RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5719
(378 letters)
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 199 bits (509), Expect = 2e-61
Identities = 95/166 (57%), Positives = 107/166 (64%), Gaps = 38/166 (22%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
+ K Y FD+VF+ + +QE+VY++ AK IV DVL GYNGTIF
Sbjct: 39 VVIASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIF---------------- 82
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196
AYGQTSSGKTHTMEG + DP GIIPRIV DIFN+IY
Sbjct: 83 ----------------------AYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 197 QMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
MDENLEF IKVSYFEIY+DKIRDLLDVSK NLSVHEDKNRVP+VK
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVK 166
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 197 bits (503), Expect = 4e-60
Identities = 111/171 (64%), Positives = 118/171 (69%), Gaps = 38/171 (22%)
Query: 72 RGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTH 131
GK YLFDKVFKPNA+QEKVY+EAAKSIV+DVLAGYNGTIF
Sbjct: 41 VEENCISIAGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIF----------- 89
Query: 132 TMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDI 191
AYGQTSSGKTHTMEGV+GD KQGIIPRIVNDI
Sbjct: 90 ---------------------------AYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDI 122
Query: 192 FNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
FNHIY M+ NLEF IKVSY+EIYMDKIRDLLDVSKVNLSVHEDKNRVP+VK
Sbjct: 123 FNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYVK 173
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 193 bits (493), Expect = 8e-59
Identities = 62/161 (38%), Positives = 84/161 (52%), Gaps = 37/161 (22%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
+ FD+VF + Q ++D + K V D+L GYNGT+FAYGQT +GK++TM G D
Sbjct: 47 GSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSID-- 104
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
DP+ +G+IPRIV IF I N
Sbjct: 105 -----------------------------------DPDGRGVIPRIVEQIFTSILSSAAN 129
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
+E+ ++VSY EIYM++IRDLL NL VHE+KNR +VK
Sbjct: 130 IEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVK 170
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 183 bits (468), Expect = 7e-55
Identities = 57/170 (33%), Positives = 81/170 (47%), Gaps = 40/170 (23%)
Query: 74 PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133
K + FD V+ NA Q ++YDE + +V
Sbjct: 60 KGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVD------------------------ 95
Query: 134 EGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFN 193
VL G+NGTIFAYGQT +GKT+TMEG+ GDP K+G+IP + IF
Sbjct: 96 --------------SVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFT 141
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS-KVNLSVHEDKNRVPFVK 242
HI +N +++++ SY EIY ++IRDLL L + E + +VK
Sbjct: 142 HI-SRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTGVYVK 190
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 181 bits (461), Expect = 5e-54
Identities = 57/179 (31%), Positives = 74/179 (41%), Gaps = 35/179 (19%)
Query: 71 RRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKT 130
R G K Y FD VF + Q VY I+ +V+ GYN TIFAYGQT +GKT
Sbjct: 44 RTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKT 103
Query: 131 HTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVND 190
TMEG E + GIIPR ++
Sbjct: 104 FTMEGERSPNE------------------------------EYTWEEDPLAGIIPRTLHQ 133
Query: 191 IFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVKVKNL 246
IF + D EF +KVS EIY +++ DLL+ S L + +D V +K L
Sbjct: 134 IFEKL--TDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGL 190
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 180 bits (458), Expect = 1e-53
Identities = 43/177 (24%), Positives = 68/177 (38%), Gaps = 42/177 (23%)
Query: 66 QKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQT 125
+ + + FD V+ + ++ + K ++ VL G+N TIFAYGQT
Sbjct: 40 DPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQT 99
Query: 126 SSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIP 185
+GKT TM G+ + G IP
Sbjct: 100 GAGKTWTM-----------------------------------------GGNKEEPGAIP 118
Query: 186 RIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
+F+ I N F++ SY E+Y ++IRDL+ + L + EDK R +V
Sbjct: 119 NSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIK-NNTKLPLKEDKTRGIYVD 174
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 179 bits (457), Expect = 1e-53
Identities = 59/168 (35%), Positives = 81/168 (48%), Gaps = 44/168 (26%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
Q+ K + FD+VF N T + VY+E A I+ + GYNGTIFAYGQT+SGKT+TM
Sbjct: 39 QVDGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM--- 95
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196
MG + G+IPR ++DIF I
Sbjct: 96 --------------------------------------MGSEDHLGVIPRAIHDIFQKI- 116
Query: 197 QMDENLEFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKNRVPFVK 242
+ + EF+++VSY EIY + I DLL + L + ED NR +V
Sbjct: 117 KKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNRNVYVA 164
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 177 bits (452), Expect = 1e-52
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 33/174 (18%)
Query: 74 PAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTM 133
K + FD+ F P + Q VY ++ +VL GYN T+FAYGQT +GKTHTM
Sbjct: 59 HTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118
Query: 134 EGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFN 193
G +T ++ D + GIIPR ++ +F+
Sbjct: 119 VG------------------------------NETAELKSSWEDDSDIGIIPRALSHLFD 148
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS-KVNLSVHEDKNRVPFVKVKNL 246
+ M +E+ +++SY E+Y +++ DLL + + +D + V ++ L
Sbjct: 149 ELRMM--EVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGL 200
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 177 bits (452), Expect = 2e-52
Identities = 40/167 (23%), Positives = 66/167 (39%), Gaps = 44/167 (26%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
+ Y FD + +TQ+ +Y + + I+ +L G N ++ AYG T +GKTHTM
Sbjct: 62 QETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM----- 116
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
+G P + G+IPR + D+ +
Sbjct: 117 ------------------------------------LGSPEQPGVIPRALMDLLQLTREE 140
Query: 199 ---DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
+ +SY EIY +K+ DLLD + +L + ED +
Sbjct: 141 GAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIP 187
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 175 bits (446), Expect = 5e-52
