Query psy5719
Match_columns 378
No_of_seqs 345 out of 1755
Neff 7.5
Searched_HMMs 29240
Date Sat Aug 17 00:52:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4etp_A Kinesin-like protein KA 100.0 4.5E-61 1.6E-65 478.5 12.2 302 8-367 4-354 (403)
2 3u06_A Protein claret segregat 100.0 1.9E-60 6.5E-65 474.2 12.2 297 9-367 5-339 (412)
3 2y65_A Kinesin, kinesin heavy 100.0 6E-61 2.1E-65 471.3 5.9 235 80-367 49-290 (365)
4 1bg2_A Kinesin; motor protein, 100.0 3.1E-61 1.1E-65 467.2 3.6 234 80-367 42-282 (325)
5 1t5c_A CENP-E protein, centrom 100.0 2.6E-60 9.1E-65 464.5 3.3 255 58-367 4-287 (349)
6 3bfn_A Kinesin-like protein KI 100.0 5E-60 1.7E-64 466.7 4.8 255 57-367 20-304 (388)
7 3b6u_A Kinesin-like protein KI 100.0 5.7E-60 2E-64 464.7 5.1 236 79-367 65-310 (372)
8 2vvg_A Kinesin-2; motor protei 100.0 4.7E-60 1.6E-64 462.6 4.3 231 80-367 54-292 (350)
9 2zfi_A Kinesin-like protein KI 100.0 2.1E-59 7.2E-64 461.2 8.9 237 79-367 45-311 (366)
10 3lre_A Kinesin-like protein KI 100.0 6.2E-60 2.1E-64 463.2 4.5 233 80-367 70-312 (355)
11 1goj_A Kinesin, kinesin heavy 100.0 2.6E-59 9E-64 458.4 7.0 236 80-367 45-287 (355)
12 1v8k_A Kinesin-like protein KI 100.0 4.9E-60 1.7E-64 469.4 1.4 273 39-367 49-358 (410)
13 4a14_A Kinesin, kinesin-like p 100.0 3.4E-59 1.2E-63 456.7 4.7 261 58-367 11-303 (344)
14 2heh_A KIF2C protein; kinesin, 100.0 1.8E-59 6.1E-64 462.6 1.2 271 41-367 31-338 (387)
15 2h58_A Kinesin-like protein KI 100.0 9.9E-59 3.4E-63 450.5 5.8 252 58-367 4-285 (330)
16 3cob_A Kinesin heavy chain-lik 100.0 4.9E-59 1.7E-63 458.0 3.0 230 80-367 45-284 (369)
17 3gbj_A KIF13B protein; kinesin 100.0 9.8E-59 3.3E-63 454.5 4.4 235 79-367 48-307 (354)
18 3nwn_A Kinesin-like protein KI 100.0 2.4E-58 8.2E-63 452.0 6.9 255 58-367 24-316 (359)
19 2wbe_C Bipolar kinesin KRP-130 100.0 4.5E-58 1.5E-62 452.5 8.4 243 79-367 64-318 (373)
20 2rep_A Kinesin-like protein KI 100.0 3E-58 1E-62 453.5 6.3 235 81-367 82-333 (376)
21 1x88_A Kinesin-like protein KI 100.0 1.1E-58 3.9E-63 454.9 2.7 240 81-367 54-307 (359)
22 3t0q_A AGR253WP; kinesin, alph 100.0 7.6E-58 2.6E-62 447.7 6.7 229 81-367 52-301 (349)
23 2nr8_A Kinesin-like protein KI 100.0 9E-58 3.1E-62 447.7 6.8 232 81-367 70-315 (358)
24 2owm_A Nckin3-434, related to 100.0 4E-58 1.4E-62 461.3 4.0 234 80-367 94-372 (443)
25 1f9v_A Kinesin-like protein KA 100.0 7.3E-58 2.5E-62 447.2 4.2 230 80-367 50-298 (347)
26 1ry6_A Internal kinesin; kines 100.0 8.2E-57 2.8E-61 441.2 5.4 232 81-367 49-288 (360)
27 3dc4_A Kinesin-like protein NO 100.0 2E-56 6.9E-61 436.0 4.3 249 56-367 20-292 (344)
28 4h1g_A Maltose binding protein 100.0 4.6E-52 1.6E-56 442.9 7.2 230 79-367 427-668 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 3.7E-26 1.3E-30 212.6 7.8 160 43-265 5-185 (298)
30 2rep_A Kinesin-like protein KI 98.8 2.1E-09 7.1E-14 105.7 3.2 70 128-200 82-159 (376)
31 4a14_A Kinesin, kinesin-like p 98.7 2.1E-09 7.1E-14 104.7 1.6 75 126-201 47-130 (344)
32 2y65_A Kinesin, kinesin heavy 98.7 3E-09 1E-13 104.2 2.6 77 128-208 50-135 (365)
33 1bg2_A Kinesin; motor protein, 98.7 6.1E-09 2.1E-13 100.5 2.4 70 128-201 43-121 (325)
34 3nwn_A Kinesin-like protein KI 98.6 3.2E-09 1.1E-13 103.8 0.2 69 128-201 71-148 (359)
35 2vvg_A Kinesin-2; motor protei 98.6 6E-09 2.1E-13 101.5 2.0 68 126-200 53-129 (350)
36 2h58_A Kinesin-like protein KI 98.6 7.7E-09 2.6E-13 100.0 2.7 70 125-201 44-121 (330)
37 3cob_A Kinesin heavy chain-lik 98.6 6.9E-09 2.4E-13 101.7 2.4 78 125-209 43-128 (369)
38 1t5c_A CENP-E protein, centrom 98.6 5.6E-09 1.9E-13 101.7 1.7 69 126-201 41-118 (349)
39 2wbe_C Bipolar kinesin KRP-130 98.6 8.3E-09 2.8E-13 101.4 2.8 72 126-197 64-148 (373)
40 3b6u_A Kinesin-like protein KI 98.6 6.4E-09 2.2E-13 102.0 1.9 72 126-201 65-145 (372)
41 3bfn_A Kinesin-like protein KI 98.6 6.5E-09 2.2E-13 102.4 1.8 67 127-200 63-138 (388)
42 3lre_A Kinesin-like protein KI 98.6 9.5E-09 3.3E-13 100.3 1.5 73 128-207 71-152 (355)
43 3dc4_A Kinesin-like protein NO 98.6 1E-08 3.5E-13 99.6 1.1 71 127-198 59-138 (344)
44 1goj_A Kinesin, kinesin heavy 98.6 1.9E-08 6.4E-13 98.2 2.9 73 126-201 44-125 (355)
45 3u06_A Protein claret segregat 98.6 1E-08 3.4E-13 101.9 0.8 66 128-200 105-178 (412)
46 1v8k_A Kinesin-like protein KI 98.6 1.2E-08 4E-13 101.2 1.2 72 128-200 120-200 (410)
47 3gbj_A KIF13B protein; kinesin 98.5 1.2E-08 4E-13 99.7 0.8 67 126-199 48-131 (354)
48 2heh_A KIF2C protein; kinesin, 98.5 1.2E-08 4.2E-13 100.4 0.8 71 128-199 100-179 (387)
49 2nr8_A Kinesin-like protein KI 98.5 1.6E-08 5.5E-13 98.7 0.2 70 128-201 70-147 (358)
50 2owm_A Nckin3-434, related to 98.4 4.4E-08 1.5E-12 98.2 1.0 67 127-200 94-176 (443)
51 1x88_A Kinesin-like protein KI 98.2 1.2E-07 4.1E-12 92.7 -0.5 72 126-197 52-136 (359)
52 2zfi_A Kinesin-like protein KI 98.2 2.1E-07 7.1E-12 91.2 0.9 69 127-200 46-131 (366)
53 3t0q_A AGR253WP; kinesin, alph 98.1 6.2E-07 2.1E-11 87.3 2.2 64 128-200 52-123 (349)
54 1f9v_A Kinesin-like protein KA 98.0 1.1E-06 3.9E-11 85.4 1.3 68 124-200 47-122 (347)
55 4etp_A Kinesin-like protein KA 97.9 1.4E-06 4.7E-11 86.4 0.7 68 125-201 104-179 (403)
56 4etp_B Spindle POLE BODY-assoc 97.7 0.0004 1.4E-08 65.4 13.4 82 43-125 40-137 (333)
57 1ry6_A Internal kinesin; kines 97.7 6.2E-06 2.1E-10 80.5 -0.2 69 128-198 49-127 (360)
58 4h1g_A Maltose binding protein 97.6 7.9E-06 2.7E-10 86.8 -0.8 76 116-200 415-500 (715)
59 2kin_B Kinesin; motor protein, 97.5 1.5E-05 5.3E-10 63.3 0.4 33 334-367 1-33 (100)
60 3kin_B Kinesin heavy chain; mo 95.9 0.0017 5.9E-08 52.9 0.7 29 338-367 1-29 (117)
61 2o0a_A S.cerevisiae chromosome 94.5 0.0082 2.8E-07 56.0 0.8 37 129-165 57-104 (298)
62 3ec2_A DNA replication protein 94.2 0.01 3.6E-07 50.9 0.8 51 83-134 6-56 (180)
63 2w58_A DNAI, primosome compone 92.1 0.063 2.2E-06 46.7 2.4 51 83-134 21-72 (202)
64 2qgz_A Helicase loader, putati 91.7 0.06 2.1E-06 50.9 1.9 50 84-134 121-170 (308)
65 2r62_A Cell division protease 87.6 0.32 1.1E-05 44.1 3.3 51 82-133 6-61 (268)
66 3t15_A Ribulose bisphosphate c 87.0 0.27 9.2E-06 45.8 2.5 48 86-133 2-53 (293)
67 3te6_A Regulatory protein SIR3 86.5 0.26 8.8E-06 46.9 2.0 27 108-134 37-63 (318)
68 2bjv_A PSP operon transcriptio 86.5 0.29 9.8E-06 44.4 2.3 45 83-133 2-46 (265)
69 1jbk_A CLPB protein; beta barr 86.0 0.34 1.2E-05 40.5 2.3 30 105-134 32-61 (195)
70 1ixz_A ATP-dependent metallopr 85.9 0.18 6.3E-06 45.5 0.6 52 81-133 10-66 (254)
71 4b4t_M 26S protease regulatory 85.0 0.67 2.3E-05 46.0 4.2 91 84-198 178-273 (434)
72 1g8p_A Magnesium-chelatase 38 84.9 0.42 1.4E-05 44.9 2.6 45 81-133 18-62 (350)
73 4b4t_K 26S protease regulatory 84.6 0.76 2.6E-05 45.5 4.4 92 84-199 169-265 (428)
74 4b4t_J 26S protease regulatory 84.4 0.61 2.1E-05 45.8 3.6 92 84-199 145-241 (405)
75 2p65_A Hypothetical protein PF 84.2 0.38 1.3E-05 40.2 1.8 30 105-134 32-61 (187)
76 3cf0_A Transitional endoplasmi 83.7 0.37 1.3E-05 44.9 1.6 51 83-133 11-66 (301)
77 1l8q_A Chromosomal replication 82.4 0.65 2.2E-05 43.4 2.8 49 83-134 7-55 (324)
78 3h4m_A Proteasome-activating n 81.7 0.57 1.9E-05 42.7 2.1 51 83-133 13-68 (285)
79 3bos_A Putative DNA replicatio 81.7 0.96 3.3E-05 39.5 3.5 45 84-133 25-69 (242)
80 1iy2_A ATP-dependent metallopr 80.8 0.51 1.7E-05 43.2 1.4 51 82-133 35-90 (278)
81 4b4t_L 26S protease subunit RP 79.3 1.1 3.9E-05 44.3 3.5 91 84-198 178-273 (437)
82 2v1u_A Cell division control p 79.3 0.47 1.6E-05 44.9 0.6 45 88-133 16-61 (387)
83 1qde_A EIF4A, translation init 78.9 0.79 2.7E-05 40.1 2.0 23 108-132 45-67 (224)
84 1fnn_A CDC6P, cell division co 78.2 1.4 4.6E-05 41.8 3.5 39 94-133 20-61 (389)
85 1sxj_C Activator 1 40 kDa subu 77.9 1.1 3.9E-05 42.1 2.9 41 86-134 24-64 (340)
86 3uk6_A RUVB-like 2; hexameric 77.8 1.5 5.1E-05 41.4 3.7 47 83-134 40-88 (368)
87 2gxq_A Heat resistant RNA depe 77.6 0.9 3.1E-05 39.0 1.9 22 110-133 34-55 (207)
88 2chg_A Replication factor C sm 77.5 1.1 3.7E-05 38.3 2.4 21 113-133 35-55 (226)
89 3d8b_A Fidgetin-like protein 1 77.4 0.48 1.6E-05 45.4 0.0 50 84-133 81-134 (357)
90 1d2n_A N-ethylmaleimide-sensit 76.6 1.7 5.8E-05 39.4 3.6 21 113-133 61-81 (272)
91 3dkp_A Probable ATP-dependent 76.1 1 3.6E-05 40.0 1.9 24 108-133 60-83 (245)
92 4b4t_I 26S protease regulatory 76.0 2.9 9.8E-05 41.4 5.2 92 84-199 179-275 (437)
93 3b9p_A CG5977-PA, isoform A; A 75.9 0.87 3E-05 41.8 1.4 51 83-133 17-71 (297)
94 2kjq_A DNAA-related protein; s 75.5 0.91 3.1E-05 37.8 1.3 19 116-134 36-54 (149)
95 2z4s_A Chromosomal replication 75.2 1.4 4.6E-05 43.6 2.6 50 81-134 99-148 (440)
96 2qz4_A Paraplegin; AAA+, SPG7, 74.7 0.62 2.1E-05 41.7 0.0 19 115-133 38-56 (262)
97 1xwi_A SKD1 protein; VPS4B, AA 74.5 1 3.6E-05 42.4 1.6 50 84-133 9-62 (322)
98 1p9r_A General secretion pathw 73.7 1.1 3.9E-05 44.0 1.7 29 106-134 157-185 (418)
99 4b4t_H 26S protease regulatory 73.7 1.4 4.9E-05 43.9 2.4 92 84-199 206-302 (467)
100 2c9o_A RUVB-like 1; hexameric 73.3 1.5 5E-05 43.4 2.4 46 83-133 33-80 (456)
101 2x8a_A Nuclear valosin-contain 73.2 0.47 1.6E-05 43.8 -1.2 51 83-133 6-61 (274)
102 1vec_A ATP-dependent RNA helic 73.1 2 6.9E-05 36.8 3.0 23 109-133 35-57 (206)
103 1t6n_A Probable ATP-dependent 71.5 1.6 5.4E-05 38.0 1.9 23 109-133 46-68 (220)
104 3bor_A Human initiation factor 71.4 1.4 4.6E-05 39.2 1.5 24 108-133 61-84 (237)
105 3ly5_A ATP-dependent RNA helic 71.4 1.6 5.6E-05 39.5 2.0 23 109-133 86-108 (262)
106 1sxj_D Activator 1 41 kDa subu 71.3 1.3 4.5E-05 41.4 1.4 25 109-133 51-75 (353)
107 3syl_A Protein CBBX; photosynt 71.2 1.6 5.5E-05 40.1 2.0 19 115-133 66-84 (309)
108 2qby_B CDC6 homolog 3, cell di 70.3 2 6.9E-05 40.6 2.5 38 95-133 24-62 (384)
109 3jvv_A Twitching mobility prot 70.1 1.4 4.7E-05 42.5 1.2 27 108-134 115-141 (356)
110 3fmo_B ATP-dependent RNA helic 69.5 2.3 7.9E-05 39.4 2.7 26 108-133 123-148 (300)
111 1lv7_A FTSH; alpha/beta domain 69.3 1.1 3.7E-05 40.3 0.3 50 83-133 8-62 (257)
112 3b6e_A Interferon-induced heli 69.1 1.1 3.7E-05 38.6 0.3 35 90-134 32-66 (216)
113 2pl3_A Probable ATP-dependent 68.7 2.5 8.6E-05 37.1 2.7 23 109-133 57-79 (236)
114 2qby_A CDC6 homolog 1, cell di 68.5 1.4 4.9E-05 41.4 1.0 20 114-133 43-62 (386)
115 1u0j_A DNA replication protein 67.9 2.8 9.6E-05 38.7 2.8 29 105-133 90-121 (267)
116 3iuy_A Probable ATP-dependent 67.6 2.6 8.8E-05 36.9 2.5 24 108-133 51-74 (228)
117 3vfd_A Spastin; ATPase, microt 67.6 1.6 5.3E-05 42.1 1.1 53 81-133 109-165 (389)
118 1wrb_A DJVLGB; RNA helicase, D 67.2 2.8 9.6E-05 37.3 2.7 23 109-133 55-77 (253)
119 3eie_A Vacuolar protein sortin 65.9 1.7 5.8E-05 40.7 0.9 51 83-133 14-68 (322)
120 2qp9_X Vacuolar protein sortin 65.1 2.1 7.1E-05 40.9 1.4 51 83-133 47-101 (355)
121 3fmp_B ATP-dependent RNA helic 64.8 3.1 0.00011 40.8 2.7 25 108-132 123-147 (479)
122 2eyu_A Twitching motility prot 64.4 2.1 7.1E-05 39.2 1.2 19 115-133 24-42 (261)
123 2oxc_A Probable ATP-dependent 64.0 3.6 0.00012 36.1 2.7 21 110-132 57-77 (230)
124 3ber_A Probable ATP-dependent 63.7 3.6 0.00012 36.9 2.7 23 109-133 75-97 (249)
125 3fe2_A Probable ATP-dependent 63.6 3.3 0.00011 36.7 2.3 23 109-133 61-83 (242)
126 1ofh_A ATP-dependent HSL prote 63.0 3.1 0.00011 37.9 2.2 18 116-133 50-67 (310)
127 1tue_A Replication protein E1; 62.9 2.3 8E-05 37.8 1.2 27 108-134 48-76 (212)
128 3eiq_A Eukaryotic initiation f 62.9 3.8 0.00013 38.9 2.8 25 107-133 70-94 (414)
129 1gvn_B Zeta; postsegregational 62.9 5.8 0.0002 36.6 4.0 30 103-132 15-49 (287)
130 3h1t_A Type I site-specific re 62.8 2.8 9.6E-05 42.6 2.0 27 107-134 190-216 (590)
131 3n70_A Transport activator; si 62.7 2.6 8.8E-05 34.4 1.4 20 114-133 22-41 (145)
132 3co5_A Putative two-component 62.5 2 7E-05 35.0 0.7 20 115-134 26-45 (143)
133 2zan_A Vacuolar protein sortin 62.2 2.1 7.2E-05 42.2 0.8 51 83-133 130-184 (444)
134 3hu3_A Transitional endoplasmi 62.1 3 0.0001 41.8 2.0 50 84-133 201-255 (489)
135 1q0u_A Bstdead; DEAD protein, 61.4 2.7 9.3E-05 36.5 1.4 22 110-133 37-58 (219)
136 1iqp_A RFCS; clamp loader, ext 61.4 3.4 0.00012 37.9 2.1 35 95-133 29-63 (327)
137 3pfi_A Holliday junction ATP-d 61.1 5.7 0.00019 36.9 3.6 44 85-133 27-72 (338)
138 3llm_A ATP-dependent RNA helic 60.7 3.9 0.00013 36.1 2.3 21 111-133 73-93 (235)
139 3fht_A ATP-dependent RNA helic 60.6 4.4 0.00015 38.4 2.8 26 108-133 56-81 (412)
140 1njg_A DNA polymerase III subu 60.0 3.9 0.00013 35.0 2.1 17 117-133 46-62 (250)
141 1w36_D RECD, exodeoxyribonucle 59.8 3.5 0.00012 42.4 2.0 19 116-134 164-182 (608)
142 2oap_1 GSPE-2, type II secreti 59.0 4 0.00014 41.1 2.3 20 112-133 258-277 (511)
143 1c4o_A DNA nucleotide excision 58.5 5 0.00017 41.8 2.9 46 84-135 2-47 (664)
144 2j0s_A ATP-dependent RNA helic 58.4 4.8 0.00017 38.3 2.7 24 108-133 68-91 (410)
145 2chq_A Replication factor C sm 58.3 3 0.0001 38.1 1.2 21 113-133 35-55 (319)
146 4fcw_A Chaperone protein CLPB; 57.7 3.6 0.00012 37.6 1.6 17 117-133 48-64 (311)
147 3pey_A ATP-dependent RNA helic 57.7 5.3 0.00018 37.4 2.8 25 109-133 37-61 (395)
148 1w5s_A Origin recognition comp 57.7 4.4 0.00015 38.5 2.3 26 109-134 40-70 (412)
149 3oiy_A Reverse gyrase helicase 57.5 4.4 0.00015 38.8 2.2 22 109-132 31-52 (414)
150 2r44_A Uncharacterized protein 57.4 4.4 0.00015 37.6 2.2 33 95-133 31-63 (331)
151 3pvs_A Replication-associated 56.9 4 0.00014 40.4 1.8 39 94-133 29-67 (447)
152 2fz4_A DNA repair protein RAD2 56.7 4.5 0.00015 36.0 2.0 38 87-134 89-126 (237)
153 1hqc_A RUVB; extended AAA-ATPa 55.9 9 0.00031 35.1 4.0 44 85-133 10-55 (324)
154 2ewv_A Twitching motility prot 55.9 2.7 9.1E-05 40.5 0.3 26 108-133 128-153 (372)
155 3fho_A ATP-dependent RNA helic 55.2 4.5 0.00015 40.4 1.9 24 109-132 151-174 (508)
156 1s2m_A Putative ATP-dependent 54.2 5.7 0.0002 37.5 2.4 23 109-133 53-75 (400)
157 2z0m_A 337AA long hypothetical 53.3 6.8 0.00023 35.8 2.7 22 110-133 27-48 (337)
158 2db3_A ATP-dependent RNA helic 53.2 6.6 0.00022 38.2 2.7 24 108-133 87-110 (434)
159 2p5t_B PEZT; postsegregational 52.9 5.5 0.00019 35.7 1.9 16 117-132 33-48 (253)
160 4b3f_X DNA-binding protein smu 52.8 4.2 0.00014 42.0 1.2 17 119-135 208-224 (646)
161 2i4i_A ATP-dependent RNA helic 52.5 6.9 0.00023 37.2 2.7 23 109-133 47-69 (417)
162 1in4_A RUVB, holliday junction 52.0 7.5 0.00026 36.4 2.8 17 117-133 52-68 (334)
163 1sxj_B Activator 1 37 kDa subu 51.8 5.8 0.0002 36.2 1.9 21 113-133 39-59 (323)
164 1rif_A DAR protein, DNA helica 51.7 3.6 0.00012 37.4 0.4 34 91-134 113-146 (282)
165 3i5x_A ATP-dependent RNA helic 51.6 7.1 0.00024 39.1 2.7 25 108-132 103-127 (563)
166 3u61_B DNA polymerase accessor 51.5 8.1 0.00028 35.6 2.9 18 117-134 49-66 (324)
167 1n0w_A DNA repair protein RAD5 51.4 5.2 0.00018 35.0 1.4 28 106-133 11-41 (243)
168 1qvr_A CLPB protein; coiled co 51.0 5.6 0.00019 42.5 1.9 30 106-135 181-210 (854)
169 1ojl_A Transcriptional regulat 51.0 6.9 0.00024 36.3 2.3 20 114-133 23-42 (304)
170 2ce7_A Cell division protein F 50.4 4.9 0.00017 40.1 1.3 50 83-133 12-66 (476)
171 2dhr_A FTSH; AAA+ protein, hex 50.3 3.3 0.00011 41.7 -0.1 16 118-133 66-81 (499)
172 1gm5_A RECG; helicase, replica 50.2 7.9 0.00027 41.2 2.9 40 90-133 367-406 (780)
173 3upu_A ATP-dependent DNA helic 49.8 7.2 0.00025 38.4 2.4 37 92-133 26-62 (459)
174 3pxg_A Negative regulator of g 49.1 10 0.00036 37.4 3.4 29 107-135 192-220 (468)
175 2d7d_A Uvrabc system protein B 49.0 9 0.00031 39.8 3.0 48 83-135 4-51 (661)
176 3b85_A Phosphate starvation-in 48.6 5.6 0.00019 34.9 1.2 25 107-133 15-39 (208)
177 2v1x_A ATP-dependent DNA helic 48.5 9.6 0.00033 39.0 3.1 29 94-132 47-75 (591)
178 3b9q_A Chloroplast SRP recepto 47.2 11 0.00036 35.2 2.9 16 118-133 102-117 (302)
179 1sxj_E Activator 1 40 kDa subu 46.9 5.5 0.00019 37.2 1.0 15 119-133 39-53 (354)
180 1xti_A Probable ATP-dependent 46.9 9.4 0.00032 35.7 2.6 24 108-133 39-62 (391)
181 1jr3_A DNA polymerase III subu 46.5 12 0.0004 35.0 3.2 36 94-133 19-55 (373)
182 1hv8_A Putative ATP-dependent 46.3 6.7 0.00023 36.2 1.4 22 111-133 40-61 (367)
183 1rz3_A Hypothetical protein rb 46.0 9.6 0.00033 32.7 2.3 30 104-133 7-39 (201)
184 4a2p_A RIG-I, retinoic acid in 46.0 9.8 0.00033 37.6 2.7 23 109-133 17-39 (556)
185 2w0m_A SSO2452; RECA, SSPF, un 45.9 6.4 0.00022 33.9 1.1 27 107-133 11-40 (235)
186 3cf2_A TER ATPase, transitiona 45.8 13 0.00043 39.7 3.6 51 83-133 200-255 (806)
187 2fwr_A DNA repair protein RAD2 44.6 7.5 0.00026 37.9 1.5 35 90-134 92-126 (472)
188 3sqw_A ATP-dependent RNA helic 43.9 11 0.00038 38.1 2.7 25 108-132 52-76 (579)
189 1fuu_A Yeast initiation factor 43.5 7.2 0.00025 36.5 1.2 23 109-133 53-75 (394)
190 4gp7_A Metallophosphoesterase; 43.5 5 0.00017 33.7 0.0 17 118-134 11-27 (171)
191 3e70_C DPA, signal recognition 43.3 12 0.00041 35.3 2.7 18 116-133 129-146 (328)
192 3c8u_A Fructokinase; YP_612366 42.8 10 0.00036 32.6 2.0 30 104-133 8-39 (208)
193 3hws_A ATP-dependent CLP prote 42.7 7.1 0.00024 36.9 1.0 18 116-133 51-68 (363)
194 3lw7_A Adenylate kinase relate 42.5 6.9 0.00024 31.8 0.8 15 118-132 3-17 (179)
195 2jlq_A Serine protease subunit 42.3 6.4 0.00022 38.6 0.6 24 108-132 12-35 (451)
196 4ag6_A VIRB4 ATPase, type IV s 42.2 5.7 0.0002 38.1 0.2 18 116-133 35-52 (392)
197 1um8_A ATP-dependent CLP prote 42.2 12 0.00042 35.4 2.6 18 116-133 72-89 (376)
198 3tbk_A RIG-I helicase domain; 42.0 12 0.00042 36.7 2.7 23 109-133 14-36 (555)
199 2gk6_A Regulator of nonsense t 41.8 8.6 0.0003 39.5 1.5 19 117-135 196-214 (624)
200 2cvh_A DNA repair and recombin 41.7 13 0.00044 31.7 2.5 28 106-133 7-37 (220)
201 4a74_A DNA repair and recombin 41.5 8.9 0.00031 33.0 1.4 28 106-133 12-42 (231)
202 1lkx_A Myosin IE heavy chain; 41.4 13 0.00043 39.1 2.7 21 113-133 91-111 (697)
203 1e9r_A Conjugal transfer prote 41.3 5.7 0.0002 38.6 0.1 18 116-133 53-70 (437)
204 2og2_A Putative signal recogni 41.2 14 0.00047 35.4 2.8 16 118-133 159-174 (359)
205 2ykg_A Probable ATP-dependent 40.9 13 0.00044 38.2 2.7 32 91-132 13-44 (696)
206 3pxi_A Negative regulator of g 40.4 18 0.0006 38.0 3.7 28 107-134 192-219 (758)
207 4gl2_A Interferon-induced heli 40.0 13 0.00044 38.3 2.5 34 90-133 6-39 (699)
208 3e1s_A Exodeoxyribonuclease V, 39.6 8 0.00028 39.5 0.9 19 116-134 204-222 (574)
209 3nbx_X ATPase RAVA; AAA+ ATPas 39.6 15 0.0005 36.9 2.7 24 108-133 35-58 (500)
210 1w9i_A Myosin II heavy chain; 39.4 14 0.00048 39.2 2.7 21 113-133 169-189 (770)
211 1rj9_A FTSY, signal recognitio 39.4 7.5 0.00026 36.3 0.6 18 116-133 102-119 (304)
212 1ly1_A Polynucleotide kinase; 39.3 8.3 0.00029 31.8 0.8 15 118-132 4-18 (181)
213 4gkp_A Spindle POLE BODY-assoc 39.0 13 0.00046 34.2 2.1 73 53-126 4-92 (275)
214 2v26_A Myosin VI; calmodulin-b 38.9 14 0.00049 39.2 2.7 21 113-133 137-157 (784)
215 2px0_A Flagellar biosynthesis 38.7 11 0.00038 34.9 1.7 18 117-134 106-123 (296)
216 3a00_A Guanylate kinase, GMP k 38.6 7.3 0.00025 33.0 0.3 15 119-133 4-18 (186)
217 1wp9_A ATP-dependent RNA helic 38.0 11 0.00037 36.0 1.5 34 90-134 8-41 (494)
218 3lfu_A DNA helicase II; SF1 he 37.8 9.4 0.00032 38.9 1.0 20 115-134 21-40 (647)
219 3trf_A Shikimate kinase, SK; a 37.5 9.2 0.00032 31.9 0.8 15 118-132 7-21 (185)
220 1qhx_A CPT, protein (chloramph 37.4 9.9 0.00034 31.4 1.0 16 117-132 4-19 (178)
221 1g8x_A Myosin II heavy chain f 37.3 15 0.00052 40.2 2.6 21 113-133 169-189 (1010)
222 1w7j_A Myosin VA; motor protei 37.0 16 0.00055 38.9 2.7 21 113-133 153-173 (795)
223 3kl4_A SRP54, signal recogniti 37.0 23 0.00079 34.8 3.7 17 117-133 98-114 (433)
224 1kk8_A Myosin heavy chain, str 36.9 15 0.0005 39.4 2.4 21 113-133 166-186 (837)
225 4db1_A Myosin-7; S1DC, cardiac 36.6 16 0.00056 38.7 2.7 21 113-133 168-188 (783)
226 3tau_A Guanylate kinase, GMP k 36.6 7.4 0.00025 33.7 0.0 17 117-133 9-25 (208)
227 3iij_A Coilin-interacting nucl 36.4 10 0.00034 31.6 0.8 17 117-133 12-28 (180)
228 3tr0_A Guanylate kinase, GMP k 36.3 7.5 0.00026 33.0 0.0 16 118-133 9-24 (205)
229 2r8r_A Sensor protein; KDPD, P 36.3 7.6 0.00026 34.9 0.0 19 117-135 7-25 (228)
230 3pxi_A Negative regulator of g 36.3 43 0.0015 35.0 5.9 38 95-133 495-538 (758)
231 2ycu_A Non muscle myosin 2C, a 36.2 16 0.00056 39.8 2.7 21 113-133 143-163 (995)
232 2dr3_A UPF0273 protein PH0284; 36.2 15 0.00052 31.8 2.1 26 108-133 12-40 (247)
233 1i84_S Smooth muscle myosin he 36.1 17 0.00057 40.5 2.7 21 113-133 166-186 (1184)
234 1r6b_X CLPA protein; AAA+, N-t 35.1 20 0.00069 37.4 3.1 29 107-135 198-226 (758)
235 2orw_A Thymidine kinase; TMTK, 34.8 7.2 0.00025 33.3 -0.4 18 118-135 5-22 (184)
236 1j8m_F SRP54, signal recogniti 34.7 28 0.00094 32.2 3.7 16 118-133 100-115 (297)
237 1kgd_A CASK, peripheral plasma 34.6 8.4 0.00029 32.4 0.0 16 118-133 7-22 (180)
238 3dm5_A SRP54, signal recogniti 34.6 27 0.00093 34.4 3.8 19 116-134 100-118 (443)
239 1ye8_A Protein THEP1, hypothet 34.5 8.4 0.00029 32.7 0.0 15 119-133 3-17 (178)
240 2dfs_A Myosin-5A; myosin-V, in 34.5 18 0.00062 39.9 2.7 21 113-133 153-173 (1080)
241 1gku_B Reverse gyrase, TOP-RG; 34.3 17 0.00059 39.8 2.5 23 107-131 64-86 (1054)
242 1zp6_A Hypothetical protein AT 34.3 8.3 0.00028 32.3 -0.0 16 118-133 11-26 (191)
243 2b8t_A Thymidine kinase; deoxy 34.0 7.6 0.00026 34.6 -0.3 21 116-136 12-32 (223)
244 1lvg_A Guanylate kinase, GMP k 34.0 8.7 0.0003 33.0 0.1 16 118-133 6-21 (198)
245 4anj_A Unconventional myosin-V 34.0 19 0.00064 39.6 2.7 21 113-133 141-161 (1052)
246 2xzl_A ATP-dependent helicase 33.7 13 0.00046 39.5 1.4 17 118-134 377-393 (802)
247 1oyw_A RECQ helicase, ATP-depe 33.7 10 0.00035 38.0 0.6 31 93-133 27-57 (523)
248 1sxj_A Activator 1 95 kDa subu 33.6 16 0.00054 36.5 1.9 17 117-133 78-94 (516)
249 3sop_A Neuronal-specific septi 33.2 8.9 0.0003 35.0 -0.0 18 116-133 2-19 (270)
250 2qag_C Septin-7; cell cycle, c 33.2 8.9 0.0003 37.6 -0.0 23 111-133 26-48 (418)
251 2wjy_A Regulator of nonsense t 33.1 14 0.00049 39.2 1.5 19 117-135 372-390 (800)
252 4a4z_A Antiviral helicase SKI2 33.0 20 0.00067 39.2 2.6 33 90-132 38-70 (997)
253 4a2w_A RIG-I, retinoic acid in 32.4 17 0.00057 39.4 1.9 24 108-133 257-280 (936)
254 1kht_A Adenylate kinase; phosp 32.3 13 0.00046 30.8 0.9 16 117-132 4-19 (192)
255 2qnr_A Septin-2, protein NEDD5 32.1 9.1 0.00031 35.5 -0.2 23 111-133 13-35 (301)
256 1ypw_A Transitional endoplasmi 32.1 16 0.00054 38.9 1.7 52 82-133 199-255 (806)
257 2oca_A DAR protein, ATP-depend 32.0 14 0.00047 36.4 1.1 34 91-134 113-146 (510)
258 2ehv_A Hypothetical protein PH 31.9 10 0.00036 33.0 0.2 16 118-133 32-47 (251)
259 2bdt_A BH3686; alpha-beta prot 31.8 10 0.00034 31.9 0.0 16 118-133 4-19 (189)
260 1a5t_A Delta prime, HOLB; zinc 31.7 23 0.0008 32.9 2.7 35 95-133 6-41 (334)
261 2gza_A Type IV secretion syste 31.6 11 0.00036 36.0 0.2 19 113-133 174-192 (361)
262 1qvr_A CLPB protein; coiled co 31.6 29 0.00099 37.0 3.6 17 117-133 589-605 (854)
263 1r6b_X CLPA protein; AAA+, N-t 31.5 25 0.00085 36.8 3.1 17 117-133 489-505 (758)
264 1kag_A SKI, shikimate kinase I 31.4 13 0.00046 30.4 0.8 15 118-132 6-20 (173)
265 2pt7_A CAG-ALFA; ATPase, prote 31.2 11 0.00037 35.6 0.2 19 113-133 170-188 (330)
266 4a2q_A RIG-I, retinoic acid in 31.1 22 0.00077 37.4 2.7 24 108-133 257-280 (797)
267 2i3b_A HCR-ntpase, human cance 31.0 11 0.00036 32.5 0.1 16 118-133 3-18 (189)
268 2v6i_A RNA helicase; membrane, 30.5 17 0.00058 35.3 1.5 16 118-133 4-19 (431)
269 2j41_A Guanylate kinase; GMP, 30.4 11 0.00037 31.9 0.0 16 118-133 8-23 (207)
270 2rhm_A Putative kinase; P-loop 30.3 14 0.00048 30.8 0.7 16 117-132 6-21 (193)
271 2ze6_A Isopentenyl transferase 30.1 15 0.00053 32.8 1.0 14 118-131 3-16 (253)
272 1uaa_A REP helicase, protein ( 30.1 13 0.00045 38.3 0.6 20 116-135 15-34 (673)
273 3kb2_A SPBC2 prophage-derived 30.1 15 0.00051 29.9 0.9 15 118-132 3-17 (173)
274 1vma_A Cell division protein F 29.9 11 0.00038 35.1 0.0 17 117-133 105-121 (306)
275 2yhs_A FTSY, cell division pro 29.9 22 0.00076 35.7 2.2 16 118-133 295-310 (503)
276 1odf_A YGR205W, hypothetical 3 29.9 32 0.0011 31.7 3.2 19 115-133 30-48 (290)
277 1xx6_A Thymidine kinase; NESG, 29.8 10 0.00034 32.9 -0.3 18 118-135 10-27 (191)
278 2ga8_A Hypothetical 39.9 kDa p 29.8 32 0.0011 32.9 3.3 21 113-133 21-41 (359)
279 3lnc_A Guanylate kinase, GMP k 29.4 13 0.00045 32.4 0.4 16 118-133 29-44 (231)
280 4a15_A XPD helicase, ATP-depen 29.1 25 0.00085 36.1 2.5 38 90-133 2-39 (620)
281 3rc3_A ATP-dependent RNA helic 28.9 15 0.00051 38.3 0.8 20 111-132 152-171 (677)
282 3vaa_A Shikimate kinase, SK; s 28.8 17 0.00058 30.9 1.0 15 118-132 27-41 (199)
283 2r2a_A Uncharacterized protein 28.7 16 0.00054 31.8 0.8 16 119-134 8-23 (199)
284 1tev_A UMP-CMP kinase; ploop, 28.7 16 0.00054 30.4 0.8 15 118-132 5-19 (196)
285 1moz_A ARL1, ADP-ribosylation 28.5 24 0.00082 28.7 1.9 27 107-133 8-35 (183)
286 2eyq_A TRCF, transcription-rep 28.4 35 0.0012 37.8 3.7 38 91-132 603-640 (1151)
287 1znw_A Guanylate kinase, GMP k 28.4 12 0.00042 32.1 0.0 15 119-133 23-37 (207)
288 1e6c_A Shikimate kinase; phosp 27.9 17 0.00057 29.8 0.8 15 118-132 4-18 (173)
