.11 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=29.5
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhh---cccCcccc
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLA---GYNGTIFA 159 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~---g~~~~i~a 159 (378)
.|..++.|.++ ++..+||||||-+.. -|||++.|+ -||++|.+
T Consensus 91 aiP~~L~g~dv--IglAeTGSGKT~afa--------LPIl~~LL~~p~~~~~lVLt 136 (476)
T KOG0330|consen 91 AIPVALGGRDV--IGLAETGSGKTGAFA--------LPILQRLLQEPKLFFALVLT 136 (476)
T ss_pred hcchhhCCCcE--EEEeccCCCchhhhH--------HHHHHHHHcCCCCceEEEec
Confidence 34567888885 556799999995542 367777774 46666654
No 455
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=24.69 E-value=32 Score=30.41 Aligned_cols=15 Identities=33% Similarity=0.324 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|.--|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 455699999999654
No 456
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=24.43 E-value=25 Score=37.24 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=13.3
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
-++.+|.||||||..|
T Consensus 178 h~li~G~tGsGKs~~i 193 (566)
T TIGR02759 178 HILIHGTTGSGKSVAI 193 (566)
T ss_pred ceEEEcCCCCCHHHHH
Confidence 4688999999999654
No 457
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=24.29 E-value=36 Score=29.70 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=12.6
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||..
T Consensus 4 ~i~l~G~~gsGKst~ 18 (175)
T cd00227 4 IIILNGGSSAGKSSI 18 (175)
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999943
No 458
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=24.24 E-value=28 Score=31.56 Aligned_cols=17 Identities=29% Similarity=0.601 Sum_probs=13.3
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..+.-.|++|||||..|
T Consensus 29 ~~~~i~G~NGsGKSTll 45 (213)
T cd03279 29 GLFLICGPTGAGKSTIL 45 (213)
T ss_pred CEEEEECCCCCCHHHHH
Confidence 34567899999999665
No 459
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=24.19 E-value=29 Score=38.77 Aligned_cols=18 Identities=33% Similarity=0.704 Sum_probs=15.2
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
++-.+..|+||||||+.+
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 444688999999999887
No 460
>PLN02200 adenylate kinase family protein
Probab=24.19 E-value=34 Score=31.85 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=12.8
Q ss_pred cceeeeccCCCCcce
Q psy5719 117 GTIFAYGQTSSGKTH 131 (378)
Q Consensus 117 ~~i~ayG~tgSGKTy 131 (378)
..|+-.|.+|||||.
T Consensus 44 ~ii~I~G~PGSGKsT 58 (234)
T PLN02200 44 FITFVLGGPGSGKGT 58 (234)
T ss_pred EEEEEECCCCCCHHH
Confidence 457889999999994
No 461
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=24.18 E-value=33 Score=30.90 Aligned_cols=15 Identities=40% Similarity=0.337 Sum_probs=11.8
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|.+|||||+.
T Consensus 8 vi~I~G~sGsGKSTl 22 (207)
T TIGR00235 8 IIGIGGGSGSGKTTV 22 (207)
T ss_pred EEEEECCCCCCHHHH
Confidence 455679999999944
No 462
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=24.15 E-value=33 Score=37.55 Aligned_cols=50 Identities=8% Similarity=0.212 Sum_probs=27.5
Q ss_pred EecccccCCCCChHHHHHHHHHHHH-HHhhccC----CcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIV-SDVLAGY----NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~G~----n~~i~ayG~tgSGKTyTm 133 (378)
.+|+.|-+.+...+.+-+.+..|+- ..++..+ ...|+-||++|+|||+..
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 3556665555444444444333322 1233322 234778999999999654
No 463
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.10 E-value=36 Score=31.80 Aligned_cols=18 Identities=22% Similarity=0.457 Sum_probs=13.9
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+-.+.-+|.+|||||.-+
T Consensus 30 Ge~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 30 GERVLLIGPNGSGKSTLL 47 (235)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346778999999999443
No 464
>KOG4348|consensus
Probab=23.84 E-value=2e+02 Score=29.51 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHhh--hhHHhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHhhhcce
Q psy5719 6 RYQYEALETALKEAKEG--AMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEAV 64 (378)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (378)
....+.|.+..-++.-. +||+.--..++.|-..|.|+ -..|-+++.|++.||.++
T Consensus 568 k~s~delr~qi~el~~ive~lk~~~~kel~kl~~dleee----k~mr~~lemei~~lkka~ 624 (627)
T KOG4348|consen 568 KNSLDELRAQIIELLCIVEALKKDHGKELEKLRKDLEEE----KTMRSNLEMEIEKLKKAV 624 (627)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHhhHHHHHHHh
Confidence 33444455544444444 44444333444455555555 778899999999999765
No 465
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=23.77 E-value=46 Score=35.88 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+.-++++|.||||||..+
T Consensus 175 ~~HvlviapTgSGKgvg~ 192 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGL 192 (636)
T ss_pred CceEEEEecCCCCCceEE
Confidence 345899999999999877
No 466
>KOG2228|consensus
Probab=23.76 E-value=1.2e+02 Score=30.37 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.7
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEeccc
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~ 136 (378)
|+-...|..++.-+ =+.++.|..-.++--|+.|||||+-+.-.