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 44/171 (25%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
+G+ + + F V +A QE VY + ++
Sbjct: 45 TLGRDRHFGFHVVLAEDAGQEAVYQACVQPLLE--------------------------- 77
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEG---VMGDPNKQGIIPRIVNDIFN 193
G+N T+FAYGQT SGKT+TM ++QGI+PR + + F
Sbjct: 78 -----------AFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDV--SKVNLSVHEDKNRVPFVK 242
I ++ L+ ++ VSY E+Y ++ RDLL+V + ++ + ED+ +
Sbjct: 127 LI-DENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLC 176
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 175 bits (445), Expect = 2e-51
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 49/181 (27%)
Query: 72 RGPAPQIGKGKFYLFDKVFKPN--------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYG 123
P K + FD + + A+Q++VY + + ++ GYN IFAYG
Sbjct: 38 VNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYG 97
Query: 124 QTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGI 183
QT +GK++TM G + ++QGI
Sbjct: 98 QTGAGKSYTMMGK---------------------------------------QEKDQQGI 118
Query: 184 IPRIVNDIFNHIYQ-MDENLEFIIKVSYFEIYMDKIRDLLD-VSKVNLSVHEDKNRVPFV 241
IP++ D+F+ I ++N+ + ++VSY EIY +++RDLL+ +K NL V E P+V
Sbjct: 119 IPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 178
Query: 242 K 242
+
Sbjct: 179 E 179
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 173 bits (441), Expect = 2e-51
Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 45/167 (26%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
GK + DKVF P A+Q+ V+ E +++V+ + G+N IFAYGQT +GKT+TMEG
Sbjct: 45 GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEG--- 100
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
GI R + +F+ + +
Sbjct: 101 --------------------------------------TAENPGINQRALQLLFSEVQEK 122
Query: 199 DENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRVPFVK 242
+ E+ I VS EIY + +RDLL K+ + + D + +V
Sbjct: 123 ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVP 169
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 172 bits (438), Expect = 1e-50
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 49/189 (25%)
Query: 64 VRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYG 123
+ K RRG + D V +A+Q+ VY+ AK +VS L GYNGTI
Sbjct: 53 IHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQALDGYNGTIM--- 108
Query: 124 QTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGI 183
YGQT +GKT+TM G + +GI
Sbjct: 109 -----------------------------------CYGQTGAGKTYTMMGATENYKHRGI 133
Query: 184 IPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDV------SKVNLSVHEDKNR 237
+PR + +F I + ++VSY EIY + + DLL S +++ E+
Sbjct: 134 LPRALQQVFRMI-EERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQG 192
Query: 238 VPFVKVKNL 246
V +K L
Sbjct: 193 ---VFIKGL 198
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 172 bits (437), Expect = 2e-50
Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 38/183 (20%)
Query: 61 KEAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA-GYNGTI 119
+ + + + ++ DKVF VY+ K ++ D+ G +
Sbjct: 29 NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSC 88
Query: 120 FAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 179
FAYGQT SGKT+TM G G +
Sbjct: 89 FAYGQTGSGKTYTMLGSQPY------------------------------------GQSD 112
Query: 180 KQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVP 239
GI DIF + D++ I +S++EIY K+ DLL K ++ E+ +
Sbjct: 113 TPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK-MVAALENGKKEV 171
Query: 240 FVK 242
VK
Sbjct: 172 VVK 174
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 168 bits (427), Expect = 4e-49
Identities = 36/173 (20%), Positives = 56/173 (32%), Gaps = 43/173 (24%)
Query: 72 RGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTH 131
I + FD F +Q+++Y +V +L G+ T AYGQT +GK++
Sbjct: 51 SDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSY 110
Query: 132 TMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDI 191
+M P GI+PR + DI
Sbjct: 111 SMGMTPPGEI-----------------------------------LPEHLGILPRALGDI 135
Query: 192 FNHIYQMDEN--LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
F + EN + S+ EIY +K DLL + +
Sbjct: 136 FERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTP------HMPMVAARCQ 182
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 168 bits (428), Expect = 4e-49
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 45/167 (26%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
K K +++D+VF NATQ+ V+++ K +V + GYN IFAYGQT SGKT T+
Sbjct: 44 DKAKQHMYDRVFDGNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTI----- 97
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
G + G+ PR ++++F + +
Sbjct: 98 ------------------------------------YGADSNPGLTPRAMSELFRIMKKD 121
Query: 199 DENLEFIIKVSYFEIYMDKIRDLL---DVSKVNLSVHEDKNRVPFVK 242
F +K E+Y D + DLL ++ L + +D + V+
Sbjct: 122 SNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVE 168
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 166 bits (423), Expect = 3e-48
Identities = 51/218 (23%), Positives = 75/218 (34%), Gaps = 44/218 (20%)
Query: 36 ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNAT 95
E R+ + + AP + FD+VF P +
Sbjct: 37 EPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVFPPGSG 96
Query: 96 QEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNG 155
Q++V++E A +V L GY IFAYGQT SGKT TMEG G
Sbjct: 97 QDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG---------------- 139
Query: 156 TIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIY 214
DP +G+IPR + +F+ ++ + + SY EIY
Sbjct: 140 ---------------------DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIY 178
Query: 215 MDKIRDLLDVSKVN-----LSVHEDKNRVPFVKVKNLV 247
+ +RDLL + + V N
Sbjct: 179 NETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNAR 216
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 163 bits (415), Expect = 2e-47
Identities = 50/180 (27%), Positives = 76/180 (42%), Gaps = 52/180 (28%)
Query: 74 PAPQIGKGKFYLFDKVF--------KPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQT 125
G+ K + +D F + A Q+ V+ ++I+ + GYN IFAYGQT
Sbjct: 43 KGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQT 102
Query: 126 SSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIP 185
SGK++TM MG ++ G+IP
Sbjct: 103 GSGKSYTM-----------------------------------------MGTADQPGLIP 121
Query: 186 RIVNDIFNHIYQM-DENLEFIIKVSYFEIYMDKIRDLLD--VSKVNLSVHEDKNRVPFVK 242
R+ + +F + +E F ++VSY EIY +K+RDLLD S+ L V E P+V
Sbjct: 122 RLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVD 181
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 162 bits (412), Expect = 7e-47