289 2yvu_A Probable adenylyl-sulfa 27.8 17 0.00057 30.4 0.8 18 116-133 13-30 (186)
290 4ddu_A Reverse gyrase; topoiso 27.8 25 0.00085 38.8 2.3 22 108-131 87-108 (1104)
291 3cm0_A Adenylate kinase; ATP-b 27.8 17 0.00057 30.2 0.8 15 118-132 6-20 (186)
292 1y63_A LMAJ004144AAA protein; 27.4 17 0.00059 30.5 0.8 15 118-132 12-26 (184)
293 1z6g_A Guanylate kinase; struc 27.3 13 0.00046 32.3 0.1 15 119-133 26-40 (218)
294 2v3c_C SRP54, signal recogniti 27.3 50 0.0017 32.2 4.3 18 117-134 100-117 (432)
295 1yks_A Genome polyprotein [con 27.2 20 0.00068 35.0 1.3 21 111-133 5-25 (440)
296 2z83_A Helicase/nucleoside tri 26.8 21 0.00073 34.9 1.5 15 118-132 23-37 (459)
297 1uf9_A TT1252 protein; P-loop, 26.7 19 0.00066 30.2 1.0 19 114-132 6-24 (203)
298 2zj8_A DNA helicase, putative 26.7 17 0.0006 37.7 0.8 31 94-133 26-56 (720)
299 3l9o_A ATP-dependent RNA helic 26.5 25 0.00087 38.8 2.1 21 110-132 195-215 (1108)
300 2iyv_A Shikimate kinase, SK; t 26.4 18 0.00063 30.0 0.8 15 118-132 4-18 (184)
301 2vli_A Antibiotic resistance p 26.4 19 0.00063 29.8 0.8 16 117-132 6-21 (183)
302 1nks_A Adenylate kinase; therm 26.4 18 0.00061 30.0 0.7 15 118-132 3-17 (194)
303 1v5w_A DMC1, meiotic recombina 26.3 30 0.001 32.5 2.4 28 106-133 109-139 (343)
304 2qor_A Guanylate kinase; phosp 26.2 20 0.00069 30.5 1.0 15 118-132 14-28 (204)
305 2p6r_A Afuhel308 helicase; pro 26.2 19 0.00064 37.3 1.0 32 92-133 26-57 (702)
306 3kta_A Chromosome segregation 26.1 22 0.00074 29.5 1.2 16 118-133 28-43 (182)
307 2z43_A DNA repair and recombin 26.1 31 0.0011 32.0 2.4 28 106-133 94-124 (324)
308 3uie_A Adenylyl-sulfate kinase 26.1 27 0.00092 29.6 1.8 19 115-133 24-42 (200)
309 1f2t_A RAD50 ABC-ATPase; DNA d 25.9 22 0.00075 29.1 1.1 15 119-133 26-40 (149)
310 1pzn_A RAD51, DNA repair and r 25.7 32 0.0011 32.4 2.5 28 106-133 118-148 (349)
311 1via_A Shikimate kinase; struc 25.6 19 0.00066 29.7 0.8 15 118-132 6-20 (175)
312 2iut_A DNA translocase FTSK; n 25.4 15 0.00051 37.5 0.0 18 117-134 215-232 (574)
313 2i1q_A DNA repair and recombin 25.2 32 0.0011 31.7 2.3 28 106-133 85-115 (322)
314 2pt5_A Shikimate kinase, SK; a 25.2 20 0.00068 29.2 0.8 14 119-132 3-16 (168)
315 2xgj_A ATP-dependent RNA helic 25.0 28 0.00096 38.0 2.1 33 90-132 85-117 (1010)
316 2bwj_A Adenylate kinase 5; pho 24.9 20 0.00068 30.0 0.7 15 118-132 14-28 (199)
317 3t5d_A Septin-7; GTP-binding p 24.8 21 0.00071 32.2 0.9 21 113-133 5-25 (274)
318 3t61_A Gluconokinase; PSI-biol 24.5 21 0.00071 30.3 0.8 16 117-132 19-34 (202)
319 3a4m_A L-seryl-tRNA(SEC) kinas 24.5 21 0.0007 32.0 0.8 16 117-132 5-20 (260)
320 2qen_A Walker-type ATPase; unk 24.3 42 0.0014 30.5 2.9 17 117-133 32-48 (350)
321 2fna_A Conserved hypothetical 23.9 21 0.00072 32.6 0.8 17 117-133 31-47 (357)
322 1qf9_A UMP/CMP kinase, protein 23.8 22 0.00074 29.4 0.7 15 118-132 8-22 (194)
323 2w00_A HSDR, R.ECOR124I; ATP-b 23.8 26 0.00088 38.5 1.5 16 119-134 303-318 (1038)
324 1zd8_A GTP:AMP phosphotransfer 23.5 22 0.00075 30.9 0.7 15 118-132 9-23 (227)
325 1ukz_A Uridylate kinase; trans 23.5 22 0.00077 30.0 0.8 15 118-132 17-31 (203)
326 3m6a_A ATP-dependent protease 23.4 18 0.0006 36.6 0.1 18 116-133 108-125 (543)
327 1pjr_A PCRA; DNA repair, DNA r 23.3 22 0.00074 37.2 0.8 20 116-135 24-43 (724)
328 2c95_A Adenylate kinase 1; tra 23.3 22 0.00076 29.6 0.7 16 117-132 10-25 (196)
329 1g41_A Heat shock protein HSLU 23.1 22 0.00076 35.0 0.8 17 117-133 51-67 (444)
330 1aky_A Adenylate kinase; ATP:A 23.1 23 0.00078 30.5 0.8 14 118-131 6-19 (220)
331 1w4r_A Thymidine kinase; type 23.1 26 0.0009 30.5 1.2 24 108-131 12-35 (195)
332 2qmh_A HPR kinase/phosphorylas 22.9 23 0.00079 31.2 0.8 19 115-133 33-51 (205)
333 1zu4_A FTSY; GTPase, signal re 22.9 18 0.00062 33.9 0.0 16 118-133 107-122 (320)
334 3k1j_A LON protease, ATP-depen 22.7 35 0.0012 34.7 2.2 39 85-133 39-77 (604)
335 1htw_A HI0065; nucleotide-bind 22.7 18 0.00063 30.0 0.0 16 118-133 35-50 (158)
336 1knq_A Gluconate kinase; ALFA/ 22.6 26 0.00089 28.7 1.0 16 118-133 10-25 (175)
337 2gno_A DNA polymerase III, gam 22.5 35 0.0012 31.5 2.0 28 106-133 8-35 (305)
338 3o8b_A HCV NS3 protease/helica 22.4 27 0.00093 36.3 1.3 16 118-133 234-249 (666)
339 2zr9_A Protein RECA, recombina 22.3 40 0.0014 31.8 2.4 28 106-133 47-78 (349)
340 3fb4_A Adenylate kinase; psych 22.1 25 0.00085 30.0 0.8 14 119-132 3-16 (216)
341 3crm_A TRNA delta(2)-isopenten 22.0 27 0.00091 32.9 1.0 14 118-131 7-20 (323)
342 3a8t_A Adenylate isopentenyltr 22.0 27 0.00092 33.2 1.1 14 118-131 42-55 (339)
343 2xau_A PRE-mRNA-splicing facto 22.0 34 0.0012 36.1 2.0 14 118-131 111-124 (773)
344 2cdn_A Adenylate kinase; phosp 21.9 30 0.001 29.2 1.3 19 114-132 18-36 (201)
345 2ius_A DNA translocase FTSK; n 21.8 19 0.00067 36.2 0.0 17 117-133 168-184 (512)
346 3asz_A Uridine kinase; cytidin 21.8 19 0.00066 30.6 -0.0 16 118-133 8-23 (211)
347 1ak2_A Adenylate kinase isoenz 21.7 25 0.00087 30.6 0.8 16 117-132 17-32 (233)
348 3sr0_A Adenylate kinase; phosp 21.5 26 0.00089 30.5 0.8 12 119-130 3-14 (206)
349 1c9k_A COBU, adenosylcobinamid 21.3 28 0.00097 29.8 1.0 12 119-130 2-13 (180)
350 1svm_A Large T antigen; AAA+ f 21.2 48 0.0017 31.8 2.7 17 117-133 170-186 (377)
351 3nmd_A CGMP dependent protein 21.1 2.2E+02 0.0075 20.5 5.5 35 25-63 35-69 (72)
352 1zuh_A Shikimate kinase; alpha 21.1 27 0.00092 28.5 0.8 14 118-131 9-22 (168)
353 1xjc_A MOBB protein homolog; s 21.0 21 0.00071 30.3 0.0 16 119-134 7-22 (169)
354 1zj6_A ADP-ribosylation factor 20.9 58 0.002 26.6 2.9 23 111-133 11-33 (187)
355 2pbr_A DTMP kinase, thymidylat 20.9 27 0.00093 28.9 0.8 14 119-132 3-16 (195)
356 3foz_A TRNA delta(2)-isopenten 20.8 29 0.001 32.6 1.0 14 118-131 12-25 (316)
357 3dl0_A Adenylate kinase; phosp 20.8 27 0.00094 29.8 0.8 14 119-132 3-16 (216)
358 2if2_A Dephospho-COA kinase; a 20.5 27 0.00094 29.4 0.7 14 119-132 4-17 (204)
359 3umf_A Adenylate kinase; rossm 20.5 27 0.00094 30.7 0.7 13 118-130 31-43 (217)
360 2jaq_A Deoxyguanosine kinase; 20.5 28 0.00095 29.1 0.8 14 119-132 3-16 (205)
361 2plr_A DTMP kinase, probable t 20.5 28 0.00096 29.3 0.8 15 118-132 6-20 (213)
362 2vhj_A Ntpase P4, P4; non- hyd 20.4 29 0.001 32.8 0.9 16 118-133 125-140 (331)
363 2bbw_A Adenylate kinase 4, AK4 20.1 29 0.00098 30.5 0.8 17 117-133 28-44 (246)
364 3tif_A Uncharacterized ABC tra 20.1 22 0.00076 31.5 0.0 15 119-133 34-48 (235)
365 2va8_A SSO2462, SKI2-type heli 20.1 31 0.0011 35.6 1.2 32 93-133 32-63 (715)
No 1
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-61 Score=478.50 Aligned_cols=302 Identities=24% Similarity=0.323 Sum_probs=237.7
Q ss_pred hHHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHhhhcceec----cccccC-CCC------
Q psy5719 8 QYEALETALKEAKEG-AMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ----KNLARR-GPA------ 75 (378)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~------ 75 (378)
+.++++..++.+++. +..++...+.++--..+++.+..+...|++++|++.++|++||| +|+... +..
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~ 83 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLIN 83 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEE
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeE
Confidence 346777778777777 66666666655555556666777799999999999998887776 554322 100
Q ss_pred -----C-------------cCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccC
Q psy5719 76 -----P-------------QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVM 137 (378)
Q Consensus 76 -----~-------------~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~ 137 (378)
. .....+.|+||+||+|+++|++||+. +.|+|+++++|||+||||||||||||||||+|+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~- 161 (403)
T 4etp_A 84 VNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP- 161 (403)
T ss_dssp ECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHH-HHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT-
T ss_pred EeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHH-HHHHHHHHhCCcceEEEEECCCCCCCceEeCCC-
Confidence 0 01123689999999999999999998 569999999999999999999999999999873
Q ss_pred CCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeecc
Q psy5719 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMD 216 (378)
Q Consensus 138 ~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE 216 (378)
..||+||++.+||..+... ...+.|.|++||+|||||
T Consensus 162 ------------------------------------------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE 199 (403)
T 4etp_A 162 ------------------------------------------GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNE 199 (403)
T ss_dssp ------------------------------------------TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETT
T ss_pred ------------------------------------------CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecc
Confidence 2399999999999998763 457899999999999999
Q ss_pred cccccccccc---------CCCcccccC-CCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----ch
Q psy5719 217 KIRDLLDVSK---------VNLSVHEDK-NRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LS 279 (378)
Q Consensus 217 ~i~DLL~~~~---------~~L~i~ed~-~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rS 279 (378)
.|+|||.+.. ..+.+++++ .++++| .+++++.+.|.++++.++..| |+++.|.|| ||
T Consensus 200 ~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v------~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRS 273 (403)
T 4etp_A 200 NIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI------TNVTSVKLESEEMVEIILKKANKLRSTASTASNEHSSRS 273 (403)
T ss_dssp EEEETTCC--------CCSCCCCEEEETTTTEEEE------TTCCCEECCCHHHHHHHHHHHC--C----CHHHHHHHTS
T ss_pred eeeEccCCccccccccccCcceeeEEeCCCCCEEe------cCcEEEEeCCHHHHHHHHHHHHHhcccccccCCcccCCc
Confidence 9999998653 346677765 455777 799999999999999999988 999999998 99
Q ss_pred hhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh-hh
Q psy5719 280 HHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ-KQ 358 (378)
Q Consensus 280 H~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~-~~ 358 (378)
|+||+++..+.... .+....|+|+||||||||| ..++++.| +|++|+++||+||++||+||.||++... ++
T Consensus 274 H~if~i~v~~~~~~-~~~~~~~kL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~ 345 (403)
T 4etp_A 274 HSIFIIHLSGSNAK-TGAHSYGTLNLVDLAGSER-----INVSQVVG--DRLRETQNINKSLSALGDVIHALGQPDSTKR 345 (403)
T ss_dssp EEEEEEEEEEEETT-TCCEEEEEEEEEECCCCCC-----CCCSSCCH--HHHHHHHHHHHHHHHHHHHHHHHTSSCTTTS
T ss_pred ccEEEEEEEEeecC-CCCeeEEEEEEEECCCCcc-----ccccCChh--HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 99999986544322 2224567899999999999 44455555 9999999999999999999999987653 45
Q ss_pred hhhhhhHHH
Q psy5719 359 VAELRDEIA 367 (378)
Q Consensus 359 ~~~~~d~~~ 367 (378)
+.|+||+-+
T Consensus 346 hiPyRdSkL 354 (403)
T 4etp_A 346 HIPFRNSKL 354 (403)
T ss_dssp CCCGGGSHH
T ss_pred cCCcccchH
Confidence 899999864
No 2
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.9e-60 Score=474.24 Aligned_cols=297 Identities=23% Similarity=0.315 Sum_probs=230.0
Q ss_pred HHHHHHHHHHHHhh-hhHHhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHhhhcceec----cccccCCCC--------
Q psy5719 9 YEALETALKEAKEG-AMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ----KNLARRGPA-------- 75 (378)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-------- 75 (378)
-.+|+.++.++++. +..+++..+..+--..+.+.+..+...|++++|++.+++++|+| +|+...+..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~~~~~ 84 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTY 84 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcceEEEe
Confidence 46888999999888 55566666655544445555666789999999999998887776 454322110
Q ss_pred -----Cc----------CCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCC
Q psy5719 76 -----PQ----------IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDP 140 (378)
Q Consensus 76 -----~~----------~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~ 140 (378)
+. ....+.|+||+||+|+++|++||+. +.|+|+++|+|||+||||||||||||||||+|..
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~--- 160 (412)
T 3u06_A 85 HDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVP--- 160 (412)
T ss_dssp EETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEET---
T ss_pred cCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCC---
Confidence 00 0124689999999999999999985 6899999999999999999999999999999852
Q ss_pred CCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccc
Q psy5719 141 NKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIR 219 (378)
Q Consensus 141 ~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~ 219 (378)
..+||+||++.+||+.+... ...+.|.|++||+|||||.|+
T Consensus 161 --------------------------------------~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~ 202 (412)
T 3u06_A 161 --------------------------------------ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLY 202 (412)
T ss_dssp --------------------------------------TEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEE
T ss_pred --------------------------------------CCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeE
Confidence 33499999999999998763 357899999999999999999
Q ss_pred cccccccCCCcc--cccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhh
Q psy5719 220 DLLDVSKVNLSV--HEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQE 290 (378)
Q Consensus 220 DLL~~~~~~L~i--~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~ 290 (378)
|||++...++.+ .+++.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||++...+.
T Consensus 203 DLL~~~~~~~~i~~~~~~~~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~ 276 (412)
T 3u06_A 203 DLLSNEQKDMEIRMAKNNKNDIYV------SNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGR 276 (412)
T ss_dssp ETTCCSCCCCCEEECSSCTTSEEE------TTCCCEECCSHHHHHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEE
T ss_pred EcCCCCCCCceeeeeecCCCCEEE------cceEEEEeCCHHHHHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEE
Confidence 999887665544 4678888888 799999999999999999987 999999998 9999999986644
Q ss_pred hhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 291 SMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 291 ~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
.. .......|+|+|||||||||+. . ++|++|+++||+||++||+||.||++ .+++.|+||+-+
T Consensus 277 ~~-~~~~~~~~kL~lVDLAGSEr~~---------~--~~rl~E~~~INkSL~aLg~vI~aL~~--~~~hiPyRdSkL 339 (412)
T 3u06_A 277 HA-EKQEISVGSINLVDLAGSESPK---------T--STRMTETKNINRSLSELTNVILALLQ--KQDHIPYRNSKL 339 (412)
T ss_dssp ET-TTTEEEEEEEEEEECCCCCC---------------------CTTTHHHHHHHHHHHHHHT--TCSCCCGGGSHH
T ss_pred eC-CCCCEEEEEEEEEECCCCCcCC---------c--cchhHhHHHHhHHHHHHHHHHHHHhc--cCCCCCccccHH
Confidence 33 2233556889999999999832 2 38999999999999999999999996 457999999864
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=6e-61 Score=471.33 Aligned_cols=235 Identities=57% Similarity=0.769 Sum_probs=196.6
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|+||+||+|+++|++||+.++.|+|+++++|||+||||||||||||||||.|..++
T Consensus 49 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~-------------------- 108 (365)
T 2y65_A 49 AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGD-------------------- 108 (365)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTC--------------------
T ss_pred CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCC--------------------
Confidence 458899999999999999999999999999999999999999999999999999986332
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
+..+||+||++.+||+.+......+.|.|++||+|||||.++|||++.+..+.+++|+.+++
T Consensus 109 ------------------~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~~~ 170 (365)
T 2y65_A 109 ------------------SVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVP 170 (365)
T ss_dssp ------------------TTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEECSSSCE
T ss_pred ------------------cccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEECCCCCE
Confidence 35669999999999999987777899999999999999999999999889999999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhccc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSE 312 (378)
+| .+++++.|.|.++++.++..| |+++.|.|| |||+||++...+.... ......|+++||||||||
T Consensus 171 ~v------~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL~lVDLAGSE 243 (365)
T 2y65_A 171 YV------KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLE-NQKKLSGKLYLVDLAGSE 243 (365)
T ss_dssp EE------TTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETT-TCCEEEEEEEEEECCCCC
T ss_pred Ee------cCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC-CCCEeEEEEEEEECCCCC
Confidence 98 799999999999999999987 999999998 9999999986544332 233456889999999999
Q ss_pred chhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 313 ra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
| ..++++.| +|++|+++||+||++||+||.+|++.. +.+.++||+-+
T Consensus 244 r-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~-~~hvPyRdSkL 290 (365)
T 2y65_A 244 K-----VSKTGAEG--TVLDEAKNINKSLSALGNVISALADGN-KTHIPYRDSKL 290 (365)
T ss_dssp C-----------------------CCHHHHHHHHHHHHHHHCC-CSCCCGGGCHH
T ss_pred c-----chhcCCcc--hhHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCccccCHH
Confidence 9 55566666 999999999999999999999999853 46899999853
No 4
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=3.1e-61 Score=467.15 Aligned_cols=234 Identities=50% Similarity=0.697 Sum_probs=208.6
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
.++.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||.|...
T Consensus 42 ~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~--------------------- 100 (325)
T 1bg2_A 42 ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH--------------------- 100 (325)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTT---------------------
T ss_pred CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCC---------------------
Confidence 46889999999999999999999999999999999999999999999999999998633
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
++...||+||++.+||+.+.....++.|.|++||+|||||.++|||++.+..|.+++|+.+++
T Consensus 101 -----------------~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~~~~~ 163 (325)
T 1bg2_A 101 -----------------DPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVP 163 (325)
T ss_dssp -----------------CTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECTTSCE
T ss_pred -----------------CcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECCCCCE
Confidence 235669999999999999987777899999999999999999999999889999999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhccc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSE 312 (378)
+| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...+... .......|+++||||||||
T Consensus 164 ~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~-~~~~~~~skl~lVDLAGSE 236 (325)
T 1bg2_A 164 YV------KGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENT-QTEQKLSGKLYLVDLAGSE 236 (325)
T ss_dssp EE------TTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEET-TTCCEEEEEEEEEECCCSC
T ss_pred Ee------cCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEec-CCCcEEEEEEEEEECCCCC
Confidence 98 799999999999999999987 999999998 999999998654332 2233456889999999999
Q ss_pred chhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 313 ra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
| ..++++.| +|++|+++||+||++||+||.+|++. +++.++||+-+
T Consensus 237 r-----~~~t~~~g--~rl~E~~~IN~SL~aLg~vI~aL~~~--~~hvPyRdSkL 282 (325)
T 1bg2_A 237 K-----VSKTGAEG--AVLDEAKNINKSLSALGNVISALAEG--STYVPYRDSKM 282 (325)
T ss_dssp C-----CCCCSSSC--TTSCCCCCCCHHHHHHHHHHHHHHTT--CSCCCGGGSHH
T ss_pred c-----ccccCCcc--ccchHHHHHHHHHHHHHHHHHHHHcC--CCCCcccccHH
Confidence 9 44555555 99999999999999999999999975 57999999853
No 5
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.6e-60 Score=464.51 Aligned_cols=255 Identities=36% Similarity=0.459 Sum_probs=213.6
Q ss_pred HhhhcceeccccccCCCC------C----------cCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceee
Q psy5719 58 DRIKEAVRQKNLARRGPA------P----------QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121 (378)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~------~----------~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~a 121 (378)
..|++++|++|+...+.. . .....+.|+||+||+++++|++||+.++.|+|+++++|||+||||
T Consensus 4 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifA 83 (349)
T 1t5c_A 4 GAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFA 83 (349)
T ss_dssp CCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETTSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECCCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceee
Confidence 467889999987654321 0 123468999999999999999999999999999999999999999
Q ss_pred eccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccccc
Q psy5719 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201 (378)
Q Consensus 122 yG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~ 201 (378)
||||||||||||+|.. ..+||+||++.+||+.+... ++
T Consensus 84 YGqTGSGKTyTM~G~~-----------------------------------------~~~Giipr~~~~lF~~i~~~-~~ 121 (349)
T 1t5c_A 84 YGQTASGKTYTMMGSE-----------------------------------------DHLGVIPRAIHDIFQKIKKF-PD 121 (349)
T ss_dssp EESTTSSHHHHHTBCS-----------------------------------------SSBCHHHHHHHHHHHHGGGC-TT
T ss_pred ecCCCCCCCeEEecCC-----------------------------------------CCCchHHHHHHHHHHHHHhC-cC
Confidence 9999999999999852 34599999999999999763 56
Q ss_pred ceeEEEEeeeeeeccccccccccc--cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhc
Q psy5719 202 LEFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRL 276 (378)
Q Consensus 202 ~~~~V~vS~~EIYnE~i~DLL~~~--~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~l 276 (378)
..|.|++||+|||||.++|||++. ..+|.+++|+.++++| .+++++.+.|.++++.++..| |+++.|.|
T Consensus 122 ~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~ 195 (349)
T 1t5c_A 122 REFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYV------ADLTEEVVYTSEMALKWITKGEKSRHYGETKM 195 (349)
T ss_dssp EEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTTEEEE------TTCCCEECSSHHHHHHHHHHHHHTTSSSSSSS
T ss_pred CcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCCCEEe------cCCEEEEeCCHHHHHHHHHHhhcccccccccC
Confidence 899999999999999999999865 3679999999999998 799999999999999999988 99999999
Q ss_pred c----chhhHHHHhhhhhhhhh----hccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHH
Q psy5719 277 L----LSHHEARMKSLQESMKE----AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQM 348 (378)
Q Consensus 277 n----rSH~if~i~~~~~~l~e----~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi 348 (378)
| |||+||++......... .+....|+|+||||||||| ..++++.| +|++|+++||+||++||+||
T Consensus 196 N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI 268 (349)
T 1t5c_A 196 NQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLVDLAGSER-----AAQTGAAG--VRLKEGCNINRSLFILGQVI 268 (349)
T ss_dssp SCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEEECCCGGG-----TC---------CCCSSSCCCHHHHHHHHHH
T ss_pred CCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEEECCCCcc-----ccccCCcc--ccchhhhHHhHHHHHHHHHH
Confidence 8 99999998865432221 1224568899999999999 55555555 99999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhHHH
Q psy5719 349 DQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 349 ~aL~~~~~~~~~~~~d~~~ 367 (378)
.+|++.....+.++||+-+
T Consensus 269 ~aL~~~~~~~hvPyRdSkL 287 (349)
T 1t5c_A 269 KKLSDGQVGGFINYRDSKL 287 (349)
T ss_dssp HHHHHTCCTTSSCGGGSHH
T ss_pred HHHhccCCCCCCcccccHH
Confidence 9999987678999999864
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=5e-60 Score=466.70 Aligned_cols=255 Identities=24% Similarity=0.328 Sum_probs=195.8
Q ss_pred HHhhhcceeccccccCCCC------C--------c------CCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCC
Q psy5719 57 VDRIKEAVRQKNLARRGPA------P--------Q------IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN 116 (378)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~------~--------~------~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n 116 (378)
...|++++|++|+...+.. + . ....+.|+||+||+++++|++||+.++.|+|+++|+|||
T Consensus 20 ~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N 99 (388)
T 3bfn_A 20 PARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQN 99 (388)
T ss_dssp CCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCC
T ss_pred CCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCce
Confidence 3467888888886553210 0 0 113468999999999999999999999999999999999
Q ss_pred cceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 117 GTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
+||||||||||||||||+|.. ..+||+||++.+||+.+.
