RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5719
(378 letters)
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 222 bits (569), Expect = 3e-70
Identities = 91/163 (55%), Positives = 100/163 (61%), Gaps = 38/163 (23%)
Query: 80 KGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGD 139
GK + FD+VF PN TQE VY+ AK IV DVL GYNGTIF
Sbjct: 41 DGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIF------------------- 81
Query: 140 PNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMD 199
AYGQT SGKT+TMEG GDP +GIIPRIV+DIF HI MD
Sbjct: 82 -------------------AYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMD 122
Query: 200 ENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
ENLEF +KVSY EIYM+KIRDLLDVSK NL VHEDKNR +VK
Sbjct: 123 ENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVK 165
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 164 bits (417), Expect = 1e-47
Identities = 67/182 (36%), Positives = 86/182 (47%), Gaps = 44/182 (24%)
Query: 74 PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133
K + FDKVF A+QE V++E A +V VL GYN TIFAYGQT SGKT+TM
Sbjct: 38 SPKNRQGEKKFTFDKVFDATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTM 97
Query: 134 EGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFN 193
+G P+ GIIPR + D+F
Sbjct: 98 -----------------------------------------IGTPDSPGIIPRALKDLFE 116
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVAR-CTS 252
I + +E +F +KVSY EIY +KIRDLL+ S L + ED+ V VK L +S
Sbjct: 117 KIDKREEGWQFSVKVSYLEIYNEKIRDLLNPSSKKLEIREDEKGG--VYVKGLTEISVSS 174
Query: 253 ME 254
E
Sbjct: 175 FE 176
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 160 bits (407), Expect = 3e-46
Identities = 71/185 (38%), Positives = 89/185 (48%), Gaps = 48/185 (25%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
G+ K + FD+VF P ATQE VY+E AK +V VL GYN TIFAYGQT SGKT+TMEG
Sbjct: 37 GREKTFTFDRVFDPEATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPP 96
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
+ GIIPR + D+F I +
Sbjct: 97 EEEP---------------------------------------GIIPRALEDLFERIEER 117
Query: 199 -DENLEFIIKVSYFEIYMDKIRDLLDVSKVN--LSVHEDKNRVPFVKVKNLVARCTSMES 255
+ F ++VSY EIY +KI DLL S L + ED + V VK L T +E
Sbjct: 118 KERKWSFSVRVSYLEIYNEKIYDLLSPSSKKKKLRIREDPKK--GVYVKGL----TEVEV 171
Query: 256 SQAEE 260
+ AEE
Sbjct: 172 TSAEE 176
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 153 bits (390), Expect = 1e-43
Identities = 67/179 (37%), Positives = 82/179 (45%), Gaps = 47/179 (26%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD VF PN+TQE VY+ AK +V VL GYNGTIFAYGQT SGKT+TM
Sbjct: 47 FTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTM---------- 96
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDE-NL 202
G P GIIPR + D+FN I + E N
Sbjct: 97 -------------------------------FGSPKDPGIIPRALEDLFNLIDERKEKNK 125
Query: 203 EFIIKVSYFEIYMDKIRDLLD--VSKVNLSVHEDKNRVPFVKVKNL-VARCTSMESSQA 258
F + VSY EIY +K+ DLL LS+ ED + VK L S E + +
Sbjct: 126 SFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVY--VKGLTEVEVGSAEDALS 182
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 146 bits (371), Expect = 5e-41
Identities = 70/192 (36%), Positives = 88/192 (45%), Gaps = 47/192 (24%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD+VF +T +VY+ AK +V L GYNGTIFAYGQTSSGKT TM
Sbjct: 42 FTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTM---------- 91
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203
GD + GIIP V DIF I Q + E
Sbjct: 92 -------------------------------SGDEQEPGIIPLAVRDIFQRI-QDTPDRE 119
Query: 204 FIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNL-VARCTSMESSQAEEHK 262
F+++VSY EIY +KI+DLL S L + ED N+ V V L TS E +
Sbjct: 120 FLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKG--VVVAGLTEEIVTSPE--HLLQLI 175
Query: 263 KAIEYEKELGET 274
E + +GET
Sbjct: 176 ARGEKNRHVGET 187
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 130 bits (329), Expect = 1e-34
Identities = 55/168 (32%), Positives = 75/168 (44%), Gaps = 35/168 (20%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K Y FDKVF P A Q +VY + I+ +VL GYN TIFAYGQT +GKT+TMEG
Sbjct: 48 KTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDR---- 103
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
T GIIPR + +F + +
Sbjct: 104 --------------------------TDNKGSTWELSPHAGIIPRALYQLFEKLESQNT- 136
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVKVKNL 246
E+ +KVSY E+Y +++ DLL L + +D N V ++ L
Sbjct: 137 -EYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGL 183
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 127 bits (320), Expect = 2e-33
Identities = 52/166 (31%), Positives = 75/166 (45%), Gaps = 38/166 (22%)
Query: 74 PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133
P +G K + FD VF P+ +QE+VY+ +V + GYN T+ AYGQT SGKT+TM
Sbjct: 32 PQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTM 91
Query: 134 EGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFN 193
G T + GIIPR + IF
Sbjct: 92 --------------------------------GTAFT--ASEDEEE-VGIIPRAIQHIFK 116
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKN 236
I + + +F +KVS+ E+Y +++RDLL S K + + ED
Sbjct: 117 KIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSK 162
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 126 bits (319), Expect = 2e-33
Identities = 67/163 (41%), Positives = 89/163 (54%), Gaps = 42/163 (25%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
K + FD V+ PN+TQE VY+E A+ +V VL GYNGTIFAYGQT +GKT TMEGV P
Sbjct: 48 KVFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPPE 107
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
+GIIP+ FA+ IF HI + EN
Sbjct: 108 LRGIIPNS--------FAH------------------------------IFGHIAK-AEN 128
Query: 202 LEFIIKVSYFEIYMDKIRDLL--DVSKVNLSVHEDKNRVPFVK 242
++F+++VSY EIY +++RDLL D K L + E +R +VK
Sbjct: 129 VQFLVRVSYLEIYNEEVRDLLGKDQKK-KLELKERPDRGVYVK 170
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 120 bits (302), Expect = 6e-31
Identities = 60/182 (32%), Positives = 82/182 (45%), Gaps = 47/182 (25%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
K Y FD+VF +TQE+VY+ K +V VL GYN T+FAYG T +GKTHTM G
Sbjct: 51 NKELKYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDS 110
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
DP G++ + D+F+ I +
Sbjct: 111 DP-----------------------------------------GLMVLTMKDLFDKIEER 129
Query: 199 DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQA 258
++ EF + +SY EIY + IRDLL S L + ED N+ + V L T + A
Sbjct: 130 KDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQG--IVVAGL----TEHQPKSA 183
Query: 259 EE 260
EE
Sbjct: 184 EE 185
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 112 bits (283), Expect = 3e-28
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY-QMDENL 202
++ H GYN +FAYGQT SGK++TM MG ++GIIPR+ ++F I + ++NL
Sbjct: 79 ELLDHAFEGYNVCLFAYGQTGSGKSYTM---MGYKEEKGIIPRLCEELFQRIESKKEQNL 135
Query: 203 EFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVK 242
+ ++VSY EIY +K+RDLL+ K NL V E P+V+
Sbjct: 136 SYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVE 178
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 110 bits (278), Expect = 1e-27
Identities = 54/163 (33%), Positives = 70/163 (42%), Gaps = 48/163 (29%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
GK K + FD+VF P+A+QE V++E + + S
Sbjct: 42 GKKKSFSFDRVFDPDASQEDVFEEVSPLVQS----------------------------- 72
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
L GYN IFAYGQT SGKT+TME G P GIIPR + +FN +
Sbjct: 73 ----------ALDGYNVCIFAYGQTGSGKTYTME---GPPENPGIIPRALEQLFNTA-EE 118
Query: 199 DENL--EFIIKVSYFEIYMDKIRDLL---DVSKVNLSVHEDKN 236
+ + I S EIY + IRDLL K L + D
Sbjct: 119 LKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSK 161
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 112 bits (281), Expect = 4e-27
Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 54/216 (25%)
Query: 50 RKRYQYEVDRIKEAVR--QKNLARR--------GPAPQIGKGKFYLFDKVFKPNATQEKV 99
R + V IK +R L R + + K Y FDKVF P+ATQE V
Sbjct: 14 SSRNEKSVSDIKSTIRIIPGELGERLINTSKKSHVSLEKSKEGTYAFDKVFGPSATQEDV 73
Query: 100 YDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFA 159
Y+E K ++ +L GYN T+FAYGQT SGKT+TM G +P
Sbjct: 74 YEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEP------------------- 114
Query: 160 YGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIR 219
GIIP + ++F+ + + +F + +SY EIY +KI
Sbjct: 115 ----------------------GIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIY 152
Query: 220 DLLDVSKVNLSVHEDKNRVPFVKVKNL-VARCTSME 254
DLL ++ +L++ ED VKV L +S E
Sbjct: 153 DLLSPNEESLNIREDSLLG--VKVAGLTEKHVSSKE 186
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 104 bits (262), Expect = 2e-25
Identities = 57/157 (36%), Positives = 77/157 (49%), Gaps = 37/157 (23%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
+ + FD V N QE V+ K +V D L+GYNG+IFAYGQT SGKT+TM MG +
Sbjct: 41 RMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTM---MGPSS 97
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
PH QG+IPRI +F+ I + +E
Sbjct: 98 SDDESPH------------------------------GLQGVIPRIFEYLFSLIQREEEK 127
Query: 202 ----LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED 234
L+F+ K S+ EIY ++I DLLD + NL + ED
Sbjct: 128 RGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIRED 164
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 100 bits (251), Expect = 7e-24
Identities = 53/165 (32%), Positives = 73/165 (44%), Gaps = 46/165 (27%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD VF A+QE+VY+ AK +V L GYNGTIFAYGQT +GKT TM G
Sbjct: 50 FKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG-------- 100
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203
G S +G+IPR + +F + M
Sbjct: 101 -----------------GTESY-------------KDRGLIPRALEQVFREV-AMRATKT 129
Query: 204 FIIKVSYFEIYMDKIRDLLDVSKVNL------SVHEDKNRVPFVK 242
+ + VSY EIY +++ DLL + L ++ ED + VK
Sbjct: 130 YTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVK 174
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 99.5 bits (248), Expect = 1e-23
Identities = 55/193 (28%), Positives = 83/193 (43%), Gaps = 46/193 (23%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
Y FD + TQE ++ K I
Sbjct: 49 YQFDAFYGTECTQEDIFSREVKPI------------------------------------ 72
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203
+PH+L+G N T+FAYG T +GKTHTM +GDPN+ G+IPR ++D+ +
Sbjct: 73 --VPHLLSGQNATVFAYGSTGAGKTHTM---LGDPNEPGLIPRTLSDLLRMGRKQAWTGA 127
Query: 204 FIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKK 263
F +SY+EIY +K+ DLL+ +K L + EDK+ + SM + EE
Sbjct: 128 F--SMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSK-PIKSMA--EFEEAYI 182
Query: 264 AIEYEKELGETRL 276
+ + T+L
Sbjct: 183 PASKNRTVAATKL 195
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 99.4 bits (248), Expect = 2e-23
Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 59/183 (32%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ F KVF PN TQ++ ++ A +V D+L G N +F YG T+SGKT+TM+G GD
Sbjct: 57 FSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDG--- 113
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203
GI+PR ++ IFN I
Sbjct: 114 --------------------------------------GILPRSLDVIFNSIG------G 129
Query: 204 FIIKVSYFEIYMDKIRDLLDVS------KVNLSVHEDKNRVPFVKVKNLVARCTSMESSQ 257
+ + VSY EIY + I DLL+ S + +L + ED N +V T +E S
Sbjct: 130 YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVA------GLTEVEVSS 183
Query: 258 AEE 260
EE
Sbjct: 184 TEE 186
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 97.3 bits (243), Expect = 8e-23
Identities = 55/173 (31%), Positives = 76/173 (43%), Gaps = 47/173 (27%)
Query: 84 YLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 143