Identities = 45/178 (25%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 65 RQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQ 124
K + + K ++FD VF +TQ +V++ K I+ L GYN T+ AYG
Sbjct: 55 HGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGA 114
Query: 125 TSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGII 184
T +GKTHTM +G ++ G++
Sbjct: 115 TGAGKTHTM-----------------------------------------LGSADEPGVM 133
Query: 185 PRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
+ ++ + ++ E VSY E+Y ++IRDLL S L+V ED + V
Sbjct: 134 YLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSG-PLAVREDTQKGVVVH 190
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 159 bits (405), Expect = 2e-45
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 75/271 (27%)
Query: 8 QYEALETALKEAKEGAMKDRKRYQYEALETALKEAKEG---AMKDRKRYQYEVDRIKEAV 64
+ AL T + ++ + E L+ KE + +RK V +++ +
Sbjct: 4 MHAALSTEVVHLRQ--RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61
Query: 65 R---------------------------QKNLARRGPAPQIGKGKFYLFDKVFKPNATQE 97
R + + A + + FD+VF P ++Q
Sbjct: 62 RVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQS 121
Query: 98 KVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTI 157
+++ + ++ L GYN IFAYGQT SGKT+TM+
Sbjct: 122 DIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD----------------------- 157
Query: 158 FAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIYMD 216
G P G+IPR V+ +F+ I + E+ IK ++ EIY +
Sbjct: 158 ------------------GVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNE 199
Query: 217 KIRDLLDVSKVNLSVHEDKNRVPFVKVKNLV 247
+ DLL + ++ + KN + V N+
Sbjct: 200 VLYDLLSNEQKDMEIRMAKNNKNDIYVSNIT 230
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 156 bits (396), Expect = 1e-44
Identities = 42/175 (24%), Positives = 61/175 (34%), Gaps = 55/175 (31%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
+ + FDK+F T V+ E +V L GYN IFAYGQT SGKT TM
Sbjct: 49 AQVHEFKFDKIFDQQDTNVDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFTMLN--- 104
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
GIIP ++ IFN I ++
Sbjct: 105 ----------------------------------------PGDGIIPSTISHIFNWINKL 124
Query: 199 -DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLS----------VHEDKNRVPFVK 242
+ ++ + + EIY + I DLL N H+ + + +
Sbjct: 125 KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 179
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 156 bits (396), Expect = 8e-44
Identities = 56/192 (29%), Positives = 79/192 (41%), Gaps = 56/192 (29%)
Query: 66 QKNLARRGPAPQIGKGKFYLFDKVF-------KPNATQEKVYDEAAKSIVSDVLAGYNGT 118
AR + ++ + K + FDK F + ATQE VYD + + GY+
Sbjct: 80 DFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTC 139
Query: 119 IFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDP 178
IFAYGQT SGK++TM MG P
Sbjct: 140 IFAYGQTGSGKSYTM-----------------------------------------MGTP 158
Query: 179 NKQGIIPRIVNDIFNHIYQMDE---NLEFIIKVSYFEIYMDKIRDLLDVS-----KVNLS 230
++ G+IPR D+F I + N+ + +KVSYFE+Y + +RDLL L
Sbjct: 159 DQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLK 218
Query: 231 VHEDKNRVPFVK 242
V E P+VK
Sbjct: 219 VRESPTEGPYVK 230
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 153 bits (390), Expect = 2e-43
Identities = 46/167 (27%), Positives = 64/167 (38%), Gaps = 37/167 (22%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
+ + + + FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G
Sbjct: 96 KYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 155
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196
+ + +GI D+F
Sbjct: 156 LSGKAQ-----------------------------------NASKGIYAMASRDVFLLKN 180
Query: 197 QM-DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
Q L + V++FEIY K+ DLL+ K L V ED + V
Sbjct: 181 QPCYRKLGLEVYVTFFEIYNGKLFDLLN-KKAKLRVLEDGKQQVQVV 226
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 153 bits (389), Expect = 5e-43
Identities = 47/167 (28%), Positives = 65/167 (38%), Gaps = 37/167 (22%)
Query: 77 QIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGV 136
+ + + + FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G
Sbjct: 116 KYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD 175
Query: 137 MGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIY 196
+ + +GI D+F
Sbjct: 176 LSGKS-----------------------------------QNASKGIYAMASRDVFLLKN 200
Query: 197 QM-DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVK 242
Q NL + V++FEIY K+ DLL+ K L V ED + V
Sbjct: 201 QPRYRNLNLEVYVTFFEIYNGKVFDLLN-KKAKLRVLEDSRQQVQVV 246
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 151 bits (385), Expect = 6e-43
Identities = 39/177 (22%), Positives = 68/177 (38%), Gaps = 57/177 (32%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
+ FD +F+P+ T +++++E + +V L GYN IFAYGQT SGKT+TM
Sbjct: 50 ILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA-- 106
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
G+IP ++ IF +
Sbjct: 107 -----------------------------------------GDGMIPMTLSHIFKWTANL 125
Query: 199 -DENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSV------------HEDKNRVPFVK 242
+ + ++ Y EIY + I DLL K + ++ H+ + + ++
Sbjct: 126 KERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYIT 182
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 150 bits (380), Expect = 9e-42
Identities = 53/278 (19%), Positives = 84/278 (30%), Gaps = 89/278 (32%)
Query: 8 QYEALETALKEAKEGAMKDRKRYQYEALETALKEAKE---GAMKDRKRYQYEVDRIKEAV 64
+ AL+ + KE + + + E +KE E R+ E+ ++ +
Sbjct: 4 KIAALKEKIAALKE--KIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61
Query: 65 R-----------------------------QKNLARRGPAPQIGKGKFYLFDKVFKPNAT 95
R + + FDK+F T
Sbjct: 62 RVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDT 121
Query: 96 QEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNG 155
V+ E +V L GYN IFAYGQT SGKT TM
Sbjct: 122 NVDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTFTMLN-------------------- 160
Query: 156 TIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM-DENLEFIIKVSYFEIY 214
GIIP ++ IFN I ++ + ++ + + EIY
Sbjct: 161 -----------------------PGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIY 197
Query: 215 MDKIRDLLDVSKVNLS----------VHEDKNRVPFVK 242
+ I DLL N H+ + + +
Sbjct: 198 NENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTIT 235
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 1e-10
Identities = 56/436 (12%), Positives = 128/436 (29%), Gaps = 108/436 (24%)
Query: 2 KDRKRYQYEALETALKEAKEGAMKDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIK 61
+ L + +E + +++ R Y+ L + +K + + Y + DR+
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKP-NATQEKVYDEAAKSIVSDVLAGYNGTIF 120