T Consensus 100 ~tifAYGqTGSGKTyTM~G~~-----------------------------------------~~~Giipra~~~lF~~i~ 138 (388)
T 3bfn_A 100 ASVLAYGPTGAGKTHTMLGSP-----------------------------------------EQPGVIPRALMDLLQLTR 138 (388)
T ss_dssp EEEEEESCTTSSHHHHHTBCS-----------------------------------------SSBCHHHHHHHHHHHHHH
T ss_pred eeEeeecCCCCCCCeEeecCc-----------------------------------------cccchhHHHHHHHHHHHH
Confidence 999999999999999999852 345999999999999986
Q ss_pred cc---cccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HH
Q psy5719 197 QM---DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KE 270 (378)
Q Consensus 197 ~~---~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~ 270 (378)
.. ...+.|.|++||+|||||.|+|||++...+|.+++|+.++++| .+++++.+.|.++++.++..| |+
T Consensus 139 ~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~ired~~~~v~v------~gl~~~~V~s~~e~~~ll~~g~~~R~ 212 (388)
T 3bfn_A 139 EEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILI------PGLSQKPISSFADFERHFLPASRNRT 212 (388)
T ss_dssp HHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCCEECTTSCEEC------TTCCCEECCSHHHHHHHHHHHTC---
T ss_pred HhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceEEEcCCCCEEe------ccceEEEeCCHHHHHHHHHHHhhccc
Confidence 53 3568999999999999999999999988899999999999998 799999999999999999988 99
Q ss_pred hhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHH
Q psy5719 271 LGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ 346 (378)
Q Consensus 271 ~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~ 346 (378)
++.|.|| |||+||++...+...........|+|+||||||||| ..++++.| +|++|+++||+||++||+
T Consensus 213 ~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~skL~lVDLAGSEr-----~~~t~~~g--~rlkE~~~INkSL~aLg~ 285 (388)
T 3bfn_A 213 VGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSED-----NRRTGNKG--LRLKESGAINTSLFVLGK 285 (388)
T ss_dssp --------CGGGSEEEEEEEEEEEESSTTCCEEEEEEEEEECCCTTC---------------------CCCCHHHHHHHH
T ss_pred cccccCCCCCCCCeEEEEEEEEEeccCCCCceeEEEEEEEECCCCcc-----cccccCcc--chhHHHhHhhhhHHHHHH
Confidence 9999998 999999998654322222234568899999999999 55566666 999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhhHHH
Q psy5719 347 QMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 347 vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||+||++. +.+.++||+-+
T Consensus 286 vI~aL~~~--~~hVPYRdSkL 304 (388)
T 3bfn_A 286 VVDALNQG--LPRVPYRDSKL 304 (388)
T ss_dssp HHHHHHTT--CSCCCGGGSHH
T ss_pred HHHHHhcC--CCCCcCcccHH
Confidence 99999875 45899999864
No 7
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=5.7e-60 Score=464.74 Aligned_cols=236 Identities=32% Similarity=0.482 Sum_probs=197.8
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|+||+||+++++|++||+.+++|+|+++|+|||+||||||||||||||||.|...
T Consensus 65 ~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~-------------------- 124 (372)
T 3b6u_A 65 EMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG-------------------- 124 (372)
T ss_dssp CCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTT--------------------
T ss_pred CCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCC--------------------
Confidence 346899999999999999999999999999999999999999999999999999998632
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc-cCCCcccccCCC
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS-KVNLSVHEDKNR 237 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~-~~~L~i~ed~~~ 237 (378)
++..+||+||++.+||..+.. ...+.|.|++||+|||||.|+|||++. ...|.+++|+.+
T Consensus 125 ------------------~~~~~Giipr~~~~lF~~i~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~e~~~~ 185 (372)
T 3b6u_A 125 ------------------DPEKRGVIPNSFDHIFTHISR-SQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDT 185 (372)
T ss_dssp ------------------SGGGBCHHHHHHHHHHHHHHT-CSSCEEEEEEEEEEEETTEEEETTSSCTTCCBCEEEETTT
T ss_pred ------------------CcccCCcHHHHHHHHHHHhhh-ccCCceEEEEEEEEEeCCEEEECCCCCCCCCceEEECCCC
Confidence 234569999999999999976 567899999999999999999999975 467999999999
Q ss_pred CcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh--hhccccchHHHHHHh
Q psy5719 238 VPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK--EAENKKRSLEECVDA 308 (378)
Q Consensus 238 ~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~--e~~~in~Sll~lVDL 308 (378)
+++| .+++++.+.|.++++.++..| |+++.|.|| |||+||++........ ....+..|+|+||||
T Consensus 186 ~v~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~skL~lVDL 259 (372)
T 3b6u_A 186 GVYV------KDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDL 259 (372)
T ss_dssp EEEE------TTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----CCCEEEEEEEEEEC
T ss_pred cEec------CCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCCcceEEEEEEEEEC
Confidence 9998 799999999999999999987 999999998 9999999986543321 122356789999999
Q ss_pred hcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 309 AGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||| ..++++.| +|++|+++||+||++||+||.||++.. ..+.++||+-+
T Consensus 260 AGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~-~~hvPyRdSkL 310 (372)
T 3b6u_A 260 AGSER-----QAKTGAQG--ERLKEATKINLSLSALGNVISALVDGK-STHIPYRDSKL 310 (372)
T ss_dssp CCCCE-----------------EEEGGGCCHHHHHHHHHHHHHHCC----CCCGGGSHH
T ss_pred CCCcc-----ccccCcch--hhhhhHhhhhhhHHHHHHHHHHHhcCC-CCCCcccccHH
Confidence 99999 55566666 999999999999999999999999743 45889999854
No 8
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=4.7e-60 Score=462.60 Aligned_cols=231 Identities=27% Similarity=0.381 Sum_probs=184.3
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||.|..
T Consensus 54 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~---------------------- 111 (350)
T 2vvg_A 54 VPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNK---------------------- 111 (350)
T ss_dssp --EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCS----------------------
T ss_pred CceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCC----------------------
Confidence 4688999999999999999999999999999999999999999999999999999852
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
..+||+||++.+||+.+......+.|.|++||+|||||.++|||+ ....|.+++|+.+++
T Consensus 112 -------------------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~-~~~~l~i~e~~~~~~ 171 (350)
T 2vvg_A 112 -------------------EEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGI 171 (350)
T ss_dssp -------------------SSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTT-TEEEECEEEETTTEE
T ss_pred -------------------ccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEccc-CCcCceeeEcCCCCE
Confidence 345999999999999998777789999999999999999999998 456799999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhc-cccchHHHHHHhhcc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAE-NKKRSLEECVDALRE 311 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~-~in~Sll~lVDLAGS 311 (378)
+| .+++++.+.|.++++.++..| |+++.|.|| |||+||++........... .+..|+++|||||||
T Consensus 172 ~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~skl~lVDLAGS 245 (350)
T 2vvg_A 172 YV------DGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGS 245 (350)
T ss_dssp EE------TTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEEEEEEEEECCCC
T ss_pred Ee------cCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEEEEEEEEeCCCC
Confidence 98 799999999999999999987 999999998 9999999986544332222 255689999999999
Q ss_pred cchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 312 ECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 312 Era~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|| ..++++.| +|++|+++||+||++||+||.+|++.. .+.++||+-+
T Consensus 246 Er-----~~~t~~~g--~rl~E~~~IN~SL~aLg~vI~aL~~~~--~hvPyRdSkL 292 (350)
T 2vvg_A 246 ER-----QSKTGATG--ETLVEGAKINLSLSALGLVISKLVEGA--THIPYRDSKL 292 (350)
T ss_dssp CC----------------------CTTHHHHHHHHHHHHHHHTC--SSCCGGGCHH
T ss_pred Cc-----cccccccH--HHHHHHHHHhHHHHHHHHHHHHHHcCC--CCCCccccHH
Confidence 99 55566666 999999999999999999999999864 7899999864
No 9
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=2.1e-59 Score=461.15 Aligned_cols=237 Identities=27% Similarity=0.449 Sum_probs=199.9
Q ss_pred CCCeeEecccccCCC--------CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhh
Q psy5719 79 GKGKFYLFDKVFKPN--------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVL 150 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~--------~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l 150 (378)
...+.|+||+||+++ ++|++||+.++.|+|+++++|||+||||||||||||||||+|...
T Consensus 45 ~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~------------ 112 (366)
T 2zfi_A 45 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQE------------ 112 (366)
T ss_dssp SCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSG------------
T ss_pred CCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCc------------
Confidence 356899999999987 899999999999999999999999999999999999999998521
Q ss_pred hcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccc-cCC
Q psy5719 151 AGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVS-KVN 228 (378)
Q Consensus 151 ~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~-~~~ 228 (378)
...+||+||++.+||+.+... ...+.|.|++||+|||||.|+|||++. ...
T Consensus 113 ---------------------------~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~~ 165 (366)
T 2zfi_A 113 ---------------------------KDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGN 165 (366)
T ss_dssp ---------------------------GGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTTTCSC
T ss_pred ---------------------------cCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccccCCC
Confidence 134599999999999999764 356899999999999999999999976 457
Q ss_pred CcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhc---cc
Q psy5719 229 LSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAE---NK 298 (378)
Q Consensus 229 L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~---~i 298 (378)
|.+++|+.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||+|...+....... ..
T Consensus 166 l~ire~~~~g~~v------~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 239 (366)
T 2zfi_A 166 LRVREHPLLGPYV------EDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTE 239 (366)
T ss_dssp BCEEEETTTEEEE------TTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTTTCEEE
T ss_pred ceEEEcCCCCEEE------eCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCCCccce
Confidence 9999999999988 799999999999999999987 999999999 9999999986644332221 23
Q ss_pred cchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHh----------hhhhhhhhhHHH
Q psy5719 299 KRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH----------QKQVAELRDEIA 367 (378)
Q Consensus 299 n~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~----------~~~~~~~~d~~~ 367 (378)
..|+|+||||||||| ..++++.| +|++|+++||+||++||+||.+|++.. ...+.++||+-+
T Consensus 240 ~~skL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkL 311 (366)
T 2zfi_A 240 KVSKISLVDLAGSER-----ADSTGAKG--TRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVL 311 (366)
T ss_dssp EEEEEEEEECCCGGG-----C------C--CCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHH
T ss_pred eEeEEEEEeCCCCcc-----ccccCCCc--cchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHH
Confidence 468899999999999 55556666 999999999999999999999999964 457899999864
No 10
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=6.2e-60 Score=463.17 Aligned_cols=233 Identities=27% Similarity=0.365 Sum_probs=183.4
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
+++.|+||+||+++++|++||+.++.|+|+++|+|||+||||||||||||||||+|..
T Consensus 70 ~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~---------------------- 127 (355)
T 3lre_A 70 KDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSA---------------------- 127 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCS----------------------
T ss_pred CCceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCC----------------------
Confidence 4568999999999999999999999999999999999999999999999999999852
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
..+||+||++.+||+.+........|.|++||+|||||.++|||.+ ..+|.+++|+.+++
T Consensus 128 -------------------~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~-~~~l~ire~~~~~~ 187 (355)
T 3lre_A 128 -------------------DEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVN-SGPLAVREDTQKGV 187 (355)
T ss_dssp -------------------SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEEEESSSC-CCCBEEEECTTSCE
T ss_pred -------------------CCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEEEECcCC-CCCceeEEcCCCCE
Confidence 3349999999999999988777889999999999999999999985 45799999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhh--hccccchHHHHHHhhc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKE--AENKKRSLEECVDALR 310 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e--~~~in~Sll~lVDLAG 310 (378)
+| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...+..... ......|+++||||||
T Consensus 188 ~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skl~lVDLAG 261 (355)
T 3lre_A 188 VV------HGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAG 261 (355)
T ss_dssp EE------ETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEEEEEEEEEEEETTSCTTCCCCCEEEEEEECCC
T ss_pred Ee------eeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcEEEEEEEEEecCCCCCCCCEEEEEEEEEECCC
Confidence 98 799999999999999999988 999999998 99999999866433222 2224568899999999
Q ss_pred ccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHH
Q psy5719 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 311 SEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
||| ..++++.| +|++|+++||+||++||+||+||++... .++.++||+-+
T Consensus 262 SEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkL 312 (355)
T 3lre_A 262 SER-----ASTSGAKG--TRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKL 312 (355)
T ss_dssp CCC------------------------CHHHHHHHHHHHHHC--------CCGGGSHH
T ss_pred CCc-----CcCCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccCHH
Confidence 999 55566666 9999999999999999999999998754 46999999854
No 11
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=2.6e-59 Score=458.42 Aligned_cols=236 Identities=35% Similarity=0.508 Sum_probs=209.1
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|...+
T Consensus 45 ~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~-------------------- 104 (355)
T 1goj_A 45 AQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSID-------------------- 104 (355)
T ss_dssp CCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTT--------------------
T ss_pred CccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCC--------------------
Confidence 467899999999999999999999999999999999999999999999999999995221
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
++..+||+||++.+||+.+......+.|.|++||+|||||.++|||++....+.+++|+.+++
T Consensus 105 -----------------~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~~~g~ 167 (355)
T 1goj_A 105 -----------------DPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGV 167 (355)
T ss_dssp -----------------STTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEETTTEE
T ss_pred -----------------CcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcCCCCE
Confidence 235569999999999999987777899999999999999999999999888999999999999
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhccc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSE 312 (378)
+| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...+.... .+....|+|+||||||||
T Consensus 168 ~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL~lVDLAGSE 240 (355)
T 1goj_A 168 YV------KGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVE-TGSAKSGQLFLVDLAGSE 240 (355)
T ss_dssp EE------TTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETT-TTEEEEEEEEEEECCCCS
T ss_pred ee------cCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccC-CCceeeeEEEEEECCCCC
Confidence 98 799999999999999999987 999999998 9999999986544332 233556889999999999
Q ss_pred chhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 313 ra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
| ..++++.| ++++|+++||+||++||+||.+|++.. ..+.++||+-+
T Consensus 241 r-----~~~t~~~g--~rl~E~~~IN~SL~aLg~vI~aL~~~~-~~hvPyRdSkL 287 (355)
T 1goj_A 241 K-----VGKTGASG--QTLEEAKKINKSLSALGMVINALTDGK-SSHVPYRDSKL 287 (355)
T ss_dssp C-----CTTSSSCC--CCTTTTGGGTSHHHHHHHHHHHHHHCS-CSCCCGGGCHH
T ss_pred c-----ccccccch--hhHHHHHhhhhHHHHHHHHHHHHhcCC-CCCCCCccCHH
Confidence 9 45556666 999999999999999999999999753 46889999754
No 12
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=4.9e-60 Score=469.37 Aligned_cols=273 Identities=25% Similarity=0.303 Sum_probs=208.0
Q ss_pred HHHHHHHHhHhhhhhhHHH---HhhhcceeccccccCC-----CC---------CcC------------CCCeeEecccc
Q psy5719 39 LKEAKEGAMKDRKRYQYEV---DRIKEAVRQKNLARRG-----PA---------PQI------------GKGKFYLFDKV 89 (378)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~---------~~~------------~~~~~F~FD~V 89 (378)
+...|+.++..|+..+++. ..|++++|++|+...+ .. ..+ ...+.|+||+|
T Consensus 49 ~i~~~r~~~~~~~~~~~~~~~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~V 128 (410)
T 1v8k_A 49 MIKEFRVTMECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFA 128 (410)
T ss_dssp HHHHHHHHHTCCTTTTTCTTSCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEE
T ss_pred HHHHHHHhhccCCCccCCcCCCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEE
Confidence 4457888899999887654 5689999999875421 10 000 02368999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcc
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTH 169 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~ 169 (378)
|+++++|++||+.++.|+|+++|+|||+||||||||||||||||.|....+
T Consensus 129 F~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~----------------------------- 179 (410)
T 1v8k_A 129 FDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK----------------------------- 179 (410)
T ss_dssp ECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC--------------------------------
T ss_pred EecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCC-----------------------------
Confidence 999999999999999999999999999999999999999999999953211
Q ss_pred cccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceee
Q psy5719 170 TMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVA 248 (378)
Q Consensus 170 tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~ 248 (378)
.....+||+|+++.+||..+... ...+.|.|++||+|||||.|+|||++. ..|.+++|+.++++| .
T Consensus 180 ------~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~-~~l~i~ed~~~~v~V------~ 246 (410)
T 1v8k_A 180 ------SQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKK-AKLRVLEDSRQQVQV------V 246 (410)
T ss_dssp -------CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTTTT-EEEEEEECSSCCEEE------E
T ss_pred ------CccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCCCC-CCceEEECCCCCeEe------c
Confidence 11234699999999999988653 246889999999999999999999864 579999999999998 7
Q ss_pred eecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhh
Q psy5719 249 RCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQ 321 (378)
Q Consensus 249 ~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~ 321 (378)
+++++.|.|.++++.++..| |+++.|.|| |||+||++..... ....|+++||||||||| ..+
T Consensus 247 gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~skL~lVDLAGSER-----~~~ 315 (410)
T 1v8k_A 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTK------GRLHGKFSLVDLAGNER-----GAD 315 (410)
T ss_dssp TCCCEEESSHHHHHHHHHHHHHTCC--------CCCSSEEEEEEEEESS------SSEEEEEEEEECCCCCC--------
T ss_pred CCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCCCCceEEEEEEEEeC------CcceeEEEEEECCCccc-----ccc
Confidence 99999999999999999988 999999998 9999999985432 24568899999999999 333
Q ss_pred hhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 322 VTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 322 ~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
++.. ++++++|+++||+||++||+||.||+.. +.+.++||+-+
T Consensus 316 t~~~-~~~~~~E~~~INkSL~aLg~vI~aL~~~--~~hIPYRdSKL 358 (410)
T 1v8k_A 316 TSSA-DRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKL 358 (410)
T ss_dssp ----------TTHHHHHHHHHHHHHHHHHHTC--------CCCCHH
T ss_pred cccc-ccchhHHHHHHhHHHHHHHHHHHHHhcC--CCCCCcccchh
Confidence 3322 2478899999999999999999999854 57899998753
No 13
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=3.4e-59 Score=456.70 Aligned_cols=261 Identities=26% Similarity=0.372 Sum_probs=198.2
Q ss_pred HhhhcceeccccccCC---------------CCCcCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeee
Q psy5719 58 DRIKEAVRQKNLARRG---------------PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAY 122 (378)
Q Consensus 58 ~~~~~~~~~~~~~~~~---------------~~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ay 122 (378)
..|++++|++|+...+ +....+.++.|+||+||+++++|++||+.++.|+|+++|+|||+|||||
T Consensus 11 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAY 90 (344)
T 4a14_A 11 APVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAY 90 (344)
T ss_dssp CCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEETTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEE
T ss_pred cceEEEEEecccchHHHhccCeeEEEEcCCCceEEecccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEe
Confidence 3466777777654321 1233467899999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccc
Q psy5719 123 GQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENL 202 (378)
Q Consensus 123 G~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~ 202 (378)
|||||||||||.|..... ..++.+||+||++.+||+.+... ..+
T Consensus 91 GqTGSGKTyTm~G~~~~~-----------------------------------~~~~~~Giipr~~~~lF~~i~~~-~~~ 134 (344)
T 4a14_A 91 GQTGSGKTYTMGEASVAS-----------------------------------LLEDEQGIVPRAMAEAFKLIDEN-DLL 134 (344)
T ss_dssp SSTTSSHHHHHCC-------------------------------------------CCCCHHHHHHHHHHHHHHHC-TTS
T ss_pred cccCCCceEeecccchhh-----------------------------------hhhcccCCchHHHHHHHHhcccc-cce
Confidence 999999999999852211 11245699999999999999764 678
Q ss_pred eeEEEEeeeeeeccccccccccc--cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc
Q psy5719 203 EFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL 277 (378)
Q Consensus 203 ~~~V~vS~~EIYnE~i~DLL~~~--~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln 277 (378)
.|.|++||+|||||.++|||++. ..++.+++|+.++++| .+++++.|.|.++++.++..| |+++.|.||
T Consensus 135 ~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~e~~~~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N 208 (344)
T 4a14_A 135 DCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVL------CGVKEVDVEGLDEVLSLLEMGNAARHTGATHLN 208 (344)
T ss_dssp EEEEEEEEEEEETTEEEETTSSCCCGGGCEEEECTTSCEEE------ESCCCEECCSHHHHHHHHHHHHHHHHC------
T ss_pred eeEEEEehhhhhHHHHHHHHHhccccccceeeeccCCCEEE------EeeeeccccCHHHHHHHHHhcchhcccCcchhh
Confidence 99999999999999999999853 4679999999999998 799999999999999999987 999999998
Q ss_pred ----chhhHHHHhhhhhhhh-------hhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHH
Q psy5719 278 ----LSHHEARMKSLQESMK-------EAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ 346 (378)
Q Consensus 278 ----rSH~if~i~~~~~~l~-------e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~ 346 (378)
|||+||++...+.... .......|+++||||||||| ..++++.| +|++|+.+||+||++||+
T Consensus 209 ~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~~~~skl~lVDLAGSEr-----~~~t~~~g--~rl~E~~~IN~SL~aLg~ 281 (344)
T 4a14_A 209 HLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSER-----VLKTGSTG--ERLKESIQINSSLLALGN 281 (344)
T ss_dssp CCGGGSEEEEEEEEEEEC------------CEEEEEEEEEECCCCCC-----C----------------CCCSHHHHHHH
T ss_pred hcccccceEEEEEeeeCCCCcccCCCccccceeeeeeeEEecccchh-----hcccCCch--hhhhhheeechhHHhhhh
Confidence 9999999986643221 11224568899999999999 55566666 999999999999999999
Q ss_pred HHHHHHHHhh-hhhhhhhhHHH
Q psy5719 347 QMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 347 vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
||.+|++... ..+.++||+-+
T Consensus 282 vI~aL~~~~~~~~hvPyRdSkL 303 (344)
T 4a14_A 282 VISALGDPQRRGSHIPYRDSKI 303 (344)
T ss_dssp HHHHHTCTTTTTSCCCGGGCHH
T ss_pred HHHhcCCccccCCCCCcchhhH
Confidence 9999998653 46899999864
No 14
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.8e-59 Score=462.62 Aligned_cols=271 Identities=25% Similarity=0.309 Sum_probs=203.8
Q ss_pred HHHHHHhHhhhhhhHHH---HhhhcceeccccccCC-----CC---------CcC------------CCCeeEecccccC
Q psy5719 41 EAKEGAMKDRKRYQYEV---DRIKEAVRQKNLARRG-----PA---------PQI------------GKGKFYLFDKVFK 91 (378)
Q Consensus 41 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~---------~~~------------~~~~~F~FD~Vf~ 91 (378)
..|+.++..|+..+++. ..|++++|++|+...+ +. ..+ ...+.|+||+||+
T Consensus 31 ~~~r~~~~~~~~~~~~~~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~ 110 (387)
T 2heh_A 31 KEFRATLECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFD 110 (387)
T ss_dssp HHHHHHCCCBCCCTTSCCCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEEC
T ss_pred HHHHHhhccCCCccCCCCCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEe
Confidence 34666699999887655 4588999999875421 10 000 0236899999999
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccc
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTM 171 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm 171 (378)
++++|++||+.++.|+|+++|+|||+||||||||||||||||.|....+
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~------------------------------- 159 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK------------------------------- 159 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-------------------------------------
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCC-------------------------------
Confidence 9999999999999999999999999999999999999999999952211
Q ss_pred cccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeee
Q psy5719 172 EGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARC 250 (378)
Q Consensus 172 ~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~ 250 (378)
.....+||+|+++.+||..+... ...+.|.|++||+|||||.|+|||++. ..+.+++|+.++++| .++
T Consensus 160 ----~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL~~~-~~l~i~ed~~~~v~v------~gl 228 (387)
T 2heh_A 160 ----AQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKK-AKLRVLEDGKQQVQV------VGL 228 (387)
T ss_dssp ---------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETTTTT-EECEEEECTTCCEEE------ETC
T ss_pred ----CcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECCCCC-ccceEEEcCCCCEEe------cCC
Confidence 11245699999999999988653 246789999999999999999999864 579999999999998 799
Q ss_pred cccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhh
Q psy5719 251 TSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVT 323 (378)
Q Consensus 251 T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~ 323 (378)
+++.|.|.++++.++..| |+++.|.|| |||+||+|..... ....|+++||||||||| ..+++
T Consensus 229 ~~~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~------~~~~skL~lVDLAGSER-----~~~t~ 297 (387)
T 2heh_A 229 QEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAK------GRMHGKFSLVDLAGNER-----GADTS 297 (387)
T ss_dssp CCEEESSHHHHHHHHHHHHHHC---------CGGGSEEEEEEEEESS------SSEEEEEEEEECCCCC-----------
T ss_pred EEEEeCCHHHHHHHHHHHHhhCCcccCcCcCCcccceEEEEEEEEEC------CeeeeEEEEEECCCCcc-----ccccc
Confidence 999999999999999987 999999998 9999999985432 24568899999999999 33333
Q ss_pred hcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 324 AVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 324 ~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
.. ++++++|+++||+||++||+||.||++ .+.+.++||+-+
T Consensus 298 ~~-~~~~~~E~~~INkSL~aLg~vI~aL~~--~~~hvPYRdSKL 338 (387)
T 2heh_A 298 SA-DRQTRMEGAEINKSLLALKECIRALGQ--NKAHTPFRESKL 338 (387)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHT--TCSCCCGGGSHH
T ss_pred cc-cccchhhHHHHhHHHHHHHHHHHHHhc--CCCCCCccccHH
Confidence 22 257889999999999999999999996 457899999864
No 15
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.9e-59 Score=450.52 Aligned_cols=252 Identities=26% Similarity=0.365 Sum_probs=206.9
Q ss_pred HhhhcceeccccccCCCC-------C-------------cCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCc
Q psy5719 58 DRIKEAVRQKNLARRGPA-------P-------------QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNG 117 (378)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~-------~-------------~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~ 117 (378)
..|++++|++|+...+.. . ..++.+.|+||+||+|+++|++||+. +.|+|+++++|||+
T Consensus 4 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~ 82 (330)
T 2h58_A 4 GNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQE-VQALVTSCIDGFNV 82 (330)
T ss_dssp -CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTT-THHHHHHHHTTCCE
T ss_pred CCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHH-HHHHHHHHhCCCEE
Confidence 457788888886543210 0 01345689999999999999999998 59999999999999
Q ss_pred ceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 118 TIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
||||||||||||||||.|.. ..+||+||++.+||+.+..
T Consensus 83 tifAYGqTGSGKTyTm~G~~-----------------------------------------~~~Giipr~~~~lF~~i~~ 121 (330)
T 2h58_A 83 CIFAYGQTGAGKTYTMEGTA-----------------------------------------ENPGINQRALQLLFSEVQE 121 (330)
T ss_dssp EEEEESSTTSSHHHHHTBCS-----------------------------------------SSBCHHHHHHHHHHHHHHT
T ss_pred EEEeECCCCCCCcEEEecCC-----------------------------------------CCCcHHHHHHHHHHHhhhc
Confidence 99999999999999999852 3359999999999999988
Q ss_pred ccccceeEEEEeeeeeecccccccccccc-C--CCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHh
Q psy5719 198 MDENLEFIIKVSYFEIYMDKIRDLLDVSK-V--NLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KEL 271 (378)
Q Consensus 198 ~~~~~~~~V~vS~~EIYnE~i~DLL~~~~-~--~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~ 271 (378)
....+.|.|++||+|||||.++|||++.. . .+.+++|+.++++| .+++++.+.|.++++.++..| |++
T Consensus 122 ~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~~~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~ 195 (330)
T 2h58_A 122 KASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYV------PGLTEFQVQSVDDINKVFEFGHTNRTT 195 (330)
T ss_dssp SCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTTSSCCEEC------TTCCCEEECSHHHHHHHHHHHHHHTTC
T ss_pred ccCCceEEEEEEEEEEECCChhhcccccccccceEEEeecCCCCEec------CCCEEEEeCCHHHHHHHHHHHHhhCCc
Confidence 77789999999999999999999998653 2 34555788888888 799999999999999999987 999
Q ss_pred hhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHH
Q psy5719 272 GETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347 (378)
Q Consensus 272 ~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~v 347 (378)
+.|.|| |||+||++...+... ..+....|+++||||||||| ..++++.| +|++|+++||+||++||+|
T Consensus 196 ~~T~~N~~SSRSH~if~i~v~~~~~-~~~~~~~skL~lVDLAGSEr-----~~~t~~~g--~r~~E~~~IN~SL~aLg~v 267 (330)
T 2h58_A 196 EFTNLNEHSSRSHALLIVTVRGVDC-STGLRTTGKLNLVDLAGSER-----VGKSGAEG--SRLREAQHINKSLSALGDV 267 (330)
T ss_dssp TTCCSCSCGGGSEEEEEEEEEEEET-TTTEEEEEEEEEEECCCCCC-----CC--------HHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCcCCccEEEEEEEEEEec-CCCcEEEEEEEEEeCCCCCc-----ccccCCch--hhhHHHHHhhHhHHHHHHH
Confidence 999998 999999998654322 12234568899999999999 45555555 9999999999999999999
Q ss_pred HHHHHHHhhhhhhhhhhHHH
Q psy5719 348 MDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 348 i~aL~~~~~~~~~~~~d~~~ 367 (378)
|.||++. +++.++||+-+
T Consensus 268 I~aL~~~--~~hvPyRdSkL 285 (330)
T 2h58_A 268 IAALRSR--QGHVPFRNSKL 285 (330)
T ss_dssp HHHHHTT--CSCCCGGGSHH
T ss_pred HHHHhcC--CCCCcccccHH
Confidence 9999864 57899999754
No 16
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=4.9e-59 Score=458.00 Aligned_cols=230 Identities=27% Similarity=0.391 Sum_probs=204.1
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||+|+.
T Consensus 45 ~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~---------------------- 101 (369)
T 3cob_A 45 KAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGAD---------------------- 101 (369)
T ss_dssp CEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCS----------------------
T ss_pred CceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCC----------------------
Confidence 45899999999999999999999 7999999999999999999999999999999852
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc---cCCCcccccCC
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKN 236 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~---~~~L~i~ed~~ 236 (378)
..+||+||++.+||+.+......+.|.|++||+|||||.++|||.+. ...|.+++|+.
T Consensus 102 -------------------~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~~ 162 (369)
T 3cob_A 102 -------------------SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSK 162 (369)
T ss_dssp -------------------SSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECTT
T ss_pred -------------------CCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECCC
Confidence 33599999999999999887677899999999999999999999874 35799999999
Q ss_pred CCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhh
Q psy5719 237 RVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDAL 309 (378)
Q Consensus 237 ~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLA 309 (378)
++++| .+++++.+.|.++++.++..| |+++.|.|| |||+||++........ ......|+|+|||||
T Consensus 163 ~~~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~skL~lVDLA 235 (369)
T 3cob_A 163 GMVSV------ENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQ-TQAIARGKLSFVDLA 235 (369)
T ss_dssp SCEEE------ETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETT-TCCEEEEEEEEEECC
T ss_pred CCEEc------cCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCC-CCcEEEEEEEEEeCC
Confidence 99998 799999999999999999987 999999998 9999999986543322 233567899999999
Q ss_pred cccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 310 REECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 310 GSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|||| ..++++.| +|++|+++||+||++||+||.+|++. +++.++||+-+
T Consensus 236 GSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkL 284 (369)
T 3cob_A 236 GSER-----VKKSGSAG--NQLKEAQSINKSLSALGDVISALSSG--NQHIPYRNHKL 284 (369)
T ss_dssp CSSC-----CCCCSSCS--HHHHHHHHHTHHHHHHHHHHHHHHTT--CSCCCGGGCHH
T ss_pred CCCc-----ccccCccc--hhhHHHHHHHHHHHHHHHHHHHHhcC--CCcCCCcCCHH
Confidence 9999 45555556 99999999999999999999999975 57899999864
No 17
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=9.8e-59 Score=454.53 Aligned_cols=235 Identities=27% Similarity=0.450 Sum_probs=181.8
Q ss_pred CCCeeEeccccc--------CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhh
Q psy5719 79 GKGKFYLFDKVF--------KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVL 150 (378)
Q Consensus 79 ~~~~~F~FD~Vf--------~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l 150 (378)
+..+.|+||+|| ++.++|++||+.++.|+|+++|+|||+||||||||||||||||+|..
T Consensus 48 ~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~------------- 114 (354)
T 3gbj_A 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTA------------- 114 (354)
T ss_dssp -CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCS-------------
T ss_pred CCceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCC-------------
Confidence 457899999999 46789999999999999999999999999999999999999999852
Q ss_pred hcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccc--cC
Q psy5719 151 AGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVS--KV 227 (378)
Q Consensus 151 ~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~--~~ 227 (378)
+.+||+||++.+||+.+... ...+.|.|+|||+|||||.++|||++. ..