+ FD VF T E+VY K +
Sbjct: 53 FRFDYVFDEAVTNEEVYRSTVKPL------------------------------------ 76
Query: 144 GIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLE 203
IPHV G T FAYGQT SGKT+TM +GD N++G+ DIF + Q +++L
Sbjct: 77 --IPHVFEGGVATCFAYGQTGSGKTYTM---LGDENQEGLYALAARDIFRLLAQPNDDLG 131
Query: 204 FIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLV-ARCTSMES 255
+ VS+FEIY K+ DLL+ + LSV ED V++ L TS++
Sbjct: 132 --VTVSFFEIYGGKLFDLLN-DRKRLSVLEDGKGN--VQIVGLTEKPVTSVDE 179
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 75.0 bits (184), Expect = 1e-14
Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 36/159 (22%)
Query: 81 GKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDP 140
G+ + FD + P +TQE ++ +V + LAG+N ++FAYGQT SGKT+TM G
Sbjct: 131 GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWG----- 185
Query: 141 NKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ--- 197
G++ L+G ++QG+ PR+ +F I +
Sbjct: 186 PANGLLEEHLSG--------------------------DQQGLTPRVFERLFARINEEQI 219
Query: 198 --MDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHED 234
D L++ + S+ EIY ++I DLLD S+ NL + ED
Sbjct: 220 KHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIRED 258
Score = 31.8 bits (72), Expect = 0.77
Identities = 22/89 (24%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
E + L++ K + + R E V A E +LK AE+ V+ K + +++A E
Sbjct: 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAY 1231
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQ 370
+Q+D+L+ H+ +++ L +A+ +
Sbjct: 1232 ----KQIDKLKRKHENEISTLNQLVAESR 1256
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 70.3 bits (172), Expect = 3e-14
Identities = 26/47 (55%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDI 191
++ L GYN IFAYGQT SGKT+TMEG GIIPR V D+
Sbjct: 15 LLQSALDGYNVCIFAYGQTGSGKTYTMEGK---REGAGIIPRTVTDV 58
Score = 64.5 bits (157), Expect = 3e-12
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 99 VYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVL 150
V+ + ++ L GYN IFAYGQT SGKT+TMEG GIIP +
Sbjct: 8 VFRDVGP-LLQSALDGYNVCIFAYGQTGSGKTYTMEGK---REGAGIIPRTV 55
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 45.0 bits (107), Expect = 6e-05
Identities = 31/140 (22%), Positives = 58/140 (41%), Gaps = 3/140 (2%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ L + +E AE K E KEL E L ++ L +
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLR---DVHQKQ 358
LE V+ L E A+L +E E E+A E E ++++L + +++
Sbjct: 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEE 797
Query: 359 VAELRDEIADKQSMITELKE 378
+ LR+ + + ++ +T L E
Sbjct: 798 LKALREALDELRAELTLLNE 817
Score = 44.7 bits (106), Expect = 7e-05
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+V+ L R + E + E E+ L E L+ EA ++ L+ +++ + + ++
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 302 LEECVDALREECAKLK---AAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQ 358
L E +D LR E L A + S + + E+ E LE+Q+++L +
Sbjct: 801 LREALDELRAELTLLNEEAANLRERLESLERRIAATERRLED---LEEQIEELS----ED 853
Query: 359 VAELRDEIADKQSMITELKE 378
+ L EI + + +I EL+
Sbjct: 854 IESLAAEIEELEELIEELES 873
Score = 42.7 bits (101), Expect = 3e-04
Identities = 26/136 (19%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 243 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSL 302
+ N ++R + E +EL E+++ L E + E E K L
Sbjct: 293 LANEISRLEQQKQILRERLANLERQLEELEAQLE---ELESKLDELAEELAELEEKLEEL 349
Query: 303 EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAEL 362
+E +++L E +L+A + +E E+ E LE Q+ L ++ L
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLN----NEIERL 405
Query: 363 RDEIADKQSMITELKE 378
+ + L++
Sbjct: 406 EARLERLEDRRERLQQ 421
Score = 40.8 bits (96), Expect = 0.001
Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Query: 243 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSL 302
+++L A +E E + E L+ + ++ L E ++E E+K+ L
Sbjct: 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSEL 913
Query: 303 EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAEL 362
++ LRE+ A+L+ + V +E+ +E ++ + L + + E
Sbjct: 914 RRELEELREKLAQLELRLEGLEV---RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEA 970
Query: 363 RDEIADKQSMITEL 376
R + ++ I EL
Sbjct: 971 RRRLKRLENKIKEL 984
Score = 40.8 bits (96), Expect = 0.001
Identities = 27/142 (19%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ L ++ + E + +E R L E R+ + + +++ E +
Sbjct: 790 QIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEE 849
Query: 302 LEECVDALREECAKL-----KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ 356
L E +++L E +L + ++ A+ E+A +E ++ LE+ ++LR++
Sbjct: 850 LSEDIESLAAEIEELEELIEELESELEALL-NERASLEEALALLRSELEELSEELRELES 908
Query: 357 KQVAELRDEIADKQSMITELKE 378
K +ELR E+ + + + +L+
Sbjct: 909 K-RSELRRELEELREKLAQLEL 929
Score = 37.3 bits (87), Expect = 0.015
Identities = 29/128 (22%), Positives = 60/128 (46%), Gaps = 4/128 (3%)
Query: 251 TSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR 310
E E + E E++L E RL +S E ++ LQ+ + N+ LE+ LR
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308
Query: 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQ 370
E A L+ + +E + ++ E LE+++++L ++++ L E+ + +
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEEL----KEELESLEAELEELE 364
Query: 371 SMITELKE 378
+ + EL+
Sbjct: 365 AELEELES 372
Score = 35.8 bits (83), Expect = 0.043
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 14/133 (10%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
QAE+ ++ E + EL E L L R++ L+E ++E + + + EE ++ L E +L
Sbjct: 208 QAEKAERYKELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQEL 265
Query: 317 KAA--EQVTAVSSKEKAEE---------KEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365
+ E VS E+ E + + ++ + ++L ++ ++ EL +
Sbjct: 266 EEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQL-EELEAQ 324
Query: 366 IADKQSMITELKE 378
+ + +S + EL E
Sbjct: 325 LEELESKLDELAE 337
Score = 35.4 bits (82), Expect = 0.054
Identities = 30/146 (20%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Query: 241 VKVKNLVARCTSMESSQAEEHKKAIEY-------EKELGETRLLLSHHEARMKSLQESMK 293
++ NL + +E+ E K E E++L E + L EA ++ L+ ++
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368
Query: 294 EAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANE-VKVALEQQMDQLR 352
E E++ LEE ++ LR + A+L+ + E+ + + ++ + L+
Sbjct: 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLK 428
Query: 353 DVHQKQVAELRDEIADKQSMITELKE 378
+ + ++ EL+ E+ + + + EL+E
Sbjct: 429 KLEEAELKELQAELEELEEELEELQE 454
Score = 33.1 bits (76), Expect = 0.25
Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 11/127 (8%)
Query: 259 EEHKKAIEYEKELGETRLLLSHHEARMKSLQES-------MKEAENKKRSLEECVDALRE 311
E ++ E ++EL E L A ++ L+E + E E + L++ + AL
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
Query: 312 ECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
E ++L+ +Q+ + E+ LE ++D+L +++AEL +++ + +
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDEL----AEELAELEEKLEELKE 351
Query: 372 MITELKE 378
+ L+
Sbjct: 352 ELESLEA 358
Score = 29.3 bits (66), Expect = 4.8
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 272 GETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR-------EECAKLKAAEQVTA 324
+T + ++ L+E ++E E K LE+ + LR EE +L+ + +
Sbjct: 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELS 725
Query: 325 VSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
++ + LE+++ QL K++ EL EI + + + E +E
Sbjct: 726 RQISALRKDLARLEAEVEQLEERIAQL----SKELTELEAEIEELEERLEEAEE 775
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 43.9 bits (104), Expect = 1e-04
Identities = 39/177 (22%), Positives = 79/177 (44%), Gaps = 10/177 (5%)
Query: 212 EIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKEL 271
E ++++ + L+ + L E++ + L +E + ++ E E+EL
Sbjct: 743 EEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEEL 802
Query: 272 GETRLL-------LSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTA 324
E L E R + L++ ++E E + LEE +D L EE +L+ +
Sbjct: 803 EEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELK 862
Query: 325 VSSKEKAEEKEKANEVKVALEQQMDQLR---DVHQKQVAELRDEIADKQSMITELKE 378
+E EKE+ + LE++ ++L + ++AEL++EI + + EL+
Sbjct: 863 EELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEA 919
Score = 41.6 bits (98), Expect = 6e-04
Identities = 28/117 (23%), Positives = 61/117 (52%)
Query: 262 KKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQ 321
++ E ++EL E + + E + L+E ++E EN+ LEE ++ L+E+ LK +
Sbjct: 281 EELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELE 340
Query: 322 VTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+E + + E K LE+++ L + ++ LR+E+A+ ++ + E++
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397
Score = 41.6 bits (98), Expect = 7e-04
Identities = 34/172 (19%), Positives = 84/172 (48%), Gaps = 4/172 (2%)
Query: 207 KVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIE 266
++ E ++++R L+ + L + + +++ L +R +E E ++ E
Sbjct: 696 ELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEE 755
Query: 267 YEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVS 326
++ L E L E + L+E ++E E K+++L+E ++ L EE + +
Sbjct: 756 LQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERE 815
Query: 327 SKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ + +E+ + LE+++++L ++++ EL +E+ + + + ELKE
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEEL----EEKLDELEEELEELEKELEELKE 863
Score = 39.3 bits (92), Expect = 0.003
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ L + +E E ++ E EKE+ E + L ++ LQE + E + +
Sbjct: 240 ELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEE 299
Query: 302 LEECVDALREECAKLKAAEQVTA---VSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQ 358
LE + LRE +L+ + KEK E ++ E + L ++++QL ++
Sbjct: 300 LEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEA 359
Query: 359 VAELRDEIADKQSMITELKE 378
EL ++++ + EL E
Sbjct: 360 KEELEEKLSALLEELEELFE 379
Score = 39.3 bits (92), Expect = 0.003
Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 4/113 (3%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
E KEL E LS E ++ LQE ++EAE + L+ ++ LREE +L+
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+E E E LE ++++L ++++ EL+++I + + E +
Sbjct: 296 EIEELEGEISLLRERLEELENELEEL----EERLEELKEKIEALKEELEERET 344
Score = 38.5 bits (90), Expect = 0.005
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 241 VKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKR 300
++++L R +E E ++ E E++L E L E ++ L+E ++E E +K
Sbjct: 814 RELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKE 873
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360
LE+ + L EE +L+ + E EE EK E LE ++++L +
Sbjct: 874 ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEE 933
Query: 361 ELRDEIADKQSMITELKE 378
EL +E + ++ TEL+
Sbjct: 934 ELEEE--YEDTLETELER 949
Score = 36.2 bits (84), Expect = 0.028
Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 5/125 (4%)
Query: 256 SQAEEHKKAI-EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECA 314
+ +E ++ + E EKEL E + L EA + L++ +KE E +K LEE LRE +
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEE---ELRELES 898
Query: 315 KLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH-QKQVAELRDEIADKQSMI 373
+L ++ + E + K ++V L + ++L + + EL EI + I
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958
Query: 374 TELKE 378
L
Sbjct: 959 EALGP 963
Score = 35.8 bits (83), Expect = 0.041
Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 13/140 (9%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ L +E E +K ++EL E LL E + L+E+ +E E K +
Sbjct: 310 RLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSA 369
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL---RDVHQKQ 358
L E ++ L E + E E + L+++++ L + ++