+ VF N ++ + Y + ++++ A +
Sbjct: 121 NDNQ-----------------------VFAKYNVSRLQPYLKLRQALLELRPAKN---VL 154
Query: 121 AYGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMG---- 176
G SGKT V V + IF + + ++ E V+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYK-------VQCKMDFKIF-W--LNLKNCNSPETVLEMLQK 204
Query: 177 -----DPNKQGIIPRIVNDIFNHIYQMDENLEFIIK-------------VSYFEI--YMD 216
DPN N I I+ + L ++K V + +
Sbjct: 205 LLYQIDPNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 217 ---KI----RD--LLDVSKVNLSVHE--DKNRVPFVK--VKNLVARCTSMESSQ-AEEHK 262
KI R + D + H D + + VK+L+ + E
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 263 K----AIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALR-------- 310
+ + E + A + + + +E ++ L
Sbjct: 324 TTNPRRL---SIIAE---SIRDGLATWDNWKHVNCDK--LTTIIESSLNVLEPAEYRKMF 375
Query: 311 EECA----KLKAAEQVTAV--SSKEKAEEKEKANEV--KVALEQQMDQLR----DVHQKQ 358
+ + + ++ K++ N++ +E+Q + ++ +
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 359 VAELRDEIADKQSMIT 374
+L +E A +S++
Sbjct: 436 KVKLENEYALHRSIVD 451
Score = 38.3 bits (88), Expect = 0.004
Identities = 37/278 (13%), Positives = 83/278 (29%), Gaps = 73/278 (26%)
Query: 1 MKDR----KRYQYEALETALKEAKEGAMKDRKRYQYEALETALKEAK--EGAMK----DR 50
K + L T ++ + R ++ L A + D
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 51 KRYQYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAA--KSIV 108
+ +V + + + +L + P + + + K+ +E A +SIV
Sbjct: 400 IKS--DVMVVVNKLHKYSLVEKQPKE----STISIPSIYLE---LKVKLENEYALHRSIV 450
Query: 109 S---------------DVLAGYNGTIFAY-GQTSSGKTHTMEGVMGDPNKQGIIPHVLAG 152
L Y +++ G H + + + V
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQY---FYSHIGH------HLKNIEHPE--RMTLFRMVFLD 499
Query: 153 YN---GTIFAYGQTSSGKTHTMEGVMGDPN--KQGIIP------RIVNDIFNHIYQMDEN 201
+ I T+ + ++ + K I R+VN I + + +++EN
Sbjct: 500 FRFLEQKIRHDS-TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVS--KVNLSVHEDKNR 237
L K DLL ++ + ++ E+ ++
Sbjct: 559 L-----------ICSKYTDLLRIALMAEDEAIFEEAHK 585
Score = 28.7 bits (63), Expect = 3.8
Identities = 26/170 (15%), Positives = 44/170 (25%), Gaps = 65/170 (38%)
Query: 2 KDRKRYQYE----ALETALKEAKEGAMKDRKRYQYEALETA------------------- 38
K K LE +K E A+ Y +T
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 39 --LKEAKEGAMKDRKRYQYEVD-R-IKEAVRQKNLARRGPAP------QIGKGKFYLFDK 88
LK + R + +D R +++ +R + A Q+ K Y+ D
Sbjct: 479 HHLKNIEHPERMTLFRMVF-LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 89 V------------FKPNATQ-------------------EKVYDEAAKSI 107
F P + E +++EA K +
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 54.7 bits (132), Expect = 3e-08
Identities = 17/151 (11%), Positives = 57/151 (37%), Gaps = 9/151 (5%)
Query: 228 NLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKS 287
+ + + K+ NL ++ + ++ E+E + + +
Sbjct: 936 KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995
Query: 288 LQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347
L++ + + + +K+++EE D + E +L + + ++ K + E+ + Q
Sbjct: 996 LRKELHQTQTEKKTIEEWADKYKHETEQLVSELK------EQNTLLKTEKEELNRRIHDQ 1049
Query: 348 MDQLRDVHQKQVAELRDEIADKQSMITELKE 378
++ + +L +E + + + +
Sbjct: 1050 AKEITE---TMEKKLVEETKQLELDLNDERL 1077
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/137 (15%), Positives = 49/137 (35%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K+K + K ++ ++++ E +M +L+ + K RS
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
E + EE + +E + K +E+ D+ + ++ V+E
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Query: 362 LRDEIADKQSMITELKE 378
L+++ ++ EL
Sbjct: 1028 LKEQNTLLKTEKEELNR 1044
Score = 50.1 bits (120), Expect = 8e-07
Identities = 23/138 (16%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Query: 242 KVKNLVARCTSMESSQAE-EHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKR 300
+K +V A+ E KK + + + L E ++ LQ + E + +
Sbjct: 886 TLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYK 945
Query: 301 SLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVA 360
SL E ++ L + + + EE + A ++L++++ +L +K++
Sbjct: 946 SLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL----RKELH 1001
Query: 361 ELRDEIADKQSMITELKE 378
+ + E + + K
Sbjct: 1002 QTQTEKKTIEEWADKYKH 1019
Score = 46.6 bits (111), Expect = 1e-05
Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 10/132 (7%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLL------LSHHEARMKSLQESMKEAENKKRSLEECV 306
+ KAI Y + + L ++ ++ ENK L+ +
Sbjct: 878 LARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKI 937
Query: 307 DALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEI 366
D +E L + E EK L ++ ++ +V L++EI
Sbjct: 938 DEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMSEEEAKN-ATNRVLSLQEEI 993
Query: 367 ADKQSMITELKE 378
A + + + +
Sbjct: 994 AKLRKELHQTQT 1005
Score = 37.8 bits (88), Expect = 0.007
Identities = 17/126 (13%), Positives = 47/126 (37%), Gaps = 8/126 (6%)
Query: 256 SQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDAL--REEC 313
+ + +Y+ L E + ++ R + L+ C + + E
Sbjct: 847 ALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKREL 906
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVA-LEQQMDQLRDVHQKQVAELRDEIADKQSM 372
KLK + S E+ ++ E K+ L++++D+ ++ + ++ + +
Sbjct: 907 KKLKIEAR-----SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961
Query: 373 ITELKE 378
+L+
Sbjct: 962 TEKLRS 967
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 53.3 bits (128), Expect = 8e-08
Identities = 18/137 (13%), Positives = 57/137 (41%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ R +++ + + ++ ++ E++L E + + +K+ E+
Sbjct: 935 RIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
+E+ + L +E L+ + E+ E+ + ++K E + +L +K+
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKS 1054
Query: 362 LRDEIADKQSMITELKE 378
++ K+ + E +
Sbjct: 1055 RQELEKIKRKLEGESSD 1071
Score = 50.2 bits (120), Expect = 7e-07
Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K KNL ES +E + + EK E + E L E + E + +
Sbjct: 1026 KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085
Query: 302 LEECVDALREECAKLKA-AEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVH---QK 357
L+ + EE A E T+ + + +E + + L++ ++ + +K
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS-DLQEDLESEKAARNKAEK 1144
Query: 358 QVAELRDEIADKQSMITELKE 378
Q +L +E+ ++ + + +
Sbjct: 1145 QKRDLSEELEALKTELEDTLD 1165
Score = 48.7 bits (116), Expect = 2e-06
Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Query: 244 KNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLE 303
K + + +E EE + + E + E + +++ + +++ LE
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLE 1010