T Consensus 115 ----------------------------~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~ 166 (354)
T 3gbj_A 115 ----------------------------DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQ 166 (354)
T ss_dssp ----------------------------SSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC------
T ss_pred ----------------------------CCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccCCCCCCc
Confidence 33499999999999988643 457889999999999999999999875 46
Q ss_pred CCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh---hhcc
Q psy5719 228 NLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK---EAEN 297 (378)
Q Consensus 228 ~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~---e~~~ 297 (378)
.|.+++|+.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||++...+.... ....
T Consensus 167 ~l~i~e~~~~g~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~ 240 (354)
T 3gbj_A 167 TLKVREHSVLGPYV------DGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSG 240 (354)
T ss_dssp CBCBC------CCB------TTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEECTTSCEEE
T ss_pred ceEEEEcCCCCEEE------EeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecccCCCCCC
Confidence 89999999999988 799999999999999999988 999999998 9999999986543211 1122
Q ss_pred ccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHh----hhhhhhhhhHHH
Q psy5719 298 KKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH----QKQVAELRDEIA 367 (378)
Q Consensus 298 in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~----~~~~~~~~d~~~ 367 (378)
...|+|+||||||||| ..++++.| +|++|+++||+||++||+||++|++.. .+++.++||+-+
T Consensus 241 ~~~skL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkL 307 (354)
T 3gbj_A 241 EKVGKLSLVDLAGSER-----ATKTGAAG--DRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVL 307 (354)
T ss_dssp EEEEEEEEEECCCCCC-----CCCCC--------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHH
T ss_pred eeEEEEEEEECCCCCc-----hhhcCCcc--ccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHH
Confidence 4568899999999999 45555555 999999999999999999999999864 456899999864
No 18
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-58 Score=451.95 Aligned_cols=255 Identities=26% Similarity=0.316 Sum_probs=192.1
Q ss_pred HhhhcceeccccccCCCCC------------------------cCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhc
Q psy5719 58 DRIKEAVRQKNLARRGPAP------------------------QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA 113 (378)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~ 113 (378)
..|++++|++|+...+... .....+.|+||+||+ +++|++||+.+++|+|+++|+
T Consensus 24 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~~l~ 102 (359)
T 3nwn_A 24 KKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALD 102 (359)
T ss_dssp CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHT
T ss_pred CCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHHHhC
Confidence 4688999999865432110 012345799999997 689999999999999999999
Q ss_pred cCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHh
Q psy5719 114 GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFN 193 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~ 193 (378)
|||+||||||||||||||||+|... ++..+||+||++.+||+
T Consensus 103 G~N~tifAYGQTGSGKTyTM~G~~~--------------------------------------~~~~~Giipra~~~lF~ 144 (359)
T 3nwn_A 103 GYNGTIMCYGQTGAGKTYTMMGATE--------------------------------------NYKHRGILPRALQQVFR 144 (359)
T ss_dssp TCCEEEEEEESTTSSHHHHHTBCSS--------------------------------------CGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCCccEEeCCccC--------------------------------------CccchhhHHHHHHHHHH
Confidence 9999999999999999999998632 22456999999999999
Q ss_pred hhhcccccceeEEEEeeeeeeccccccccccc------cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHH
Q psy5719 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS------KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEY 267 (378)
Q Consensus 194 ~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~------~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~ 267 (378)
.+.. .+.+.|.|++||+|||||.++|||++. ...+.+++++. ++++ .+++++.+.|.++++.++..
T Consensus 145 ~~~~-~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~~~~-g~~v------~~l~~~~v~s~~e~~~ll~~ 216 (359)
T 3nwn_A 145 MIEE-RPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQ-GVFI------KGLSVHLTSQEEDAFSLLFE 216 (359)
T ss_dssp HHHT-CTTSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEETT-EEEE------ETCCCEECSSHHHHHHHHHH
T ss_pred Hhhc-CCCCcEEEEEEEEEEeccccccccccccccccccccceEEecCC-ceEE------eccEEEEecCHHHHHHHHHh
Confidence 8866 467899999999999999999999853 33466777765 4666 78999999999999999998
Q ss_pred H---HHhhhhhcc----chhhHHHHhhhhhhh-hhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHH
Q psy5719 268 E---KELGETRLL----LSHHEARMKSLQESM-KEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANE 339 (378)
Q Consensus 268 g---r~~~~t~ln----rSH~if~i~~~~~~l-~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~ 339 (378)
| |+++.|.|| |||+||++....... ........|+|+||||||||| ..++++.| +|++|+++||+
T Consensus 217 g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~skL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~IN~ 289 (359)
T 3nwn_A 217 GETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSER-----LGKSGSEG--QVLKEATYINK 289 (359)
T ss_dssp HHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEEECCCCC-----------------------CCST
T ss_pred hhhhcccccccCccccCcceEEEEEEEEeecccccCcccccccceeeecccccc-----ccccCCch--hHHHhhhhhcc
Confidence 7 999999998 999999998653322 223335678999999999999 55555556 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 340 VKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 340 SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||++||+||.||++.. +.+.++||+-+
T Consensus 290 SL~~Lg~vI~aL~~~~-~~hVPYRdSkL 316 (359)
T 3nwn_A 290 SLSFLEQAIIALGDQK-RDHIPFRQCKL 316 (359)
T ss_dssp HHHHHHHHHHHHHC------CCGGGSHH
T ss_pred cHHHHHHHHHHHHhcC-CCcCCcccCHH
Confidence 9999999999999754 46889999753
No 19
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=4.5e-58 Score=452.45 Aligned_cols=243 Identities=24% Similarity=0.371 Sum_probs=187.7
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|+||+||+|+++|++||+.++.|+|+++|+|||+||||||||||||||||+|....+..
T Consensus 64 ~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~---------------- 127 (373)
T 2wbe_C 64 KLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELK---------------- 127 (373)
T ss_dssp TTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSS----------------
T ss_pred CCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCcccccc----------------
Confidence 3468999999999999999999999999999999999999999999999999999997432210
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc-cCCCcccccC--
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS-KVNLSVHEDK-- 235 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~-~~~L~i~ed~-- 235 (378)
....++..+||+||++.+||+.+.. ..+.|.|++||+|||||.|+|||++. ...+.+++|+
T Consensus 128 --------------~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~~ 191 (373)
T 2wbe_C 128 --------------SSWEDDSDIGIIPRALSHLFDELRM--MEVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTK 191 (373)
T ss_dssp --------------SCSSCTTTBCHHHHHHHHHHHHHHH--CCSCEEEEEEEEEEETTEEEESSCTTSCSCCCEEECSSS
T ss_pred --------------ccccccCCCcChHHHHHHHHHHHHh--cCceEEEEEEEEEEeCCeEEECCCCCCCCCceeEeccCC
Confidence 0112345679999999999999865 35689999999999999999999875 3568888884
Q ss_pred CCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhh--hhhccccchHHHHH
Q psy5719 236 NRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESM--KEAENKKRSLEECV 306 (378)
Q Consensus 236 ~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l--~e~~~in~Sll~lV 306 (378)
.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||++....... ........|+|+||
T Consensus 192 ~g~v~v------~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~skL~lV 265 (373)
T 2wbe_C 192 KGSVII------QGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKLNLV 265 (373)
T ss_dssp SSCEEE------TTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTTCTTTCCEEEEEEEEEE
T ss_pred CCcEEe------cCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecCCCCCCcceeEEEEEEE
Confidence 466777 799999999999999999987 999999998 999999988543221 11122456899999
Q ss_pred HhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 307 DLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||||| ..++++. .++|++|+++||+||++||+||.||++. .++.++||+-+
T Consensus 266 DLAGSEr-----~~~t~~~-~g~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkL 318 (373)
T 2wbe_C 266 DLAGSEN-----VSKAGNE-KGIRVRETVNINQSLLTLGRVITALVDR--APHVPYRESKL 318 (373)
T ss_dssp ECCCC--------------------------CHHHHHHHHHHHHHHHC--SSCCCGGGCHH
T ss_pred ECCCCCc-----cccccCc-cccchhHHHHHHHHHHHHHHHHHHHHcC--CCcCccccchH
Confidence 9999999 4444444 1499999999999999999999999985 57899999864
No 20
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3e-58 Score=453.49 Aligned_cols=235 Identities=26% Similarity=0.370 Sum_probs=176.6
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+++++|++||+.+ .|+|+++|+|||+||||||||||||||||.|....
T Consensus 82 ~~~F~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~--------------------- 139 (376)
T 2rep_A 82 RHDFSFDRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG--------------------- 139 (376)
T ss_dssp -CEEECSEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSC---------------------
T ss_pred ceeeeecEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCC---------------------
Confidence 35799999999999999999985 69999999999999999999999999999996321
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccc-----cCCCccccc
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVS-----KVNLSVHED 234 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~-----~~~L~i~ed 234 (378)
++..+||+||++.+||+.+... ...+.|.|++||+|||||.|+|||++. ...+.++++
T Consensus 140 ----------------~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~ 203 (376)
T 2rep_A 140 ----------------DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRA 203 (376)
T ss_dssp ----------------CGGGBCHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEEEETTEEEETTCCC--------CCEEEC
T ss_pred ----------------CcccCCcHHHHHHHHHHHHHHhhcCCeEEEEEEEEEEEECCEeeEccccccccccCCCceEEec
Confidence 1245699999999999998764 356899999999999999999999874 346888888
Q ss_pred --CCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHH
Q psy5719 235 --KNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEEC 305 (378)
Q Consensus 235 --~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~l 305 (378)
+.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||++...+.... ......|+|+|
T Consensus 204 ~~~~~~~~v------~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~-~~~~~~skL~l 276 (376)
T 2rep_A 204 GPGSEELTV------TNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQISGEHSS-RGLQCGAPLSL 276 (376)
T ss_dssp ---CCCEEE------TTCCCEEECSHHHHHHHHHHHHHHHHHCC-----CGGGSEEEEEEEEEEEESS-SCCEEEEEEEE
T ss_pred cCCCCCEEE------CCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecC-CCcEEEeEEEE
Confidence 5778888 799999999999999999987 999999998 9999999986543221 12244688999
Q ss_pred HHhhcccchhhhhhhhhhhcc--hhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 306 VDALREECAKLKAAEQVTAVS--SKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 306 VDLAGSEra~~~~~e~~~~~~--~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|||||||| ..++++.| +.+|++|+++||+||++||+||.||++. +++.++||+-+
T Consensus 277 VDLAGSEr-----~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~--~~hVPYRdSkL 333 (376)
T 2rep_A 277 VDLAGSER-----LDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNK--ESHVPYRNSKL 333 (376)
T ss_dssp EECCCCC-----------------------------CHHHHHHHHHHHHTT--CSCCCGGGSHH
T ss_pred EECCCCcc-----cccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcC--CCccCCcCCHH
Confidence 99999999 45555555 4589999999999999999999999964 57899999864
No 21
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.1e-58 Score=454.87 Aligned_cols=240 Identities=29% Similarity=0.388 Sum_probs=190.0
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+++++|++||+.++.|+|+++++|||+||||||||||||||||+|....+..
T Consensus 54 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~------------------ 115 (359)
T 1x88_A 54 RKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEE------------------ 115 (359)
T ss_dssp EEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGC------------------
T ss_pred ceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCcccc------------------
Confidence 47899999999999999999999999999999999999999999999999999996332100
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeecccccccccccc---CCCcccccCC-
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK---VNLSVHEDKN- 236 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~---~~L~i~ed~~- 236 (378)
+. ....+.+||+||++.+||+.+.. ..+.|.|++||+|||||.|+|||++.. ..+.+++|+.
T Consensus 116 --------~~----~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~~~~~~ 181 (359)
T 1x88_A 116 --------YT----WEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRN 181 (359)
T ss_dssp --------SC----GGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEETTCTTSCTTCCBEEEEETTE
T ss_pred --------cc----ccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeeehhcccccccccceEEeccCC
Confidence 00 01112469999999999999865 568999999999999999999998754 4688999874
Q ss_pred -CCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhh--hhhccccchHHHHH
Q psy5719 237 -RVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESM--KEAENKKRSLEECV 306 (378)
Q Consensus 237 -~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l--~e~~~in~Sll~lV 306 (378)
++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||++....... ........|+|+||
T Consensus 182 ~~~v~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~~skL~lV 255 (359)
T 1x88_A 182 KRGVII------KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLV 255 (359)
T ss_dssp EEEEEE------ETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCEEE------cCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEecccCCCCceEEEEEEEEE
Confidence 56777 799999999999999999987 999999998 999999988653221 11222456899999
Q ss_pred HhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 307 DLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||||| ..++++.| +|++|+++||+||++||+||.||++. ..+.++||+-+
T Consensus 256 DLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~--~~hvPyRdSkL 307 (359)
T 1x88_A 256 DLAGSEN-----IGRSGAVD--KRAREAGNINQSLLTLGRVITALVER--TPHVPYRESKL 307 (359)
T ss_dssp ECCCCCC----------------------CCCHHHHHHHHHHHHHHTT--CSCCCGGGSHH
T ss_pred cCCCCCc-----ccccCCcc--cchHHHhhhhHHHHHHHHHHHHHhcC--CCCCccccchH
Confidence 9999999 55566666 99999999999999999999999974 57899999864
No 22
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=7.6e-58 Score=447.69 Aligned_cols=229 Identities=24% Similarity=0.386 Sum_probs=184.3
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+|+++|++||+. +.|+|+++++|||+||||||||||||||||+|.
T Consensus 52 ~~~f~FD~Vf~~~~~Q~~vf~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~------------------------ 106 (349)
T 3t0q_A 52 SYNFQFDMIFEPSHTNKEIFEE-IRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA------------------------ 106 (349)
T ss_dssp EEEEEESEEECTTCCHHHHHHH-HHHHHHGGGTTCEEEEEEECSTTSSHHHHHHST------------------------
T ss_pred ceeeecCEEECCCccHHHHHHH-HHHHHHHHHCCcceeEEEeCCCCCCCceEeCCC------------------------
Confidence 3589999999999999999998 579999999999999999999999999999873
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeecccccccccccc-----------CC
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVSK-----------VN 228 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~~-----------~~ 228 (378)
..||+||++.+||+.+... ...+.|.|++||+|||||.|+|||.+.. ..
T Consensus 107 -------------------~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~ 167 (349)
T 3t0q_A 107 -------------------GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQK 167 (349)
T ss_dssp -------------------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------------C
T ss_pred -------------------CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhcccccccccccccccccccc
Confidence 2399999999999988764 3568999999999999999999998642 45
Q ss_pred CcccccCC-CCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccc
Q psy5719 229 LSVHEDKN-RVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKR 300 (378)
Q Consensus 229 L~i~ed~~-~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~ 300 (378)
+.+++++. ++++| .+++++.+.|.++++.++..| |+++.|.|| |||+||+++..+.... .+....
T Consensus 168 ~~i~~~~~~~g~~v------~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~ 240 (349)
T 3t0q_A 168 HDIRHDHEKQGTYI------TNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLH-TGETSQ 240 (349)
T ss_dssp CCEEEETTTTEEEE------TTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETT-TCCEEE
T ss_pred ceeEEecCCCCEEE------eCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecC-CCCeeE
Confidence 77777754 46777 799999999999999999987 999999998 9999999996654332 223456
Q ss_pred hHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHH
Q psy5719 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 301 Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
|+|+||||||||| ..++++.| +|++|+++||+||++||+||.||++... +++.++||+-+
T Consensus 241 ~kL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkL 301 (349)
T 3t0q_A 241 GKLNLVDLAGSER-----INSSAVTG--ERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKL 301 (349)
T ss_dssp EEEEEEECCCCCC-----CC----CC--HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHH
T ss_pred EEEEEEeCCCCCc-----cccccCcc--ccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHH
Confidence 8899999999999 55566666 9999999999999999999999998654 35899999864
No 23
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=9e-58 Score=447.71 Aligned_cols=232 Identities=27% Similarity=0.344 Sum_probs=182.0
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAY 160 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ay 160 (378)
.+.|+||+||+ +++|++||+.++.|+|+++++|||+||||||||||||||||+|...+
T Consensus 70 ~~~F~fD~Vf~-~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~--------------------- 127 (358)
T 2nr8_A 70 DWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATEN--------------------- 127 (358)
T ss_dssp EEEEECSEEEE-SCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSC---------------------
T ss_pred ceEEECCeecC-CcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccc---------------------
Confidence 45799999995 89999999999999999999999999999999999999999986321
Q ss_pred cCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccc------cCCCccccc
Q psy5719 161 GQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS------KVNLSVHED 234 (378)
Q Consensus 161 gqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~------~~~L~i~ed 234 (378)
...+||+||++.+||+.+... ..+.|.|++||+|||||.++|||++. ..++.+++|
T Consensus 128 -----------------~~~~Giipra~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~l~i~e~ 189 (358)
T 2nr8_A 128 -----------------YKHRGILPRALQQVFRMIEER-PTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVEN 189 (358)
T ss_dssp -----------------GGGBCHHHHHHHHHHHHHHTC-TTSCEEEEEEEEEEETTEEEETTSSSTTSCTTTSCCEEEEE
T ss_pred -----------------cccCCcHHHHHHHHHHHHhhc-CCceEEEEEEEEEEeCCeeeECcCCccccCccCCceEEEEC
Confidence 234699999999999999763 56789999999999999999999863 457889999
Q ss_pred CCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh-hhccccchHHHHH
Q psy5719 235 KNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK-EAENKKRSLEECV 306 (378)
Q Consensus 235 ~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~-e~~~in~Sll~lV 306 (378)
+ .+++| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...+.... .......|+|+||
T Consensus 190 ~-~g~~v------~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~skL~lV 262 (358)
T 2nr8_A 190 P-QGVFI------KGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLV 262 (358)
T ss_dssp T-TEEEE------ETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEEEEEEEE
T ss_pred C-CceEe------cCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEeccCCCCCEEEEEEEEE
Confidence 8 56777 799999999999999999987 999999998 9999999986643322 2233457899999
Q ss_pred HhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 307 DLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||||| ..++++.| +|++|+++||+||++||+||.||++.. +.+.++||+-+
T Consensus 263 DLAGSEr-----~~~t~~~g--~rl~E~~~INkSL~aLg~vI~aL~~~~-~~hiPyRdSkL 315 (358)
T 2nr8_A 263 DLAGSER-----LGKSGSEG--QVLKEATYINKSLSFLEQAIIALGDQK-RDHIPFRQCKL 315 (358)
T ss_dssp ECCCCC-----------------------CCSTHHHHHHHHHHHHHC------CCGGGSHH
T ss_pred ECCCCCc-----ccccCCch--hhHHHHHHHHHHHHHHHHHHHHHHhCC-CCcCCCccCHH
Confidence 9999999 55556555 999999999999999999999998753 46889999864
No 24
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=4e-58 Score=461.34 Aligned_cols=234 Identities=31% Similarity=0.455 Sum_probs=188.8
Q ss_pred CCeeEecccccCC-------CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhc
Q psy5719 80 KGKFYLFDKVFKP-------NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAG 152 (378)
Q Consensus 80 ~~~~F~FD~Vf~~-------~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g 152 (378)
..+.|+||+||++ .++|++||+.++.|+|+++|+|||+||||||||||||||||+|..
T Consensus 94 ~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~--------------- 158 (443)
T 2owm_A 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTP--------------- 158 (443)
T ss_dssp CCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCT---------------
T ss_pred CCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCC---------------
Confidence 4689999999976 489999999999999999999999999999999999999998852
Q ss_pred ccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc---cccceeEEEEeeeeeeccccccccccc----
Q psy5719 153 YNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM---DENLEFIIKVSYFEIYMDKIRDLLDVS---- 225 (378)
Q Consensus 153 ~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~---~~~~~~~V~vS~~EIYnE~i~DLL~~~---- 225 (378)
..+||+||++.+||+.+... ..++.|.|+|||+|||||.|+|||++.
T Consensus 159 --------------------------~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~~ 212 (443)
T 2owm_A 159 --------------------------DQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNK 212 (443)
T ss_dssp --------------------------TSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEEEETTEEEETTSCCCSSC
T ss_pred --------------------------CCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCEeeEccCccccCC
Confidence 34599999999999998764 357899999999999999999999873
Q ss_pred -cCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhh---h
Q psy5719 226 -KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMK---E 294 (378)
Q Consensus 226 -~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~---e 294 (378)
...|.|+||+.++++| .+++++.|.|.++++.++..| |+++.|.|| |||+||+|...+.... .
T Consensus 213 ~~~~l~ire~~~~g~~V------~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~~~~~ 286 (443)
T 2owm_A 213 PPYYLKVRESPTEGPYV------KDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETD 286 (443)
T ss_dssp CCCCCEEEEETTTEEEE------ETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEEEEEEEEEEEEC------
T ss_pred cccccceeECCCCCEec------cCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCeEEEEEEEEEeecccCCC
Confidence 2459999999999998 799999999999999999988 999999998 9999999986543221 1
Q ss_pred hccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh------------------
Q psy5719 295 AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ------------------ 356 (378)
Q Consensus 295 ~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~------------------ 356 (378)
......|+|+||||||||| ..++++.| +|++|+++||+||++||+||++|++...
T Consensus 287 ~~~~~~skL~lVDLAGSER-----~~~t~~~g--~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~ 359 (443)
T 2owm_A 287 DTTERSSRIRLVDLAGSER-----AKSTEATG--QRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPG 359 (443)
T ss_dssp -CCEEEEEEEEEECCCCCC---------------------CCSSHHHHHHHHHHHHHCC---------------------
T ss_pred CcceEEEEEEEEECCCCcc-----ccccCCcc--ccccchhhhcHHHHHHHHHHHHHhcccccccccccccccccccccc
Confidence 1224568899999999999 55566666 9999999999999999999999998653
Q ss_pred --hhhhhhhhHHH
Q psy5719 357 --KQVAELRDEIA 367 (378)
Q Consensus 357 --~~~~~~~d~~~ 367 (378)
+.+.++||+-+
T Consensus 360 ~~~~hVPYRdSkL 372 (443)
T 2owm_A 360 PANSVVPYRDSVL 372 (443)
T ss_dssp ----CCCGGGSHH
T ss_pred cCCCcccCcccHh
Confidence 24789999864
No 25
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=7.3e-58 Score=447.22 Aligned_cols=230 Identities=25% Similarity=0.364 Sum_probs=185.2
Q ss_pred CCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 80 ~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
..+.|+||+||+|+++|++||+. +.|+|+++++|||+||||||||||||||||+|.
T Consensus 50 ~~~~f~FD~Vf~~~~~Q~~Vy~~-v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~----------------------- 105 (347)
T 1f9v_A 50 QVHEFKFDKIFDQQDTNVDVFKE-VGQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP----------------------- 105 (347)
T ss_dssp CEEEEEESEEECTTCCHHHHHHH-HHHHHGGGGGTCCEEEEEECCTTSSHHHHHHST-----------------------
T ss_pred CceEEeeCEEECCCCCHHHHHHH-HHHHHHHhcCCceeEEEEECCCCCCCcEeccCC-----------------------
Confidence 35789999999999999999998 579999999999999999999999999999873
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccccC---------CC
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVSKV---------NL 229 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~~~---------~L 229 (378)
.+||+||++.+||+.+... ...+.|.|++||+|||||.++|||++... .+
T Consensus 106 --------------------~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~ 165 (347)
T 1f9v_A 106 --------------------GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKH 165 (347)
T ss_dssp --------------------TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC-------------CC
T ss_pred --------------------CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccccccCCce
Confidence 2499999999999998764 34689999999999999999999987532 46
Q ss_pred cccccC-CCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccch
Q psy5719 230 SVHEDK-NRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRS 301 (378)
Q Consensus 230 ~i~ed~-~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~S 301 (378)
.+++|+ .++++| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...+.... .+....|
T Consensus 166 ~i~~~~~~~~~~v------~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~-~~~~~~s 238 (347)
T 1f9v_A 166 EIRHDQETKTTTI------TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAK-TGAHSYG 238 (347)
T ss_dssp CEEEETTTTEEEE------TTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC---CCEEEE
T ss_pred eEEEecCCCceEe------cCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCC-CCceeee
Confidence 777764 566777 799999999999999999988 999999998 9999999986543322 2234568
Q ss_pred HHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhh-hhhhhhhhHHH
Q psy5719 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ-KQVAELRDEIA 367 (378)
Q Consensus 302 ll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~-~~~~~~~d~~~ 367 (378)
+|+||||||||| ..++++.| +|++|+++||+||++||+||.||++... +++.|+||+-+
T Consensus 239 kL~lVDLAGSEr-----~~~t~~~g--~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkL 298 (347)
T 1f9v_A 239 TLNLVDLAGSER-----INVSQVVG--DRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298 (347)
T ss_dssp EEEEEECCCCCC-----CCGGGCCH--HHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHH
T ss_pred EEEEEECCCCcc-----ccccccch--hhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHH
Confidence 899999999999 45555555 9999999999999999999999987653 47899999764
No 26
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=8.2e-57 Score=441.23 Aligned_cols=232 Identities=24% Similarity=0.311 Sum_probs=191.9
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhc-cCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCcccc
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA-GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~-G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~a 159 (378)
.+.|+||+||+++++|++||+.++.|+|.++++ |||+||||||||||||||||.|....
T Consensus 49 ~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~-------------------- 108 (360)
T 1ry6_A 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPY-------------------- 108 (360)
T ss_dssp EEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSST--------------------
T ss_pred cceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCC--------------------
Confidence 468999999999999999999999999999996 99999999999999999999996210
Q ss_pred ccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccccceeEEEEeeeeeeccccccccccccCCCcccccCCCCc
Q psy5719 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239 (378)
Q Consensus 160 ygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~ 239 (378)
+.+..+||+||++.+||..+......+.|.|++||+|||||.++|||++. ..+.+++|+.+++
T Consensus 109 ----------------~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~-~~~~~~e~~~~~~ 171 (360)
T 1ry6_A 109 ----------------GQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR-KMVAALENGKKEV 171 (360)
T ss_dssp ----------------TTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC------------CCB
T ss_pred ----------------CCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC-ccceeeEcCCCCE
Confidence 12345699999999999999876677899999999999999999999864 4577889999988
Q ss_pred EEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhccc
Q psy5719 240 FVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312 (378)
Q Consensus 240 ~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSE 312 (378)
+| .+++++.+.|.++++.++..| |+++.|.|| |||+||++...... .....|+|+||||||||
T Consensus 172 ~v------~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~----~~~~~skL~lVDLAGSE 241 (360)
T 1ry6_A 172 VV------KDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN----KNTSLGKIAFIDLAGSE 241 (360)
T ss_dssp CG------GGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETT----TTEEEEEEEEEECCCTT
T ss_pred EE------cCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEecc----CCcceeEEEEEECCCCc
Confidence 88 799999999999999999887 999999998 99999999854321 22456889999999999
Q ss_pred chhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 313 ra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
| ..++++.+ +++++|+++||+||++||+||.||+. .+++.++||+-+
T Consensus 242 r-----~~~t~~~~-~~~~~E~~~INkSL~aLg~vI~aL~~--~~~hvPyRdSkL 288 (360)
T 1ry6_A 242 R-----GADTVSQN-KQTQTDGANINRSLLALKECIRAMDS--DKNHIPFRDSEL 288 (360)
T ss_dssp G-----GGGGGCSS-HHHHHHHHHHHHHHHHHHHHHHHHTT--STTSCCGGGCHH
T ss_pred c-----cccccccc-ccchHHHHHHHHHHHHHHHHHHHHhc--CCCCCccccCHH
Confidence 9 45555444 57899999999999999999999975 357899999864
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=2e-56 Score=436.00 Aligned_cols=249 Identities=22% Similarity=0.310 Sum_probs=184.4
Q ss_pred HHHhhhcceeccccccCC----C-----------CCcCCCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCccee
Q psy5719 56 EVDRIKEAVRQKNLARRG----P-----------APQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIF 120 (378)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~----~-----------~~~~~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ 120 (378)
+...+++++|++|+.... + .......+.|+||+||+++++|++||+.++.|+|+++|+|||+|||
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tif 99 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTAL 99 (344)
T ss_dssp CCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEETTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEE
T ss_pred CCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEecCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEE
Confidence 345688999999864321 1 1112246889999999999999999999999999999999999999
Q ss_pred eeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcccc
Q psy5719 121 AYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE 200 (378)
Q Consensus 121 ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~~ 200 (378)
|||||||||||||.|..... ..+..+||+||++.+||+.+.....
T Consensus 100 AYGQTGSGKTyTM~g~~~~~-----------------------------------~~~~~~GIipra~~~LF~~i~~~~~ 144 (344)
T 3dc4_A 100 AYGQTGTGKSYSMGMTPPGE-----------------------------------ILPEHLGILPRALGDIFERVTARQE 144 (344)
T ss_dssp EESSTTSSHHHHHTCSCGGG-----------------------------------SCGGGCCHHHHHHHHHHHHHHHSSS
T ss_pred EecCCCCCCCeEEcCCCCCC-----------------------------------CCcccCCcHHHHHHHHHHHHHhhhh
Confidence 99999999999998752110 1234569999999999999976433
Q ss_pred --cceeEEEEeeeeeeccccccccccccCCCcccccCCCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhh
Q psy5719 201 --NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETR 275 (378)
Q Consensus 201 --~~~~~V~vS~~EIYnE~i~DLL~~~~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ 275 (378)
...|.|++||+|||||.++|||++......+.. ...+++++.+.|.++++.++..| |+++.|.
T Consensus 145 ~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~------------~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~ 212 (344)
T 3dc4_A 145 NNKDAIQVYASFIEIYNEKPFDLLGSTPHMPMVAA------------RCQRCTCLPLHSQADLHHILELGTRNRRVRPTN 212 (344)
T ss_dssp SCSSCCEEEEEEEEEESSCEEETTSSCTTSBCCSS------------TTTCSCCEECSSHHHHHHHHHHHHHTCC-----
T ss_pred ccccceEEEEEEEEEeCCeeEEccCCCCCCccccc------------cccCceecccCCHHHHHHHHHHHHhhccccccc
Confidence 457999999999999999999986543221111 12478888999999999999988 9999999
Q ss_pred cc----chhhHHHHhhhhhhhhhhccccchHHHHHHhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHH
Q psy5719 276 LL----LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL 351 (378)
Q Consensus 276 ln----rSH~if~i~~~~~~l~e~~~in~Sll~lVDLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL 351 (378)
|| |||+||++...+ ....|+++||||||||| ..++++.| ++++|+++||+||++||+||.+|
T Consensus 213 ~N~~SSRSH~Ifti~v~~-------~~~~skl~lVDLAGSEr-----~~~t~~~g--~r~~E~~~INkSL~aLg~vI~aL 278 (344)
T 3dc4_A 213 MNSNSSRSHAIVTIHVKS-------KTHHSRMNIVDLAGSEG-----VRRTGHEG--VARQEGVNINLGLLSINKVVMSM 278 (344)
T ss_dssp -----CCEEEEEEEEEEC-------SSCEEEEEEEECCCCCC-----C---------------CCSCCHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEEEEEe-------cCcEEEEEEEECCCCcc-----cccccccc--chhHHHHHHhHhHHHHHHHHHHH
Confidence 98 999999998532 23468899999999999 55566566 99999999999999999999999
Q ss_pred HHHhhhhhhhhhhHHH
Q psy5719 352 RDVHQKQVAELRDEIA 367 (378)
Q Consensus 352 ~~~~~~~~~~~~d~~~ 367 (378)
++. +.+.++||+-+
T Consensus 279 ~~~--~~hiPyRdSkL 292 (344)
T 3dc4_A 279 AAG--HTVIPYRDSVL 292 (344)
T ss_dssp HTT--CSSCCGGGSHH
T ss_pred hcc--CCcCCccccHH
Confidence 875 57899999864
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=4.6e-52 Score=442.92 Aligned_cols=230 Identities=22% Similarity=0.328 Sum_probs=181.8
Q ss_pred CCCeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 79 ~~~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
...+.|+||+||+++++|++||+. +.|+|+++++|||+||||||||||||||||.|.