Sbjct: 370 LLEELEELFEALRE----------ELAELEAELAEIRNELEELKREIESLEERLERLSER 419
Query: 359 VAELRDEIADKQSMITELKE 378
+ +L++E+ + ++ + EL+
Sbjct: 420 LEDLKEELKELEAELEELQT 439
Score = 35.5 bits (82), Expect = 0.056
Identities = 30/162 (18%), Positives = 72/162 (44%)
Query: 217 KIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRL 276
++ + L + L E++ + ++++L + E ++ E ++EL
Sbjct: 671 ELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEE 730
Query: 277 LLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEK 336
L ++R++ L+E ++E E + L+E ++ L EE L+ A +E E+++
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790
Query: 337 ANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
E LE+++++ EL ++ + E++E
Sbjct: 791 LQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEE 832
Score = 33.1 bits (76), Expect = 0.24
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 12/125 (9%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
QAE+ ++ E + EL E L L + +KE + LEE + L EE +L
Sbjct: 208 QAEKAERYQELKAELRELELALLLAK---------LKELRKELEELEEELSRLEEELEEL 258
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK---QVAELRDEIADKQSMI 373
+ + +E E E+ E L++++ +L++ ++ +++ LR+ + + ++ +
Sbjct: 259 QEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENEL 318
Query: 374 TELKE 378
EL+E
Sbjct: 319 EELEE 323
Score = 31.2 bits (71), Expect = 1.0
Identities = 20/120 (16%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAA----EQ 321
+Y++ E E +++ +E+++ E+ LE+ ++ L + K + +
Sbjct: 169 KYKERKEEA-------ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE 221
Query: 322 VTAVSSKEKAEEKEKANEVKVALEQQMDQLR---DVHQKQVAELRDEIADKQSMITELKE 378
+ + + ++ + LE+++ +L + Q+++ E EI + +S + EL+E
Sbjct: 222 LRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELRE 281
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 40.8 bits (96), Expect = 0.001
Identities = 39/147 (26%), Positives = 74/147 (50%), Gaps = 10/147 (6%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K+ L A S+E S AE+ ++ + E+ L + + A ++ L+ ++E ++
Sbjct: 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354
Query: 302 LEECVDALREECAKLKA-AEQV------TAVSSKEKAEEKEKANEVKVALEQQMDQLRDV 354
L E L+EE L+A E+V T K+ E+ EK L++++D+L++
Sbjct: 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEE 414
Query: 355 HQK---QVAELRDEIADKQSMITELKE 378
Q+ ++A+L IA ++ I EL+E
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEE 441
Score = 35.0 bits (81), Expect = 0.063
Identities = 28/157 (17%), Positives = 75/157 (47%), Gaps = 4/157 (2%)
Query: 222 LDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHH 281
D+ K+ ++++ + R+ ++ + A + +E + + E E++L L +
Sbjct: 772 EDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
E ++ LQE + + + +S+E+ ++ L + +L+ + + ++ + +
Sbjct: 832 EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKER 891
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
LE Q+ +L ++++ EL +I K+ ++ELK
Sbjct: 892 DELEAQLREL----ERKIEELEAQIEKKRKRLSELKA 924
Score = 33.1 bits (76), Expect = 0.29
Identities = 26/140 (18%), Positives = 58/140 (41%), Gaps = 19/140 (13%)
Query: 258 AEEHKKAIEYE---KELGETR--LLLSHHEARMKSLQESMKEAENKKRSLEEC---VDAL 309
E +KA Y+ KE E LL EA + + ++ + + LE+ + L
Sbjct: 204 RREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISEL 263
Query: 310 REECAKL-----KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH------QKQ 358
+ ++ + +++ + +E+ KEK E++ + + + +++
Sbjct: 264 EKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEER 323
Query: 359 VAELRDEIADKQSMITELKE 378
+A+L EI + I EL+
Sbjct: 324 LAKLEAEIDKLLAEIEELER 343
Score = 32.0 bits (73), Expect = 0.68
Identities = 22/138 (15%), Positives = 64/138 (46%), Gaps = 6/138 (4%)
Query: 241 VKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKR 300
+++N+ + +E+ E + + E+ L + LSH R+ +Q + + E +
Sbjct: 751 QEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHS--RIPEIQAELSKLEEEVS 808
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360
+E + + ++ +L ++ +E E++ E ++E++++ L +
Sbjct: 809 RIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL----NGKKE 864
Query: 361 ELRDEIADKQSMITELKE 378
EL +E+ + ++ + +L+
Sbjct: 865 ELEEELEELEAALRDLES 882
Score = 30.8 bits (70), Expect = 1.3
Identities = 20/132 (15%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 246 LVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEEC 305
L A ++ AE + +Y ++L + + ++ + + LQE ++ + L
Sbjct: 369 LRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
Query: 306 VDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365
+ + + +L+ ++ A+ K++ + E+ EQ++ L++ + + E
Sbjct: 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE----EYDRVEKE 484
Query: 366 IADKQSMITELK 377
++ Q + E +
Sbjct: 485 LSKLQRELAEAE 496
Score = 30.4 bits (69), Expect = 1.9
Identities = 24/137 (17%), Positives = 55/137 (40%), Gaps = 2/137 (1%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ L +S+E + E E + E L E + L+ + ++
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEAR--LSHSRIPE 795
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
++ + L EE ++++A + EKE + L++Q L++ + E
Sbjct: 796 IQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
Query: 362 LRDEIADKQSMITELKE 378
+ + K+ + EL+E
Sbjct: 856 IENLNGKKEELEEELEE 872
Score = 30.0 bits (68), Expect = 2.3
Identities = 32/113 (28%), Positives = 49/113 (43%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
E +KE ETR L + +++ L+ + E + + L+E + L EE A L AA
Sbjct: 375 EVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEA 434
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
E EEKE E +++QL K EL D + + EL +
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
Score = 29.7 bits (67), Expect = 3.4
Identities = 30/157 (19%), Positives = 69/157 (43%), Gaps = 28/157 (17%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAI-EYEKELGETRLLLSHHEARMKSLQESMKEAENKKR 300
+++NL + +E + EE + A+ + E LG + L+ ++E E K
Sbjct: 855 EIENLNGKKEELEE-ELEELEAALRDLESRLG-------DLKKERDELEAQLRELERKIE 906
Query: 301 SLEECVDALREECAKLKAA-----EQVTAVSSKEKAEEK--------EKANEVKVALEQQ 347
LE ++ R+ ++LKA E+++ + + +E+ E +E++
Sbjct: 907 ELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
Query: 348 MDQLRDVHQK------QVAELRDEIADKQSMITELKE 378
+ L V+ +V + DE+ +K++ + E ++
Sbjct: 967 IRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERK 1003
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 40.9 bits (95), Expect = 0.001
Identities = 37/121 (30%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
+AEE KKA E +K+ E + +A K +E+ K AE K E D K
Sbjct: 1310 KAEEAKKADEAKKKAEEAK---KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKA 1366
Query: 317 KAAEQVT------AVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQ 370
+AAE+ A ++K+KAEEK+KA+E K E+ + ++ + A+ + + A K+
Sbjct: 1367 EAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Query: 371 S 371
+
Sbjct: 1427 A 1427
Score = 40.1 bits (93), Expect = 0.002
Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 233 EDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESM 292
EDK + +K + +AEE KKA E +K+ E + EA+ K+ E
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK---KADEAKKKA--EEA 1456
Query: 293 KEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEE-KEKANEVKVALE--QQMD 349
K+AE K+ EE A + + AK KA E A +K+KAEE K+KA+E K A E ++ D
Sbjct: 1457 KKAEEAKKKAEE---AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD 1513
Query: 350 QLRDVHQKQVAE 361
+ + + + A+
Sbjct: 1514 EAKKAEEAKKAD 1525
Score = 39.4 bits (91), Expect = 0.004
Identities = 30/119 (25%), Positives = 60/119 (50%), Gaps = 6/119 (5%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
+A+E KKA E +K+ E + +A + K+AE K++ E +++ +L
Sbjct: 1498 KADEAKKAAEAKKKADEAK------KAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITE 375
K AE++ K+KAEE +KA E K ++ ++ + + ++ E+ +++ M E
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
Score = 38.6 bits (89), Expect = 0.006
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 234 DKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMK 293
+ + K K A+ + E +A+E KK E +K+ + L A K E+ K
Sbjct: 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE---LKKAAAAKKKADEAKK 1425
Query: 294 EAENKKRSLE---ECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347
+AE KK++ E + +A + + AK KA E A +K+KAEE +KA+E K E+
Sbjct: 1426 KAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA 1482
Score = 37.8 bits (87), Expect = 0.010
Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
A KKA E +K+ E + EA+ K+ E K+A+ K+ EE A + E AK
Sbjct: 1413 AAAAKKKADEAKKKAEEKK---KADEAKKKA--EEAKKADEAKKKAEE---AKKAEEAKK 1464
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADK 369
KA E A +K+KAEE +KA+E K E+ + + + A+ + + A K
Sbjct: 1465 KAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Score = 35.5 bits (81), Expect = 0.054
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 8/131 (6%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLL---LSHHEARMKSLQESMKEAENKKRSLEECVDAL 309
++ +AEE KKA E +K E ++ + K E K+AE ++ E AL
Sbjct: 1638 LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE---AL 1694
Query: 310 REECAKLKAAEQVTAVSSKE--KAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367
++E + K AE++ ++E KAEE +KA E ++ + + +K+ E + +
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
Query: 368 DKQSMITELKE 378
+K+ + KE
Sbjct: 1755 EKKKIAHLKKE 1765
Score = 34.7 bits (79), Expect = 0.090
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 233 EDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESM 292
E+K + K K A+ +AEE KKA E +K+ E + EA+ K+ E
Sbjct: 1428 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAK---KADEAKKKA--EEA 1482
Query: 293 KEAENKKRSLEEC---VDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMD 349
K+A+ K+ EE D ++ K A++ +KA+E +KA E K A D
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKA-----D 1537
Query: 350 QLRDVHQKQVAE 361
+ + +K+ A+
Sbjct: 1538 EAKKAEEKKKAD 1549
Score = 32.8 bits (74), Expect = 0.36
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 12/120 (10%)
Query: 248 ARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVD 307
A+ + +AEE KKA E EK+ E L K +E K+ +K+ EE
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEA---LKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Query: 308 ALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ--QMDQLRDVHQKQVAELRDE 365
A EE K+KA E + KE E+K+KA E K E+ ++ L+ +K+ E+R E
Sbjct: 1724 A--EEENKIKAEE-----AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
Score = 32.8 bits (74), Expect = 0.41
Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
E+ + E K E E+ E R A Q ++K E +K + + ++
Sbjct: 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKAD 1293
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK-QVAELRDEIADKQS 371
KA E+ A +K+KAEE +KA+E K E+ + +K + A+ E A ++
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEA 1352
Score = 32.4 bits (73), Expect = 0.45
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K+K A+ +AEE KKA E +K++ + L E + K+ + E ENK ++
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ--LKKKEAEEKKKAEELKKAEEENKIKA 1663
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
EE A + E K KA E A ++KA E K + +++ + +K+ E
Sbjct: 1664 AEE---AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEE 1720
Query: 362 LRDEIADKQSMITELKE 378
L+ + + E K+
Sbjct: 1721 LKKAEEENKIKAEEAKK 1737
Score = 31.3 bits (70), Expect = 1.00
Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 7/127 (5%)
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALRE 311
+M +AEE KKA E+ E + L E +MK+ E K+AE K EE A E
Sbjct: 1577 NMALRKAEEAKKA---EEARIEEVMKLYEEEKKMKA--EEAKKAEEAKIKAEELKKA--E 1629
Query: 312 ECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
E K + K+KAEE +KA E + + + +K+ E + D++
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Query: 372 MITELKE 378