Query: 304 ECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELR 363
E V L L E+ +K K + + +E++V L+ + ++ R +K +L
Sbjct: 1011 ERVSDLTTN---LAEEEEKAKNLTKLKNKHESMISELEVRLK-KEEKSRQELEKIKRKLE 1066
Query: 364 DEIADKQSMITELKE 378
E +D I EL+
Sbjct: 1067 GESSDLHEQIAELQA 1081
Score = 47.9 bits (114), Expect = 4e-06
Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 3/140 (2%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+++ A ++ + K + E ++ + K L+E + +
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDV---HQKQ 358
EE L + K ++ V K++ + +++ ++K LE + L + Q Q
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 359 VAELRDEIADKQSMITELKE 378
+AEL+ ++A K+ +
Sbjct: 1083 IAELKAQLAKKEEELQAALA 1102
Score = 46.8 bits (111), Expect = 9e-06
Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K++ E + K E E+ L E + E R + LQ K+ + +
Sbjct: 900 KLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
LEE ++ KL+ + K+ ++ + L ++ L +++V++
Sbjct: 960 LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL----EERVSD 1015
Query: 362 LRDEIADKQSMITELKE 378
L +A+++ L +
Sbjct: 1016 LTTNLAEEEEKAKNLTK 1032
Score = 46.4 bits (110), Expect = 1e-05
Identities = 26/177 (14%), Positives = 66/177 (37%), Gaps = 10/177 (5%)
Query: 205 IIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKA 264
++KV+ E M + L +K E + + K L ++ E +
Sbjct: 849 LLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELY 908
Query: 265 IEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTA 324
E E+ E + ++ ++E E + + L+ ++++ L+
Sbjct: 909 AEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE------ 962
Query: 325 VSSKEKAEEKEKANEVKVALEQQMDQLRD---VHQKQVAELRDEIADKQSMITELKE 378
+E+ ++K KV + ++ ++ D + + Q +L E + +++L
Sbjct: 963 -QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTT 1018
Score = 46.0 bits (109), Expect = 2e-05
Identities = 22/128 (17%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+ +L + +++ AE + + E+EL L ++ + + ++E E+
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
L+E +++ + K + K+K + E+ +K LE +D Q+
Sbjct: 1128 LQEDLESEKAARNKAE----------KQKRDLSEELEALKTELEDTLDTT-ATQQELRGS 1176
Query: 362 LRDEIADK 369
+ DK
Sbjct: 1177 DYKDDDDK 1184
Score = 46.0 bits (109), Expect = 2e-05
Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 16/145 (11%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
K+K + ME + K+ E+ + + L+ E + K+L + + E+
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAE-EKEKANEVKVALEQQMDQLRDVHQKQVA 360
LE + + +L+ K K E E +E L+ Q+ +L+ K+
Sbjct: 1044 LEVRLKKEEKSRQELEKI--------KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Query: 361 E-------LRDEIADKQSMITELKE 378
E L DE + K + + +++E
Sbjct: 1096 ELQAALARLEDETSQKNNALKKIRE 1120
Score = 45.2 bits (107), Expect = 3e-05
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 4/150 (2%)
Query: 229 LSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSL 288
+ + ED+N + K L R + + ++ AEE +KA K + ++S E R+K
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 289 QESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQM 348
++S +E E KR LE L E+ A+L+A K + +KE+ + +A +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIA----ELKAQLAKKEEELQAALARLEDE 1107
Query: 349 DQLRDVHQKQVAELRDEIADKQSMITELKE 378
++ K++ EL I+D Q + K
Sbjct: 1108 TSQKNNALKKIRELESHISDLQEDLESEKA 1137
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 8e-04
Identities = 48/302 (15%), Positives = 86/302 (28%), Gaps = 102/302 (33%)
Query: 24 M-KDRKRYQYEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ--KNLARRGPAPQIGK 80
M D Y+ + A ++ A D I + V NL K
Sbjct: 1631 MGMDL----YKTSKAA-QDVWNRA--DNHFKDTYGFSILDIVINNPVNLTIHFGGE---K 1680
Query: 81 GKF----Y---LFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNG----TIFAYGQ----- 124
GK Y +F+ + EK++ E + S G T F Q
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFT--QPALTL 1738
Query: 125 TSSGKTHTMEGVMGDPNKQGIIPH--VLAG-----YN------GTI---------FAYGQ 162
++ +G+IP AG Y + F G
Sbjct: 1739 MEKAAFEDLK-------SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 163 TSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDENLEFII-----KVSYF-EI--Y 214
T E + I P V F+ E L++++ + + EI Y
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFS-----QEALQYVVERVGKRTGWLVEIVNY 1846
Query: 215 ---------------MDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAE 259
+D + ++L+ K+ ++ ++++ S+ + E
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVLNFIKL--------QKIDIIELQ------KSLSLEEVE 1892
Query: 260 EH 261
H
Sbjct: 1893 GH 1894
Score = 29.6 bits (66), Expect = 2.0
Identities = 32/194 (16%), Positives = 56/194 (28%), Gaps = 64/194 (32%)
Query: 81 GKF--YLFDKVFKPNATQEKVYDEAAKSIV----SDVLAGYN-----GTIFAYGQTSSGK 129
GKF Y+ V Q +D+ + + L G + + T+ K
Sbjct: 62 GKFLGYVSSLVEPSKVGQ---FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 130 THTM-------EGVMGDPNKQG----IIPHVLAGYNGTIFA-YGQTSSGKTHTMEGVMGD 177
T + + P + + V G N + A +G G
Sbjct: 119 TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NAQLVAIFG--------------G- 162
Query: 178 PNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSK---VNLSVHED 234
QG +D F +E L + ++ Y + DL+ S L
Sbjct: 163 ---QGNT----DDYF------EE-LRDL-----YQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 235 KNRVPFVKVKNLVA 248
F + N++
Sbjct: 204 DAEKVFTQGLNILE 217
Score = 28.9 bits (64), Expect = 4.1
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 349 DQLRDVHQKQVAELRDEIA--DKQSMITEL 376
QL++ K + E + A D+ + EL
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 39.8 bits (92), Expect = 0.001
Identities = 29/160 (18%), Positives = 53/160 (33%), Gaps = 2/160 (1%)
Query: 208 VSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEY 267
V FE+ D D + K +N + V + A + +
Sbjct: 603 VFGFEMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAI 662
Query: 268 EKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSS 327
E H R++ QE+ E +K + + R+E +L+A +
Sbjct: 663 EITTNSQEAAAKHEAQRLE--QEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTG 720
Query: 328 KEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367
KAE + +A ++ E + Q + Q E E+
Sbjct: 721 NAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Score = 31.3 bits (70), Expect = 0.59
Identities = 21/115 (18%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
E ++ E S EA + S+ +A+ K ++L +A E K+
Sbjct: 706 LLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKV 765
Query: 317 KAAEQ--VTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIADK 369
+ E A E ++ ++ AN ++ + L + +A E+ K
Sbjct: 766 REMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Score = 30.5 bits (68), Expect = 1.1
Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 5/125 (4%)