T Consensus 427 ~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~---------------------- 483 (715)
T 4h1g_A 427 FSNLRFLFDKIFEREQSNDLVFEE-LSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP---------------------- 483 (715)
T ss_dssp EEEEEEECSEEECSSCCHHHHGGG-THHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT----------------------
T ss_pred CCCeEEEeceEeCCCCCHHHHHHH-HHHHHHHHhCCceEEEEccCCCCCchhhccCCC----------------------
Confidence 345789999999999999999987 579999999999999999999999999999873
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc-cccceeEEEEeeeeeeccccccccccc---cCCCccccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHED 234 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~-~~~~~~~V~vS~~EIYnE~i~DLL~~~---~~~L~i~ed 234 (378)
.+||+||++.+||+.+... .....|.|++||+|||||.|+|||++. ...+.++++
T Consensus 484 ---------------------~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~~~~~~~~~~~~~~ 542 (715)
T 4h1g_A 484 ---------------------TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHD 542 (715)
T ss_dssp ---------------------TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSCCCCTTCCCCEEEE
T ss_pred ---------------------CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCCCCCCCCcceeEEe
Confidence 3499999999999998764 356799999999999999999999864 345667765
Q ss_pred C-CCCcEEeeeceeeeecccccCCHHHHHHHHHHH---HHhhhhhcc----chhhHHHHhhhhhhhhhhccccchHHHHH
Q psy5719 235 K-NRVPFVKVKNLVARCTSMESSQAEEHKKAIEYE---KELGETRLL----LSHHEARMKSLQESMKEAENKKRSLEECV 306 (378)
Q Consensus 235 ~-~~~~~v~~~~~v~~~T~~~v~Ss~~~~~ll~~g---r~~~~t~ln----rSH~if~i~~~~~~l~e~~~in~Sll~lV 306 (378)
. .+.++| .+++++.|.|.++++.++..| |+++.|.|| |||+||+|+..+... .......|+|+||
T Consensus 543 ~~~g~~~v------~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~~~~~~-~~~~~~~~~l~lv 615 (715)
T 4h1g_A 543 DIAGKTTV------TNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNS-LTKESSYGTLNLI 615 (715)
T ss_dssp TTTTEEEE------TTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEEEEEET-TTCCEEEEEEEEE
T ss_pred cCCCCEEE------eCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEEEEEec-CCCCEeEEEEEEE
Confidence 4 444777 799999999999999999998 999999998 999999998654322 1223556889999
Q ss_pred HhhcccchhhhhhhhhhhcchhhhHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 307 DLAGSEra~~~~~e~~~~~~~~~rl~E~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
||||||| ..++++.| +|++|+++||+||++||+||.+|++.. .++.++||+-+
T Consensus 616 DLAGsEr-----~~~~~~~g--~~~~E~~~IN~sL~~L~~vi~al~~~~-~~~vpyR~SkL 668 (715)
T 4h1g_A 616 DLAGSER-----LNNSRAEG--DRLKETQAINKSLSCLGDVIHSLNLKD-GSHVPYRNSKL 668 (715)
T ss_dssp ECCCCCC----------------CHHHHHHHHHHHHHHHHHHHHHHHCS-CCCCCGGGCHH
T ss_pred eCCCccc-----ccccCChh--HHHHHHHHHHHHHHHHHHHHHHHhhcC-CCcCCCccCHH
Confidence 9999999 45555555 999999999999999999999998754 46789999853
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.7e-26 Score=212.56 Aligned_cols=160 Identities=13% Similarity=0.091 Sum_probs=126.1
Q ss_pred HHHHhHhhhhhhHHHHhhhcceeccccccCC--CCC--------cC---CCCeeEecccccCCCCChH--HHHHHHHHHH
Q psy5719 43 KEGAMKDRKRYQYEVDRIKEAVRQKNLARRG--PAP--------QI---GKGKFYLFDKVFKPNATQE--KVYDEAAKSI 107 (378)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--------~~---~~~~~F~FD~Vf~~~~~Q~--~vf~~~~~~l 107 (378)
+..|+..|++++|+++++||+||+..-++.. |.. .+ ...+.|.||+||+|.+.|+ +||++ +.++
T Consensus 5 ~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p~~~~v~y~~~~I~v~~~~k~f~FDRVf~p~s~Qe~~~vf~E-~~~~ 83 (298)
T 2o0a_A 5 VEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLPENLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDKFFTQE-YSVY 83 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSCTTEEEETTTTEEEETTTCCEEECSEEEETTTSCHHHHHHHT-THHH
T ss_pred HHHHHHHHHHHHhHHHHhhCceEEEEEeccccCCccceeecCccceeecCCCceEEeeeEECccccccHHHHHHH-HHHH
Confidence 4567899999999999999999995422221 110 01 1237899999999999999 99999 6999
Q ss_pred HHHhhc-cCCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhh
Q psy5719 108 VSDVLA-GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPR 186 (378)
Q Consensus 108 v~~~l~-G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr 186 (378)
|+.+++ |||+||||||||||||| ||
T Consensus 84 i~scLd~GyNvcIfSyGQTGsGKT------------------------------------------------------~r 109 (298)
T 2o0a_A 84 HDMCLNQKKNFNLISLSTTPHGSL------------------------------------------------------RE 109 (298)
T ss_dssp HHHHHHTTCCEEEEEECSSCCHHH------------------------------------------------------HH
T ss_pred HHHHHhCCCceEEEEECCCCCCcc------------------------------------------------------HH
Confidence 999999 99999999999999999 67
Q ss_pred hHHHHHhhhhc-ccccceeEEEEeeeeee-ccccccccccc--cCCCcccccCCCCcEEeeeceeeeecccccCC-HHHH
Q psy5719 187 IVNDIFNHIYQ-MDENLEFIIKVSYFEIY-MDKIRDLLDVS--KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQ-AEEH 261 (378)
Q Consensus 187 ~~~~lf~~l~~-~~~~~~~~V~vS~~EIY-nE~i~DLL~~~--~~~L~i~ed~~~~~~v~~~~~v~~~T~~~v~S-s~~~ 261 (378)
++..+|..... .. |.|.+.+||+||| ||.++|||... ...+.|+.+..+..++ .+++.+.+.+ .+++
T Consensus 110 al~q~f~~~~~~~~--~~Y~~tlq~veLy~Ne~~~DLL~~~~~~~k~eIk~~~~g~~iv------~~s~~i~V~~~~edv 181 (298)
T 2o0a_A 110 SLIKFLAEKDTIYQ--KQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEKHSIS------LDSKLVIIENGLEDL 181 (298)
T ss_dssp HHHHHHHSTTSHHH--HHEEEEEEEEEEECC-CEEETTSCCC------CEEEECSSCEE------EESCCEEESSGGGGS
T ss_pred HHHHHHHHhhhhcc--cceEEEEEEEEEecCCchHHhcCCCCCCCcceEEecCCCCEEe------cccEEEEccccHHHH
Confidence 88899987744 32 8999999999999 99999999733 2356777777777666 7888889999 7777
Q ss_pred HHHH
Q psy5719 262 KKAI 265 (378)
Q Consensus 262 ~~ll 265 (378)
..++
T Consensus 182 ~~~~ 185 (298)
T 2o0a_A 182 PLNF 185 (298)
T ss_dssp CTTT
T ss_pred HHHh
Confidence 6665
No 30
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=98.77 E-value=2.1e-09 Score=105.66 Aligned_cols=70 Identities=31% Similarity=0.543 Sum_probs=57.0
Q ss_pred CcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 128 GKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
-++|++...+++..++ ++|+.+|+|||+||||||||||||||||.|. +....-.|.+++..++.++...
T Consensus 82 ~~~F~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~---~~~~~~~~Giipr~~~~lF~~i 158 (376)
T 2rep_A 82 RHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGG---PGGDPQLEGLIPRALRHLFSVA 158 (376)
T ss_dssp -CEEECSEEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBC---SSCCGGGBCHHHHHHHHHHHHH
T ss_pred ceeeeecEEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecC---CCCCcccCCcHHHHHHHHHHHH
Confidence 4689988887766554 7899999999999999999999999999884 3223457899999999998754
Q ss_pred c
Q psy5719 200 E 200 (378)
Q Consensus 200 ~ 200 (378)
.
T Consensus 159 ~ 159 (376)
T 2rep_A 159 Q 159 (376)
T ss_dssp H
T ss_pred H
Confidence 3
No 31
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=98.73 E-value=2.1e-09 Score=104.65 Aligned_cols=75 Identities=25% Similarity=0.367 Sum_probs=56.9
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
+..|+|++...+++..++ |+|+.+|+|||+||||||||||||||||.|..... ...--|.+++..++.++
T Consensus 47 ~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~-~~~~~~Giipr~~~~lF 125 (344)
T 4a14_A 47 GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVAS-LLEDEQGIVPRAMAEAF 125 (344)
T ss_dssp TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC---------CCCCHHHHHHHHHH
T ss_pred cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhh-hhhcccCCchHHHHHHH
Confidence 357899998888766654 88999999999999999999999999998863321 12346789999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 126 ~~i~~ 130 (344)
T 4a14_A 126 KLIDE 130 (344)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 75443
No 32
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=98.73 E-value=3e-09 Score=104.17 Aligned_cols=77 Identities=47% Similarity=0.677 Sum_probs=61.7
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
||+|+....+++..++ |+|+.+|+|||+||||||||||||||||.|. ......+..++.+++.++..
T Consensus 50 ~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~----~~~~~~~Giipr~~~~lF~~ 125 (365)
T 2y65_A 50 GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGV----IGDSVKQGIIPRIVNDIFNH 125 (365)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBS----TTCTTTBCHHHHHHHHHHHH
T ss_pred CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecC----CCCcccCChHHHHHHHHHHH
Confidence 7999998888766654 8899999999999999999999999999884 44455679999999999875
Q ss_pred cccceeEEEE
Q psy5719 199 DENLEFIIKV 208 (378)
Q Consensus 199 ~~~~~~~V~v 208 (378)
.....-...+
T Consensus 126 i~~~~~~~~~ 135 (365)
T 2y65_A 126 IYAMEVNLEF 135 (365)
T ss_dssp HHHCCSCEEE
T ss_pred HHhccCCceE
Confidence 4443333333
No 33
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=98.66 E-value=6.1e-09 Score=100.54 Aligned_cols=70 Identities=44% Similarity=0.617 Sum_probs=57.1
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
+|+|+....+++..++ |+|+.+|+|||+||||||||||||||||.| .+ ...-.+..++.+++.++..
T Consensus 43 ~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G---~~-~~~~~~Giipr~~~~lF~~ 118 (325)
T 1bg2_A 43 SKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEG---KL-HDPEGMGIIPRIVQDIFNY 118 (325)
T ss_dssp TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB---ST-TCTTTBCHHHHHHHHHHHH
T ss_pred CEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecc---cC-CCcccCccHHHHHHHHHHH
Confidence 6999998888776654 899999999999999999999999999976 22 2233568999999998875
Q ss_pred ccc
Q psy5719 199 DEN 201 (378)
Q Consensus 199 ~~~ 201 (378)
...
T Consensus 119 i~~ 121 (325)
T 1bg2_A 119 IYS 121 (325)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 34
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=98.65 E-value=3.2e-09 Score=103.80 Aligned_cols=69 Identities=35% Similarity=0.603 Sum_probs=55.4
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
-++|+..+.+++ .+| |+|+.+|+|||+||||||||||||||||.| +....--|.+++..++.++..
T Consensus 71 ~~~F~FD~Vf~~-~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G----~~~~~~~~Giipra~~~lF~~ 145 (359)
T 3nwn_A 71 DWSFKLDGVLHD-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG----ATENYKHRGILPRALQQVFRM 145 (359)
T ss_dssp EEEEECSEEEES-CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB----CSSCGGGBCHHHHHHHHHHHH
T ss_pred ceEeecCccCCC-CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCC----ccCCccchhhHHHHHHHHHHH
Confidence 367888887753 333 899999999999999999999999999976 333445689999999999875
Q ss_pred ccc
Q psy5719 199 DEN 201 (378)
Q Consensus 199 ~~~ 201 (378)
...
T Consensus 146 ~~~ 148 (359)
T 3nwn_A 146 IEE 148 (359)
T ss_dssp HHT
T ss_pred hhc
Confidence 443
No 35
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=98.64 E-value=6e-09 Score=101.47 Aligned_cols=68 Identities=35% Similarity=0.570 Sum_probs=55.1
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
+..|+|++...+++..++ |+|+.+|+|||+|||||||||||||||| ....--|..++..++.++
T Consensus 53 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm-------~G~~~~~Giipr~~~~lF 125 (350)
T 2vvg_A 53 KVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM-------GGNKEEPGAIPNSFKHLF 125 (350)
T ss_dssp ---EEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH-------TBCSSSBCHHHHHHHHHH
T ss_pred CCceEeeCCEEECCCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe-------ecCCccCchHHHHHHHHH
Confidence 456899998888766543 8899999999999999999999999999 333457899999999998
Q ss_pred cccc
Q psy5719 197 QMDE 200 (378)
Q Consensus 197 ~~~~ 200 (378)
....
T Consensus 126 ~~i~ 129 (350)
T 2vvg_A 126 DAIN 129 (350)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 36
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=98.64 E-value=7.7e-09 Score=100.03 Aligned_cols=70 Identities=26% Similarity=0.436 Sum_probs=56.7
Q ss_pred CCCCcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 125 TSSGKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
.+..++|+....+++..++ ++|+.+|+|||+|||||||||||||||| ....--|.+++..++.++
T Consensus 44 ~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm-------~G~~~~~Giipr~~~~lF 116 (330)
T 2h58_A 44 KGKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTM-------EGTAENPGINQRALQLLF 116 (330)
T ss_dssp TTEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH-------TBCSSSBCHHHHHHHHHH
T ss_pred CCCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEE-------ecCCCCCcHHHHHHHHHH
Confidence 3456789988887655544 7899999999999999999999999999 334456899999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 117 ~~i~~ 121 (330)
T 2h58_A 117 SEVQE 121 (330)
T ss_dssp HHHHT
T ss_pred Hhhhc
Confidence 75443
No 37
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=98.64 E-value=6.9e-09 Score=101.68 Aligned_cols=78 Identities=26% Similarity=0.409 Sum_probs=60.0
Q ss_pred CCCCcceEecccCCCCCC--------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 125 TSSGKTHTMEGVMGDPNK--------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~--------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
.+..|+|+....+++..+ .++|+.+|+|||+|||||||||||||||| ....--|..++..++.++
T Consensus 43 ~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM-------~G~~~~~Giipr~~~~lF 115 (369)
T 3cob_A 43 DDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTI-------YGADSNPGLTPRAMSELF 115 (369)
T ss_dssp TSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHH-------TBCSSSBCHHHHHHHHHH
T ss_pred CCCceEEecCEEECCCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEee-------cCCCCCCchhHHHHHHHH
Confidence 345588998877765544 37899999999999999999999999999 344457899999999998
Q ss_pred cccccceeEEEEe
Q psy5719 197 QMDENLEFIIKVS 209 (378)
Q Consensus 197 ~~~~~~~~~V~vS 209 (378)
.......-...++
T Consensus 116 ~~i~~~~~~~~~~ 128 (369)
T 3cob_A 116 RIMKKDSNKFSFS 128 (369)
T ss_dssp HHHHHTTTTEEEE
T ss_pred HHHHhhccCceeE
Confidence 7644433333333
No 38
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=98.64 E-value=5.6e-09 Score=101.69 Aligned_cols=69 Identities=35% Similarity=0.505 Sum_probs=57.6
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
...|+|++...+++..++ |+|+.+|+|||+|||||||||||||||| ....--|.+++..++.++
T Consensus 41 ~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM-------~G~~~~~Giipr~~~~lF 113 (349)
T 1t5c_A 41 DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM-------MGSEDHLGVIPRAIHDIF 113 (349)
T ss_dssp TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH-------TBCSSSBCHHHHHHHHHH
T ss_pred CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE-------ecCCCCCchHHHHHHHHH
Confidence 346999999888766653 8899999999999999999999999999 333446789999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 114 ~~i~~ 118 (349)
T 1t5c_A 114 QKIKK 118 (349)
T ss_dssp HHGGG
T ss_pred HHHHh
Confidence 76544
No 39
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=98.64 E-value=8.3e-09 Score=101.36 Aligned_cols=72 Identities=38% Similarity=0.557 Sum_probs=58.8
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCC----CCCchhhhHHHHH
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN----KQGIIPRIVNDIF 192 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~----~~Giipr~~~~lf 192 (378)
...|+|++...+++..++ |+|+.+|+|||+||||||||||||||||.|....+. ...-.|.+++..+
T Consensus 64 ~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~ 143 (373)
T 2wbe_C 64 KLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143 (373)
T ss_dssp TTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHH
T ss_pred CCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHH
Confidence 346899998888776654 889999999999999999999999999999754321 2334678999999
Q ss_pred hhhhc
Q psy5719 193 NHIYQ 197 (378)
Q Consensus 193 ~~l~~ 197 (378)
+.++.
T Consensus 144 ~~lF~ 148 (373)
T 2wbe_C 144 SHLFD 148 (373)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 40
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=98.64 E-value=6.4e-09 Score=102.00 Aligned_cols=72 Identities=40% Similarity=0.578 Sum_probs=58.2
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
...|+|++...+++..++ |+|+.+|+|||+||||||||||||||||.| .....-.+.+++..++.++
T Consensus 65 ~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G----~~~~~~~~Giipr~~~~lF 140 (372)
T 3b6u_A 65 EMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG----IRGDPEKRGVIPNSFDHIF 140 (372)
T ss_dssp CCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTB----CTTSGGGBCHHHHHHHHHH
T ss_pred CCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEec----CCCCcccCCcHHHHHHHHH
Confidence 346899998888766654 889999999999999999999999999975 2223345789999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 141 ~~i~~ 145 (372)
T 3b6u_A 141 THISR 145 (372)
T ss_dssp HHHHT
T ss_pred HHhhh
Confidence 75544
No 41
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=98.63 E-value=6.5e-09 Score=102.37 Aligned_cols=67 Identities=28% Similarity=0.493 Sum_probs=55.1
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
..++|++...+++..++ |+|+.+|+|||+|||||||||||||||| ....--|.+++..+..++.
T Consensus 63 ~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM-------~G~~~~~Giipra~~~lF~ 135 (388)
T 3bfn_A 63 ETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM-------LGSPEQPGVIPRALMDLLQ 135 (388)
T ss_dssp CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH-------TBCSSSBCHHHHHHHHHHH
T ss_pred CeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe-------ecCccccchhHHHHHHHHH
Confidence 45789988887765543 8999999999999999999999999999 3334578999999999887
Q ss_pred ccc
Q psy5719 198 MDE 200 (378)
Q Consensus 198 ~~~ 200 (378)
...
T Consensus 136 ~i~ 138 (388)
T 3bfn_A 136 LTR 138 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
No 42
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=98.58 E-value=9.5e-09 Score=100.32 Aligned_cols=73 Identities=29% Similarity=0.443 Sum_probs=58.1
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
.++|++...+++..++ |+|+.+|+|||+|||||||||||||||| ....--|..++..++.++..
T Consensus 71 ~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm-------~G~~~~~Giipr~~~~lf~~ 143 (355)
T 3lre_A 71 DLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM-------LGSADEPGVMYLTMLHLYKC 143 (355)
T ss_dssp CEEEECSEEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH-------TBCSSSBCHHHHHHHHHHHH
T ss_pred CceEEeceEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee-------ccCCCCCCeeehhhhHHHHh
Confidence 4678888877766543 8899999999999999999999999999 44455789999999999876
Q ss_pred cccceeEEE
Q psy5719 199 DENLEFIIK 207 (378)
Q Consensus 199 ~~~~~~~V~ 207 (378)
.....-...
T Consensus 144 i~~~~~~~~ 152 (355)
T 3lre_A 144 MDEIKEEKI 152 (355)
T ss_dssp HHHTTTTEE
T ss_pred hhhhccCce
Confidence 544443333
No 43
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=98.56 E-value=1e-08 Score=99.63 Aligned_cols=71 Identities=20% Similarity=0.279 Sum_probs=56.7
Q ss_pred CCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 127 SGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 127 SGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
.+|+|+....+++..++ ++|+.+|+|||+||||||||||||||||.|..... ...--|.+++..++.++.
T Consensus 59 ~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~-~~~~~~GIipra~~~LF~ 137 (344)
T 3dc4_A 59 DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGE-ILPEHLGILPRALGDIFE 137 (344)
T ss_dssp TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGG-SCGGGCCHHHHHHHHHHH
T ss_pred cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCC-CCcccCCcHHHHHHHHHH
Confidence 36899998888776654 89999999999999999999999999997753221 123456889999988876
Q ss_pred c
Q psy5719 198 M 198 (378)
Q Consensus 198 ~ 198 (378)
.
T Consensus 138 ~ 138 (344)
T 3dc4_A 138 R 138 (344)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=98.56 E-value=1.9e-08 Score=98.22 Aligned_cols=73 Identities=32% Similarity=0.468 Sum_probs=59.4
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
+..++|+....+++..++ |+|+.+|+|||+||||||||||||||||.|. +....--|.+++.+++.++
T Consensus 44 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~---~~~~~~~~Giipr~~~~lF 120 (355)
T 1goj_A 44 EAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGT---SIDDPDGRGVIPRIVEQIF 120 (355)
T ss_dssp TCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBS---CTTSTTTBCHHHHHHHHHH
T ss_pred CCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecC---CCCCcccCCchHHHHHHHH
Confidence 346899998888766654 8899999999999999999999999999885 2233456899999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 121 ~~i~~ 125 (355)
T 1goj_A 121 TSILS 125 (355)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 75433
No 45
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=98.56 E-value=1e-08 Score=101.94 Aligned_cols=66 Identities=30% Similarity=0.419 Sum_probs=54.2
Q ss_pred CcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 128 GKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
.++|++...+++..++ |+|+.+|+|||+|||||||||||||||| ....--|.+++..++.++...
T Consensus 105 ~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM-------~G~~~~~Giipr~~~~lF~~i 177 (412)
T 3u06_A 105 QQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTM-------DGVPESVGVIPRTVDLLFDSI 177 (412)
T ss_dssp CCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHH-------TEETTEECHHHHHHHHHHHHH
T ss_pred ceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEe-------cCCCCCCccHHHHHHHHHHhh
Confidence 4789988887765544 8999999999999999999999999999 333345789999999998754
Q ss_pred c
Q psy5719 200 E 200 (378)
Q Consensus 200 ~ 200 (378)
.
T Consensus 178 ~ 178 (412)
T 3u06_A 178 R 178 (412)
T ss_dssp H
T ss_pred h
Confidence 3
No 46
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=98.55 E-value=1.2e-08 Score=101.20 Aligned_cols=72 Identities=25% Similarity=0.414 Sum_probs=56.5
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
.++|++...+++..++ |+|+.+|+|||+||||||||||||||||.|..... ...-.|.++..+++.++..
T Consensus 120 ~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~-~~~~~~Giipra~~~lF~~ 198 (410)
T 1v8k_A 120 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK-SQNASKGIYAMASRDVFLL 198 (410)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC-----CBGGGSHHHHHHHHHHHH
T ss_pred ceEEeeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCC-CccccCcchhhhHHHHHHH
Confidence 4789998888766543 88999999999999999999999999999974332 2334678899999888764
Q ss_pred cc
Q psy5719 199 DE 200 (378)
Q Consensus 199 ~~ 200 (378)
..
T Consensus 199 ~~ 200 (410)
T 1v8k_A 199 KN 200 (410)
T ss_dssp HT
T ss_pred Hh
Confidence 33
No 47
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=98.54 E-value=1.2e-08 Score=99.69 Aligned_cols=67 Identities=27% Similarity=0.457 Sum_probs=52.7
Q ss_pred CCCcceEecccCCCC--------CC---------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhH
Q psy5719 126 SSGKTHTMEGVMGDP--------NK---------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIV 188 (378)
Q Consensus 126 gSGKTyTm~G~~~~~--------~~---------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~ 188 (378)
+..|+|+....++.. .. .++|+.+|+|||+|||||||||||||||| ...+--|.++
T Consensus 48 ~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm-------~G~~~~~Gii 120 (354)
T 3gbj_A 48 GQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM-------MGTADQPGLI 120 (354)
T ss_dssp -CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH-------TBCSSSBCHH
T ss_pred CCceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE-------ecCCCCCchh
Confidence 346888887666321 11 37999999999999999999999999999 3445578999
Q ss_pred HHHHhhhhccc
Q psy5719 189 NDIFNHIYQMD 199 (378)
Q Consensus 189 ~~lf~~l~~~~ 199 (378)
+.+++.++...
T Consensus 121 pr~~~~lF~~i 131 (354)
T 3gbj_A 121 PRLCSGLFERT 131 (354)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99999998753
No 48
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=98.53 E-value=1.2e-08 Score=100.37 Aligned_cols=71 Identities=25% Similarity=0.413 Sum_probs=51.8
Q ss_pred CcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
.++|++...+++..++ |+|+.+|+|||+||||||||||||||||.|....+ ...-.|.++..+++.++..
T Consensus 100 ~~~F~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~-~~~~~~Giipr~~~~lF~~ 178 (387)
T 2heh_A 100 NQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGK-AQNASKGIYAMASRDVFLL 178 (387)
T ss_dssp EEEEECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC------------CCHHHHHHHHHHHH
T ss_pred ccEEeeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCC-CcccCCceehhhHHHHHHH
Confidence 4789998888766544 89999999999999999999999999999864332 2234578888888888764
Q ss_pred c
Q psy5719 199 D 199 (378)
Q Consensus 199 ~ 199 (378)
.
T Consensus 179 ~ 179 (387)
T 2heh_A 179 K 179 (387)
T ss_dssp H
T ss_pred h
Confidence 3
No 49
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=98.49 E-value=1.6e-08 Score=98.73 Aligned_cols=70 Identities=33% Similarity=0.602 Sum_probs=55.0
Q ss_pred CcceEecccCCCCCC--------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 128 GKTHTMEGVMGDPNK--------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 128 GKTyTm~G~~~~~~~--------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
-++|++.+.+.+..+ .++|+.+|+|||+||||||||||||||||.|. ....--|.+++..++.++...
T Consensus 70 ~~~F~fD~Vf~~~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~----~~~~~~~Giipra~~~lF~~i 145 (358)
T 2nr8_A 70 DWSFKLDGVLHDASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGA----TENYKHRGILPRALQQVFRMI 145 (358)
T ss_dssp EEEEECSEEEESCCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBC----SSCGGGBCHHHHHHHHHHHHH
T ss_pred ceEEECCeecCCcCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEeccc----ccccccCCcHHHHHHHHHHHH
Confidence 467887777643221 28999999999999999999999999999884 333345899999999998754
Q ss_pred cc
Q psy5719 200 EN 201 (378)
Q Consensus 200 ~~ 201 (378)
..
T Consensus 146 ~~ 147 (358)
T 2nr8_A 146 EE 147 (358)
T ss_dssp HT
T ss_pred hh
Confidence 44
No 50
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=98.41 E-value=4.4e-08 Score=98.23 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=53.3
Q ss_pred CCcceEecccCCCC-------CC---------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHH
Q psy5719 127 SGKTHTMEGVMGDP-------NK---------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVND 190 (378)
Q Consensus 127 SGKTyTm~G~~~~~-------~~---------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~ 190 (378)
..|+|++...++.. .+ .++|+.+|+|||+|||||||||||||||| ....--|.+++.
T Consensus 94 ~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM-------~G~~~~~GIipr 166 (443)
T 2owm_A 94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM-------MGTPDQPGLIPR 166 (443)
T ss_dssp CCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH-------TCCTTSCCHHHH
T ss_pred CCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe-------ecCCCCCchHHH
Confidence 36889987776432 11 27899999999999999999999999999 333346899999
Q ss_pred HHhhhhcccc
Q psy5719 191 IFNHIYQMDE 200 (378)
Q Consensus 191 lf~~l~~~~~ 200 (378)
.++.++....
T Consensus 167 ~~~~lF~~i~ 176 (443)
T 2owm_A 167 TCEDLFQRIA 176 (443)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987533
No 51
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=98.23 E-value=1.2e-07 Score=92.68 Aligned_cols=72 Identities=43% Similarity=0.651 Sum_probs=57.7
Q ss_pred CCCcceEecccCCCCCCC---------CchhhhhhcccCccccccCCCCCCcccccccCCCCCC----CCchhhhHHHHH
Q psy5719 126 SSGKTHTMEGVMGDPNKQ---------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNK----QGIIPRIVNDIF 192 (378)
Q Consensus 126 gSGKTyTm~G~~~~~~~~---------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~----~Giipr~~~~lf 192 (378)
...|+|+....+++..++ |+|+.+|+|||+||||||||||||||||.|....... ..-.+.+++..+
T Consensus 52 ~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~ 131 (359)
T 1x88_A 52 SSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTL 131 (359)
T ss_dssp EEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHH
T ss_pred cCceEEeceEEEeccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHH
Confidence 346899998888766654 8999999999999999999999999999997543211 122468999999
Q ss_pred hhhhc
Q psy5719 193 NHIYQ 197 (378)
Q Consensus 193 ~~l~~ 197 (378)
+.++.
T Consensus 132 ~~lF~ 136 (359)
T 1x88_A 132 HQIFE 136 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98875
No 52
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=98.22 E-value=2.1e-07 Score=91.22 Aligned_cols=69 Identities=26% Similarity=0.454 Sum_probs=54.3
Q ss_pred CCcceEecccCCCC--------CC---------CCchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHH
Q psy5719 127 SGKTHTMEGVMGDP--------NK---------QGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVN 189 (378)
Q Consensus 127 SGKTyTm~G~~~~~--------~~---------~gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~ 189 (378)
..|+|+....++.. .+ .|+|+.+|+|||+||||||||||||||||.| ....--|.+++
T Consensus 46 ~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G-----~~~~~~~Giip 120 (366)
T 2zfi_A 46 TPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG-----KQEKDQQGIIP 120 (366)
T ss_dssp CCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB-----CSGGGCBCHHH
T ss_pred CceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeC-----CCccCCCccHH
Confidence 46788887666433 11 3789999999999999999999999999976 33234678999
Q ss_pred HHHhhhhcccc
Q psy5719 190 DIFNHIYQMDE 200 (378)
Q Consensus 190 ~lf~~l~~~~~ 200 (378)
.+++.++....
T Consensus 121 r~~~~lF~~i~ 131 (366)
T 2zfi_A 121 QLCEDLFSRIN 131 (366)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999987543
No 53
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=98.14 E-value=6.2e-07 Score=87.31 Aligned_cols=64 Identities=30% Similarity=0.473 Sum_probs=55.6
Q ss_pred CcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 128 GKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
.++|++...+++..++ ++|+.+|+|||+|||||||||||||||| .|--+.+++..++.++...
T Consensus 52 ~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm---------~g~~~Giipr~~~~lF~~~ 122 (349)
T 3t0q_A 52 SYNFQFDMIFEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM---------LNAGDGMIPMTLSHIFKWT 122 (349)
T ss_dssp EEEEEESEEECTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH---------HSTTTSHHHHHHHHHHHHH
T ss_pred ceeeecCEEECCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe---------CCCCCchhhHHHHHHHHHH
Confidence 5789998888766654 7899999999999999999999999999 7878899999999998754
Q ss_pred c
Q psy5719 200 E 200 (378)
Q Consensus 200 ~ 200 (378)
.
T Consensus 123 ~ 123 (349)
T 3t0q_A 123 A 123 (349)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=98.01 E-value=1.1e-06 Score=85.36 Aligned_cols=68 Identities=31% Similarity=0.489 Sum_probs=58.1
Q ss_pred cCCCCcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhh
Q psy5719 124 QTSSGKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI 195 (378)
Q Consensus 124 ~tgSGKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l 195 (378)
.++..|+|++...+++..++ ++|+.+|+|||+|||||||||||||||| .|--+.+++..++.+
T Consensus 47 ~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM---------~G~~~Giipr~~~~l 117 (347)
T 1f9v_A 47 NTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM---------LNPGDGIIPSTISHI 117 (347)
T ss_dssp GTTCEEEEEESEEECTTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH---------HSTTTSHHHHHHHHH
T ss_pred CCcCceEEeeCEEECCCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec---------cCCCCCchHHHHHHH
Confidence 34456899999888766654 7899999999999999999999999999 788889999999998
Q ss_pred hcccc
Q psy5719 196 YQMDE 200 (378)
Q Consensus 196 ~~~~~ 200 (378)
+....
T Consensus 118 F~~i~ 122 (347)
T 1f9v_A 118 FNWIN 122 (347)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87533
No 55
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=97.95 E-value=1.4e-06 Score=86.40 Aligned_cols=68 Identities=31% Similarity=0.495 Sum_probs=57.4
Q ss_pred CCCCcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhh
Q psy5719 125 TSSGKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196 (378)
Q Consensus 125 tgSGKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~ 196 (378)
++.-|+|++...+++..++ ++|+.+|+|||+|||||||||||||||| .|--+.+++..++.++
T Consensus 104 ~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM---------~g~~~Giipr~~~~lF 174 (403)
T 4etp_A 104 TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM---------LNPGDGIIPSTISHIF 174 (403)
T ss_dssp SCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHH---------HCTTTSHHHHHHHHHH
T ss_pred CcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEe---------CCCCCccchhHHHHHH
Confidence 3345889998888766654 7899999999999999999999999999 7778899999999998
Q ss_pred ccccc
Q psy5719 197 QMDEN 201 (378)
Q Consensus 197 ~~~~~ 201 (378)
.....