LK+
Sbjct: 1690 AAEALKK 1696
Score = 31.3 bits (70), Expect = 1.1
Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 6/112 (5%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
E +AEE KKA E +K + E +EA+ + + E V L EE
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKK-----AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365
K+KA E A +K KAEE +KA E K +EQ + + +K+ EL+
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE-EKKKAEELKKA 1655
Score = 29.0 bits (64), Expect = 5.4
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
++ +AEE KKA E +K E +E+ KEAE K+ EE A ++E
Sbjct: 1707 LKKKEAEEKKKAEELKKA----------EEENKIKAEEAKKEAEEDKKKAEE---AKKDE 1753
Query: 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQ 370
K K A K + KEK ++ L+++ ++ R K++ ++ D A+
Sbjct: 1754 EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANII 1811
Score = 28.6 bits (63), Expect = 7.1
Identities = 35/123 (28%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 232 HEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQ-- 289
ED + VK K A+ + E+ +AEE + E K + +A +K+ +
Sbjct: 1220 AEDAKKAEAVK-KAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEAR 1278
Query: 290 --ESMKEAENKKRS--LEECVDALREECAKLKAAEQVTAVSSKEKAEE-KEKANEVKVAL 344
+ +K+AE KK++ ++ + + + AK KA E A +K+KAEE K+KA+ K
Sbjct: 1279 KADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKA 1338
Query: 345 EQQ 347
E+
Sbjct: 1339 EEA 1341
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 40.0 bits (94), Expect = 0.002
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 2/125 (1%)
Query: 256 SQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAK 315
+ EE ++ +E ++L E + E R + L+E + E E + LRE A+
Sbjct: 489 EEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAE 548
Query: 316 LKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK--QVAELRDEIADKQSMI 373
L+A + ++ E EE E+A E L ++ +L++ + ++ L IAD + I
Sbjct: 549 LEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEI 608
Query: 374 TELKE 378
L+E
Sbjct: 609 ERLRE 613
Score = 31.2 bits (71), Expect = 1.1
Identities = 36/162 (22%), Positives = 68/162 (41%), Gaps = 27/162 (16%)
Query: 244 KNLVARCTSMESSQAEEHKKAIEYEKE-------LGETRLLLSHHEAR----------MK 286
K+L R +ES AE ++ YE++ E +L HE R ++
Sbjct: 202 KDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
Query: 287 SLQESMKEAENKK-------RSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANE 339
L+E++ E E ++ R L E ++ L EE L A + ++ +E+ +
Sbjct: 262 DLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED 321
Query: 340 VKVALEQQMDQLR---DVHQKQVAELRDEIADKQSMITELKE 378
L ++++ R H ++ LR++ D + EL+E
Sbjct: 322 RDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELRE 363
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 39.3 bits (92), Expect = 0.004
Identities = 20/127 (15%), Positives = 60/127 (47%), Gaps = 5/127 (3%)
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALRE 311
S + Q + ++ ++ EL E + + +K + ++ +N+++SL++ ++
Sbjct: 618 SAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQQSLKDKLELAIA 677
Query: 312 ECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
E K +A Q+ + ++ K +++ + LE D R++ +++A+ + + +
Sbjct: 678 E-RKQQAETQLRQLDAQLKQLLEQQ----QAFLEALKDDFRELRTERLAKWQVVEGELDN 732
Query: 372 MITELKE 378
+ +L
Sbjct: 733 QLAQLSA 739
Score = 33.9 bits (78), Expect = 0.16
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEV- 340
R++ +E+++ A K++ EE + E + K AE + K+ + ++
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665
Query: 341 ---KVALEQQMDQLRDVHQKQVAELRDEI----ADKQSMITELKE 378
K LE + + + + Q+ +L ++ +Q+ + LK+
Sbjct: 666 QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKD 710
Score = 33.9 bits (78), Expect = 0.17
Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 271 LGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAA-EQVTAVSSKE 329
L R L EAR+ +L ++ + K E ++E+ + + A +E
Sbjct: 354 LPSIRSELEEVEARLDALTGKHQDVQRK---YERLKQKIKEQLERDLEKNNERLAAIREE 410
Query: 330 KAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
K +K E L+ QLR + E +E + + + LK
Sbjct: 411 KDRQKAAIEE---DLQALESQLRQQLEAGKLEFNEEEYELELRLGRLK 455
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 36.5 bits (85), Expect = 0.010
Identities = 20/98 (20%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 284 RMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK-- 341
R+ LQ+ + E + + L+E + L++E +LK + +E + ++
Sbjct: 67 RLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSAN 126
Query: 342 -VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ L+++ +LR +++AEL+ E ++ L+E
Sbjct: 127 AIELDEENRELR----EELAELKQENEALEAENERLQE 160
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.024
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 19/131 (14%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEEC---VDALREECAKLKAA--- 319
EY EL E LS E + ++E +KE E K+ LEE + L + +L+
Sbjct: 304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHEL 363
Query: 320 --------EQVTAVSSKEKAEEKEKAN----EVKVALEQQMDQLRDVHQKQVAELRDEIA 367
E++ + + EK E++ A E+ +++ + + + EL+ EI
Sbjct: 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITAR-IGELKKEIK 422
Query: 368 DKQSMITELKE 378
+ + I ELK+
Sbjct: 423 ELKKAIEELKK 433
Score = 34.7 bits (80), Expect = 0.086
Identities = 44/140 (31%), Positives = 77/140 (55%), Gaps = 7/140 (5%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKK 299
+V + +S EE +K + KEL E + + E ++SL+ S ++ E K
Sbjct: 202 LEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
Query: 300 RSLEECVDALREECAKLKAAEQVTAVSS-KEKAEEKEKANEVKVALEQQMDQLRDVHQKQ 358
R LEE ++ L++E +L+ E+V + KEKAEE K +E E+ +D+LR++ +K+
Sbjct: 262 RELEERIEELKKEIEELE--EKVKELKELKEKAEEYIKLSEFY---EEYLDELREI-EKR 315
Query: 359 VAELRDEIADKQSMITELKE 378
++ L +EI + I EL+E
Sbjct: 316 LSRLEEEINGIEERIKELEE 335
Score = 29.3 bits (66), Expect = 4.8
Identities = 27/141 (19%), Positives = 59/141 (41%), Gaps = 10/141 (7%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSL-----QESMKE 294
++++K+ E + ++ + +EL ET L ++ L +E +E
Sbjct: 604 YLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEE 663
Query: 295 AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDV 354
+ L + LR E +L+ + + ++ EE E+ + K LE+ L V
Sbjct: 664 LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
Query: 355 HQKQVAELRDEIADKQSMITE 375
ELR+++ ++++ E
Sbjct: 724 E-----ELREKVKKYKALLKE 739
Score = 28.5 bits (64), Expect = 8.1
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 259 EEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKA 318
EEH+K + L E L E +K ++E ++ + R LE+ + E +
Sbjct: 447 EEHRKEL-----LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKEL 501
Query: 319 AEQVTAVSSKEK---AEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITE 375
AEQ+ + K K EE EK E L++++ +L+ ++ L+ E+ + + +
Sbjct: 502 AEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLK----GEIKSLKKELEKLEELKKK 557
Query: 376 LKE 378
L E
Sbjct: 558 LAE 560
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 35.0 bits (81), Expect = 0.044
Identities = 25/117 (21%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
E K L + + L +++L+ +++ EN+ LE + +RE + + E+++AV
Sbjct: 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE--EKLSAV 85
Query: 326 SSKEKAE----EKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ + E + A E +LE ++ +L + ++ +L EI D + + L++
Sbjct: 86 KDERELRALNIEIQIAKERINSLEDELAELME----EIEKLEKEIEDLKERLERLEK 138
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 34.1 bits (79), Expect = 0.063
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 20/100 (20%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
ESS A +KA++ E+ E L++ +K+ E +K LE+ V L +
Sbjct: 105 ESSVAFGMRKALQAEQGKSE--------------LEQEIKKLEEEKEELEKRVAELEAKL 150
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRD 353
++ E+ + + EEK A+E+ L++Q QL+
Sbjct: 151 EAIEKREE-----EERQIEEKRHADEIA-FLKKQNQQLKS 184
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 33.2 bits (76), Expect = 0.11
Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 235 KNRVPFVKVKNLVARCTSMESSQAEE---HKKAIEYEKELGETRLLLSHHEARMKSLQES 291
K V V+ + L + + + ++ + E+ + E L + ++ L+E
Sbjct: 63 KAPVQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLREL 122
Query: 292 MKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL 351
+K E + SLEE + L +E +L Q +E EE E+ E L++ + +L
Sbjct: 123 LKSLEERLESLEESIKELAKELREL---RQDLREEVEELREELERLQENLQRLQEAIQEL 179
Query: 352 RDVHQKQ 358
+ + ++
Sbjct: 180 QSLLEQL 186
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 34.1 bits (78), Expect = 0.12
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 14/125 (11%)
Query: 266 EYEKELGETRLLLSHH---------EARMKSLQESMKEAENKKRSLEECVDALREE---C 313
+ ELGE L L ++ +E + E +K E VD+L++
Sbjct: 116 QLCNELGEPPLSLLRKDADPLSLPNLEELEHFRERLGELREEKVRRLEEVDSLKQSIKSL 175
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALE--QQMDQLRDVHQKQVAELRDEIADKQS 371
L ++ E N+ V E ++D++ + Q + D+I D +
Sbjct: 176 CSLLGTPPARTDFEQDVLSYGEIPNDHCVTRETIDKLDKMLENLAAQKKQRADKIDDLRE 235
Query: 372 MITEL 376
I EL
Sbjct: 236 QIQEL 240
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 34.2 bits (78), Expect = 0.15
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 1/118 (0%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
E A+ K+ E EKE L + L+ + + E +K EE + +E
Sbjct: 265 EEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEL 324
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
KL+ + +E +E ++ + A E++ +QL + +K +L +E+ K+
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL-EQLEEELLAKKK 381
Score = 29.6 bits (66), Expect = 3.2
Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 258 AEEHKKAIEYEKELGETR------LLLSHHEARMKSLQESMKEAENKKRSLEECVDALRE 311
E+ KKA+EY + + L L + + + + + +++ +E L +
Sbjct: 204 KEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEK 263
Query: 312 ECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
E L + KEK ++E+ + E+ +L + +++V + ++
Sbjct: 264 EEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 323
Query: 372 MITELKE 378
+ KE
Sbjct: 324 LKKLEKE 330
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 33.2 bits (76), Expect = 0.16
Identities = 26/126 (20%), Positives = 60/126 (47%), Gaps = 4/126 (3%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
E Q E ++ + E+++ + L +E L+E +K+ E + + LE+ D L EE
Sbjct: 3 AEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEE 62
Query: 313 CAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSM 372
+L+ E + +E+ E + +VA ++++ R+ + + +L+ E+ + Q
Sbjct: 63 NRRLE-EEAAASEEERERLEAEVDEATAEVA---KLEEEREKKEAETRQLQQELREAQEA 118
Query: 373 ITELKE 378
++
Sbjct: 119 HERARQ 124
Score = 33.2 bits (76), Expect = 0.16
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
E E+E E + E M+ Q+ ++E E LEE + EE L+
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
++ EE + E + LE ++D+ +VA+L +E K++ +L++
Sbjct: 62 ENRRLEEEAAASEEERERLEAEVDEA----TAEVAKLEEEREKKEAETRQLQQ 110
>gnl|CDD|240609 cd12796, LbR_Ice_bind, Ice-binding protein, left-handed beta-roll.
The ice-binding protein of the grass Lolium perenne
(LpIBP) discourages the recrystallization of ice.
Ice-binding proteins produced by organisms to prevent
the growing of ice are termed to anti-freeze proteins.
LpIBP consists of an unusual left-handed beta roll.
Ice-binding is mediated by a flat beta-sheet on one side
of the helix.
Length = 114
Score = 31.6 bits (72), Expect = 0.18
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 110 DVLAGYNGTIFAYGQTSSGKTHTMEG----VMGDPNKQGIIP---HVLAGYNGTIFAYGQ 162
+VL+G N T+ +G + + G V G N + + ++G N T+
Sbjct: 41 NVLSGNNNTVSGNNHVVTGSNNVVTGNGNTVSGSNNV---VSGSNNTVSGGNNTVSGSNN 97
Query: 163 TSSGKTHTMEGVMGDPNKQ 181
T SG H V G+ NK
Sbjct: 98 TVSGSNH---IVSGN-NKV 112
>gnl|CDD|219176 pfam06785, UPF0242, Uncharacterized protein family (UPF0242).