T Consensus 27 ~g~~~~~~~l~~~l----kqt~~~gEsnsviiigprgsgkT~li~~~ 69 (408)
T KOG2228|consen 27 FGVQDEQKHLSELL----KQTILHGESNSVIIIGPRGSGKTILIDTR 69 (408)
T ss_pred eehHHHHHHHHHHH----HHHHHhcCCCceEEEccCCCCceEeeHHH
Confidence 45556677776543 23467888888999999999999887543
No 467
>PRK10865 protein disaggregation chaperone; Provisional
Probab=23.75 E-value=74 Score=35.60 Aligned_cols=32 Identities=19% Similarity=0.272 Sum_probs=21.0
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
+..+++-+.......++-+|.+|+|||+..-|
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~ 218 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG 218 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHH
Confidence 34444433344444567889999999988765
No 468
>KOG2655|consensus
Probab=23.62 E-value=48 Score=33.14 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.3
Q ss_pred hhccCCcceeeeccCCCCcceE
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+-.|+.-++|..|..|+|||.-
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTf 37 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTF 37 (366)
T ss_pred HhcCCceEEEEecCCCccHHHH
Confidence 4579999999999999999853
No 469
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=23.61 E-value=37 Score=31.66 Aligned_cols=14 Identities=29% Similarity=0.515 Sum_probs=10.9
Q ss_pred eeeccCCCCcceEe
Q psy5719 120 FAYGQTSSGKTHTM 133 (378)
Q Consensus 120 ~ayG~tgSGKTyTm 133 (378)
.-.|++|||||.-+
T Consensus 32 ~iiGpSGSGKSTlL 45 (240)
T COG1126 32 VIIGPSGSGKSTLL 45 (240)
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999544
No 470
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=23.59 E-value=38 Score=31.57 Aligned_cols=15 Identities=27% Similarity=0.488 Sum_probs=11.6
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||.-|
T Consensus 34 vaI~GpSGSGKSTLL 48 (226)
T COG1136 34 VAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEECCCCCCHHHHH
Confidence 355799999999544
No 471
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=23.58 E-value=37 Score=33.07 Aligned_cols=14 Identities=50% Similarity=0.617 Sum_probs=12.0
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|+||||||.
T Consensus 6 ~i~i~GptgsGKt~ 19 (307)
T PRK00091 6 VIVIVGPTASGKTA 19 (307)
T ss_pred EEEEECCCCcCHHH
Confidence 47788999999993
No 472
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=23.56 E-value=26 Score=30.44 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=10.2
Q ss_pred eccCCCCcceEe
Q psy5719 122 YGQTSSGKTHTM 133 (378)
Q Consensus 122 yG~tgSGKTyTm 133 (378)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 489999999766
No 473
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.55 E-value=59 Score=33.81 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
.|+.+... +...+-.|.- -.++-||+.|+|||.+.
T Consensus 22 GQe~iv~~----L~~~i~~~ri~ha~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 22 HQDLAIGA----LQNALKSGKIGHAYIFFGPRGVGKTTIA 57 (484)
T ss_pred ChHHHHHH----HHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 45555543 2333334442 35799999999999665
No 474
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=23.36 E-value=41 Score=30.36 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
..+-+|++|||||--+
T Consensus 26 ~~~i~G~NGsGKS~il 41 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNIL 41 (220)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEEcCCCCCHHHHH
Confidence 4567899999999433
No 475
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=23.29 E-value=39 Score=33.50 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 104 AKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 104 ~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+.+.++......+. +.-.|.||||||+++.