T Consensus 175 ~~i~~ 179 (403)
T 4etp_A 175 NWINK 179 (403)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 75443
No 56
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.0004 Score=65.41 Aligned_cols=82 Identities=13% Similarity=0.037 Sum_probs=60.6
Q ss_pred HHHHhHhhhhhhHHHHhhhcceeccccccCCCC-------------CcCCCCeeEecccccCCCC--ChHHHHHHHHHHH
Q psy5719 43 KEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPA-------------PQIGKGKFYLFDKVFKPNA--TQEKVYDEAAKSI 107 (378)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~F~FD~Vf~~~~--~Q~~vf~~~~~~l 107 (378)
..+|..-|+++.|.++++||.||+---+..... ...+..+.|.|++|++.+. .+..+|++ .+..
T Consensus 40 meqE~lrRRkLENSIdElKG~IRcFAYi~~~~~p~~~~idY~~~~It~~~~~~~y~FnRiIp~~~~~e~~~l~qE-~q~y 118 (333)
T 4etp_B 40 VCKELLRSRRLENSIIEQKGTMRVYAYVMEQNLPENLLFDYENGVITQGLSEHVYKFNRVIPHLKVSEDCFFTQE-YSVY 118 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSCCSSCEEETTTTEEEC--CCCEEECSEEEETTTCCHHHHHHHT-THHH
T ss_pred HHHHHHHHHHHhhhHHHhcCcEEEEEEECcccCCccEEEecccceEeecCCcceEEEeeeechhhcchHHHHHHH-HHHH
Confidence 345577899999999999999999542222111 1246778999999998766 55666666 4888
Q ss_pred HHHhh-ccCCcceeeeccC
Q psy5719 108 VSDVL-AGYNGTIFAYGQT 125 (378)
Q Consensus 108 v~~~l-~G~n~~i~ayG~t 125 (378)
++-++ .+.|+.|++-|..
T Consensus 119 ~DmcL~~~~NfslIsis~~ 137 (333)
T 4etp_B 119 HDMALNQKKNFNLISLSTT 137 (333)
T ss_dssp HHHHHHTTCCEEEEEEESS
T ss_pred HHHHHccCCCeeEEEecCC
Confidence 99999 7999999988753
No 57
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=97.65 E-value=6.2e-06 Score=80.48 Aligned_cols=69 Identities=32% Similarity=0.441 Sum_probs=55.5
Q ss_pred CcceEecccCCCCCCC---------Cchhhhhh-cccCccccccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhc
Q psy5719 128 GKTHTMEGVMGDPNKQ---------GIIPHVLA-GYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197 (378)
Q Consensus 128 GKTyTm~G~~~~~~~~---------gil~r~l~-g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~ 197 (378)
.++|+....+++..++ |+|..+++ |+|++|||||||||||||||.|. .+...+-.|++++..++.++.
T Consensus 49 ~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~--~~~~~~~~~Giipr~~~~lF~ 126 (360)
T 1ry6_A 49 RHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGS--QPYGQSDTPGIFQYAAGDIFT 126 (360)
T ss_dssp EEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBS--SSTTTSSCBCHHHHHHHHHHH
T ss_pred cceEEeeeEecCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecC--CCCCCccCCCcHHHHHHHHHH
Confidence 4789988887766554 77888886 99999999999999999999985 222234678999999998876
Q ss_pred c
Q psy5719 198 M 198 (378)
Q Consensus 198 ~ 198 (378)
.
T Consensus 127 ~ 127 (360)
T 1ry6_A 127 F 127 (360)
T ss_dssp H
T ss_pred H
Confidence 4
No 58
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=97.57 E-value=7.9e-06 Score=86.80 Aligned_cols=76 Identities=25% Similarity=0.330 Sum_probs=60.4
Q ss_pred Ccceeeec--cCCCCcceEecccCCCCCCC--------CchhhhhhcccCccccccCCCCCCcccccccCCCCCCCCchh
Q psy5719 116 NGTIFAYG--QTSSGKTHTMEGVMGDPNKQ--------GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIP 185 (378)
Q Consensus 116 n~~i~ayG--~tgSGKTyTm~G~~~~~~~~--------gil~r~l~g~~~~i~aygqtgsgKt~tm~g~~~~~~~~Giip 185 (378)
+-.+.+.. ..+..|+|+....+++..++ ++|+.+|+|||+|||||||||||||||| .|--+
T Consensus 415 ~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm---------~g~~~ 485 (715)
T 4h1g_A 415 QELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM---------SHPTN 485 (715)
T ss_dssp CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHH---------HCTTT
T ss_pred CeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhcc---------CCCCC
Confidence 33344444 44556788888777655544 7899999999999999999999999999 78889
Q ss_pred hhHHHHHhhhhcccc
Q psy5719 186 RIVNDIFNHIYQMDE 200 (378)
Q Consensus 186 r~~~~lf~~l~~~~~ 200 (378)
.+++..++.++....
T Consensus 486 Giipr~~~~lf~~~~ 500 (715)
T 4h1g_A 486 GMIPLSLKKIFNDIE 500 (715)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 999999999987533
No 59
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=97.52 E-value=1.5e-05 Score=63.27 Aligned_cols=33 Identities=21% Similarity=0.198 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 334 KEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 334 ~~~IN~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
+++||+||++||+||.+|++.. +.+.++||+-+
T Consensus 1 a~~IN~SL~~Lg~vI~aL~~~~-~~hvPyRdSkL 33 (100)
T 2kin_B 1 AKNINKSLSALGNVISALAEGT-KTHVPYRDSKM 33 (100)
T ss_dssp CCBSSHHHHHHHHHHHHHHHTC-CSSCCGGGCHH
T ss_pred CCcchHHHHHHHHHHHHHHhcC-CCCCCCccchH
Confidence 4679999999999999999853 56889999853
No 60
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=95.89 E-value=0.0017 Score=52.94 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhHHH
Q psy5719 338 NEVKVALEQQMDQLRDVHQKQVAELRDEIA 367 (378)
Q Consensus 338 N~SLs~Lg~vi~aL~~~~~~~~~~~~d~~~ 367 (378)
|+||++||+||.+|++.. +.+.++||+-+
T Consensus 1 N~SL~~Lg~vi~aL~~~~-~~hvPyRdSkL 29 (117)
T 3kin_B 1 NKSLSALGNVISALAEGT-KTHVPYRDSKM 29 (117)
T ss_dssp CCHHHHHHHHHHHHHHSC-CSSCCGGGSHH
T ss_pred CCCHHHHHHHHHHHHhCC-CCCCCCcchHH
Confidence 899999999999999854 46888998754
No 61
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=94.55 E-value=0.0082 Score=56.01 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=31.3
Q ss_pred cceEecccCCCCCCC----------Cchhhhhh-cccCccccccCCCC
Q psy5719 129 KTHTMEGVMGDPNKQ----------GIIPHVLA-GYNGTIFAYGQTSS 165 (378)
Q Consensus 129 KTyTm~G~~~~~~~~----------gil~r~l~-g~~~~i~aygqtgs 165 (378)
|+|.....+++...+ ++++++|+ |||+|||||||||+
T Consensus 57 k~f~FDRVf~p~s~Qe~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGs 104 (298)
T 2o0a_A 57 HVYKFNRVIPHLKVSEDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPH 104 (298)
T ss_dssp CEEECSEEEETTTSCHHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCC
T ss_pred ceEEeeeEECccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCCCC
Confidence 889887777666555 46999999 99999999999985
No 62
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.24 E-value=0.01 Score=50.91 Aligned_cols=51 Identities=18% Similarity=0.140 Sum_probs=36.0
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++||.....+..|+++++.+ ...+.++-......++-||++|+|||+.+.
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 467888666556788888764 566665543444567889999999998763
No 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.14 E-value=0.063 Score=46.67 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=33.2
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccC-CcceeeeccCCCCcceEec
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGY-NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm~ 134 (378)
.++||.....+..+..+++.+ ...+...-.+. +..|+-||++|+|||+.+.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHHH
T ss_pred cCCHhhccCCChhHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHHH
Confidence 457787665555677777753 44444433322 2678899999999998763
No 64
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.68 E-value=0.06 Score=50.85 Aligned_cols=50 Identities=14% Similarity=0.256 Sum_probs=32.5
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++||.....+..+..++.. +...+...-.+....|+-||++|+||||.+.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred CCHhhCcCCChHHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 5777754433355556663 3455554433335678889999999998874
No 65
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.64 E-value=0.32 Score=44.11 Aligned_cols=51 Identities=16% Similarity=0.169 Sum_probs=32.9
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHH-HHhhc----cCCcceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIV-SDVLA----GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~----G~n~~i~ayG~tgSGKTyTm 133 (378)
..+.|+.+.+.+...+.+.+.+ ..+- ...+. .....++-||++|+|||+..
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIV-DFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHH-HHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHH-HHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 3567899999887777666532 3211 11111 22345889999999999776
No 66
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.03 E-value=0.27 Score=45.80 Aligned_cols=48 Identities=17% Similarity=0.150 Sum_probs=29.9
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCC----cceeeeccCCCCcceEe
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYN----GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n----~~i~ayG~tgSGKTyTm 133 (378)
||.+|+..---..+.+.++..++...+...+ ..++-||++|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444443333345666666677776654222 35788999999999765
No 67
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.53 E-value=0.26 Score=46.90 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=21.5
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
-..+-.|...+++-||++|+|||.++.
T Consensus 37 ~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 37 YDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 333446888899999999999998763
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.49 E-value=0.29 Score=44.45 Aligned_cols=45 Identities=16% Similarity=0.225 Sum_probs=21.9
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+||.+.+.+..-..+.+. +..+. ..+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~~~~~~~~~~-----~~~~~-~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEANSFLEVLEQ-----VSHLA-PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCCHHHHHHHHH-----HHHHT-TSCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCCHHHHHHHHH-----HHHHh-CCCCCEEEECCCCCcHHHHH
Confidence 37888887644333333322 22222 23467888999999999765
No 69
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.99 E-value=0.34 Score=40.54 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..++..+..+....++-||.+|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 344444455666778999999999997763
No 70
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=85.89 E-value=0.18 Score=45.45 Aligned_cols=52 Identities=15% Similarity=0.198 Sum_probs=29.5
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHH-HHhhccC----CcceeeeccCCCCcceEe
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIV-SDVLAGY----NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~G~----n~~i~ayG~tgSGKTyTm 133 (378)
...++||.|.+.+....++-+- +..+- ..++.+. ...++-||++|+|||+.+
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3467889888765433333322 22110 1123222 123889999999999776
No 71
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.01 E-value=0.67 Score=45.97 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=53.2
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-Hhhc--c--CCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLA--G--YNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~--G--~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
-+||.|-+.+..-+++-+.++.|+.. ..|. | ..-.|+-||++|+|||.+. +++.+....-|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllA--------------kAiA~e~~~~f 243 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLA--------------RACAAQTNATF 243 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHH--------------HHHHHHHTCEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHH--------------HHHHHHhCCCE
Confidence 35777777666666677777777652 3443 2 2345899999999999543 33332222111
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
+.+.+..--....|...+.+..+|......
T Consensus 244 ----------~~v~~s~l~~~~vGese~~ir~lF~~A~~~ 273 (434)
T 4b4t_M 244 ----------LKLAAPQLVQMYIGEGAKLVRDAFALAKEK 273 (434)
T ss_dssp ----------EEEEGGGGCSSCSSHHHHHHHHHHHHHHHH
T ss_pred ----------EEEehhhhhhcccchHHHHHHHHHHHHHhc
Confidence 111111111234477788899999877654
No 72
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=84.87 E-value=0.42 Score=44.91 Aligned_cols=45 Identities=11% Similarity=0.306 Sum_probs=29.4
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
...|+|+.+++.+ .+... +....+.+....|+-||.+|+|||+..
T Consensus 18 ~~~~~f~~i~G~~----~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQE----DMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSCH----HHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccChH----HHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 3568899987643 33322 223344444456999999999999765
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.59 E-value=0.76 Score=45.48 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=52.4
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-HhhccC----CcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY----NGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~----n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
-+||.|-+-+.--+++.+.+..|+.. ..+..+ .-.|+-||++|+|||... +++......-|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~la--------------kAiA~~~~~~~ 234 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLV--------------KAVANSTKAAF 234 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHH--------------HHHHHHHTCEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHH--------------HHHHHHhCCCe
Confidence 45677776655556666666556542 344322 234899999999999554 33332221111
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
+.+.+..--....|-.++.+..+|.......
T Consensus 235 ----------~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 235 ----------IRVNGSEFVHKYLGEGPRMVRDVFRLARENA 265 (428)
T ss_dssp ----------EEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC
T ss_pred ----------EEEecchhhccccchhHHHHHHHHHHHHHcC
Confidence 1112221122345888899999999876543
No 74
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.41 E-value=0.61 Score=45.79 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=54.0
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-Hhhcc--C--CcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLAG--Y--NGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G--~--n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
-+||.|-+-+..-+++-+.+..|+.. ..|.+ . .-.|+-||++|+|||.. .+++.+....-|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTll--------------AkAiA~e~~~~f 210 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLL--------------ARAVAHHTDCKF 210 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHH--------------HHHHHHHHTCEE
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHH--------------HHHHHHhhCCCc
Confidence 45666666555556666666666652 34443 2 34589999999999944 344433322211
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
+.+.|..--....|-..+.+..+|.......
T Consensus 211 ----------~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a 241 (405)
T 4b4t_J 211 ----------IRVSGAELVQKYIGEGSRMVRELFVMAREHA 241 (405)
T ss_dssp ----------EEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC
T ss_pred ----------eEEEhHHhhccccchHHHHHHHHHHHHHHhC
Confidence 1112221122344778889999999876643
No 75
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=84.21 E-value=0.38 Score=40.21 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=21.9
Q ss_pred HHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 105 KSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 105 ~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..++..+..+....++-||.+|+|||+.+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 344444455666778999999999997763
No 76
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=83.72 E-value=0.37 Score=44.93 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=32.2
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-Hhhc----cCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLA----GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~----G~n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+.+.+.+..|+.. ..+. .....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 356788887665555566555444321 1221 23456899999999999765
No 77
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.39 E-value=0.65 Score=43.43 Aligned_cols=49 Identities=22% Similarity=0.457 Sum_probs=29.7
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.|+||.... ...+...+.. +..++..-- +....++-||++|+|||+.+.
T Consensus 7 ~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 7 KYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp TCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHHH
T ss_pred CCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHHH
Confidence 578888653 2344445544 333333211 133568899999999998774
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=81.72 E-value=0.57 Score=42.74 Aligned_cols=51 Identities=12% Similarity=0.187 Sum_probs=31.4
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-Hhh----ccCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVL----AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l----~G~n~~i~ayG~tgSGKTyTm 133 (378)
.++|+.+.+.+..-+.+.+.+..++.. ..+ -.....++-||.+|+|||+..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 577888887665555554443333211 111 123456889999999999766
No 79
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.71 E-value=0.96 Score=39.48 Aligned_cols=45 Identities=22% Similarity=0.364 Sum_probs=27.1
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++|+.+... ..++.+++.+ ..+ +..+....++-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~l-~~~---~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGAL-KSA---ASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHHH-HHH---HHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHHH-HHH---HhCCCCCeEEEECCCCCCHHHHH
Confidence 567776552 2344555432 222 22335667899999999999776
No 80
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.76 E-value=0.51 Score=43.21 Aligned_cols=51 Identities=16% Similarity=0.207 Sum_probs=28.8
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHH-HHhhccCC----cceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIV-SDVLAGYN----GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~G~n----~~i~ayG~tgSGKTyTm 133 (378)
..++||.|.+.+....++-+- +..+- ..++.+.+ ..++-||++|+|||+.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l-~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHH-HHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHH-HHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 457888887765443333322 22110 11232221 22789999999999776
No 81
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.32 E-value=1.1 Score=44.31 Aligned_cols=91 Identities=15% Similarity=0.171 Sum_probs=51.4
Q ss_pred EecccccCCCCChHHHHHHHHHHHH-HHhhccC----CcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIV-SDVLAGY----NGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~G~----n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
.+||.|-+-+..-+++-+.+..|+. ...|..+ .-.|+-||++|+|||.+. +++..-...-|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllA--------------kAiA~e~~~~~ 243 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLA--------------KAVAATIGANF 243 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHH--------------HHHHHHHTCEE
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHH--------------HHHHHHhCCCE
Confidence 3466666655555566666666664 2344432 245899999999999554 33332222111
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhcc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~ 198 (378)
+.+.+..--....|-....+..+|......
T Consensus 244 ----------~~v~~s~l~sk~~Gese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 244 ----------IFSPASGIVDKYIGESARIIREMFAYAKEH 273 (437)
T ss_dssp ----------EEEEGGGTCCSSSSHHHHHHHHHHHHHHHS
T ss_pred ----------EEEehhhhccccchHHHHHHHHHHHHHHhc
Confidence 111111111233477788899999877654
No 82
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.30 E-value=0.47 Score=44.91 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=27.5
Q ss_pred cccCCCCChHHHHHHHHHHHHHHhh-ccCCcceeeeccCCCCcceEe
Q psy5719 88 KVFKPNATQEKVYDEAAKSIVSDVL-AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 88 ~Vf~~~~~Q~~vf~~~~~~lv~~~l-~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+++.-..+++..+.+. ..+..++ .+...+++-||++|+|||+.+
T Consensus 16 ~~p~~~~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCSCCTTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred cCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333344555555542 2333333 345567999999999999776
No 83
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=78.87 E-value=0.79 Score=40.06 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=17.9
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.| ++..++||||||.+
T Consensus 45 i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 45 IMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHhcCCC--EEEECCCCCcHHHH
Confidence 344567766 67889999999977
No 84
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=78.19 E-value=1.4 Score=41.77 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHHHhhccCC-c--ceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYN-G--TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n-~--~i~ayG~tgSGKTyTm 133 (378)
..+++..+.+ ...+...+.|.. . +++-||++|+|||.++
T Consensus 20 ~gr~~~~~~l-~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQL-DILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHH-HHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHH-HHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 3455555553 334455555533 4 6889999999999776
No 85
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.86 E-value=1.1 Score=42.12 Aligned_cols=41 Identities=29% Similarity=0.426 Sum_probs=25.6
Q ss_pred cccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 86 FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|+.+++ |+++.+. +-..+-.|.-..++-||++|+|||+++.
T Consensus 24 ~~~~~g----~~~~~~~----L~~~i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 24 LDEVYG----QNEVITT----VRKFVDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp GGGCCS----CHHHHHH----HHHHHHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HHHhcC----cHHHHHH----HHHHHhcCCCceEEEECCCCCCHHHHHH
Confidence 566664 4555443 2233334543347889999999998773
No 86
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.77 E-value=1.5 Score=41.41 Aligned_cols=47 Identities=17% Similarity=0.121 Sum_probs=30.6
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCc--ceeeeccCCCCcceEec
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNG--TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~--~i~ayG~tgSGKTyTm~ 134 (378)
.++||.+.+ |+.+... +..++..+..|... .++-||++|+|||+...
T Consensus 40 ~~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CSEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 345677665 4444433 34455555566654 78999999999997763
No 87
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=77.65 E-value=0.9 Score=39.01 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=16.7
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+++|.+ ++..++||||||.+.
T Consensus 34 ~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 34 LALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHcCCCC--EEEECCCCChHHHHH
Confidence 4566766 667889999999763
No 88
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.51 E-value=1.1 Score=38.28 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.5
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+....++-||.+|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344445999999999999776
No 89
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=77.40 E-value=0.48 Score=45.38 Aligned_cols=50 Identities=14% Similarity=0.231 Sum_probs=29.1
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHH-h---hccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSD-V---LAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~-~---l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+|+.|.+.+..-+.+.+.+..|+... + +......|+-||.+|+|||+..
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 467887764433333433333332211 1 2234567899999999999765
No 90
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.60 E-value=1.7 Score=39.37 Aligned_cols=21 Identities=24% Similarity=0.154 Sum_probs=17.5
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 455677999999999999765
No 91
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=76.07 E-value=1 Score=39.98 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=18.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++|.+ ++..++||||||.+.
T Consensus 60 i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 60 IPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567877 678899999999763
No 92
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.96 E-value=2.9 Score=41.37 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=51.1
Q ss_pred EecccccCCCCChHHHHHHHHHHHH-HHhhc--c--CCcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIV-SDVLA--G--YNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~--G--~n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
-+||.|=+-+..-+++.+.+..|+. ...+. | ..-.|+-||++|+|||... +++.+-...-|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLA--------------kAiA~e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLA--------------KAVANQTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHH--------------HHHHHHHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHH--------------HHHHHHhCCCE
Confidence 3556665555445566666655654 22443 2 2356999999999999543 33332221111
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
+.+.+..--....|...+.+..+|.......
T Consensus 245 ----------i~v~~s~l~sk~vGesek~ir~lF~~Ar~~a 275 (437)
T 4b4t_I 245 ----------LRIVGSELIQKYLGDGPRLCRQIFKVAGENA 275 (437)
T ss_dssp ----------EEEESGGGCCSSSSHHHHHHHHHHHHHHHTC
T ss_pred ----------EEEEHHHhhhccCchHHHHHHHHHHHHHhcC
Confidence 1111111112344778889999999876543
No 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.90 E-value=0.87 Score=41.79 Aligned_cols=51 Identities=12% Similarity=0.230 Sum_probs=30.7
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-Hhhcc---CCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.+.+.+..-+.+.+.+..|+.. ..+.| ....|+-||++|+|||+..
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 456788887554444444443333321 12222 3457899999999999665
No 94
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.47 E-value=0.91 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=15.1
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...++-+|++|+|||+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CSEEEEESSSTTTTCHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3456779999999998774
No 95
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=75.20 E-value=1.4 Score=43.60 Aligned_cols=50 Identities=24% Similarity=0.434 Sum_probs=29.2
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+||..... .++...+.. +..+... .|....++-||++|+|||+.+.
T Consensus 99 ~~~~tfd~fv~g-~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 99 NPDYTFENFVVG-PGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CTTCSGGGCCCC-TTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHHH
T ss_pred CCCCChhhcCCC-CchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHHH
Confidence 346888885422 233334433 2233322 1213468899999999998873
No 96
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=74.66 E-value=0.62 Score=41.70 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.7
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3456899999999999766
No 97
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.54 E-value=1 Score=42.37 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=31.8
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-HhhccC---CcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
.+|+.|.+.+..-+.+-+.+..|+-. .++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 46788887665555555554444432 244442 245889999999999765
No 98
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=73.74 E-value=1.1 Score=43.99 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=22.0
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+.+..++......+.-.|+||||||.|+.
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 34555565556678899999999998873
No 99
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.73 E-value=1.4 Score=43.93 Aligned_cols=92 Identities=20% Similarity=0.220 Sum_probs=51.7
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-HhhccC----CcceeeeccCCCCcceEecccCCCCCCCCchhhhhhcccCccc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY----NGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIF 158 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~----n~~i~ayG~tgSGKTyTm~G~~~~~~~~gil~r~l~g~~~~i~ 158 (378)
-+||.|-+-+.--+++-+.+..|+.. ..|.++ .-.|+-||++|+|||... +++.+-...-|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA--------------kAiA~e~~~~f 271 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA--------------RAVANRTDATF 271 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH--------------HHHHHHHTCEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH--------------HHHHhccCCCe
Confidence 55677766555555565555555542 344432 345899999999999543 33332221111
Q ss_pred cccCCCCCCcccccccCCCCCCCCchhhhHHHHHhhhhccc
Q psy5719 159 AYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199 (378)
Q Consensus 159 aygqtgsgKt~tm~g~~~~~~~~Giipr~~~~lf~~l~~~~ 199 (378)
+.+.+..--....|...+.+..+|.......
T Consensus 272 ----------i~vs~s~L~sk~vGesek~ir~lF~~Ar~~a 302 (467)
T 4b4t_H 272 ----------IRVIGSELVQKYVGEGARMVRELFEMARTKK 302 (467)
T ss_dssp ----------EEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC
T ss_pred ----------EEEEhHHhhcccCCHHHHHHHHHHHHHHhcC
Confidence 1111111112344777889999998876543
No 100
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.32 E-value=1.5 Score=43.45 Aligned_cols=46 Identities=17% Similarity=0.130 Sum_probs=30.3
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCC--cceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYN--GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n--~~i~ayG~tgSGKTyTm 133 (378)
.+.|+.|.+ |+++.+.+ ..++..+..|.. ..++-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 455666664 55555543 445566666653 35888999999999665
No 101
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=73.22 E-value=0.47 Score=43.75 Aligned_cols=51 Identities=12% Similarity=0.094 Sum_probs=28.4
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-HhhccCCc----ceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGYNG----TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~n~----~i~ayG~tgSGKTyTm 133 (378)
..+|+.|-+.+...+++.+.++.|+-. .++.+.+. .++-||++|+|||+.+
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 356677766655555666655555532 24443332 2889999999999665
No 102
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=73.08 E-value=2 Score=36.75 Aligned_cols=23 Identities=26% Similarity=0.437 Sum_probs=16.9
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+++|.| ++..++||||||.+.
T Consensus 35 ~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 35 PIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHccCCC--EEEECCCCCchHHHH
Confidence 33456765 677899999999654
No 103
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=71.54 E-value=1.6 Score=37.99 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=17.2
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+++|.+ ++..++||||||.+.
T Consensus 46 ~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 46 PQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCCCchhhhh
Confidence 44566766 667789999999764
No 104
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=71.36 E-value=1.4 Score=39.21 Aligned_cols=24 Identities=33% Similarity=0.648 Sum_probs=18.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.| ++..++||||||.+.
T Consensus 61 i~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 61 IIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCcHHHHH
Confidence 344567766 677999999999763
No 105
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.36 E-value=1.6 Score=39.51 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=17.2
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.| ++..++||||||.+.
T Consensus 86 ~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 86 RPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHhCCCc--EEEEccCCCCchHHH
Confidence 34556766 678899999999663
No 106
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.32 E-value=1.3 Score=41.37 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=18.1
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+..|....++-||++|+|||+++
T Consensus 51 ~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 51 KTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHhcCCCCEEEEECCCCCCHHHHH
Confidence 3344554344889999999999775
No 107
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=71.23 E-value=1.6 Score=40.07 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.7
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
....|+-||++|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3346899999999999776
No 108
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=70.26 E-value=2 Score=40.61 Aligned_cols=38 Identities=18% Similarity=0.207 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHHHHHHhhcc-CCcceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAG-YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G-~n~~i~ayG~tgSGKTyTm 133 (378)
.+++..+.+ ...+..++.| ...+++-||++|+|||..+
T Consensus 24 gr~~~~~~l-~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 24 FREDILRDA-AIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TCHHHHHHH-HHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred ChHHHHHHH-HHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455555554 3344555444 3457999999999999776
No 109
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=70.14 E-value=1.4 Score=42.46 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=19.5
Q ss_pred HHHhhccCCcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
+.+++.-....+.-.|+||||||.|+.
T Consensus 115 l~~l~~~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 115 FKRVSDVPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp HHHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred HHHHHhCCCCEEEEECCCCCCHHHHHH
Confidence 344444445578888999999998873
No 110
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=69.53 E-value=2.3 Score=39.45 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=19.7
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+-.++..++||||||...
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 45567774455789999999999663
No 111
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.30 E-value=1.1 Score=40.34 Aligned_cols=50 Identities=16% Similarity=0.160 Sum_probs=28.4
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-Hhhc----cCCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLA----GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~----G~n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+++.+. +..+.. ..+. .....++-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAEL-VEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHH-HHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHHH-HHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 46788888765444444332 222111 0111 12345899999999999665
No 112
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.08 E-value=1.1 Score=38.55 Aligned_cols=35 Identities=31% Similarity=0.290 Sum_probs=23.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.+..-|.+.+.. +++|.+ ++..++||+|||++..
T Consensus 32 ~~l~~~Q~~~i~~--------~~~~~~--~li~~~tGsGKT~~~~ 66 (216)
T 3b6e_A 32 LQLRPYQMEVAQP--------ALEGKN--IIICLPTGSGKTRVAV 66 (216)
T ss_dssp CCCCHHHHHHHHH--------HHTTCC--EEEECSCHHHHHHHHH
T ss_pred CCchHHHHHHHHH--------HhcCCC--EEEEcCCCCCHHHHHH
Confidence 4555567666554 345655 5678999999997763
No 113
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.72 E-value=2.5 Score=37.15 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=17.2
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.+ ++..++||||||.+.
T Consensus 57 ~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 57 GLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEeCCCCcHHHHH
Confidence 34567766 567789999999764
No 114
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=68.45 E-value=1.4 Score=41.37 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=16.6
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
+....++-||++|+|||..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 44567899999999999776
No 115
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=67.85 E-value=2.8 Score=38.68 Aligned_cols=29 Identities=24% Similarity=0.386 Sum_probs=23.1
Q ss_pred HHHHHHhhccC---CcceeeeccCCCCcceEe
Q psy5719 105 KSIVSDVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 105 ~~lv~~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
...+..+++|. -.||+-||+.|+|||+..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 44577788887 348999999999999665
No 116
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=67.64 E-value=2.6 Score=36.88 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=17.6
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++|.|+ +..++||||||.+.
T Consensus 51 i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 51 WPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHhCCCCE--EEECCCCChHHHHH
Confidence 3445677764 77899999999763
No 117
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=67.63 E-value=1.6 Score=42.12 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=30.9
Q ss_pred CeeEecccccCCCCChHHHHHHHHHHHHH-Hhhc---cCCcceeeeccCCCCcceEe
Q psy5719 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVS-DVLA---GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 81 ~~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~---G~n~~i~ayG~tgSGKTyTm 133 (378)
...++||.|.+.+..-+.+.+.+..|+.. .++. .....|+-||.+|+|||+..
T Consensus 109 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 109 GTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 34567888887544333344333333221 1112 22357899999999999765
No 118
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=67.22 E-value=2.8 Score=37.32 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=17.1
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..+++|.| ++..++||||||.+.
T Consensus 55 ~~i~~~~~--~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 55 PAILEHRD--IMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 34567766 567789999999764
No 119
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.88 E-value=1.7 Score=40.69 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=30.0
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-HhhccC---CcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+.+.+.+..|+.. ..+.+. ...|+-||++|+|||+..
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 356788877554444444444333321 122322 235899999999999765
No 120
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.09 E-value=2.1 Score=40.86 Aligned_cols=51 Identities=16% Similarity=0.266 Sum_probs=31.0
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-HhhccC---CcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGY---NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~---n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+.+.+.+..|+-. .++.+. ...|+-||++|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 356788887665545555544444221 233332 235888999999999765
No 121
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=64.84 E-value=3.1 Score=40.85 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=20.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.+..++..|+||||||..
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 123 LPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHcCCCCcEEEEcCCCCchhHH
Confidence 4456677667789999999999976
No 122
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=64.43 E-value=2.1 Score=39.17 Aligned_cols=19 Identities=42% Similarity=0.574 Sum_probs=15.4
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
.+..+.-.|+||||||.++
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456777899999999877
No 123
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=64.03 E-value=3.6 Score=36.13 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=16.4
Q ss_pred HhhccCCcceeeeccCCCCcceE
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.++.|.| ++..++||||||.+
T Consensus 57 ~~~~~~~--~l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 57 LGRCGLD--LIVQAKSGTGKTCV 77 (230)
T ss_dssp HHHTTCC--EEEECCTTSSHHHH
T ss_pred HHhCCCC--EEEECCCCCcHHHH
Confidence 4567766 56678999999976
No 124
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=63.71 E-value=3.6 Score=36.85 Aligned_cols=23 Identities=35% Similarity=0.482 Sum_probs=16.8
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.+ ++..++||||||.+.
T Consensus 75 ~~i~~~~~--~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 75 PLALQGRD--IIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEcCCCCCchhHh
Confidence 34567766 566789999999764
No 125
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=63.56 E-value=3.3 Score=36.72 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=16.7
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.| ++..++||||||.+.
T Consensus 61 ~~~~~g~~--~l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 61 PVALSGLD--MVGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHTCC--EEEEECTTSCHHHHH
T ss_pred HHHhCCCC--EEEECCCcCHHHHHH
Confidence 34557766 566789999999763
No 126
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=62.96 E-value=3.1 Score=37.86 Aligned_cols=18 Identities=33% Similarity=0.423 Sum_probs=15.3
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 456889999999999776
No 127
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=62.94 E-value=2.3 Score=37.84 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.5
Q ss_pred HHHhhccC--CcceeeeccCCCCcceEec
Q psy5719 108 VSDVLAGY--NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 108 v~~~l~G~--n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++.|. .-+++-||+.|+|||+...