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEA---RMKSLQESMKEAENKKRSLEECVDA 308
S E++ E ++ + + E + +L EA R + L+ + +
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727
Query: 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIAD 368
R E A+++ V K +A E E++ + + +L + + EL A
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELI--YARAQLELEVSKAQ 785
Query: 369 KQSMI 373
+ + +
Sbjct: 786 QLANV 790
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 2/110 (1%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEA-ENK 298
+ K++ S K E GE + L + + S+ + E N
Sbjct: 901 WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960
Query: 299 KRSLEECVD-ALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347
L E D ++ +K++ + + + E +K ++
Sbjct: 961 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.5 bits (81), Expect = 0.014
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 295 AENKKRSLE-ECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRD 353
A+ + + E E + REE + K +++ A S + E +EKA + LE+ + +
Sbjct: 75 AQADRLTQEPESIRKWREE--QRKRLQELDAASKVMEQEWREKAKK---DLEEWNQRQSE 129
Query: 354 VHQKQVAELRDEIADKQ 370
+K R IADK
Sbjct: 130 QVEKNKINNR--IADKA 144
Score = 30.5 bits (68), Expect = 0.59
Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 290 ESMKE--AENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347
ES+++ E +KR L+E + +K ++ + K+ E ++ +E +E+
Sbjct: 85 ESIRKWREEQRKR-LQE-----LDAASK-VMEQEWREKAKKDLEEWNQRQSE---QVEKN 134
Query: 348 MDQLRDVHQKQVAELRDEI 366
R + + +I
Sbjct: 135 KINNRIADKAFYQQPDADI 153
Score = 27.4 bits (60), Expect = 5.7
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKE 335
E + K LQE ++ ++ E EE + + +EQV + +K
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQ-RQSEQVEKNKINNRIADKA 144
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD,
FCPH, BRCT, hydrolase, BEF3, acylphosphate analog,
cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces
pombe}
Length = 442
Score = 35.4 bits (80), Expect = 0.027
Identities = 19/164 (11%), Positives = 44/164 (26%), Gaps = 5/164 (3%)
Query: 194 HIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSM 253
++ + NL ++ +F D L E + K + +
Sbjct: 163 DVWDWNPNLIKVVPYEFFVGIGDI-NSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINE 221
Query: 254 ESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREEC 313
E+ + E+ + +K +EA ++ L++
Sbjct: 222 ENEETPEYDS----SNSSYAQDSSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSE 277
Query: 314 AKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK 357
L + + + LE+ L+D+H
Sbjct: 278 RPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAV 321
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 35.3 bits (81), Expect = 0.033
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 4/106 (3%)
Query: 214 YMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGE 273
Y K+ L + L E+K +K + ESS+ A +++ E
Sbjct: 32 YQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLE 91
Query: 274 T----RLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAK 315
+ H++ ++ LQE K +L+E V L +C +
Sbjct: 92 EIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQE 137
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 34.3 bits (78), Expect = 0.052
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
E+ + E EKEL E + K Q+ K+ E+KK+SL++ V+A ++
Sbjct: 346 FVQRVKEKEAELKEAEKELHE------KFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQR 399
Query: 313 CAKLKAAEQVTAVSSKEKAEEKEK 336
+ + + + + +++K
Sbjct: 400 KTAAELLQSQGSQAGGSQTLKRDK 423
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 33.9 bits (78), Expect = 0.10
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 1/101 (0%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEA-ENK 298
+ K++ S K E GE + L + + S+ + E N
Sbjct: 893 WATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 952
Query: 299 KRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANE 339
L E D + + T ++ E+ + E
Sbjct: 953 VPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 29.6 bits (67), Expect = 0.19
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
++SL++ ++ + L+ V LR E A+LK
Sbjct: 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain,
phosphoprotein, protein transport, SH3 domain,
transport, transport protein; 2.08A {Homo sapiens} PDB:
3dyu_A 2raj_A 2rai_A 2rak_A*
Length = 366
Score = 32.4 bits (73), Expect = 0.20
Identities = 14/125 (11%), Positives = 39/125 (31%), Gaps = 5/125 (4%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
E + ++ + L E + + K A K + ++ V +
Sbjct: 242 YEEIASLVAEQPKKDLHFLMECNHEYKGFLGCFPDIIGTHKGAIEKVKESDKLVATSKIT 301
Query: 313 CAKLKAAEQVTAVSSKE-KAE----EKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIA 367
+ + ++ S +AE + + + ++Q ++ +LR ++
Sbjct: 302 LQDKQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQVQFYETIAEKLRQALS 361
Query: 368 DKQSM 372
M
Sbjct: 362 RFPVM 366
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.4 bits (71), Expect = 0.20
Identities = 18/97 (18%), Positives = 47/97 (48%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
+ L+E+++++E +++ LEE + +L +E L+ Q + + E ++ + K
Sbjct: 19 KEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK 78
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ LE ++ ++ + + + A K+ + E E
Sbjct: 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSE 115
Score = 29.9 bits (67), Expect = 0.65
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 256 SQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAK 315
AE K+ ++E + L EAR K L+E M +K L+ V A ++ A
Sbjct: 7 KSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLAD 66
Query: 316 LKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK------QVAELRDEIADK 369
AE+ K K + + K E+ LE + + ++ K + +EL+ +I D
Sbjct: 67 ---AEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123
Query: 370 QSMI 373
+ +
Sbjct: 124 ELTL 127
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA
complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F
2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Length = 62
Score = 28.9 bits (65), Expect = 0.36
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
R+ L+E +K + + L + LRE+ A+LK
Sbjct: 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 31.9 bits (72), Expect = 0.38
Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 11/126 (8%)
Query: 261 HKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAE 320
K E E E + L +++ K ++ KE E + +A E+ +
Sbjct: 96 QAKLKELEDEQRNELVRLKYND---KIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILN 152
Query: 321 QVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEI--------ADKQSM 372
+ +K EE + + AL++++ + V E RD+I ++ M