T Consensus 130 ~~~~~~~~~~~~~~-ivl~G~TGsGKT~iL~ 159 (345)
T PRK11784 130 VIDTLEEAPAQFPL-VVLGGNTGSGKTELLQ 159 (345)
T ss_pred hHHHHhhhcccCce-EecCCCCcccHHHHHH
Confidence 33444433333333 4567899999998774
No 476
>PRK14528 adenylate kinase; Provisional
Probab=23.20 E-value=36 Score=30.22 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=11.9
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||+.
T Consensus 4 i~i~G~pGsGKtt~ 17 (186)
T PRK14528 4 IIFMGPPGAGKGTQ 17 (186)
T ss_pred EEEECCCCCCHHHH
Confidence 67799999999954
No 477
>PRK00279 adk adenylate kinase; Reviewed
Probab=23.19 E-value=39 Score=30.59 Aligned_cols=13 Identities=23% Similarity=0.488 Sum_probs=11.6
Q ss_pred eeeeccCCCCcce
Q psy5719 119 IFAYGQTSSGKTH 131 (378)
Q Consensus 119 i~ayG~tgSGKTy 131 (378)
|+-+|.+|||||.
T Consensus 3 I~v~G~pGsGKsT 15 (215)
T PRK00279 3 LILLGPPGAGKGT 15 (215)
T ss_pred EEEECCCCCCHHH
Confidence 7789999999994
No 478
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.16 E-value=70 Score=35.03 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=24.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
|-..|++... .++.-+..+....++-||.+|+|||....|
T Consensus 183 ~~igr~~ei~----~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 183 PLIGREDELE----RTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred cccCcHHHHH----HHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 3334544444 344333344455678899999999977654
No 479
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=23.14 E-value=29 Score=38.62 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.0
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
|.-.+..|+||||||+.|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 666788999999999887
No 480
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=23.08 E-value=49 Score=36.79 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=17.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.+- ++.--+||||||..
T Consensus 24 i~~il~G~~~-v~~~apTGSGKTaa 47 (844)
T TIGR02621 24 AERFVAGQPP-ESCSTPTGLGKTSI 47 (844)
T ss_pred HHHHHcCCCc-ceEecCCCCcccHH
Confidence 4446788753 55567999999974
No 481
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=23.08 E-value=30 Score=33.04 Aligned_cols=18 Identities=44% Similarity=0.499 Sum_probs=15.0
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
-.+.-+|++|+|||.++.
T Consensus 76 ~~i~~~G~~g~GKTtl~~ 93 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLA 93 (270)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467888999999997764
No 482
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=23.04 E-value=58 Score=28.63 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=17.6
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+...+.| -+++-.|++|.|||..+
T Consensus 29 l~~~l~~--k~~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 29 LKELLKG--KTSVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHTT--SEEEEECSTTSSHHHHH
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHH
Confidence 3455666 56677899999999554
No 483
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=22.66 E-value=40 Score=32.53 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|+||||||.-
T Consensus 2 i~i~G~t~~GKs~l 15 (287)
T TIGR00174 2 IFIMGPTAVGKSQL 15 (287)
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999943
No 484
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=22.64 E-value=81 Score=35.28 Aligned_cols=17 Identities=35% Similarity=0.571 Sum_probs=14.4
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
++++-.|+||+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999765
No 485
>PTZ00035 Rad51 protein; Provisional
Probab=22.64 E-value=65 Score=31.78 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=21.8
Q ss_pred HHHHHHHhhccC---CcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
.-+-++.+|.|- ...+.-+|.+|||||.-+
T Consensus 103 G~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 103 GSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 456678888752 455778999999999443
No 486
>KOG1970|consensus
Probab=22.60 E-value=35 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-.|++|+|||.|+
T Consensus 112 iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 112 ILLLTGPSGCGKSTTV 127 (634)
T ss_pred EEEEeCCCCCCchhHH
Confidence 3566799999999987
No 487
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=22.58 E-value=46 Score=34.77 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-||+.|+|||.+.