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 44455553 2469999999999997753
No 128
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.91 E-value=3.8 Score=38.91 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=19.4
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+..++.|.+ ++..++||||||.+.
T Consensus 70 ~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 70 AILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HhHHHhCCCC--EEEECCCCCcccHHH
Confidence 3455677877 678999999999763
No 129
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=62.91 E-value=5.8 Score=36.56 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=20.4
Q ss_pred HHHHHHHHhhccC-----CcceeeeccCCCCcceE
Q psy5719 103 AAKSIVSDVLAGY-----NGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 103 ~~~~lv~~~l~G~-----n~~i~ayG~tgSGKTyT 132 (378)
++...+..++.++ ...|+-.|++|||||+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence 3455555555543 34688899999999954
No 130
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=62.82 E-value=2.8 Score=42.56 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=18.6
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++..+..|.+.++++ ++||||||+++.
T Consensus 190 ~~~~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 190 AVQSVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence 344455576655544 999999999864
No 131
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=62.74 E-value=2.6 Score=34.39 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=16.2
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 45566899999999999654
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=62.50 E-value=2 Score=34.99 Aligned_cols=20 Identities=15% Similarity=0.203 Sum_probs=15.6
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+..|+-||.+|+|||+...
T Consensus 26 ~~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHG
T ss_pred CCCcEEEECCCCccHHHHHH
Confidence 34557889999999997653
No 133
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=62.19 E-value=2.1 Score=42.23 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=28.5
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-Hhhcc---CCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+.+.+.+..|+-. .++.| ....|+-||++|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 456777766443333333333333221 23333 2246889999999999765
No 134
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=62.12 E-value=3 Score=41.80 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=29.7
Q ss_pred EecccccCCCCChHHHHHHHHHHHHH-Hhh----ccCCcceeeeccCCCCcceEe
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVS-DVL----AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l----~G~n~~i~ayG~tgSGKTyTm 133 (378)
..|+.+.+.+..-+.+.+.+..++-. .++ ......|+-||.+|+|||+..
T Consensus 201 ~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHH
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHH
Confidence 46677766544445555544333211 122 234456899999999999765
No 135
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=61.45 E-value=2.7 Score=36.52 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=16.2
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+++|.+ ++..++||||||.+.
T Consensus 37 ~~~~~~~--~lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 37 GALRGES--MVGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHTCC--EEEECCSSHHHHHHH
T ss_pred HHhCCCC--EEEECCCCChHHHHH
Confidence 3456765 567899999999763
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=61.39 E-value=3.4 Score=37.85 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+++.+.+ ...+ -.|....++-||++|+|||++.
T Consensus 29 g~~~~~~~l-~~~l---~~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 29 GQEHIVKRL-KHYV---KTGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp SCHHHHHHH-HHHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred CCHHHHHHH-HHHH---HcCCCCeEEEECcCCCCHHHHH
Confidence 355555543 2222 2354445889999999999776
No 137
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=61.14 E-value=5.7 Score=36.90 Aligned_cols=44 Identities=20% Similarity=0.222 Sum_probs=27.5
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhh--ccCCcceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVL--AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l--~G~n~~i~ayG~tgSGKTyTm 133 (378)
+|+.+.+ |..+.+.+ ...+..+. .+....|+-||.+|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l-~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNL-NVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHH-HHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHH-HHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555554 44555443 34444443 244467899999999999765
No 138
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=60.70 E-value=3.9 Score=36.13 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.3
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..|. .++..|+||||||..+
T Consensus 73 i~~g~--~~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 73 ISQNS--VVIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHCS--EEEEECCTTSSHHHHH
T ss_pred HhcCC--EEEEEeCCCCCcHHhH
Confidence 34454 4677899999999654
No 139
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=60.57 E-value=4.4 Score=38.36 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+..++..++||||||...
T Consensus 56 i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 56 LPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHhcCCCCeEEEECCCCchHHHHH
Confidence 44556775566788999999999763
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.95 E-value=3.9 Score=35.05 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-||.+|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999765
No 141
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=59.77 E-value=3.5 Score=42.43 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.9
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++..|.+|||||+|+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVA 182 (608)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 4567889999999998874
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=59.03 E-value=4 Score=41.15 Aligned_cols=20 Identities=35% Similarity=0.532 Sum_probs=15.9
Q ss_pred hccCCcceeeeccCCCCcceEe
Q psy5719 112 LAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 112 l~G~n~~i~ayG~tgSGKTyTm 133 (378)
-.|.+ +.-.|.||||||.||
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35665 677899999999886
No 143
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=58.46 E-value=5 Score=41.78 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=32.0
Q ss_pred EecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 84 F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
|.|.. |.|.-.|..-+... ++.+-.|... ....|.|||||||||-.
T Consensus 2 ~~~~~-~~~~~~q~~ai~~l----~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRG-PSPKGDQPKAIAGL----VEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCS-CCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCC-CCCCCCChHHHHHH----HHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 44444 48889998877654 4555566432 34579999999999964
No 144
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=58.40 E-value=4.8 Score=38.25 Aligned_cols=24 Identities=29% Similarity=0.605 Sum_probs=18.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+ ++..++||||||.+.
T Consensus 68 i~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 68 IKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhCCCC--EEEECCCCCCchHHH
Confidence 445667877 677899999999764
No 145
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=58.30 E-value=3 Score=38.06 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.7
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|....++-||++|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 455445899999999999776
No 146
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.74 E-value=3.6 Score=37.65 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-+|++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 46899999999999776
No 147
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=57.67 E-value=5.3 Score=37.39 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=18.5
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|....++..++||||||.+.
T Consensus 37 ~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 37 PLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHcCCCCeEEEECCCCCcHHHHH
Confidence 4456674456788899999999754
No 148
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=57.66 E-value=4.4 Score=38.50 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=19.4
Q ss_pred HHhhcc---CCcceee--eccCCCCcceEec
Q psy5719 109 SDVLAG---YNGTIFA--YGQTSSGKTHTME 134 (378)
Q Consensus 109 ~~~l~G---~n~~i~a--yG~tgSGKTyTm~ 134 (378)
..+..| ....++- ||..|+|||..+.
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHHH
Confidence 555555 4557888 9999999997763
No 149
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=57.53 E-value=4.4 Score=38.82 Aligned_cols=22 Identities=23% Similarity=0.288 Sum_probs=16.7
Q ss_pred HHhhccCCcceeeeccCCCCcceE
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
..+++|.| ++..++||||||..
T Consensus 31 ~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 31 KRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHhcCCC--EEEEeCCCCCHHHH
Confidence 34567765 67889999999973
No 150
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=57.35 E-value=4.4 Score=37.64 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+++-..+. ..+..| ..++-||.+|+|||+.+
T Consensus 31 g~~~~~~~l~----~~l~~~--~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 31 GQKYMINRLL----IGICTG--GHILLEGVPGLAKTLSV 63 (331)
T ss_dssp SCHHHHHHHH----HHHHHT--CCEEEESCCCHHHHHHH
T ss_pred CcHHHHHHHH----HHHHcC--CeEEEECCCCCcHHHHH
Confidence 3555544433 233334 35788999999999776
No 151
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=56.86 E-value=4 Score=40.36 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..|+.+... ...+...+-.|.-..++-||++|+|||+..
T Consensus 29 vGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 29 IGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 346655532 133334444565568999999999999665
No 152
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=56.72 E-value=4.5 Score=36.04 Aligned_cols=38 Identities=29% Similarity=0.184 Sum_probs=24.8
Q ss_pred ccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 87 DKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 87 D~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
..-|.+..-|.+.+.. ++++.+ ++..|+||+|||+...
T Consensus 89 ~~~~~l~~~Q~~ai~~--------~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 89 DAEISLRDYQEKALER--------WLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp CCCCCCCHHHHHHHHH--------HTTTSE--EEEEESSSTTHHHHHH
T ss_pred cCCCCcCHHHHHHHHH--------HHhCCC--EEEEeCCCCCHHHHHH
Confidence 3345555566665543 445555 6677899999997754
No 153
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=55.87 E-value=9 Score=35.08 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=26.0
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhh--ccCCcceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVL--AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l--~G~n~~i~ayG~tgSGKTyTm 133 (378)
+|+.+.+. ..+... +...+..+. .+....|+-||.+|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~-l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQK-LRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHH-HHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHH-HHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 45666553 333333 233333333 234467888999999999765
No 154
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.87 E-value=2.7 Score=40.53 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=18.5
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+.++.-.....+.-.|+||||||.++
T Consensus 128 l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 128 VLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp HHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 34433334456788999999999887
No 155
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=55.19 E-value=4.5 Score=40.39 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHhhccCCcceeeeccCCCCcceE
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
..++.|.+-.++..++||||||++
T Consensus 151 ~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 151 PLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp HHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHcCCCCCEEEECCCCccHHHH
Confidence 445677445678899999999986
No 156
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=54.19 E-value=5.7 Score=37.54 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=17.1
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.+ ++..++||||||.+.
T Consensus 53 ~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 53 PVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHhcCCC--EEEECCCCcHHHHHH
Confidence 34456766 677899999999754
No 157
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=53.32 E-value=6.8 Score=35.78 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=16.4
Q ss_pred HhhccCCcceeeeccCCCCcceEe
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+++|.+ ++..++||||||.+.
T Consensus 27 ~i~~~~~--~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 27 LMLQGKN--VVVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHhcCCC--EEEEcCCCCcHHHHH
Confidence 3456765 567789999999765
No 158
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=53.17 E-value=6.6 Score=38.20 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=18.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+ ++..++||||||...
T Consensus 87 i~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 87 IPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHhcCCC--EEEECCCCCCchHHH
Confidence 344567766 678889999999753
No 159
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=52.85 E-value=5.5 Score=35.73 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.2
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|++|||||+.
T Consensus 33 ~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTI 48 (253)
T ss_dssp EEEEEESCGGGTTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578889999999954
No 160
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=52.76 E-value=4.2 Score=42.02 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.0
Q ss_pred eeeeccCCCCcceEecc
Q psy5719 119 IFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~G 135 (378)
.+-.|+.|||||+|+..
T Consensus 208 ~lI~GPPGTGKT~ti~~ 224 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVE 224 (646)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred eEEECCCCCCHHHHHHH
Confidence 45679999999999853
No 161
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.55 E-value=6.9 Score=37.15 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=17.3
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.| ++..++||||||.+.
T Consensus 47 ~~i~~~~~--~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 47 PIIKEKRD--LMACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHccCCC--EEEEcCCCCHHHHHH
Confidence 34567776 467899999999754
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=52.01 E-value=7.5 Score=36.44 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=13.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-||++|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 34677999999999765
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=51.77 E-value=5.8 Score=36.19 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.-..++-||++|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444344889999999999765
No 164
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=51.68 E-value=3.6 Score=37.44 Aligned_cols=34 Identities=21% Similarity=0.126 Sum_probs=20.5
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+..-|.+.+.. ++.+.++ +..++||||||.+..
T Consensus 113 ~l~~~Q~~ai~~--------~l~~~~~--ll~~~tGsGKT~~~~ 146 (282)
T 1rif_A 113 EPHWYQKDAVFE--------GLVNRRR--ILNLPTSAGRSLIQA 146 (282)
T ss_dssp CCCHHHHHHHHH--------HHHHSEE--EECCCTTSCHHHHHH
T ss_pred CccHHHHHHHHH--------HHhcCCe--EEEcCCCCCcHHHHH
Confidence 333336655544 3334443 338999999997763
No 165
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=51.60 E-value=7.1 Score=39.09 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.9
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.+-.++..++||||||.+
T Consensus 103 i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 103 IKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHhcCCCCeEEEECCCCCCccHH
Confidence 4455655555678899999999976
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=51.51 E-value=8.1 Score=35.65 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..++-||++|+|||+++.
T Consensus 49 ~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp SEEEECSSTTSSHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 457888999999998763
No 167
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=51.36 E-value=5.2 Score=34.96 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=20.2
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.| ....+.-+|.+|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 456677753 2345778899999999765
No 168
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.03 E-value=5.6 Score=42.55 Aligned_cols=30 Identities=23% Similarity=0.362 Sum_probs=21.0
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.++..+..+....++-||.+|+|||+.+.+
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 334444455555678899999999987754
No 169
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=50.97 E-value=6.9 Score=36.29 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.7
Q ss_pred cCCcceeeeccCCCCcceEe
Q psy5719 114 GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyTm 133 (378)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 45677899999999999765
No 170
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.38 E-value=4.9 Score=40.13 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=27.6
Q ss_pred eEecccccCCCCChHHHHHHHHHHHH-HHhhcc----CCcceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIV-SDVLAG----YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv-~~~l~G----~n~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|.+.+..-+++-+- +..+- ...+.. ....|+-||++|+|||+..
T Consensus 12 ~~~f~di~G~~~~~~~l~e~-v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEV-VEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHH-HHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHH-HHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 46788887754433333332 11110 011221 2234899999999999765
No 171
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=50.33 E-value=3.3 Score=41.71 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.9
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|+-||++|+|||+.+
T Consensus 66 GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3899999999999765
No 172
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=50.20 E-value=7.9 Score=41.15 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=28.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|.+..-|.+++..+. .+.-.+....++..|+||||||...
T Consensus 367 f~lt~~Q~~ai~~I~----~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 367 FKLTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SCCCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCCHHHHHHHHHHH----hhccccCCCcEEEEcCCCCCHHHHH
Confidence 356667887776653 3444566667889999999999764
No 173
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=49.78 E-value=7.2 Score=38.36 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+..|++.+..+. ..+..+. ..++-.|..|||||+++
T Consensus 26 Ln~~Q~~av~~~~----~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 26 LTEGQKNAFNIVM----KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CCHHHHHHHHHHH----HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CCHHHHHHHHHHH----HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 3557887776653 2233333 47888999999999876
No 174
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=49.14 E-value=10 Score=37.40 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=20.1
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
++..+-.+....++-||.+|+|||+...+
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 33333345556678899999999977643
No 175
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=48.99 E-value=9 Score=39.79 Aligned_cols=48 Identities=23% Similarity=0.355 Sum_probs=35.6
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
.|....-|.|...|..-++.+ ++.+-.|... ....|.|||||||||-.
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~l----~~~~~~~~~~-~~l~g~~gs~k~~~~a~ 51 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEKL----VKGIQEGKKH-QTLLGATGTGKTFTVSN 51 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHHH----HHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHHH----HHHHhcCCCc-EEEECcCCcHHHHHHHH
Confidence 477777789999999887664 4555556432 34569999999999964
No 176
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=48.60 E-value=5.6 Score=34.91 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=16.8
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+++++-.|.-. .-.|++|||||..+
T Consensus 15 ~l~~i~~Ge~~--~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIV--FGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEE--EEECCTTSSTTHHH
T ss_pred HHHhccCCCEE--EEECCCCCCHHHHH
Confidence 44455455443 44799999999665
No 177
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=48.53 E-value=9.6 Score=38.99 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.-|++++. .++.|.+ ++..++||+|||.+
T Consensus 47 p~Q~~~i~--------~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 47 PLQLETIN--------VTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp TTHHHHHH--------HHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHH--------HHHcCCC--EEEEECCCChHHHH
Confidence 45665554 4567877 67789999999975
No 178
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=47.24 E-value=11 Score=35.18 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.4
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||.|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667799999999877
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.91 E-value=5.5 Score=37.15 Aligned_cols=15 Identities=27% Similarity=0.638 Sum_probs=13.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 888999999999876
No 180
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=46.87 E-value=9.4 Score=35.73 Aligned_cols=24 Identities=17% Similarity=0.476 Sum_probs=17.6
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.+ ++..++||+|||.+.
T Consensus 39 i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 39 IPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHhcCCc--EEEECCCCCcHHHHH
Confidence 344566766 567789999999764
No 181
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=46.53 E-value=12 Score=34.99 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHHHHHHhhccC-CcceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGY-NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~-n~~i~ayG~tgSGKTyTm 133 (378)
..|+++.+.+. ..+ -.|. ...++-||.+|+|||.++
T Consensus 19 vg~~~~~~~L~-~~l---~~~~~~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 19 VGQEHVLTALA-NGL---SLGRIHHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSCHHHHHHHH-HHH---HHTCCCSEEEEESCTTSSHHHHH
T ss_pred cCcHHHHHHHH-HHH---HhCCCCeEEEEECCCCCCHHHHH
Confidence 34555555432 222 2333 345789999999999776
No 182
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=46.29 E-value=6.7 Score=36.25 Aligned_cols=22 Identities=36% Similarity=0.368 Sum_probs=15.7
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|. ..++..++||||||.+.
T Consensus 40 ~~~~~-~~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 40 FLNDE-YNIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHTC-SEEEEECCSSSSHHHHH
T ss_pred HhCCC-CCEEEECCCCChHHHHH
Confidence 34553 24567899999999774
No 183
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.00 E-value=9.6 Score=32.67 Aligned_cols=30 Identities=23% Similarity=0.160 Sum_probs=19.4
Q ss_pred HHHHHHHhhc---cCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLA---GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~---G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++.+.. .....|.-.|.+|||||..+
T Consensus 7 ~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 7 IDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp HHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHHHHhccCCCeEEEEECCCCCCHHHHH
Confidence 3444555553 23345777899999999654
No 184
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=45.95 E-value=9.8 Score=37.58 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.3
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.| ++..++||||||.+.
T Consensus 17 ~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 17 QPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEEcCCCChHHHHH
Confidence 34567776 567889999999764
No 185
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=45.87 E-value=6.4 Score=33.89 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=18.0
Q ss_pred HHHHhhc-cC--CcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLA-GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~-G~--n~~i~ayG~tgSGKTyTm 133 (378)
-++.++. |. ...+.-+|.+|||||..+
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 3455554 32 234666899999999665
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=45.77 E-value=13 Score=39.75 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=37.2
Q ss_pred eEecccccCCCCChHHHHHHHHHHHHH-HhhccCC----cceeeeccCCCCcceEe
Q psy5719 83 FYLFDKVFKPNATQEKVYDEAAKSIVS-DVLAGYN----GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 83 ~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~G~n----~~i~ayG~tgSGKTyTm 133 (378)
..+|+.|-+-+..-+++.+.+..|+.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 467888888877777787776666653 3555544 35999999999999443
No 187
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=44.58 E-value=7.5 Score=37.94 Aligned_cols=35 Identities=29% Similarity=0.176 Sum_probs=23.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.+..-|.+.+.. ++.+.+ ++..+.||+|||++..
T Consensus 92 ~~l~~~Q~~ai~~--------i~~~~~--~ll~~~TGsGKT~~~l 126 (472)
T 2fwr_A 92 ISLRDYQEKALER--------WLVDKR--GCIVLPTGSGKTHVAM 126 (472)
T ss_dssp CCBCHHHHHHHHH--------HTTTTE--EEEECCTTSCHHHHHH
T ss_pred CCcCHHHHHHHHH--------HHhcCC--EEEEeCCCCCHHHHHH
Confidence 4555667666554 445544 6678899999998753
No 188
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=43.93 E-value=11 Score=38.07 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=18.3
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.+--++..++||||||.+
T Consensus 52 i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 52 IKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHccCCCeEEEEcCCCcHHHHH
Confidence 3445655455678899999999975
No 189
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=43.51 E-value=7.2 Score=36.54 Aligned_cols=23 Identities=30% Similarity=0.549 Sum_probs=16.9
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.+ ++..++||||||.+.
T Consensus 53 ~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 53 MPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHhCCCC--EEEECCCCChHHHHH
Confidence 34556766 567799999999773
No 190
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=43.45 E-value=5 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.4
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.+.-.|.+|||||..+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45668999999997663
No 191
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=43.34 E-value=12 Score=35.33 Aligned_cols=18 Identities=39% Similarity=0.397 Sum_probs=14.2
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...+.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345666799999999776
No 192
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=42.80 E-value=10 Score=32.60 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=18.7
Q ss_pred HHHHHHHhhc--cCCcceeeeccCCCCcceEe
Q psy5719 104 AKSIVSDVLA--GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 104 ~~~lv~~~l~--G~n~~i~ayG~tgSGKTyTm 133 (378)
+..+++.+.. ...-.|.-.|.+|||||+.+
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 3444454443 33345566799999999655
No 193
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=42.72 E-value=7.1 Score=36.92 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=14.9
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456888999999999654
No 194
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=42.46 E-value=6.9 Score=31.82 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||+.
T Consensus 3 ~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 3 VILITGMPGSGKSEF 17 (179)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999943
No 195
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=42.29 E-value=6.4 Score=38.62 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=18.1
Q ss_pred HHHhhccCCcceeeeccCCCCcceE
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
+..++.|.+. ++..++||||||..
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhH
Confidence 4456777664 56789999999975
No 196
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=42.22 E-value=5.7 Score=38.06 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.6
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
|..++-.|.||||||+++
T Consensus 35 ~~~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred cCceEEEcCCCCCHHHHH
Confidence 445677899999999876
No 197
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=42.17 E-value=12 Score=35.38 Aligned_cols=18 Identities=39% Similarity=0.490 Sum_probs=15.2
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|+-||.+|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 456899999999999765
No 198
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=41.97 E-value=12 Score=36.72 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=17.1
Q ss_pred HHhhccCCcceeeeccCCCCcceEe
Q psy5719 109 SDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 109 ~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..++.|.+ ++..++||||||.+.
T Consensus 14 ~~~~~~~~--~l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 14 LPAKKGKN--TIICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHhCCCC--EEEEeCCCChHHHHH
Confidence 34467766 567799999999763
No 199
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=41.80 E-value=8.6 Score=39.53 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.2
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
...+-.|++|||||+|+..
T Consensus 196 ~~~li~GppGTGKT~~~~~ 214 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSAT 214 (624)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHH
Confidence 3466789999999999743
No 200
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=41.74 E-value=13 Score=31.72 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHHHHhhc-cCC--cceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GYN--GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~n--~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |.. ..+.-+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 44666775 443 45788999999999654
No 201
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=41.49 E-value=8.9 Score=33.00 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=19.0
Q ss_pred HHHHHhhc-cC--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |. ...+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 44566664 33 235677899999999665
No 202
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=41.39 E-value=13 Score=39.06 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+--|.+|||||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999764
No 203
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=41.33 E-value=5.7 Score=38.59 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.5
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 556789999999999876
No 204
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=41.20 E-value=14 Score=35.41 Aligned_cols=16 Identities=31% Similarity=0.551 Sum_probs=13.5
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||.|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4667799999999877
No 205
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=40.90 E-value=13 Score=38.24 Aligned_cols=32 Identities=28% Similarity=0.317 Sum_probs=21.4
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.+..-|.+++. .++.|.| ++..++||||||..
T Consensus 13 ~lr~~Q~~~i~--------~~l~g~~--~iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 13 KPRNYQLELAL--------PAMKGKN--TIICAPTGCGKTFV 44 (696)
T ss_dssp CCCHHHHHHHH--------HHHTTCC--EEEECCTTSSHHHH
T ss_pred CccHHHHHHHH--------HHHcCCC--EEEEcCCCchHHHH
Confidence 34444655544 3456776 56788999999974
No 206
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=40.38 E-value=18 Score=38.00 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=19.8
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
++..+..+....++-||.+|+|||....
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 3343444555668899999999997653
No 207
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=39.96 E-value=13 Score=38.26 Aligned_cols=34 Identities=29% Similarity=0.297 Sum_probs=22.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|.+..-|.+++.. +++|.+ ++..++||||||.+.
T Consensus 6 ~~l~~~Q~~~i~~--------il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 6 LQLRPYQMEVAQP--------ALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp -CCCHHHHHHHHH--------HHSSCC--EEECCCTTSCHHHHH
T ss_pred CCccHHHHHHHHH--------HHhCCC--EEEEcCCCCcHHHHH
Confidence 3444456555444 456766 577899999999765
No 208
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=39.59 E-value=8 Score=39.47 Aligned_cols=19 Identities=21% Similarity=0.364 Sum_probs=15.5
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
+..++-.|..|||||+|+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~ 222 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTK 222 (574)
T ss_dssp CSEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHH
Confidence 3566778999999998874
No 209
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=39.56 E-value=15 Score=36.92 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=17.4
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|. .|+-||++|+|||+..
T Consensus 35 ~~al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHHHhcCC--eeEeecCchHHHHHHH
Confidence 33444454 5788999999999765
No 210
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=39.45 E-value=14 Score=39.16 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+..|.+|||||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 699999999999999999764
No 211
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=39.41 E-value=7.5 Score=36.26 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=14.1
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|.-.|++|||||.++
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345566799999999776
No 212
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=39.28 E-value=8.3 Score=31.76 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||+.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 577889999999953
No 213
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=38.95 E-value=13 Score=34.16 Aligned_cols=73 Identities=14% Similarity=0.188 Sum_probs=39.1
Q ss_pred hhHHHHhhhcceeccccccCC--CC-----------CcCCCCeeEecccccCCCC--ChHHHHHHHHHHHHHHhh-ccCC
Q psy5719 53 YQYEVDRIKEAVRQKNLARRG--PA-----------PQIGKGKFYLFDKVFKPNA--TQEKVYDEAAKSIVSDVL-AGYN 116 (378)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~F~FD~Vf~~~~--~Q~~vf~~~~~~lv~~~l-~G~n 116 (378)
+-|.++++||.||+---.... |. ...+..+.|.|++|-+... .++-+++++ +.-.+-++ .+.|
T Consensus 4 LeNSIdElkG~iRcFAYi~e~~l~~~~~IdY~~~tI~~~~~~~~y~F~RiIp~~~~~e~~ll~qE~-~~Y~DmCL~k~~N 82 (275)
T 4gkp_A 4 LLNSITELKGCARLFANIIEDEISEKLIVNYSDESIEDMKNHKTYKFTKLIQNFSHQNKDLFKEDL-HVYIDFCLKRREN 82 (275)
T ss_dssp ------------CEEEEEETTTSCTTEEEETTTTEEEETTTTEEEECSEEEEECSSSCCCGGGTHH-HHHHHHHHHTTCC
T ss_pred ccccHHHhcCcEEEEEEEccccCCccEEEecccceeccCCCccEEEEEeeeccccCCHHHHHHHHH-HHHHHHHhccCCC
Confidence 457899999999995432211 11 1246678999999986433 344455554 66777777 4999
Q ss_pred cceeeeccCC
Q psy5719 117 GTIFAYGQTS 126 (378)
Q Consensus 117 ~~i~ayG~tg 126 (378)
+.|++-++.-
T Consensus 83 fnlISiS~~~ 92 (275)
T 4gkp_A 83 FNLFSVGSSN 92 (275)
T ss_dssp EEEEEECCSS
T ss_pred ceEEEecCCC
Confidence 9999988755
No 214
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=38.87 E-value=14 Score=39.18 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+--|.+|||||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 599999999999999999663
No 215
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=38.74 E-value=11 Score=34.85 Aligned_cols=18 Identities=39% Similarity=0.613 Sum_probs=14.3
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..|.-.|.+|+|||+|+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 356667999999998873
No 216
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=38.59 E-value=7.3 Score=32.97 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||.++
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445799999999765
No 217
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=37.98 E-value=11 Score=35.98 Aligned_cols=34 Identities=24% Similarity=0.227 Sum_probs=22.2
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
|.+..-|.+.+. .++.| .++..++||+|||.+..
T Consensus 8 ~~l~~~Q~~~i~--------~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 8 IQPRIYQEVIYA--------KCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HCCCHHHHHHHH--------HGGGS---CEEEECCTTSCHHHHHH
T ss_pred CCccHHHHHHHH--------HHhhC---CEEEEcCCCCCHHHHHH
Confidence 444445555443 45566 45667899999998764
No 218
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=37.83 E-value=9.4 Score=38.93 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=16.7
Q ss_pred CCcceeeeccCCCCcceEec
Q psy5719 115 YNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm~ 134 (378)
.++.++-.|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35667889999999999985
No 219
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=37.53 E-value=9.2 Score=31.89 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||..
T Consensus 7 ~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 7 NIYLIGLMGAGKTSV 21 (185)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999943
No 220
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=37.40 E-value=9.9 Score=31.42 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=13.2
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|.+|||||..
T Consensus 4 ~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGI 19 (178)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999944
No 221
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=37.31 E-value=15 Score=40.16 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+..|.+|||||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 699999999999999999764
No 222
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=36.99 E-value=16 Score=38.88 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+-.|.+|||||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999764
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=36.97 E-value=23 Score=34.79 Aligned_cols=17 Identities=41% Similarity=0.374 Sum_probs=13.8
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|+-.|.+|+|||+|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45666699999999886
No 224
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=36.94 E-value=15 Score=39.39 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+..|.+|||||.+.
T Consensus 166 ~~~nQsIiiSGESGAGKTe~t 186 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTENT 186 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEeCCCCCCchhhH
Confidence 699999999999999999764
No 225
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=36.64 E-value=16 Score=38.72 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+.-|.+|||||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 699999999999999999764
No 226
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=36.58 E-value=7.4 Score=33.66 Aligned_cols=17 Identities=24% Similarity=0.184 Sum_probs=13.3
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|.-.|++|||||.++
T Consensus 9 ~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred cEEEEECcCCCCHHHHH
Confidence 34566799999999665
No 227
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=36.36 E-value=10 Score=31.63 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=13.6
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|+-.|.+|||||+..
T Consensus 12 ~~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLG 28 (180)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEEeCCCCCHHHHH
Confidence 35788999999999543
No 228
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=36.35 E-value=7.5 Score=32.97 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=12.3
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||..+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3455699999999655
No 229
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=36.30 E-value=7.6 Score=34.88 Aligned_cols=19 Identities=26% Similarity=0.205 Sum_probs=16.2
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
..||..|..|+||||+|..
T Consensus 7 l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4588999999999999854
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.26 E-value=43 Score=35.03 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHhhccCC------cceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYN------GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n------~~i~ayG~tgSGKTyTm 133 (378)
.|.+.-+.+. ..+.....|.. +.++-||++|+|||+..
T Consensus 495 Gq~~a~~~l~-~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 495 GQDEAVVAVA-KAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp SCHHHHHHHH-HHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 4555555543 33333443433 26899999999999765
No 231
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=36.24 E-value=16 Score=39.85 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+..|.+|||||.+.
T Consensus 143 ~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 699999999999999999764
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=36.19 E-value=15 Score=31.83 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=17.7
Q ss_pred HHHhhcc-C--CcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAG-Y--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G-~--n~~i~ayG~tgSGKTyTm 133 (378)
++.++.| . ...+.-+|.+|+|||..+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 4555543 2 345677999999999664
No 233
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=36.14 E-value=17 Score=40.53 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.||+..|.+|||||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 699999999999999999764
No 234
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.07 E-value=20 Score=37.45 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=20.4
Q ss_pred HHHHhhccCCcceeeeccCCCCcceEecc
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTyTm~G 135 (378)
+++.+.......++-||.+|+|||+.+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHHHH
Confidence 34444444556678899999999977643
No 235
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=34.82 E-value=7.2 Score=33.35 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=15.0
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
.++-||..|+|||+.+.+
T Consensus 5 i~vi~G~~gsGKTT~ll~ 22 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLS 22 (184)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467799999999988754
No 236
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=34.65 E-value=28 Score=32.18 Aligned_cols=16 Identities=38% Similarity=0.503 Sum_probs=12.8
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|...|.+|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999776
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=34.57 E-value=8.4 Score=32.41 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999654
No 238
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=34.55 E-value=27 Score=34.39 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=15.7
Q ss_pred CcceeeeccCCCCcceEec
Q psy5719 116 NGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~ 134 (378)
...|+-.|.+|+|||+|+.
T Consensus 100 p~vIlivG~~G~GKTTt~~ 118 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVA 118 (443)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHH
Confidence 4567888999999998874
No 239
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=34.49 E-value=8.4 Score=32.73 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=12.0
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999765
No 240
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=34.48 E-value=18 Score=39.86 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|-||+-.|.+|||||.+.
T Consensus 153 ~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchH
Confidence 699999999999999999764
No 241
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=34.34 E-value=17 Score=39.83 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.3
Q ss_pred HHHHhhccCCcceeeeccCCCCcce
Q psy5719 107 IVSDVLAGYNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 107 lv~~~l~G~n~~i~ayG~tgSGKTy 131 (378)
.+..+++|.| ++..++||||||.