Length = 401
Score = 33.3 bits (76), Expect = 0.21
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 250 CTSMESSQAEEHKKAIEYEK---ELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECV 306
S+E Q E + ++ +K +LG R + + R + L+E + + + + L+ +
Sbjct: 91 RESIEERQKESDQLKLQNQKLVNQLGHARGVFIKTKGRYQKLEELSRHLKEENQCLQIQL 150
Query: 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKAN-EVKVALEQQMDQLRDVHQKQVAELRDE 365
DAL +EC EK EE ++ N E+ L Q +L D +Q E +
Sbjct: 151 DALVQEC--------------NEKIEENQELNRELAETLAYQ-QELNDEYQATFVEQHNM 195
Query: 366 IADKQSMITELK 377
+ +Q+ I +L+
Sbjct: 196 LDKRQAYIGKLE 207
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 32.7 bits (74), Expect = 0.30
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 7/119 (5%)
Query: 265 IEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR----EECAKLKAAE 320
+ + + L H + + L+E KEA++ S+ +AL E ++ E
Sbjct: 167 SDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELE 226
Query: 321 QVTAVSSKEKAEEK---EKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITEL 376
Q +++K E E +++ LE+ +L+ +K + RDE ++ + E
Sbjct: 227 QDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLEN 285
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 32.8 bits (75), Expect = 0.31
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 251 TSMESSQAEEHKKA----IEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECV 306
T++ S Q + K E +K L + LS + +++ L+ + +N+ S E
Sbjct: 188 TTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAA 247
Query: 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ 346
RE A +AA + +A E ++ E
Sbjct: 248 AKAREAAAAAEAAAA------RARAAEAKRTGETYKPTAP 281
Score = 31.2 bits (71), Expect = 0.99
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 291 SMKEAENKKRS---LEECVDALREECAKLKA-AEQVTAVSSKEKAEEKEKANEVKVALEQ 346
S ++A+ R A E LKA +Q+ AV ++ AE+ E + Q
Sbjct: 138 SPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQ 197
Query: 347 Q--MDQLRDVHQKQVAELRDEIADKQSMITELK 377
Q + QL + +K +A+L E++ Q + EL+
Sbjct: 198 QAKLAQLLEERKKTLAQLNSELSADQKKLEELR 230
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 33.0 bits (76), Expect = 0.32
Identities = 24/110 (21%), Positives = 44/110 (40%), Gaps = 11/110 (10%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSL---QESMKEAENKKRSLEECVDALR 310
A E + +E +EL E S E ++ ++ A ++ +E L
Sbjct: 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE 358
Query: 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMD----QLRDVHQ 356
E +L+ +V +E E++E+ A E+++D QL D Q
Sbjct: 359 ELEERLEEQNEV----VEEADEQQEENEARAEAAEEEVDELKSQLADYQQ 404
Score = 32.2 bits (74), Expect = 0.56
Identities = 34/146 (23%), Positives = 62/146 (42%), Gaps = 22/146 (15%)
Query: 229 LSVHEDKNRVPFVKVKNLVARCT-SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKS 287
LSV + + F + LV + + S+A A E + L E R H +++
Sbjct: 465 LSVAQAAHSQ-FEQAYQLVRKIAGEVSRSEA--WDVARELLRRLREQR----HLAEQLQQ 517
Query: 288 LQESMKEAENKKRSLEECVDALREECAKLK----AAEQVTAVSSKEKA------EEKEKA 337
L+ + E E + R + L E C +L +++ + + +A E +A
Sbjct: 518 LRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEA 577
Query: 338 NEVKVALEQQMDQLRDVHQKQVAELR 363
E ++AL QQ++QL Q ++ L
Sbjct: 578 RERRMALRQQLEQL----QARIQRLA 599
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.9 bits (75), Expect = 0.36
Identities = 29/135 (21%), Positives = 53/135 (39%), Gaps = 13/135 (9%)
Query: 246 LVARCTSMESSQAEEHKKAIE--------YEKELGETRLLLSHHEARMKSLQESMKEAEN 297
++ + + EE IE E++ LL E K L++ M+E +
Sbjct: 498 IIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557
Query: 298 KKRSLEECVDALREECAKLKAAEQVTA---VSSKEKAEEKEKANEVKVALEQQMDQLRDV 354
++R+ + + +E LKA ++ KEK K K + L + + + +
Sbjct: 558 RERNKKL--ELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKI 615
Query: 355 HQKQVAELRDEIADK 369
QK D+I DK
Sbjct: 616 PQKPTNFQADKIGDK 630
Score = 30.2 bits (68), Expect = 2.5
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 20/94 (21%)
Query: 285 MKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVAL 344
++ L KE E K LE+ L +E KLK + +E E KE+ K+ L
Sbjct: 517 IEKLSALEKELEQKNEHLEK----LLKEQEKLKKELE------QEMEELKERERNKKLEL 566
Query: 345 EQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
E++ Q+ + L+ E+ I ELKE
Sbjct: 567 EKE-------AQEALKALKKEVESI---IRELKE 590
>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional.
Length = 175
Score = 31.3 bits (71), Expect = 0.46
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 277 LLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKE-----KA 331
+LS E R K +Q S+ A + K E + RE AK A KE +A
Sbjct: 43 ILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAEKLRA 102
Query: 332 EEKEKAN-EVKVALEQQMDQLRDVHQKQVAELRDEIAD 368
E EKA+ E K + +++ ++ + LR+E+AD
Sbjct: 103 EITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVAD 140
>gnl|CDD|220381 pfam09753, Use1, Membrane fusion protein Use1. This entry is of a
family of proteins all approximately 300 residues in
length. The proteins have a single C-terminal
trans-membrane domain and a SNARE [soluble NSF
(N-ethylmaleimide-sensitive fusion protein) attachment
protein receptor] domain of approximately 60 residues.
The SNARE domains are essential for membrane fusion and
are conserved from yeasts to humans. Use1 is one of the
three protein subunits that make up the SNARE complex
and it is specifically required for Golgi-endoplasmic
reticulum retrograde transport.
Length = 251
Score = 31.7 bits (72), Expect = 0.46
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 26/135 (19%)
Query: 241 VKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKE--AENK 298
+ + L++RC ++ + E+ E RL E +K+L+E ++E
Sbjct: 5 INFRRLLSRCEALAKEKREQ-----------NEWRL-----EKYVKALREMLEELKKSLS 48
Query: 299 KRSLEECVDALREECAKLK---AAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH 355
K S + + R LK AE+ ++ S K A +K E + +++H
Sbjct: 49 KPS-VDVLTEYRRRVDFLKGLLEAEKPSSPSEKALANQKLSRGRAPTVDEPRSPASKEIH 107
Query: 356 QKQVA----ELRDEI 366
Q+ + ELR E+
Sbjct: 108 QQTKSRYTSELRKEL 122
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 31.9 bits (73), Expect = 0.53
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 22/120 (18%)
Query: 251 TSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR 310
T+ E + E KA E E R E M E ++RS +E V L
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMM----------EAQERSYQEHVKQLI 249
Query: 311 EECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQ 370
E K++A ++ E+E+ E K L++Q + L++ + + L+ EI D +
Sbjct: 250 E---KMEAER-------EKLLAEQERMLEHK--LQEQEELLKEGFKTEAESLQKEIQDLK 297
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 32.0 bits (73), Expect = 0.57
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETR-LLLSHHEARMKSLQESMKEAENKKR 300
K+K+L R +E E+ +K +EL E + L E R+K L+E ++E E +
Sbjct: 323 KLKSLEERLEKLE----EKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELE 378
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360
E + L E +LK + + +E EE E+ + LE+++++L + K++
Sbjct: 379 KALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEI-KKLE 437
Query: 361 ELRDEIADKQSMITELKE 378
E +++ K+ MI EL
Sbjct: 438 EQINQLESKELMIAELAG 455
Score = 30.5 bits (69), Expect = 1.7
Identities = 28/127 (22%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
+ + + ++ KEL E LL + ++ L+E +KE + K + LEE + L E
Sbjct: 556 QLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEEL 615
Query: 313 CAKLKAAEQVTAVSSKEK-AEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQS 371
L+ +E + E+ E + + ++ LE+ + + +++V EL EI +
Sbjct: 616 LQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQ 675
Query: 372 MITELKE 378
I ++
Sbjct: 676 RIENEEQ 682
Score = 29.7 bits (67), Expect = 3.1
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 23/135 (17%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
+ + EE ++ IE +E +++L E ++E K +SLEE ++ L E+
Sbjct: 289 KIERLEELEREIEELEEE----------LEGLRALLEELEELLEKLKSLEERLEKLEEKL 338
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL----------RDVHQKQVAELR 363
KL++ + A E A+ E E LE+++++L ++ + EL+
Sbjct: 339 EKLESELEELAEEKNELAKLLE---ERLKELEERLEELEKELEKALERLKQLEEAIQELK 395
Query: 364 DEIADKQSMITELKE 378
+E+A+ + + E++E
Sbjct: 396 EELAELSAALEEIQE 410
Score = 29.0 bits (65), Expect = 5.4
Identities = 27/131 (20%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
SQ EE +++E + E E+ ++ L + E + +LEE ++ EE
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEE-LEEKVEEL 666
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK------QVAELRDEIA 367
E + ++ E+ E+ +++ LEQ ++L ++ +K + EL A
Sbjct: 667 EAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKA 726
Query: 368 DKQSMITELKE 378
+ + + EL++
Sbjct: 727 ELEELKKELEK 737
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 31.8 bits (73), Expect = 0.67
Identities = 26/126 (20%), Positives = 43/126 (34%), Gaps = 24/126 (19%)
Query: 262 KKAIEYEKELGETRLLLSHHEARMKSLQESMK---EAENKKRSLEECVDALREECAKLKA 318
+ A+EY +E E +K + +K E K L E + L +E +LK
Sbjct: 704 EAALEYLQE----------QEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKK 753
Query: 319 AEQVTAVSSKEKAEEKEKANEVKV-----------ALEQQMDQLRDVHQKQVAELRDEIA 367
++ + E+ VKV L + D L+ V L
Sbjct: 754 KLAAAELADLLSNAKAEEIGGVKVLAKEVDGADMKELREIADDLKKKLGSAVIVLASVAD 813
Query: 368 DKQSMI 373
K S++
Sbjct: 814 GKVSLV 819
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 31.4 bits (72), Expect = 0.81
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKV 342
++K + +E +LE+ V L+ E L+AAE ++A K+ A+E EK
Sbjct: 328 DKIKEELAQLDNSEESLEALEKEVKKLKAEL--LEAAEALSA-IRKKAAKELEK------ 378
Query: 343 ALEQQMDQL 351
+ ++ L
Sbjct: 379 EVTAELKAL 387
>gnl|CDD|180941 PRK07352, PRK07352, F0F1 ATP synthase subunit B; Validated.
Length = 174
Score = 30.7 bits (70), Expect = 0.85
Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 8/97 (8%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
E R +++ +++KEAE + R + AL E KL A+Q + + +A+ K +A ++
Sbjct: 49 EERREAILQALKEAEERLRQAAQ---ALAEAQQKLAQAQQ---EAERIRADAKARAEAIR 102
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+E+Q + D+ + + D A+++ +I +L+
Sbjct: 103 AEIEKQ--AIEDMARLKQTAAADLSAEQERVIAQLRR 137
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 31.3 bits (70), Expect = 0.87
Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVD----ALREECAKLKAAEQVTAVSSKEKAEEKEKA 337
+A L + E +RS+E V+ A R ++L+A ++ A +KE EE+E A
Sbjct: 410 QAERAELDAAWARVEEGRRSVEAMVEAGRKAHRRHTSELEARKKDLAEIAKEVEEEREAA 469
Query: 338 NEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMI 373
L + D LR + + AEL ++ Q ++
Sbjct: 470 LIATTVLNEAQDDLRLQYGSRAAELEKKLDAAQGVL 505
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 31.6 bits (72), Expect = 0.87
Identities = 28/116 (24%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 262 KKAIEYEKELGETRLLLSH--HEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAA 319
K+ E E+EL E +S E ++ L E + EA+N+ E ++ L + LK A
Sbjct: 398 KELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEA 457
Query: 320 EQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK-QVAELRDEIADKQSMIT 374
+ + EK ++K A E++ A+ D+ + ++ + L ++ + IT
Sbjct: 458 IEALRKTLDEKTKQKINAFELERAI-TIADKAKKTLKEFREKLLERKLQQLEEEIT 512
Score = 30.4 bits (69), Expect = 1.8
Identities = 25/132 (18%), Positives = 45/132 (34%), Gaps = 20/132 (15%)
Query: 261 HKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAE 320
+ E EL E + L+ ++EA+ SLE R E L E
Sbjct: 208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE---KKFRSEGGDL-FEE 263
Query: 321 QVTAVSSKEKAEEKEKANEVKVA---------------LEQQMDQLRDVHQ-KQVAELRD 364
+ ++ E KAN ++ L+ QL+ Q +Q ++
Sbjct: 264 REQLERQLKEIEAARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQE 323
Query: 365 EIADKQSMITEL 376
E+ ++ + E
Sbjct: 324 ELEERDKELLES 335
>gnl|CDD|213867 TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor
FlgM. FlgM interacts with and inhibits the alternative
sigma factor sigma(28) FliA. The C-terminus of FlgM
contains the sigma(28)-binding domain.