Sbjct: 153 KAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGM 212
Query: 373 ITELKE 378
E +
Sbjct: 213 QEEAIQ 218
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 30.4 bits (68), Expect = 0.97
Identities = 25/137 (18%), Positives = 49/137 (35%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
++K + E +K + E +L E + L+E +K N +S
Sbjct: 147 QLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKS 206
Query: 302 LEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAE 361
LE + ++ K + +V + KE E A LE+ +D L D Q +
Sbjct: 207 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 266
Query: 362 LRDEIADKQSMITELKE 378
+ + + ++
Sbjct: 267 YKAISEELDHALNDMTS 283
Score = 29.2 bits (65), Expect = 2.2
Identities = 25/164 (15%), Positives = 59/164 (35%)
Query: 215 MDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEHKKAIEYEKELGET 274
MD I+ + + K++ D+ K R +E KK E EL +
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 275 RLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEK 334
L + +++ ++ +AE SL + EE + + +E +
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAA 120
Query: 335 EKANEVKVALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+++ +E + + + + Q +L++ + + +E
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEE 164
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.6 bits (69), Expect = 1.1
Identities = 17/100 (17%), Positives = 36/100 (36%), Gaps = 6/100 (6%)
Query: 285 MKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVAL 344
+ + + + K+ LEE L KL+ E A++ + +
Sbjct: 1898 LDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQA 1957
Query: 345 EQQMDQLR------DVHQKQVAELRDEIADKQSMITELKE 378
Q++ Q+ ++ QK EL+ ++ + I K
Sbjct: 1958 NQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKV 1997
Score = 28.7 bits (64), Expect = 4.2
Identities = 11/120 (9%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 266 EYEKELGETRLLLSHHEARMKS----LQESMKEAENKKRSLEECVDALREECAKLKAAEQ 321
+ + E R L + + L+++ + ++ + SL + L + + +
Sbjct: 1903 QVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLK 1962
Query: 322 VTAVSSKEKAEEKEKANEVKVALEQQ---MDQLRDVHQKQVAELRDEIADKQSMITELKE 378
+ +++ A E++V L+ + + + + + ++ +
Sbjct: 1963 QMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENA 2022
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A
{Thermococcus SP}
Length = 526
Score = 29.8 bits (66), Expect = 1.8
Identities = 16/103 (15%), Positives = 42/103 (40%)
Query: 243 VKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSL 302
+ +++ ++ + ++ K + + + + + +A + SLQE + EAE
Sbjct: 377 AEPMISVLSNTYTVMKDQDVKNLIDLYKKKDREKINATTKAMINSLQEKIDEAEQLLAKA 436
Query: 303 EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
+ + E A+ E A++ +KA +++ L
Sbjct: 437 KGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLN 479
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 27.1 bits (60), Expect = 2.0
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
+LQ + E++K +L+ + L +E KL+
Sbjct: 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLE 57
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics,
unknown function, PSI-2, protein structure initiative;
2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Length = 171
Score = 28.8 bits (64), Expect = 2.2
Identities = 10/71 (14%), Positives = 25/71 (35%)
Query: 300 RSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQV 359
+ + AL E + ++ A ++ K +A++ L + +L D
Sbjct: 13 ADIRQAEGALAEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKELEDGVATFA 72
Query: 360 AELRDEIADKQ 370
+ E+ +
Sbjct: 73 TLNKTEMFKDR 83
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 29.5 bits (65), Expect = 2.3
Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 252 SMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSL-------QESMKEAENKKRSLEE 304
SM + + + E EKE+ R+ +A K L ++ M++ K+RS +E
Sbjct: 470 SMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ---KERSYQE 526
Query: 305 CVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRD 364
+ L E+ + + +E+E+ +K L++Q L++ QK+ +++
Sbjct: 527 HLKQLTEKMENDR----------VQLLKEQERTLALK--LQEQEQLLKEGFQKESRIMKN 574
Query: 365 EIADKQSMITELKE 378
EI D Q+ + K
Sbjct: 575 EIQDLQTKMRRRKA 588
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.1 bits (64), Expect = 2.6
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 96 QEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGD 139
Q + + I +++ N + S K + VM +
Sbjct: 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68
Score = 27.2 bits (59), Expect = 9.8
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 145 IIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGD 177
I +++ N + S K + VM +
Sbjct: 36 IYDSLMSSQNKLFYITNADDSTKFQLVNDVMDE 68
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 28.5 bits (63), Expect = 2.6
Identities = 11/82 (13%), Positives = 31/82 (37%), Gaps = 5/82 (6%)
Query: 286 KSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
L ++ + L E + + +E + + + + E + EVK ++
Sbjct: 45 LKLLDNWDSVTSTFSKLREQLGPVTQE-----FWDNLEKETEGLRQEMSKDLEEVKAKVQ 99
Query: 346 QQMDQLRDVHQKQVAELRDEIA 367
+D + Q+++ R ++
Sbjct: 100 PYLDDFQKKWQEEMELYRQKVE 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 28.1 bits (63), Expect = 3.3
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 86 FDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTH 131
D N +Q + + V + + G GKTH
Sbjct: 9 LDTYHPKNVSQNRAL-LTIRVFVHNFNPEEGKGLTFVGSPGVGKTH 53
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 28.7 bits (64), Expect = 3.3
Identities = 11/80 (13%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 54 QYEVDRIKEAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA 113
+ V+ K+A + + + + NA++ + + A V +
Sbjct: 94 KELVEAQKQAAISERIQLVSLPKSY---RHIHLSDIDVNNASRMEAF-SAILDFVEQYPS 149
Query: 114 GYNGTIFAYGQTSSGKTHTM 133
++ YG GK++ +
Sbjct: 150 AEQKGLYLYGDMGIGKSYLL 169
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 28.2 bits (62), Expect = 3.5
Identities = 24/127 (18%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 242 KVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRS 301
+ L + ++ + +K+ + + +L E + + + + S
Sbjct: 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITS 101
Query: 302 LEECVDALREECAKL----KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK 357
L+E V L+ K+ K A+ + S KEK + N +L+Q+++Q + H+
Sbjct: 102 LQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNEHKV 161
Query: 358 QVAELRD 364
A L D
Sbjct: 162 TKARLTD 168
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 4.2
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 15/44 (34%)
Query: 289 QESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAE 332