T Consensus 64 ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 64 WAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHhCCC--EEEEcCCCCCHHH
Confidence 3445677866 5678999999994
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=34.33 E-value=8.3 Score=32.33 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=13.0
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-.|.+|||||..+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999654
No 243
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=34.03 E-value=7.6 Score=34.59 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=16.9
Q ss_pred CcceeeeccCCCCcceEeccc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEGV 136 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G~ 136 (378)
...++-||.+|+|||..+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~ 32 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRR 32 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHH
Confidence 356788999999999888753
No 244
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=34.02 E-value=8.7 Score=32.99 Aligned_cols=16 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||..+
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999666
No 245
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=33.99 E-value=19 Score=39.58 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.2
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+.|-||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 699999999999999999764
No 246
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=33.72 E-value=13 Score=39.48 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.5
Q ss_pred ceeeeccCCCCcceEec
Q psy5719 118 TIFAYGQTSSGKTHTME 134 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~ 134 (378)
.++-.|..|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 45778999999999974
No 247
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=33.68 E-value=10 Score=37.98 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=20.9
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..-|.+++.. +++|.+ ++..++||||||.+.
T Consensus 27 r~~Q~~~i~~--------il~g~d--~lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 27 RPGQEEIIDT--------VLSGRD--CLVVMPTGGGKSLCY 57 (523)
T ss_dssp CTTHHHHHHH--------HHTTCC--EEEECSCHHHHHHHH
T ss_pred CHHHHHHHHH--------HHcCCC--EEEECCCCcHHHHHH
Confidence 3457665544 467776 455679999999743
No 248
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=33.61 E-value=16 Score=36.52 Aligned_cols=17 Identities=29% Similarity=0.472 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57889999999999775
No 249
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=33.19 E-value=8.9 Score=35.03 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.3
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
+-++.-.|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 346777899999999665
No 250
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=33.17 E-value=8.9 Score=37.56 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=19.1
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+++|.+..|.-.|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 57888888999999999999755
No 251
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=33.05 E-value=14 Score=39.24 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.3
Q ss_pred cceeeeccCCCCcceEecc
Q psy5719 117 GTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~G 135 (378)
...+-.|..|||||+|+..
T Consensus 372 ~~~lI~GppGTGKT~ti~~ 390 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSAT 390 (800)
T ss_dssp SEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHH
Confidence 3457789999999999753
No 252
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=32.98 E-value=20 Score=39.17 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=22.1
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
|.++.-|.++. ..++.|.+ ++..++||||||.+
T Consensus 38 f~l~~~Q~~aI--------~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 38 FELDTFQKEAV--------YHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp SCCCHHHHHHH--------HHHHTTCE--EEEECCTTSCSHHH
T ss_pred CCCCHHHHHHH--------HHHHcCCC--EEEEECCCCcHHHH
Confidence 34555565544 34566754 67899999999953
No 253
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=32.45 E-value=17 Score=39.38 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~il~g~~--~ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHcCCC--EEEEeCCCchHHHHH
Confidence 334567876 566889999999774
No 254
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=32.28 E-value=13 Score=30.79 Aligned_cols=16 Identities=19% Similarity=0.320 Sum_probs=13.0
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 4 ~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577889999999954
No 255
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=32.14 E-value=9.1 Score=35.46 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=16.1
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+++|.+..|.-.|.+|+|||..|
T Consensus 13 ~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 13 VKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp -----CEEEEEEEETTSSHHHHH
T ss_pred EEcCCCEEEEEECCCCCCHHHHH
Confidence 67888889999999999999655
No 256
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=32.11 E-value=16 Score=38.89 Aligned_cols=52 Identities=15% Similarity=0.144 Sum_probs=35.1
Q ss_pred eeEecccccCCCCChHHHHHHHHHHHHH-Hhhc----cCCcceeeeccCCCCcceEe
Q psy5719 82 KFYLFDKVFKPNATQEKVYDEAAKSIVS-DVLA----GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 82 ~~F~FD~Vf~~~~~Q~~vf~~~~~~lv~-~~l~----G~n~~i~ayG~tgSGKTyTm 133 (378)
..++||.|-+.+..-+.+.+.+..|+.. .++. .....|+-||.+|||||+.+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4578899888777667777666555442 2332 22345888999999999655
No 257
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=31.96 E-value=14 Score=36.40 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=22.3
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEec
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm~ 134 (378)
.+..-|.+....+ +.|.+ ++..|+||||||.+..
T Consensus 113 ~l~~~Q~~ai~~~--------~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 113 EPHWYQKDAVFEG--------LVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp CCCHHHHHHHHHH--------HHHSE--EEEECCSTTTHHHHHH
T ss_pred CCCHHHHHHHHHH--------HhcCC--cEEEeCCCCCHHHHHH
Confidence 4555566655443 34444 4678999999998864
No 258
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=31.94 E-value=10 Score=33.03 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=12.8
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||..+
T Consensus 32 ~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4555899999999766
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=31.84 E-value=10 Score=31.92 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|.+|||||.++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3556799999999655
No 260
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=31.71 E-value=23 Score=32.93 Aligned_cols=35 Identities=11% Similarity=0.159 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHHHhhccCC-cceeeeccCCCCcceEe
Q psy5719 95 TQEKVYDEAAKSIVSDVLAGYN-GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 95 ~Q~~vf~~~~~~lv~~~l~G~n-~~i~ayG~tgSGKTyTm 133 (378)
.|+++++.. ...+-.|.- -.++-||+.|+|||.+.
T Consensus 6 w~~~~~~~l----~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 6 WLRPDFEKL----VASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp GGHHHHHHH----HHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred chHHHHHHH----HHHHHcCCcceeEEEECCCCchHHHHH
Confidence 355555543 333445543 35888999999999765
No 261
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=31.64 E-value=11 Score=36.03 Aligned_cols=19 Identities=42% Similarity=0.429 Sum_probs=14.0
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.+ +.--|.||||||.++
T Consensus 174 ~G~~--i~ivG~sGsGKSTll 192 (361)
T 2gza_A 174 LERV--IVVAGETGSGKTTLM 192 (361)
T ss_dssp TTCC--EEEEESSSSCHHHHH
T ss_pred cCCE--EEEECCCCCCHHHHH
Confidence 4554 444599999999776
No 262
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=31.59 E-value=29 Score=36.97 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.8
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999765
No 263
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=31.46 E-value=25 Score=36.75 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
+.++-||++|+|||++.
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46899999999999765
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=31.41 E-value=13 Score=30.43 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|.+|||||+.
T Consensus 6 ~i~l~G~~GsGKSTl 20 (173)
T 1kag_A 6 NIFLVGPMGAGKSTI 20 (173)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477789999999954
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=31.23 E-value=11 Score=35.57 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=14.4
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|. .+.-.|.||||||.++
T Consensus 170 ~g~--~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGK--NVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTC--CEEEEESTTSCHHHHH
T ss_pred CCC--EEEEECCCCCCHHHHH
Confidence 455 4556799999999765
No 266
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=31.08 E-value=22 Score=37.40 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=17.9
Q ss_pred HHHhhccCCcceeeeccCCCCcceEe
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..++.|.| ++..++||||||.+.
T Consensus 257 i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 257 AQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCChHHHHH
Confidence 344567766 567899999999764
No 267
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=30.95 E-value=11 Score=32.54 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=12.9
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|+|||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3556799999999776
No 268
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=30.47 E-value=17 Score=35.33 Aligned_cols=16 Identities=19% Similarity=0.146 Sum_probs=13.4
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678999999999764
No 269
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=30.37 E-value=11 Score=31.93 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.7
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-.|.+|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999554
No 270
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=30.30 E-value=14 Score=30.80 Aligned_cols=16 Identities=31% Similarity=0.493 Sum_probs=13.2
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999954
No 271
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=30.13 E-value=15 Score=32.82 Aligned_cols=14 Identities=50% Similarity=0.700 Sum_probs=11.7
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|.+|||||.
T Consensus 3 li~I~G~~GSGKST 16 (253)
T 2ze6_A 3 LHLIYGPTCSGKTD 16 (253)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCcCHHH
Confidence 36778999999994
No 272
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=30.07 E-value=13 Score=38.31 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred CcceeeeccCCCCcceEecc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G 135 (378)
++.++-.|..|||||+|+..
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ 34 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITN 34 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHHH
Confidence 56677889999999999863
No 273
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=30.06 E-value=15 Score=29.89 Aligned_cols=15 Identities=20% Similarity=0.126 Sum_probs=12.0
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999944
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=29.90 E-value=11 Score=35.14 Aligned_cols=17 Identities=29% Similarity=0.384 Sum_probs=14.1
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|+-.|++|+|||.|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35677899999999876
No 275
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=29.87 E-value=22 Score=35.67 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=13.3
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4667799999999776
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=29.87 E-value=32 Score=31.66 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=14.0
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
....|.-.|.+|||||...
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3345666799999999654
No 277
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=29.78 E-value=10 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.230 Sum_probs=15.3
Q ss_pred ceeeeccCCCCcceEecc
Q psy5719 118 TIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm~G 135 (378)
..+-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567799999999988765
No 278
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=29.75 E-value=32 Score=32.90 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.9
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|.-..|+-.|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 466667888999999999554
No 279
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=29.38 E-value=13 Score=32.45 Aligned_cols=16 Identities=19% Similarity=0.266 Sum_probs=8.4
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.+.-.|++|||||.++
T Consensus 29 ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEEECSCC----CHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455799999999665
No 280
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=29.12 E-value=25 Score=36.12 Aligned_cols=38 Identities=24% Similarity=0.214 Sum_probs=23.8
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
|.|-..|.++-+.+... +.+|. .+++-.+||+|||...
T Consensus 2 ~~~R~~Q~~~~~~v~~~----l~~~~--~~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSS----LQKSY--GVALESPTGSGKTIMA 39 (620)
T ss_dssp ---CHHHHHHHHHHHHH----HHHSS--EEEEECCTTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHHH----HHcCC--CEEEECCCCCCHHHHH
Confidence 45556677776654333 33454 4788899999999664
No 281
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=28.90 E-value=15 Score=38.33 Aligned_cols=20 Identities=40% Similarity=0.486 Sum_probs=15.1
Q ss_pred hhccCCcceeeeccCCCCcceE
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.++|. .++..|+||||||+.
T Consensus 152 ~l~rk--~vlv~apTGSGKT~~ 171 (677)
T 3rc3_A 152 AMQRK--IIFHSGPTNSGKTYH 171 (677)
T ss_dssp TSCCE--EEEEECCTTSSHHHH
T ss_pred hcCCC--EEEEEcCCCCCHHHH
Confidence 34554 468899999999973
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=28.79 E-value=17 Score=30.90 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=12.6
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||..
T Consensus 27 ~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTL 41 (199)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 577889999999944
No 283
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=28.72 E-value=16 Score=31.79 Aligned_cols=16 Identities=38% Similarity=0.426 Sum_probs=13.1
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
.+-.|..|||||+.+.
T Consensus 8 ~l~tG~pGsGKT~~a~ 23 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMV 23 (199)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 5678999999998753
No 284
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=28.72 E-value=16 Score=30.38 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999954
No 285
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=28.53 E-value=24 Score=28.75 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=19.2
Q ss_pred HHHHhhc-cCCcceeeeccCCCCcceEe
Q psy5719 107 IVSDVLA-GYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 107 lv~~~l~-G~n~~i~ayG~tgSGKTyTm 133 (378)
++..++. .....|.-.|.+|+|||..+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444555 45667888999999999444
No 286
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=28.41 E-value=35 Score=37.83 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=25.5
Q ss_pred CCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 91 KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 91 ~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.+..-|.+.... ++.+.-.|....++..|+||||||..
T Consensus 603 ~~t~~Q~~ai~~----il~~~~~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 603 ETTPDQAQAINA----VLSDMCQPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp CCCHHHHHHHHH----HHHHHHSSSCCEEEEECCCCTTTHHH
T ss_pred CCCHHHHHHHHH----HHHHHhcCCcCcEEEECCCCCCHHHH
Confidence 344446555444 34445557766788999999999965
No 287
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=28.36 E-value=12 Score=32.07 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||.++
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999665
No 288
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.94 E-value=17 Score=29.76 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 467789999999943
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=27.79 E-value=17 Score=30.41 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=13.8
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...|.-.|..|||||+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 345777899999999543
No 290
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=27.75 E-value=25 Score=38.83 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.0
Q ss_pred HHHhhccCCcceeeeccCCCCcce
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTy 131 (378)
+..++.|.| ++..++||||||.
T Consensus 87 i~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 87 AKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHcCCC--EEEEeCCCCcHHH
Confidence 344567765 6788999999997
No 291
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=27.75 E-value=17 Score=30.22 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999944
No 292
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=27.43 E-value=17 Score=30.48 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=12.7
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999954
No 293
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=27.27 E-value=13 Score=32.35 Aligned_cols=15 Identities=20% Similarity=0.412 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999665
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=27.26 E-value=50 Score=32.22 Aligned_cols=18 Identities=39% Similarity=0.468 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
..|.-.|.+|+|||+|+.
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357778999999998773
No 295
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=27.21 E-value=20 Score=34.96 Aligned_cols=21 Identities=19% Similarity=0.218 Sum_probs=15.6
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++.|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 345555 567899999999773
No 296
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.77 E-value=21 Score=34.91 Aligned_cols=15 Identities=27% Similarity=0.166 Sum_probs=12.7
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.++..++||||||..
T Consensus 23 ~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 23 MTVLDLHPGSGKTRK 37 (459)
T ss_dssp EEEECCCTTSCTTTT
T ss_pred cEEEECCCCCCHHHH
Confidence 467789999999976
No 297
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=26.73 E-value=19 Score=30.17 Aligned_cols=19 Identities=26% Similarity=0.127 Sum_probs=14.5
Q ss_pred cCCcceeeeccCCCCcceE
Q psy5719 114 GYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyT 132 (378)
+....|.-.|.+|||||+.
T Consensus 6 ~~~~~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTV 24 (203)
T ss_dssp CCCEEEEEEECTTSCHHHH
T ss_pred cCceEEEEECCCCCCHHHH
Confidence 4455677889999999943
No 298
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=26.67 E-value=17 Score=37.69 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 94 ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 94 ~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.-|.+++... +.+|.| ++..|+||||||...
T Consensus 26 ~~Q~~~i~~~-------~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 26 PPQAEALKSG-------ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp HHHHHHHTTT-------GGGTCE--EEEECCGGGCHHHHH
T ss_pred HHHHHHHHHH-------hcCCCc--EEEEcCCccHHHHHH
Confidence 3466555431 344544 778999999999654
No 299
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=26.53 E-value=25 Score=38.77 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=16.1
Q ss_pred HhhccCCcceeeeccCCCCcceE
Q psy5719 110 DVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 110 ~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
.++.|.+ ++..|+||||||..
T Consensus 195 ~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 195 CIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHcCCC--EEEECCCCCChHHH
Confidence 3466655 68899999999965
No 300
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=26.39 E-value=18 Score=29.98 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.3
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTI 18 (184)
T ss_dssp SEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 477789999999943
No 301
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=26.39 E-value=19 Score=29.77 Aligned_cols=16 Identities=44% Similarity=0.576 Sum_probs=9.1
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 6 ~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 6 PIIWINGPFGVGKTHT 21 (183)
T ss_dssp CEEEEECCC----CHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578889999999954
No 302
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=26.37 E-value=18 Score=29.96 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=12.1
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999943
No 303
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=26.29 E-value=30 Score=32.46 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHhhc-cC--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |. ...+.-||.+|||||..+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 45777775 33 345788999999999654
No 304
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=26.23 E-value=20 Score=30.54 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|++|||||..
T Consensus 14 ~i~l~G~sGsGKsTl 28 (204)
T 2qor_A 14 PLVVCGPSGVGKGTL 28 (204)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999943
No 305
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=26.22 E-value=19 Score=37.33 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=22.7
Q ss_pred CCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 92 PNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 92 ~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
+..-|.+++..+ ++|.| ++..|+||||||...
T Consensus 26 l~~~Q~~~i~~i--------~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 26 LFPPQAEAVEKV--------FSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp CCCCCHHHHHHH--------TTCSC--EEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHH--------hCCCc--EEEEcCCccHHHHHH
Confidence 455687777653 35554 677899999999764
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=26.13 E-value=22 Score=29.47 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.6
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
...-+|.+|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999544
No 307
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=26.11 E-value=31 Score=32.00 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=20.3
Q ss_pred HHHHHhhcc-C--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAG-Y--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G-~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.| . ...+.-||.+|||||..+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 556777753 2 345788999999999554
No 308
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.08 E-value=27 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=14.2
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
....|.-.|.+|||||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455777899999999543
No 309
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=25.88 E-value=22 Score=29.06 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=11.8
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
..-+|++|||||.-+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 456899999999443
No 310
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=25.75 E-value=32 Score=32.41 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=19.8
Q ss_pred HHHHHhhcc---CCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAG---YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G---~n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++.| ....+.-+|.+|||||..+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 456777754 2345778999999999543
No 311
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.62 E-value=19 Score=29.69 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.0
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 366789999999943
No 312
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=25.43 E-value=15 Score=37.55 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.0
Q ss_pred cceeeeccCCCCcceEec
Q psy5719 117 GTIFAYGQTSSGKTHTME 134 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm~ 134 (378)
.-++..|.||||||+.+.
T Consensus 215 pHlLIaG~TGSGKS~~L~ 232 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVN 232 (574)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CeeEEECCCCCCHHHHHH
Confidence 457889999999998764
No 313
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=25.18 E-value=32 Score=31.65 Aligned_cols=28 Identities=36% Similarity=0.377 Sum_probs=20.2
Q ss_pred HHHHHhhc-cC--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA-GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~-G~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |. ...+.-||.+|||||...
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 55677774 33 345788999999999554
No 314
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=25.17 E-value=20 Score=29.16 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=11.6
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999943
No 315
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=24.96 E-value=28 Score=38.02 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=22.5
Q ss_pred cCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceE
Q psy5719 90 FKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 90 f~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyT 132 (378)
|.+..-|.+.+.. ++.|.+ ++..++||||||..
T Consensus 85 f~L~~~Q~eai~~--------l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 85 FTLDPFQDTAISC--------IDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp SCCCHHHHHHHHH--------HHHTCE--EEEECCTTSCHHHH
T ss_pred CCCCHHHHHHHHH--------HHcCCC--EEEECCCCCChHHH
Confidence 3455556665554 345655 77889999999965
No 316
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=24.92 E-value=20 Score=29.98 Aligned_cols=15 Identities=40% Similarity=0.569 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|..|||||+.
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577889999999943
No 317
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=24.84 E-value=21 Score=32.17 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=16.8
Q ss_pred ccCCcceeeeccCCCCcceEe
Q psy5719 113 AGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 113 ~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+...|+..|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 578888999999999999654
No 318
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=24.54 E-value=21 Score=30.26 Aligned_cols=16 Identities=38% Similarity=0.675 Sum_probs=13.2
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4678889999999954
No 319
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=24.52 E-value=21 Score=32.01 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=13.2
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578889999999954
No 320
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=24.25 E-value=42 Score=30.50 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.7
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999665
No 321
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=23.94 E-value=21 Score=32.63 Aligned_cols=17 Identities=18% Similarity=0.362 Sum_probs=14.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..++-+|..|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57889999999999765
No 322
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=23.82 E-value=22 Score=29.44 Aligned_cols=15 Identities=33% Similarity=0.598 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|..|||||+.
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999953
No 323
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.78 E-value=26 Score=38.48 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=13.3
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
.+...+||||||+|++
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 4567789999999984
No 324
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=23.52 E-value=22 Score=30.85 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|.+|||||+.
T Consensus 9 ~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTV 23 (227)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999953
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=23.48 E-value=22 Score=29.96 Aligned_cols=15 Identities=33% Similarity=0.594 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|+-.|..|||||+.
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477789999999954
No 326
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.38 E-value=18 Score=36.56 Aligned_cols=18 Identities=22% Similarity=0.239 Sum_probs=14.7
Q ss_pred CcceeeeccCCCCcceEe
Q psy5719 116 NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm 133 (378)
...++-+|++|+|||+.+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 446788999999999665
No 327
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.34 E-value=22 Score=37.20 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=16.5
Q ss_pred CcceeeeccCCCCcceEecc
Q psy5719 116 NGTIFAYGQTSSGKTHTMEG 135 (378)
Q Consensus 116 n~~i~ayG~tgSGKTyTm~G 135 (378)
++.++-.|..|||||+|+..
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ 43 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTH 43 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHHH
Confidence 45677889999999999854
No 328
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=23.31 E-value=22 Score=29.57 Aligned_cols=16 Identities=38% Similarity=0.553 Sum_probs=12.9
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 10 ~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 3577789999999953
No 329
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=23.14 E-value=22 Score=35.03 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=14.0
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 45889999999999643
No 330
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=23.10 E-value=23 Score=30.49 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=12.0
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|..|||||+
T Consensus 6 ~I~l~G~~GsGKsT 19 (220)
T 1aky_A 6 RMVLIGPPGAGKGT 19 (220)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47788999999994
No 331
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=23.09 E-value=26 Score=30.49 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=14.0
Q ss_pred HHHhhccCCcceeeeccCCCCcce
Q psy5719 108 VSDVLAGYNGTIFAYGQTSSGKTH 131 (378)
Q Consensus 108 v~~~l~G~n~~i~ayG~tgSGKTy 131 (378)
|........-..|-||..|||||.
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKTt 35 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKST 35 (195)
T ss_dssp -------CCEEEEEEECTTSCHHH
T ss_pred cccCCCCceEEEEEECCCCCcHHH
Confidence 333333344578999999999993
No 332
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=22.93 E-value=23 Score=31.15 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=14.5
Q ss_pred CCcceeeeccCCCCcceEe
Q psy5719 115 YNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 115 ~n~~i~ayG~tgSGKTyTm 133 (378)
+...|+-.|.||+|||...
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3445788899999998554
No 333
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=22.86 E-value=18 Score=33.88 Aligned_cols=16 Identities=25% Similarity=0.490 Sum_probs=13.1
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-.|++|+|||+|+
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999877
No 334
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=22.71 E-value=35 Score=34.74 Aligned_cols=39 Identities=23% Similarity=0.326 Sum_probs=24.0
Q ss_pred ecccccCCCCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 85 LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 85 ~FD~Vf~~~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.|+.+++ |..+.+ .+-..+-.|. .++-+|.+|+|||..+
T Consensus 39 ~l~~i~G----~~~~l~----~l~~~i~~g~--~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 39 LIDQVIG----QEHAVE----VIKTAANQKR--HVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHCCS----CHHHHH----HHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred ccceEEC----chhhHh----hccccccCCC--EEEEEeCCCCCHHHHH
Confidence 3466665 334433 3333344563 6778999999999765
No 335
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=22.68 E-value=18 Score=30.03 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=12.9
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
++.-.|+.|||||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556799999999765
No 336
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=22.63 E-value=26 Score=28.73 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=12.8
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|.-.|..|||||...
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5677899999999543
No 337
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=22.48 E-value=35 Score=31.54 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=19.9
Q ss_pred HHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
.+...+-.|..-.++-||+.|+|||.+.
T Consensus 8 ~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 8 TLKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 3344444566456888999999999665
No 338
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=22.41 E-value=27 Score=36.29 Aligned_cols=16 Identities=25% Similarity=0.289 Sum_probs=13.4
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++..++||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 4678999999999655
No 339
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=22.34 E-value=40 Score=31.81 Aligned_cols=28 Identities=36% Similarity=0.424 Sum_probs=19.3
Q ss_pred HHHHHhhc--cC--CcceeeeccCCCCcceEe
Q psy5719 106 SIVSDVLA--GY--NGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 106 ~lv~~~l~--G~--n~~i~ayG~tgSGKTyTm 133 (378)
+-++.++. |. ...+.-||.+|||||..+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 34555665 33 345788999999999654
No 340
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=22.09 E-value=25 Score=30.01 Aligned_cols=14 Identities=29% Similarity=0.423 Sum_probs=11.3
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 55679999999943
No 341
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=22.00 E-value=27 Score=32.95 Aligned_cols=14 Identities=50% Similarity=0.809 Sum_probs=12.3
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|+||||||.
T Consensus 7 ~i~i~GptGsGKTt 20 (323)
T 3crm_A 7 AIFLMGPTAAGKTD 20 (323)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57889999999994
No 342
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=21.97 E-value=27 Score=33.19 Aligned_cols=14 Identities=29% Similarity=0.546 Sum_probs=12.4
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|+||||||.
T Consensus 42 lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 42 LLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 67889999999993
No 343
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=21.97 E-value=34 Score=36.10 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=12.2
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.++..|+||||||.
T Consensus 111 ~vii~gpTGSGKTt 124 (773)
T 2xau_A 111 IMVFVGETGSGKTT 124 (773)
T ss_dssp EEEEECCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 46778999999997
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=21.89 E-value=30 Score=29.19 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=14.5
Q ss_pred cCCcceeeeccCCCCcceE
Q psy5719 114 GYNGTIFAYGQTSSGKTHT 132 (378)
Q Consensus 114 G~n~~i~ayG~tgSGKTyT 132 (378)
.....|+-.|..|||||+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3444688889999999943
No 345
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=21.79 E-value=19 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.9
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
.-++-.|.||||||..+
T Consensus 168 pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGV 184 (512)
T ss_dssp CSEEEECCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34688899999999765
No 346
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=21.78 E-value=19 Score=30.62 Aligned_cols=16 Identities=44% Similarity=0.360 Sum_probs=12.1
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.|--.|.+|||||..+
T Consensus 8 ~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 8 VIGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999654
No 347
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=21.69 E-value=25 Score=30.64 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.1
Q ss_pred cceeeeccCCCCcceE
Q psy5719 117 GTIFAYGQTSSGKTHT 132 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyT 132 (378)
..|+-.|..|||||+.
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4578899999999954
No 348
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=21.50 E-value=26 Score=30.48 Aligned_cols=12 Identities=25% Similarity=0.481 Sum_probs=10.7
Q ss_pred eeeeccCCCCcc
Q psy5719 119 IFAYGQTSSGKT 130 (378)
Q Consensus 119 i~ayG~tgSGKT 130 (378)
|+-.|++||||+
T Consensus 3 Iil~GpPGsGKg 14 (206)
T 3sr0_A 3 LVFLGPPGAGKG 14 (206)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 677899999998
No 349
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=21.34 E-value=28 Score=29.81 Aligned_cols=12 Identities=42% Similarity=0.659 Sum_probs=11.0
Q ss_pred eeeeccCCCCcc
Q psy5719 119 IFAYGQTSSGKT 130 (378)
Q Consensus 119 i~ayG~tgSGKT 130 (378)
++-+|.+|||||
T Consensus 2 ilV~Gg~~SGKS 13 (180)
T 1c9k_A 2 ILVTGGARSGKS 13 (180)
T ss_dssp EEEEECTTSSHH
T ss_pred EEEECCCCCcHH
Confidence 678999999999
No 350
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=21.15 E-value=48 Score=31.75 Aligned_cols=17 Identities=29% Similarity=0.225 Sum_probs=13.7
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..+.-+|++|||||..+
T Consensus 170 ~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46777999999999544
No 351
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.12 E-value=2.2e+02 Score=20.54 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=19.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhHhhhhhhHHHHhhhcc
Q psy5719 25 KDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEA 63 (378)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (378)
+.+|...+.++|..|.+. -..=..++.+++..+.+
T Consensus 35 Lr~kd~~I~eLEk~L~ek----d~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 35 LRQRDALIDELELELDQK----DELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcc
Confidence 344444566666666665 22233566777776643
No 352
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=21.09 E-value=27 Score=28.47 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=11.7
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|..|||||.
T Consensus 9 ~i~l~G~~GsGKST 22 (168)
T 1zuh_A 9 HLVLIGFMGSGKSS 22 (168)
T ss_dssp EEEEESCTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 46778999999994
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=20.95 E-value=21 Score=30.28 Aligned_cols=16 Identities=44% Similarity=0.422 Sum_probs=12.3
Q ss_pred eeeeccCCCCcceEec
Q psy5719 119 IFAYGQTSSGKTHTME 134 (378)
Q Consensus 119 i~ayG~tgSGKTyTm~ 134 (378)
|.-.|.+|||||..+.
T Consensus 7 i~i~G~sGsGKTTl~~ 22 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLME 22 (169)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5566899999996653
No 354
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=20.94 E-value=58 Score=26.61 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=18.2
Q ss_pred hhccCCcceeeeccCCCCcceEe
Q psy5719 111 VLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 111 ~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
++......|.-.|.+|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 56666778999999999999443
No 355
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=20.88 E-value=27 Score=28.88 Aligned_cols=14 Identities=43% Similarity=0.382 Sum_probs=11.3
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|.-.|..|||||+-
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999943
No 356
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=20.80 E-value=29 Score=32.62 Aligned_cols=14 Identities=57% Similarity=0.807 Sum_probs=11.9
Q ss_pred ceeeeccCCCCcce
Q psy5719 118 TIFAYGQTSSGKTH 131 (378)
Q Consensus 118 ~i~ayG~tgSGKTy 131 (378)
.|+-.|+||||||.
T Consensus 12 ~i~i~GptgsGKt~ 25 (316)
T 3foz_A 12 AIFLMGPTASGKTA 25 (316)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 46778999999994
No 357
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=20.78 E-value=27 Score=29.78 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=11.2
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|+-.|..|||||+.
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 55679999999943
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=20.54 E-value=27 Score=29.42 Aligned_cols=14 Identities=29% Similarity=0.332 Sum_probs=11.4
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|.-.|..|||||+.
T Consensus 4 i~i~G~~GsGKSTl 17 (204)
T 2if2_A 4 IGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 56689999999944
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=20.54 E-value=27 Score=30.72 Aligned_cols=13 Identities=46% Similarity=0.721 Sum_probs=11.5
Q ss_pred ceeeeccCCCCcc
Q psy5719 118 TIFAYGQTSSGKT 130 (378)
Q Consensus 118 ~i~ayG~tgSGKT 130 (378)
.|+-.|.+||||+
T Consensus 31 iI~llGpPGsGKg 43 (217)
T 3umf_A 31 VIFVLGGPGSGKG 43 (217)
T ss_dssp EEEEECCTTCCHH
T ss_pred EEEEECCCCCCHH
Confidence 4778899999998
No 360
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=20.50 E-value=28 Score=29.08 Aligned_cols=14 Identities=29% Similarity=0.584 Sum_probs=11.3
Q ss_pred eeeeccCCCCcceE
Q psy5719 119 IFAYGQTSSGKTHT 132 (378)
Q Consensus 119 i~ayG~tgSGKTyT 132 (378)
|.-.|..|||||+.
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 55679999999943
No 361
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=20.49 E-value=28 Score=29.26 Aligned_cols=15 Identities=33% Similarity=0.308 Sum_probs=12.5
Q ss_pred ceeeeccCCCCcceE
Q psy5719 118 TIFAYGQTSSGKTHT 132 (378)
Q Consensus 118 ~i~ayG~tgSGKTyT 132 (378)
.|.-.|..|||||..
T Consensus 6 ~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 577789999999954
No 362
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=20.42 E-value=29 Score=32.84 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=13.1
Q ss_pred ceeeeccCCCCcceEe
Q psy5719 118 TIFAYGQTSSGKTHTM 133 (378)
Q Consensus 118 ~i~ayG~tgSGKTyTm 133 (378)
.++-||++|+|||+-.
T Consensus 125 viLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEECSCSSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4577999999999654
No 363
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.14 E-value=29 Score=30.53 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=13.7
Q ss_pred cceeeeccCCCCcceEe
Q psy5719 117 GTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 117 ~~i~ayG~tgSGKTyTm 133 (378)
..|.-.|.+|||||..+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45777899999999654
No 364
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=20.14 E-value=22 Score=31.49 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=11.7
Q ss_pred eeeeccCCCCcceEe
Q psy5719 119 IFAYGQTSSGKTHTM 133 (378)
Q Consensus 119 i~ayG~tgSGKTyTm 133 (378)
+.-.|++|||||..+
T Consensus 34 ~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 34 VSIMGPSGSGKSTML 48 (235)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 455799999999554
No 365
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=20.09 E-value=31 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=21.1
Q ss_pred CCChHHHHHHHHHHHHHHhhccCCcceeeeccCCCCcceEe
Q psy5719 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133 (378)
Q Consensus 93 ~~~Q~~vf~~~~~~lv~~~l~G~n~~i~ayG~tgSGKTyTm 133 (378)
..-|.+++... +.+| ..++..|+||||||...
T Consensus 32 ~~~Q~~~i~~~-------~~~~--~~~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 32 NPPQTEAVKKG-------LLEG--NRLLLTSPTGSGKTLIA 63 (715)
T ss_dssp CHHHHHHHHTT-------TTTT--CCEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHH-------hcCC--CcEEEEcCCCCcHHHHH
Confidence 34566666542 2344 44678899999999765
Done!