Length = 96
Score = 29.2 bits (66), Expect = 0.92
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIAD 368
AK AA Q A SS + A +++ +LE + DV ++VAE++ IA+
Sbjct: 24 AKASAAAQAAAASSGDSVSLSSLAQQLQ-SLEAALASSPDVDAEKVAEIKAAIAN 77
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.3 bits (72), Expect = 0.95
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 9/109 (8%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENK-KR 300
K+ L+A S+E + E +KA E E L E L E + + LQE + + ++
Sbjct: 517 KLNELIA---SLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Query: 301 SLEECVDALREECAK----LKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
++ + ++E + L+ ++ S K E E + A E
Sbjct: 574 EAQQAIKEAKKEADEIIKELRQLQKGGYASVKAH-ELIEARKRLNKANE 621
Score = 30.2 bits (69), Expect = 2.1
Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKA-AEQVTAVSSKEKAEEKEKANEV 340
E + + + +KEAE K LEE + L+EE KL AE+ K +KE +
Sbjct: 533 EQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK--EAQQAIKEAKKEADEII 590
Query: 341 KVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
K + Q V ++ E R + + K
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK 627
Score = 29.0 bits (66), Expect = 4.4
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 17/82 (20%)
Query: 287 SLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ 346
SL+E +E E K E LK AE K K E +EK +++ ++
Sbjct: 524 SLEELERELEQKAEEAEA----------LLKEAE-------KLKEELEEKKEKLQEEEDK 566
Query: 347 QMDQLRDVHQKQVAELRDEIAD 368
+++ Q+ + E + E +
Sbjct: 567 LLEEAEKEAQQAIKEAKKEADE 588
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.3 bits (72), Expect = 1.0
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 15/122 (12%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
+ E HK E+EKEL E R L E R+ +E++ EE ++ +E +
Sbjct: 63 KEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQK 122
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITEL 376
+++ E+KE+ E++ +E+Q+ +L + E ++ + +K + E
Sbjct: 123 -----------QQELEKKEE--ELEELIEEQLQELERISGLTAEEAKEILLEK--VEEEA 167
Query: 377 KE 378
+
Sbjct: 168 RH 169
Score = 30.1 bits (69), Expect = 2.2
Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 11/117 (9%)
Query: 269 KELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSK 328
K++ E ++ + EA+ + L+E+ KEAE K+ E + +EE KL+ + +
Sbjct: 26 KKIAEAKIKEAEEEAK-RILEEAKKEAEAIKK---EALLEAKEEIHKLRNEFEKELRERR 81
Query: 329 EKAEEKEKANEVKV-ALEQQMDQLR------DVHQKQVAELRDEIADKQSMITELKE 378
+ ++ EK K L+++++ L + +K++ + + E+ K+ + EL E
Sbjct: 82 NELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIE 138
>gnl|CDD|191413 pfam05970, PIF1, PIF1-like helicase. This family includes
homologues of the PIF1 helicase, which inhibits
telomerase activity and is cell cycle regulated. This
family includes a large number of largely
uncharacterized plant proteins. This family includes a
P-loop motif that is involved in nucleotide binding.
Length = 364
Score = 30.8 bits (70), Expect = 1.2
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 93 NATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKT 130
N Q+ V+D+ I+ V G F YG +GKT
Sbjct: 3 NDEQKSVFDQ----IIESVDNNLGGVFFVYGYGGTGKT 36
>gnl|CDD|179334 PRK01770, PRK01770, sec-independent translocase; Provisional.
Length = 171
Score = 30.2 bits (68), Expect = 1.2
Identities = 18/83 (21%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 281 HEARMKSLQESMKEAENKKRSLEECVDALREECAKLK-AAEQVTAVSSKEKAEE-KEKAN 338
E +++ LQ+S+K+ E K SL L+ +LK AAE + + E+ ++A+
Sbjct: 52 QELKLQELQDSLKKVE--KASLTNLSPELKASVDELKQAAESMKRSYAANDPEKASDEAH 109
Query: 339 EVKVALEQQMDQLRDVHQKQVAE 361
+ + + + + A+
Sbjct: 110 TIHNPVVKDNEAAHEGVTPAAAQ 132
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 29.9 bits (68), Expect = 1.4
Identities = 17/92 (18%), Positives = 41/92 (44%), Gaps = 8/92 (8%)
Query: 287 SLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQ 346
L +S+ E + L+E + +E +++ + + E ++ +V+ L+
Sbjct: 2 LLSDSLDELNSYAEELQEQLGPYAQE-----FWARLSKETEALREELQKDLEDVRARLQP 56
Query: 347 QMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+D+L+ + + ELR +A EL++
Sbjct: 57 YLDELKAKVGQNLEELRQRLA---PYAEELRK 85
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 30.5 bits (70), Expect = 1.4
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 320 EQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDV---HQKQVAELRDEIADK--QSMIT 374
E+ A+ +E+ E +EK +E++ L++ + QLR++ ++++ EL E+A ++
Sbjct: 167 EEFEALPEEEREELEEKIDELEEELQEILRQLRELEREAREKLRELDREVALFAVGPLLD 226
Query: 375 ELKE 378
ELKE
Sbjct: 227 ELKE 230
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 30.7 bits (70), Expect = 1.4
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 10/96 (10%)
Query: 293 KEAENKKRSLEECVDALR---EECAKLKAAEQVTAVSSKEKAEEKEK----ANEVKVALE 345
++ EN +L++ V L+ E A+ KA Q A + +++ E E + LE
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 346 QQMDQLRDVHQKQVAELRD---EIADKQSMITELKE 378
Q++QL++ + E + EI D+ + EL E
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQAAKRLELSE 233
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 29.7 bits (67), Expect = 1.5
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 17/106 (16%)
Query: 285 MKSLQESMKEAENKKRSLEECVDALREECAKL--KAAEQVTAVSSKEKAEEKEKA----- 337
M + S+K K ++ V + E + A E+ + K A+ KE+A
Sbjct: 36 MDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIE 95
Query: 338 ----------NEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMI 373
L Q +L++ Q+ E ++ + K S I
Sbjct: 96 AKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNAKLSKI 141
>gnl|CDD|216133 pfam00815, Histidinol_dh, Histidinol dehydrogenase.
Length = 413
Score = 30.3 bits (69), Expect = 1.5
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
Query: 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKA--NEVKVALEQQMDQLRDVHQKQ 358
AL E K E + S E+ EE ++ E++ A+E ++ +R H Q
Sbjct: 32 KALLEYTEKFDGVELESLRVSAEEIEEAYESLDPELREAIEVAIENIRKFHAAQ 85
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 30.4 bits (69), Expect = 1.7
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 4/113 (3%)
Query: 265 IEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTA 324
+Y+ + E LL S +E K+ +E D E + K +
Sbjct: 158 EDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL 217
Query: 325 VSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
K ++ E+ E LE +++ L + +EL EIA+ + + + +
Sbjct: 218 QEIMIKVKKLEELEEELQELESKIEDLT----NKKSELNTEIAEAEKKLEQCR 266
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 30.0 bits (68), Expect = 1.7
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 18/144 (12%)
Query: 239 PFVKVKNLVARCTSMESSQAEEHKKAI-----EYEKELGETRLLLSHHEARMKSLQESMK 293
F ++ L+ +AE+ +K + + + ELG+ R L+ AR K L+ ++
Sbjct: 2 IFKRLLRLLRANIHEGLDKAEDPEKMLEQAIRDMQSELGKARQALAQVIARQKQLERKLE 61
Query: 294 EAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRD 353
E + + + LE + A K E++ ++E E + ALE Q+ Q R
Sbjct: 62 EQKEQAKKLEN-----KARAALTKGNEEL----AREALAEIATLEKQAEALETQLTQQRS 112
Query: 354 VHQKQVAELRDEIADKQSMITELK 377
V +LR ++A ++ I +LK
Sbjct: 113 ----AVEQLRKQLAALETKIQQLK 132
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 30.4 bits (69), Expect = 1.8
Identities = 20/111 (18%), Positives = 47/111 (42%), Gaps = 17/111 (15%)
Query: 285 MKSLQESMKEAEN---KKRSLEECVDALREECAKLKA-----------AEQVTAVS-SKE 329
++ LQE ++ A + L ++ + + + E AV+ K
Sbjct: 219 LEGLQEKLQRALELFMAEDGLAPRLENFQLDLQNIDELIQESLAQADWNELRKAVAAFKF 278
Query: 330 KAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE--IADKQSMITELKE 378
K + K +E L ++ D+LR+ +KQ+ +L+ + ++ + ++E
Sbjct: 279 KNLKAAKGDEEDADLLEEADKLREEAKKQLEKLKTDYFTRSEEDHLRIMQE 329
>gnl|CDD|218872 pfam06048, DUF927, Domain of unknown function (DUF927). Family of
bacterial proteins of unknown function. The C-terminal
half of this family contains a P-loop motif.
Length = 284
Score = 29.9 bits (68), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 112 LAGYNGTIF-AYGQTSSGKTHTME---GVMGDPN 141
L G G F G +S+GKT ++ V G+P+
Sbjct: 186 LLGAEGGGFHFVGDSSTGKTTALKLAASVWGNPD 219
Score = 29.9 bits (68), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 150 LAGYNGTIF-AYGQTSSGKTHTME---GVMGDPN 179
L G G F G +S+GKT ++ V G+P+
Sbjct: 186 LLGAEGGGFHFVGDSSTGKTTALKLAASVWGNPD 219
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 30.4 bits (69), Expect = 1.8
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 320 EQVTAVSSKEKAEEKEKANEVKVALEQQ------MDQLRDVHQKQVAELRDEIADKQSMI 373
+Q + +KAE +EK ++ K L +Q ++Q R+ +K + L + Q +
Sbjct: 176 KQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQL 235
Query: 374 TELKE 378
+EL+
Sbjct: 236 SELRA 240
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 29.9 bits (68), Expect = 2.0
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLKA----AEQVTAVSSKEKAEEKEKAN 338
A + SL+ + L++ V LR + +A + + A + A + +A
Sbjct: 66 ADLLSLERQ------GNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAG 119
Query: 339 EVKVALEQQ-------MDQLRDVHQKQVAELRDEIADKQS 371
E+ L+ + + Q+ ++Q Q+A LR ++A ++
Sbjct: 120 ELAQELDSEKQVSARALAQVELLNQ-QIAALRRQLAALEA 158
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 28.8 bits (65), Expect = 2.3
Identities = 30/112 (26%), Positives = 43/112 (38%), Gaps = 29/112 (25%)
Query: 258 AEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
AE K +YE++L R K Q + EAE + L
Sbjct: 53 AEAEKLEAQYEQQLASAR----------KQAQAVIAEAEAEADKL--------------- 87
Query: 318 AAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADK 369
AAE + A + E KEKA + +EQQ ++QV L +I +K
Sbjct: 88 AAEAL-AEAQAEAQASKEKA---RREIEQQKQAALAQLEQQVDALSRQILEK 135
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 28.9 bits (65), Expect = 2.4
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 319 AEQVTAVSSKEKAEEKEKANEVKVAL------EQQMDQLRDVHQKQVAELRDEIADKQSM 372
E+ V ++AE KAN++ V L E+ QLR Q+A+ R +A ++
Sbjct: 28 LERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQ----QLAQARALLAQREQR 83
Query: 373 ITELK 377
I LK
Sbjct: 84 IERLK 88
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 29.9 bits (68), Expect = 2.6
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
RM E + K++ E AK +A E V ++ K E + K
Sbjct: 506 IERMVKDAEEYAAEDKKRKERIE---------AKNEAEEYVYSLEKSLKEEGDKLPEADK 556
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITEL 376
+E+ ++ L++ + E ++EI K + ++
Sbjct: 557 KKVEEAIEWLKEELEG---EDKEEIEAKTEELQKV 588
>gnl|CDD|214787 smart00721, BAR, BAR domain.