T Consensus 38 a~Lf~GppGtGKTTlA 53 (504)
T PRK14963 38 AYLFSGPRGVGKTTTA 53 (504)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3589999999999665
No 488
>PRK01184 hypothetical protein; Provisional
Probab=22.53 E-value=37 Score=29.70 Aligned_cols=14 Identities=36% Similarity=0.349 Sum_probs=11.8
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|..|||||+
T Consensus 3 ~i~l~G~~GsGKsT 16 (184)
T PRK01184 3 IIGVVGMPGSGKGE 16 (184)
T ss_pred EEEEECCCCCCHHH
Confidence 36678999999995
No 489
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=22.51 E-value=39 Score=33.42 Aligned_cols=45 Identities=18% Similarity=0.311 Sum_probs=30.2
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 87 DKVFKPNATQEKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 87 D~Vf~~~~~Q~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
-.|=..+.++.+-=...+..+|+.+| .|+. .|-||..|.|||+-+
T Consensus 61 ~~v~a~~~~~~eWdrs~~P~lId~~fr~g~~--~~~~gdsg~GKttll 106 (402)
T COG3598 61 IQVQAEAMRLSEWDRSNSPQLIDEFFRKGYV--SILYGDSGVGKTTLL 106 (402)
T ss_pred eEehhhhcChhhcCcccChhhhhHHhhcCee--EEEecCCcccHhHHH
Confidence 36666666665543445666777766 4554 577999999999764
No 490
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=22.49 E-value=41 Score=32.84 Aligned_cols=16 Identities=44% Similarity=0.449 Sum_probs=13.0
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-+|+|+||||..-
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4678999999999543
No 491
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=22.49 E-value=54 Score=35.52 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=16.2
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
-+.-++++|.||||||..+
T Consensus 143 g~~hvLviApTrSGKgvg~ 161 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGL 161 (663)
T ss_pred CCceEEEEecCCCCcceeE
Confidence 3567899999999999766
No 492
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=22.32 E-value=30 Score=30.00 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=11.1
Q ss_pred eeeccCCCCcceEe
Q psy5719 120 FAYGQTSSGKTHTM 133 (378)
Q Consensus 120 ~ayG~tgSGKTyTm 133 (378)
.-.|.+|||||..+
T Consensus 3 ~i~G~~gsGKTtl~ 16 (155)
T TIGR00176 3 QIVGPKNSGKTTLI 16 (155)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999765
No 493
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=22.24 E-value=44 Score=30.87 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.2
Q ss_pred CcceeeeccCCCCcceE
Q psy5719 116 NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyT 132 (378)
+.+++-+|.+|+|||..
T Consensus 24 g~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 24 GSLILIEGDESTGKSIL 40 (230)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 34788899999999965
No 494
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=22.22 E-value=48 Score=36.53 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=13.8
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
-.++-||..|+|||.+.
T Consensus 39 HAyLFtGPpGvGKTTlA 55 (830)
T PRK07003 39 HAYLFTGTRGVGKTTLS 55 (830)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678999999999754
No 495
>KOG0344|consensus
Probab=22.09 E-value=42 Score=35.37 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=17.6
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+.-++.+.+ ++|+++||||||+..
T Consensus 166 aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 166 AIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhcccc--eEEeccCCCcchhhh
Confidence 3344444444 699999999998765
No 496
>PRK04296 thymidine kinase; Provisional
Probab=22.07 E-value=25 Score=31.45 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=14.6
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
.++-+|..|+|||..+.+
T Consensus 4 i~litG~~GsGKTT~~l~ 21 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQ 21 (190)
T ss_pred EEEEECCCCCHHHHHHHH
Confidence 467799999999977665
No 497
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=22.01 E-value=43 Score=27.95 Aligned_cols=15 Identities=20% Similarity=0.366 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
|..+|.+|+|||.-+
T Consensus 3 i~~~G~~~~GKTsl~ 17 (164)
T cd04139 3 VIVVGAGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999443
No 498
>KOG0925|consensus
Probab=21.91 E-value=47 Score=34.54 Aligned_cols=20 Identities=40% Similarity=0.436 Sum_probs=17.6
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
+.|.+|.--|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 67899999999999999655
No 499
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=21.85 E-value=71 Score=35.67 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.3
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
++++-+|+||+|||++.
T Consensus 596 ~~~Lf~Gp~GvGKt~lA 612 (852)
T TIGR03346 596 GSFLFLGPTGVGKTELA 612 (852)
T ss_pred eEEEEEcCCCCCHHHHH
Confidence 56778899999999765
No 500
>PRK02496 adk adenylate kinase; Provisional
Probab=21.84 E-value=44 Score=29.31 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=11.3
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|.+|||||..
T Consensus 4 i~i~G~pGsGKst~ 17 (184)
T PRK02496 4 LIFLGPPGAGKGTQ 17 (184)
T ss_pred EEEECCCCCCHHHH
Confidence 56689999999943
Done!