++++K+ + SL KL A + A++ K E
Sbjct: 19 KQALKKLQA---SL------------KLYADDSAPALAIKATME 47
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 26.2 bits (58), Expect = 4.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 283 ARMKSLQESMKEAENKKRSLEECVDALREECAKLK 317
A ++L KE E K +L+E D+L +E LK
Sbjct: 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLK 57
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9;
2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Length = 243
Score = 28.2 bits (62), Expect = 4.4
Identities = 11/86 (12%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 286 KSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
L ++ + L E + + +E + + + + E + EVK ++
Sbjct: 44 LKLLDNWDSVTSTFSKLREQLGPVTQE-----FWDNLEKETEGLRQEMSKDLEEVKAKVQ 98
Query: 346 QQMDQLRDVHQKQVAELRDEIADKQS 371
+D + Q+++ R ++ ++
Sbjct: 99 PYLDDFQKKWQEEMELYRQKVEPLRA 124
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 28.1 bits (62), Expect = 5.4
Identities = 14/76 (18%), Positives = 22/76 (28%), Gaps = 5/76 (6%)
Query: 4 RKRYQYEALETALKEAKEGAMKDRKRY---QYEALETALKEAKEGAMKDRKRYQYEVDRI 60
A E L E E M++ Y + + + DR RY + +
Sbjct: 307 AAFLFPAARERTLAEVTEAVMREEPANWAKYYHGSAEEQRLQRHFSYSDRIRYYWPHPKA 366
Query: 61 KEAVRQ--KNLARRGP 74
AV + L
Sbjct: 367 AAAVDELMSLLDGVAI 382
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 27.2 bits (60), Expect = 5.6
Identities = 21/97 (21%), Positives = 41/97 (42%)
Query: 282 EARMKSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVK 341
E + L+E +K N +SLE + ++ K + +V + KE E A
Sbjct: 41 EGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 100
Query: 342 VALEQQMDQLRDVHQKQVAELRDEIADKQSMITELKE 378
LE+ +D L D Q + + + + + +++E
Sbjct: 101 TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEE 137
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 27.4 bits (60), Expect = 5.7
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 286 KSLQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALE 345
+ E+MKE + K LEE + + EE +++ +A +V+ L
Sbjct: 62 ALMDETMKELKAYKSELEEQLTPVAEE-----TRARLSKELQAAQARLGADMEDVRGRLV 116
Query: 346 QQMDQLRDVHQKQVAELRDEIA 367
Q +++ + + ELR +A
Sbjct: 117 QYRGEVQAMLGQSTEELRVRLA 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 27.6 bits (62), Expect = 6.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 114 GYNGTIFAYGQTSSGKTHTM 133
G I+ +G SG+TH +
Sbjct: 51 GVQ-AIYLWGPVKSGRTHLI 69
Score = 27.6 bits (62), Expect = 6.6
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 152 GYNGTIFAYGQTSSGKTHTM 171
G I+ +G SG+TH +
Sbjct: 51 GVQ-AIYLWGPVKSGRTHLI 69
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 25.8 bits (57), Expect = 7.2
Identities = 11/78 (14%), Positives = 26/78 (33%), Gaps = 17/78 (21%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKK 299
F +++ V ++S+A+ KA EY ++ ++ +
Sbjct: 21 FHSLRDSVPSLQGEKASRAQILDKATEY-----------------IQYMRRKNHTHQQDI 63
Query: 300 RSLEECVDALREECAKLK 317
L+ L ++ L
Sbjct: 64 DDLKRQNALLEQQVRALG 81
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 27.3 bits (60), Expect = 7.3
Identities = 19/130 (14%), Positives = 46/130 (35%), Gaps = 19/130 (14%)
Query: 259 EEHKKAIEYEKELGETRLLLSHH------EARMKSLQESMKE----AENKKRSLEECVDA 308
E +K I+ + G+ RLL H E+ +LQ + L+E
Sbjct: 58 ELKEKKIKELQNAGD-RLLREDHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAAY 116
Query: 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQVAELRDEIAD 368
+ + K + + K + + A +++ L Q + ++++ +
Sbjct: 117 FQF----FSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQDAQ----DEKEQLNE 168
Query: 369 KQSMITELKE 378
+ ++ L +
Sbjct: 169 YKGHLSGLAK 178
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 25.9 bits (58), Expect = 7.4
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 8 QYEALETALKEAKEGAMKDRKRYQY--EALETALKEAKE 44
E+LE ++E +E + YQ L+ ++ KE
Sbjct: 9 TNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKE 47
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.4 bits (61), Expect = 7.8
Identities = 8/74 (10%), Positives = 25/74 (33%)
Query: 289 QESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQM 348
+ ++ ++ + + ++ + E AEE A LE ++
Sbjct: 16 EPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAELEAKL 75
Query: 349 DQLRDVHQKQVAEL 362
++ + + A+
Sbjct: 76 SEMEHRYLRLYADF 89
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A
{Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Length = 290
Score = 27.4 bits (61), Expect = 8.6
Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 259 EEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLKA 318
E K+ ++ LG A +S + ++K+ ++ ++++R +
Sbjct: 88 EYVKRLLDDCHLLGAPVFAGLTFCAWPQS---PPLDMKDKRPYVDRAIESVRRVIKVAED 144
Query: 319 A 319
Sbjct: 145 Y 145
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.0 bits (59), Expect = 8.8
Identities = 22/128 (17%), Positives = 53/128 (41%), Gaps = 6/128 (4%)
Query: 257 QAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKL 316
QA+ + E E + + ++ L++ + + K L + V L + L
Sbjct: 62 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL 121
Query: 317 KAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQK------QVAELRDEIADKQ 370
+ A++ T +S ++ + +A E LE ++D+ + + +LR E+A ++
Sbjct: 122 ERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181
Query: 371 SMITELKE 378
++
Sbjct: 182 RQQEVTRK 189
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 9.5
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 9/84 (10%)
Query: 253 MESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREE 312
E E+ +K + E EL HE K+L+ KE E K+R E+ +
Sbjct: 342 FEMKVKEKVQKLKDSEAELQRR------HEQMKKNLEAQHKELEEKRRQFEDEKANWEAQ 395
Query: 313 CAKLKAAEQVTAVSSKEKAEEKEK 336
L EQ + + EK ++K K
Sbjct: 396 QRIL---EQQNSSRTLEKNKKKGK 416
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 27.1 bits (61), Expect = 9.9
Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 309 LREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQL-RDVHQKQVAELRDEIA 367
+R+E + E + ++ + LE M Q + ++ A LRDEI
Sbjct: 582 VRKEVRAVIRPEGYEEAPLEADLSGEDLRERIA-ELELAMWQAAEALDFERAARLRDEIR 640
Query: 368 DKQSMITELKE 378
++ + ++
Sbjct: 641 ALEARLQGVRA 651
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.128 0.346
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,717,138
Number of extensions: 361827
Number of successful extensions: 1510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 260
Length of query: 378
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 283
Effective length of database: 4,049,298
Effective search space: 1145951334
Effective search space used: 1145951334
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)