Length = 239
Score = 29.3 bits (66), Expect = 2.6
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 14/106 (13%)
Query: 258 AEEHKKAIEYEKELGETRL-----LLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
E KK ++ E+ L + + LL+ K ++++ K+ E K D+ R +
Sbjct: 101 GEALKKLLQVEESLSQVKRTFILPLLNFLLGEFKEIKKARKKLERKLLDY----DSARHK 156
Query: 313 CAKLKAAEQVTAVSSKEKAEE-----KEKANEVKVALEQQMDQLRD 353
K K +++ KAEE K++ E L +++ QL
Sbjct: 157 LKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESNAQLVEELPQLVA 202
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 29.5 bits (67), Expect = 3.0
Identities = 19/114 (16%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 264 AIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVT 323
A++ ++ + + ++ K + + LE+ + A L+A +
Sbjct: 50 AVDEDETPKKN-------PVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQAENALP 102
Query: 324 AVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
+ + + K E K A E ++ Q K++ ELRDE+ + ++++ +
Sbjct: 103 EWKKELEKPSEPKEEEPKAAAESKVVQ------KELDELRDELKELKNLLEDQL 150
>gnl|CDD|217188 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 29.6 bits (67), Expect = 3.0
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 269 KELGETRLLLSHHE--ARMKSLQESMKEAENKKRSLEEC 305
+G TRL LSH E A + SL +K ++ ++ L
Sbjct: 338 NLVGWTRLFLSHKEVKAYLSSLHAHLKVSKEREFVLFTL 376
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 29.6 bits (67), Expect = 3.0
Identities = 20/111 (18%), Positives = 50/111 (45%), Gaps = 14/111 (12%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECA---KLK-----------AAEQVTAVSS 327
A++K L+ + + + ++L + ++ + EE KLK E+ A +
Sbjct: 150 LAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQ 209
Query: 328 KEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
E + + +K +++ + + + Q E+ +E+ + Q+ + EL+E
Sbjct: 210 GELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRE 260
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 29.6 bits (67), Expect = 3.0
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 300 RSLEECVDALREECAKLKAAEQV---TAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ 356
S +E +D L ++ A+LKA E+ A+ K + + E+ LE + L +
Sbjct: 166 ASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLR 225
Query: 357 KQVAELRDEIADK--QSMITELKE 378
+ ++E+ K + + EL+
Sbjct: 226 LEFEREKEELRKKYEEKLRQELER 249
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 29.4 bits (67), Expect = 3.3
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 16 LKEAKEGAMK--DRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 66
E E ++ QY+ L A ++ EG + K+Y +++KE ++
Sbjct: 213 ESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKS 265
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 29.5 bits (67), Expect = 3.4
Identities = 24/127 (18%), Positives = 42/127 (33%), Gaps = 22/127 (17%)
Query: 263 KAIEYEKELGETRLLLSH-HEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQ 321
A+E E + E L H+ R+ L+ + E + +LE +E + A
Sbjct: 429 AALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILALRA 488
Query: 322 VTAVSSKEKAEEKEKANEVKVALEQQMDQLR--------DVHQKQVAE------------ 361
+ A++ LE + + +V + VAE
Sbjct: 489 ELEADADAPADDDAALRAQLAELEAALASAQGEEPLVFPEVDAQAVAEVVADWTGIPVGR 548
Query: 362 -LRDEIA 367
+RDEI
Sbjct: 549 MVRDEIE 555
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 29.0 bits (65), Expect = 3.6
Identities = 23/117 (19%), Positives = 47/117 (40%), Gaps = 2/117 (1%)
Query: 255 SSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECA 314
+ E ++ E + SH ++++LQE +K E + L L+ E
Sbjct: 133 DADEESEDESSESTPLRPQESSSSSHGCFQLEALQEKLKLLEEENEHLRSEASHLKTETV 192
Query: 315 KLKAAEQ-VTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQ 370
+ EQ + K+ E ++ + L ++ + L Q+++ L +I D Q
Sbjct: 193 TYEEKEQQLVNDCVKQLREANDQIASLSEELAKKTEDLER-QQEEITHLLSQIVDLQ 248
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 29.6 bits (66), Expect = 3.7
Identities = 34/150 (22%), Positives = 73/150 (48%), Gaps = 11/150 (7%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGET----RLLLSHHEARMKSLQESMKEA 295
++K + + + + +EH+ ++Y K+ E R ++ EA+++S +E +K
Sbjct: 184 YIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSY 243
Query: 296 ENKKRSLEECVDALREECAKL-KAAEQVTAVSSKEKAEEK------EKANEVKVALEQQM 348
EN+ L+ + + +K+ K ++ A+ S++K EK K +V ++Q+
Sbjct: 244 ENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQL 303
Query: 349 DQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ L HQ+ V E E+ D Q + +L +
Sbjct: 304 NDLYHNHQRTVREKERELVDCQRELEKLNK 333
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 29.4 bits (66), Expect = 3.8
Identities = 29/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAI-EYEKELGETRLLLSHHEARMKS-LQESMKEAENKK 299
+V+N R ++ K+A+ E L E LS + + L + + +
Sbjct: 114 EVRNYTGRLKEGRERHFQKSKEALEETIGRLREELAALSREVGKQRGLLSRGLATFKRDR 173
Query: 300 RSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQV 359
++ REE K AA++ A+ + + ++ V +L Q QL V +K++
Sbjct: 174 ILQQQ----WREEQEKYDAADKARAIYALQTKADERNLETVLQSLSQADFQLAGVAEKEL 229
Query: 360 AELRDEIADKQSMITELK 377
+ I + + I EL+
Sbjct: 230 ETVEARIKEARYEIEELE 247
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 29.3 bits (66), Expect = 3.8
Identities = 28/138 (20%), Positives = 64/138 (46%), Gaps = 17/138 (12%)
Query: 243 VKNLVARCTSMESSQAEEHKKAIEYEKE--LGETRLLLSHHEARMKSLQESMKEAENKKR 300
+K LV R + + ++ ++ EKE E R ++ +E R+K L+E+++ E +
Sbjct: 380 IKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENS 439
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360
L+ ++ L+ E KL++ + E + KV ++++ +++
Sbjct: 440 ELKRELEELKREIEKLES-----------ELERFRREVRDKVRKDREIRAR----DRRIE 484
Query: 361 ELRDEIADKQSMITELKE 378
L E+ +K+ + EL+
Sbjct: 485 RLEKELEEKKKRVEELER 502
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 28.7 bits (64), Expect = 3.9
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 258 AEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
E K E EK E + E+ K L+E KE E + V+ LR+ A +
Sbjct: 4 KEIRNKTDELEKLKDEIKAEEEALESEEKHLKEYDKEMEELLEEKMQHVEELRQIHADIN 63
Query: 318 AAEQVTAVSSKEKAEEKEKANEVK---VALEQQMDQLR 352
E S E K + L++ ++++R
Sbjct: 64 DMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMR 101
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 29.1 bits (65), Expect = 4.0
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
YE+EL L E R+K+L+E K+AEN+ EE L++ KL A
Sbjct: 101 NYERELDRNLEL----EVRLKALEELEKKAENEAAEAEEEAKLLKD---KLDAESLKL-- 151
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
EK ++ ++A E ++ + +++ Q EL+ ++ + + +L+E
Sbjct: 152 -QNEKEDQLKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEE 203
Score = 29.1 bits (65), Expect = 4.2
Identities = 27/135 (20%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
L + ++E + ++ E +L L ++ +R K L S+ A ++
Sbjct: 504 ATNALRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQI 563
Query: 302 LEECVDALREECAKLKA------------AEQVTAVSSKEKAEEKEKANEVKVALEQQMD 349
++ ++AL+ EC KLK + AV S ++E + + + E++
Sbjct: 564 AKQTIEALQAECEKLKERLQALEEGKSQPGDLEKAVGSHISSKEIAQLKKQVESAEKKNQ 623
Query: 350 QLRDVHQKQVAELRD 364
+L++V Q +++E R
Sbjct: 624 RLKEVFQTKISEFRR 638
>gnl|CDD|236836 PRK11072, PRK11072, bifunctional glutamine-synthetase
adenylyltransferase/deadenyltransferase; Reviewed.
Length = 943
Score = 29.4 bits (67), Expect = 4.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 344 LEQQMDQLRDVHQKQV 359
EQQM+ LR Q QV
Sbjct: 610 EEQQMEALRQFKQAQV 625
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 29.0 bits (65), Expect = 4.3
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 3/108 (2%)
Query: 258 AEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
++ ++ E ++ L R + LQ+ ++A +S E+ ++ L+E C
Sbjct: 208 SKHLQEEGELQQLLKLLRAEGESEKQ---ELQQYRQKAHRILQSKEKRINFLKEGCLFEG 264
Query: 318 AAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDE 365
+ +E E E E LE Q+ QLR Q + AE E
Sbjct: 265 LDSSTAQIELEELKHESEHVQEEITKLEGQIIQLRSEAQDREAEASGE 312
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.8 bits (64), Expect = 4.6
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 254 ESSQAEEHKKAIEYE--KELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALRE 311
A E KK E K E L + EA+ K+ + + E K ++ E
Sbjct: 138 ARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAE 197
Query: 312 ECAKLKAAEQVTAVSSKEKAEEKEKA 337
AK A + +K KAE+K +A
Sbjct: 198 AEAKAAAEKAKAEAEAKAKAEKKAEA 223
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 29.1 bits (65), Expect = 4.9
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 12/122 (9%)
Query: 258 AEEHKKAIE-YEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
A ++ IE Y+ +L E + L ++ E +E E + + E VD L+ + A
Sbjct: 343 ALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADY 402
Query: 317 KAA---EQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMI 373
+ A +Q A+ ++ E+A E + L D+ E + K+
Sbjct: 403 QQALDVQQTRAIQYQQAIAALERAKE--------LCHLPDLTADSAEEWLETFQAKEEEA 454
Query: 374 TE 375
TE
Sbjct: 455 TE 456
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 27.5 bits (62), Expect = 5.0
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 300 RSLEECVDALREECAKLKAAEQVTA---VSSKEKAEEKEKANEVKVALEQQMDQLRDVHQ 356
R LE + +L++E A+L+A V E+ EE + + LE++++ L ++
Sbjct: 27 RRLEGELASLKDELARLEAERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYE 86
Query: 357 ----------KQVAELRDEIAD 368
++V ELR ++ D
Sbjct: 87 TTLELLGEKSERVEELRADVVD 108
>gnl|CDD|128345 smart00030, CLb, CLUSTERIN Beta chain.
Length = 206
Score = 28.2 bits (63), Expect = 5.0
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 259 EEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKA 318
+E K A+ K + + + L+ KSL +++EA+ KK EE + RE KLK
Sbjct: 22 KEIKNAL---KGVKQIKTLIEKTNKERKSLLSTLEEAKKKK---EEALKDTRESEEKLKE 75
Query: 319 AEQV 322
++ V
Sbjct: 76 SQGV 79
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 28.7 bits (64), Expect = 5.1
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 280 HHEARMKSLQESMKEAENKKRSLEEC----------VDALREECAKLKAAEQVTAVSSKE 329
HH + +E KE + +L L E A++K TA ++
Sbjct: 286 HHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKT--RTAEKNEA 343
Query: 330 KAEEKEKANEVKVALEQQMDQLRDVHQKQ-VAELRDEIADKQSMITELKE 378
KA +KE A + + A E+++++ + +A R A ++ L +
Sbjct: 344 KARKKEIAQKRRAA-EREINREARQERAAAMARARARRAAVKAKKKGLID 392
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 28.6 bits (64), Expect = 5.2
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 21/127 (16%)
Query: 256 SQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAK 315
S+ EE + +Y +L LL HEA L EE V+AL E +
Sbjct: 17 SEKEELLSSTDYGDDLESVEALLKKHEALEAELAA-----------HEERVEALNELGEQ 65
Query: 316 LKAAEQVTAVSSKEKAEE--------KEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367
L A +E+ EE +E A E + LE+ +D + +L +
Sbjct: 66 LIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFR--DADDLEQWLE 123
Query: 368 DKQSMIT 374
+K++ +
Sbjct: 124 EKEAALA 130
>gnl|CDD|223537 COG0461, PyrE, Orotate phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 201
Score = 28.4 bits (64), Expect = 5.2
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKV 342
S+ E V+ALRE A++ V + A+E K VK+
Sbjct: 127 SILEAVEALREAGAEVVGV--AVIVDRQSGAKEVLKEYGVKL 166
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.7 bits (65), Expect = 5.4
Identities = 27/122 (22%), Positives = 58/122 (47%), Gaps = 24/122 (19%)
Query: 267 YEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVS 326
K + E +L + A+ + ++E+ KEAE K+ L+A E+V +
Sbjct: 18 LRKRIAEKKLGSAEELAK-RIIEEAKKEAETLKKEAL------------LEAKEEVHKLR 64
Query: 327 SKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELR----------DEIADKQSMITEL 376
++ + E KE+ NE++ LE+++ Q + +++ L E+++K+ + E
Sbjct: 65 AELERELKERRNELQ-RLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEK 123
Query: 377 KE 378
+E
Sbjct: 124 EE 125
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 28.6 bits (64), Expect = 6.2
Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 18/87 (20%)
Query: 306 VDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK----------VALEQQMDQLRDVH 355
D ++E +A ++ A S++ + ++K + E++ LE++M++L
Sbjct: 520 SDVQKQENQTDEAPKENNANSAQARKDQKRREAELRTQTQPLRKEIARLEKEMEKL---- 575
Query: 356 QKQVAELRDEIAD----KQSMITELKE 378
Q+A+ +++ D QS EL
Sbjct: 576 NAQLAQAEEKLGDSELYDQSRKAELTA 602
>gnl|CDD|227424 COG5093, COG5093, Uncharacterized conserved protein [Function
unknown].
Length = 185
Score = 27.9 bits (62), Expect = 6.4
Identities = 34/175 (19%), Positives = 62/175 (35%), Gaps = 26/175 (14%)
Query: 200 ENLEFIIKVSYFEIY----MDKIRDLLDVSKVNLSVHEDKNRVPF-----VKVKNLVARC 250
E + FI EI + ++R LL+ + + D RVP +K +N+ +
Sbjct: 14 EEILFIAYNELIEIEPMTTIPQLR-LLERATYPPMMPLDIARVPLWAALLLKKQNM-CKI 71
Query: 251 TSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR 310
Q E K +I+ E E + L + E + E + +EE R
Sbjct: 72 VLPSWLQLESLKMSIDVEIEKADEFSEL--PPYWLPLATELLNENCDDVEDIEE----SR 125
Query: 311 EECAKLKAAEQVTAVSSKEKAEEKE---------KANEVKVALEQQMDQLRDVHQ 356
++ Q + + EK + NE++ + + MD R +
Sbjct: 126 MIVEDIREIRQAKTLKGLKCLNEKALNLDNLTLFEINEIRPLILESMDVGRRIED 180
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 28.5 bits (65), Expect = 6.6
Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 24/115 (20%)
Query: 262 KKAIEY----EKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
+ A+EY E L E LL +A+ L E ++ + + LE+ ++ L+ + A
Sbjct: 690 EAALEYLNEQEALLKELAALL---KAKPSELPERVEALLEELKELEKELEQLKAKLAAAA 746
Query: 318 AAEQVTAVSSKEKAEEKEKANEVKVALEQ----QMDQLRDVHQKQVAELRDEIAD 368
A + + ++ N VKV Q LR + +L+D++
Sbjct: 747 AG---------DLLAQAKEVNGVKVLAAQVEGVDAKALRTL----ADDLKDKLGS 788
Score = 28.5 bits (65), Expect = 7.5
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 303 EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAEL 362
E ++ L E+ A LK A K K +E+ +E +++L+++ +K++ +L
Sbjct: 690 EAALEYLNEQEALLKEL----------AALLKAKPSELPERVEALLEELKEL-EKELEQL 738
Query: 363 RDEIADKQS 371
+ ++A +
Sbjct: 739 KAKLAAAAA 747
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 28.6 bits (64), Expect = 7.0
Identities = 21/87 (24%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Query: 290 ESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMD 349
E +EA + R+ ++ L E L+A ++ +S E+ + A E AL QQ
Sbjct: 242 ERYEEARAELRAARRNLELLTERLEALQA--ELDEISLDEELLAQAAAIE---ALHQQRG 296
Query: 350 QLRDVHQKQVAELRDEIADKQSMITEL 376
+ R+ ++ + + EIA+ + L
Sbjct: 297 EYRN-AEQDLPDREGEIANAREAAAAL 322
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 28.5 bits (65), Expect = 7.0
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL-RDVHQKQVAELRDEIADKQSMITE 375
K + + +V K+K +KE +K LE+QM + +++ ++ A LRDEI E
Sbjct: 592 KIRDILDSVYKKDKLSKKELEKLIK-ELEKQMKEAAKNLEFEEAARLRDEIK-------E 643
Query: 376 LKE 378
LKE
Sbjct: 644 LKE 646
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 28.5 bits (63), Expect = 7.2
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 286 KSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKA--EEKEKANEVKVA 343
++L+ + + ++ + L ALR E A + A ++ +A E +KA + + A
Sbjct: 67 RNLRSGVFQLDDIRPQLR----ALRTELGT--AQGEKRAAETEREAARSELQKARQEREA 120
Query: 344 LEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
+ Q++ R K EL Q + T LK
Sbjct: 121 VRQELAAARQNLAKAQQELARLTKQAQDLQTRLK 154
>gnl|CDD|172948 PRK14473, PRK14473, F0F1 ATP synthase subunit B; Provisional.
Length = 164
Score = 27.6 bits (61), Expect = 7.3
Identities = 30/103 (29%), Positives = 56/103 (54%), Gaps = 12/103 (11%)
Query: 275 RLLLSHHEARMKSLQESMKEAE-------NKKRSLEECVDALREECAKL--KAAEQVTAV 325
R +L+ R + ++ES+++AE N KR E + R+E AK+ +A E+ A
Sbjct: 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERARAQ 90
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIAD 368
++ A+ + +A ++K Q +Q R Q+ ++EL+ +IAD
Sbjct: 91 EAEIIAQARREAEKIKEEARAQAEQER---QRMLSELKSQIAD 130
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 27.6 bits (62), Expect = 7.3
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKA-----AEQVTAVSSKEKAEEKEK 336
+ R + + + EAE K + + +E + + EQ + + E K +
Sbjct: 36 DERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAE 95
Query: 337 ANEV--------KVALEQQMDQLRDVHQKQVAELRDEIADK 369
A E + +E + ++ + + +VAEL IA+K
Sbjct: 96 AEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEK 136
>gnl|CDD|153280 cd07596, BAR_SNX, The Bin/Amphiphysin/Rvs (BAR) domain of Sorting
Nexins. BAR domains are dimerization, lipid binding and
curvature sensing modules found in many different
proteins with diverse functions. Sorting nexins (SNXs)
are Phox homology (PX) domain containing proteins that
are involved in regulating membrane traffic and protein
sorting in the endosomal system. SNXs differ from each
other in their lipid-binding specificity, subcellular
localization and specific function in the endocytic
pathway. A subset of SNXs also contain BAR domains. The
PX-BAR structural unit determines the specific membrane
targeting of SNXs. BAR domains form dimers that bind to
membranes, induce membrane bending and curvature, and
may also be involved in protein-protein interactions.
Length = 218
Score = 28.1 bits (63), Expect = 7.6
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 266 EYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAV 325
EY + + L + +LQ K+ +KK LE+ A + AK++ E+
Sbjct: 97 EYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEE 156
Query: 326 SSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRD 364
+ E +++ E+ L++ +L+ H+++ +L+
Sbjct: 157 AESALEEARKRYEEISERLKE---ELKRFHEERARDLKA 192
>gnl|CDD|119329 cd06572, Histidinol_dh, Histidinol dehydrogenase, HisD, E.C
1.1.1.23. Histidinol dehydrogenase catalyzes the last
two steps in the L-histidine biosynthesis pathway, which
is conserved in bacteria, archaea, fungi, and plants.
These last two steps are (i) the NAD-dependent oxidation
of L-histidinol to L-histidinaldehyde, and (ii) the
NAD-dependent oxidation of L-histidinaldehyde to
L-histidine. In most fungi and in the unicellular
choanoflagellate Monosiga bevicollis, the HisD domain is
fused with units that catalyze the second and third
biosynthesis steps in this same pathway.
Length = 390
Score = 28.2 bits (64), Expect = 7.7
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 8/60 (13%)
Query: 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKA-----NEVKVALEQQMDQLRDVHQKQVAE 361
+AL E K + V S + EE + A E+K A+E + +R H+ Q+ +
Sbjct: 18 EALLEYTEKF---DGVELESLRVSEEEIDAAYAAVDPELKEAIELAAENIRAFHEAQLPK 74
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 28.2 bits (63), Expect = 7.8
Identities = 19/93 (20%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 284 RMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVA 343
R+ LQ+ +++A + LE + + +L+ + + +E+ + E ++ +K
Sbjct: 482 RITELQQLLEDANRRNNELETQLRLANQRILELQQQVEDLQKALQEQGSKSEDSSLLKSK 541
Query: 344 LEQQMDQLRDVHQKQVAELRDEIADKQSMITEL 376
LE+ ++QL + + +E+ K+ I EL
Sbjct: 542 LEEHLEQLHEAN--------EELQKKREQIEEL 566
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 28.2 bits (63), Expect = 8.0
Identities = 22/125 (17%), Positives = 45/125 (36%), Gaps = 15/125 (12%)
Query: 269 KELGETRLLLSHHEARMKSLQESMKEAENKKRSLE----ECVDALREECAKLKAAEQVTA 324
+L R L+ EAR+ SL + + E + LR++ A+++ +
Sbjct: 246 TQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLS 305
Query: 325 VSSKEKAEEKEKANEVKVALEQQMDQL-----------RDVHQKQVAELRDEIADKQSMI 373
K + L QQ+ + ++Q A L E+A + +
Sbjct: 306 TELGAKHPQLVALEAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRL 365
Query: 374 TELKE 378
++L +
Sbjct: 366 SKLPK 370
>gnl|CDD|233816 TIGR02302, aProt_lowcomp, TIGR02302 family protein. Members of
this family are long (~850 residue) bacterial proteins
from the alpha Proteobacteria. Each has 2-3 predicted
transmembrane helices near the N-terminus and a long
C-terminal region that includes stretches of
Gln/Gly-rich low complexity sequence, predicted by TMHMM
to be outside the membrane. In Bradyrhizobium japonicum,
two tandem reading frames are together homologous the
single members found in other species; the cutoffs
scores are set low enough that the longer scores above
the trusted cutoff and the shorter above the noise
cutoff for this model.
Length = 851
Score = 28.4 bits (63), Expect = 8.4
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 284 RMKSLQESMKEAENKKRS-----LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKAN 338
R + LQ M + EN RS ++ + L++ L+ + + ++
Sbjct: 566 RQQDLQNMMDQIENLARSGDRDQAKQLLSQLQQMMNNLQMGQ----------PGQGQQMG 615
Query: 339 EVKVALEQQMDQLRDVHQKQVAELRDE 365
+ +EQQM++L ++ +KQ +LRDE
Sbjct: 616 DQSGDMEQQMNKLGELMRKQ-QQLRDE 641
>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain. This domain is found in a
number proteins including Rhophilin and BRO1. It is
known to have a role in endosomal targeting. ESCRT-III
subunit Snf7 binds to a conserved hydrophobic patch in
the BRO1 domain that is required for protein complex
formation and for the protein-sorting function of BRO1.
Length = 374
Score = 28.0 bits (63), Expect = 9.4
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 12 LETALKEAKEGAMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRI--KEAVRQKNL 69
L+ AL KE A+K L LK K+ + K + + D I +E + +L
Sbjct: 262 LQKALSALKE-ALKLAPLSSSSELLEDLKGLKDRIKEKLKEAEKDNDFIYHEEVPDEVSL 320
Query: 70 ARRGPAP 76
PAP
Sbjct: 321 PPIKPAP 327
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 27.2 bits (61), Expect = 9.4
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 146 IPHVLAGYNGTIFAYGQTSSGKT 168
IP +L+G + + T SGKT
Sbjct: 8 IPAILSGKD--VLVQAPTGSGKT 28
>gnl|CDD|223219 COG0141, HisD, Histidinol dehydrogenase [Amino acid transport and
metabolism].
Length = 425
Score = 27.9 bits (63), Expect = 9.7
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 303 EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKA-----NEVKVALEQQMDQLRDVHQK 357
E AL E AK + V + + A E + A EVK ALE + + H+
Sbjct: 38 ERGDAALLEYTAKF---DGVEPDNLRVSAAEIDAAYQRLDPEVKEALEVAAENIEAFHEA 94
Query: 358 QVAE 361
Q+ +
Sbjct: 95 QLPK 98
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 27.5 bits (61), Expect = 9.8
Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 287 SLQESMKEAENKKRSLEECVDALREECAK-LKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
SL + ++E +++ E A E AK + Q+ A +K + ++KA K E
Sbjct: 100 SLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQKARAAKERKE 159
Query: 346 QQMDQLRD 353
+ + + R+
Sbjct: 160 RLVAEARE 167
>gnl|CDD|222255 pfam13600, DUF4140, N-terminal domain of unknown function
(DUF4140). This family is often found at the N-terminus
of its member proteins, with DUF4139, pfam13598, at the
C-terminus.
Length = 101
Score = 26.5 bits (59), Expect = 9.8
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 322 VTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELK 377
+ +VS + E + LE+++ L D ++A L E ++ I L
Sbjct: 50 ILSVSVRRDYLPDEATSPALAELEEELRALED----ELAALEAEKEALEAQIKFLS 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.128 0.346
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 18,905,994
Number of extensions: 1870879
Number of successful extensions: 3952
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3418
Number of HSP's successfully gapped: 642
Length of query: 378
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 279
Effective length of database: 6,546,556
Effective search space: 1826489124
Effective search space used: 1826489124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.0 bits)