RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5719
(378 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 99 bits (248), Expect = 2e-24
Identities = 103/238 (43%), Positives = 125/238 (52%), Gaps = 38/238 (15%)
Query: 78 IGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVM 137
+ K Y FD+VF+ + +QE+VY++ AK IV
Sbjct: 38 VIASKPYAFDRVFQSSTSQEQVYNDCAKKIVK---------------------------- 69
Query: 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197
VL GYNGTIFAYGQTSSGKTHTMEG + DP GIIPRIV DIFN+IY
Sbjct: 70 ----------DVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYS 119
Query: 198 MDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQ 257
MDENLEF IKVSYFEIY+DKIRDLLDVSK NLSVHEDKNRVP+VK C+ E
Sbjct: 120 MDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMD 179
Query: 258 AEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAK 315
+ K+ + H + ++++ + E K VD E
Sbjct: 180 TIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVS 237
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 88.5 bits (218), Expect = 2e-20
Identities = 42/176 (23%), Positives = 63/176 (35%), Gaps = 37/176 (21%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLA-GYNGTIFAYGQTSSGKTHTMEGVM 137
+ ++ DKVF VY+ K ++ D+ G + FAYGQT SGKT+TM
Sbjct: 47 IERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML--- 103
Query: 138 GDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ 197
G + GI DIF +
Sbjct: 104 ---------------------------------GSQPYGQSDTPGIFQYAAGDIFTFLNI 130
Query: 198 MDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSM 253
D++ I +S++EIY K+ DLL K+ ++ K V +K L
Sbjct: 131 YDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAALENGKKEVVVKDLKILRVLTKEE 186
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 88.1 bits (217), Expect = 4e-20
Identities = 78/281 (27%), Positives = 117/281 (41%), Gaps = 50/281 (17%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
+ FD+VF + Q ++D + K V D+L GYNGT+FAYGQT +GK++TM G D
Sbjct: 46 GSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDD- 104
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQMDEN 201
P+ +G+IPRIV IF I N
Sbjct: 105 ------------------------------------PDGRGVIPRIVEQIFTSILSSAAN 128
Query: 202 LEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKVKNLVARCTSMESSQAEEH 261
+E+ ++VSY EIYM++IRDLL NL VHE+KNR +VK + + E
Sbjct: 129 IEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRGVYVKG---LLEIYVSSVQEVYEV 185
Query: 262 KKAIEYEKELGETRLLLSHHEARM---KSLQESMKEAENKKRSLEECVDALREECAKLKA 318
+ + + T + + ++ + E + K VD E
Sbjct: 186 MRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGSEKVG--- 242
Query: 319 AEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQV 359
+S + EE +K N+ AL ++ L D V
Sbjct: 243 ----KTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHV 279
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 87.3 bits (215), Expect = 7e-20
Identities = 59/188 (31%), Positives = 79/188 (42%), Gaps = 35/188 (18%)
Query: 62 EAVRQKNLARRGPAPQIGKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFA 121
+ VR++ R G K Y FD VF + Q VY I+ +V+ GYN TIFA
Sbjct: 27 DPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVIMGYNCTIFA 86
Query: 122 YGQTSSGKTHTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQ 181
YGQT +GKT TMEG + LA
Sbjct: 87 YGQTGTGKTFTMEGERSPNEEYTWEEDPLA------------------------------ 116
Query: 182 GIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVS---KVNLSVHEDKNRV 238
GIIPR ++ IF + EF +KVS EIY +++ DLL+ S L + +D
Sbjct: 117 GIIPRTLHQIFEKLTDNGT--EFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 174
Query: 239 PFVKVKNL 246
V +K L
Sbjct: 175 RGVIIKGL 182
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 68.4 bits (166), Expect = 2e-13
Identities = 42/164 (25%), Positives = 62/164 (37%), Gaps = 36/164 (21%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
+ + + FD F A+ E VY A+ +V + G T FAYGQT SGKTHTM G +
Sbjct: 77 LENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLS 136
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHI-YQ 197
+ +GI D+F
Sbjct: 137 GKS-----------------------------------QNASKGIYAMASRDVFLLKNQP 161
Query: 198 MDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFV 241
NL + V++FEIY K+ DLL+ + + + +V V
Sbjct: 162 RYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVV 205
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 66.9 bits (162), Expect = 6e-13
Identities = 48/173 (27%), Positives = 78/173 (45%), Gaps = 49/173 (28%)
Query: 79 GKGKFYLFDKVFKPN--------ATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKT 130
K + FD + + A+Q++VY + + ++ GYN IFAYGQT +GK+
Sbjct: 42 ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKS 101
Query: 131 HTMEGVMGDPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVND 190
+TM G + ++QGIIP++ D
Sbjct: 102 YTMMGKQ---------------------------------------EKDQQGIIPQLCED 122
Query: 191 IFNHIYQMD-ENLEFIIKVSYFEIYMDKIRDLL-DVSKVNLSVHEDKNRVPFV 241
+F+ I +N+ + ++VSY EIY +++RDLL +K NL V E P+V
Sbjct: 123 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYV 175
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 64.6 bits (156), Expect = 3e-12
Identities = 50/291 (17%), Positives = 86/291 (29%), Gaps = 62/291 (21%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
+ + FDK+F T V+ E +
Sbjct: 47 AQVHEFKFDKIFDQQDTNVDVFKEVGQ--------------------------------- 73
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
++ L GYN IFAYGQT SGKT TM GIIP ++ IFN I ++
Sbjct: 74 ------LVQSSLDGYNVCIFAYGQTGSGKTFTM-----LNPGDGIIPSTISHIFNWINKL 122
Query: 199 -DENLEFIIKVSYFEIYMDKIRDLLD----------VSKVNLSVHEDKNRVPFVKVKNLV 247
+ ++ + + EIY + I DLL + + H+ + + +
Sbjct: 123 KTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSC 182
Query: 248 ARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKKRSLEECVD 307
+ + + + H + L S + VD
Sbjct: 183 KLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYGTLNLVD 242
Query: 308 ALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQMDQLRDVHQKQ 358
E + ++ E + N+ L + L +
Sbjct: 243 LAGSERINVSQVVG-------DRLRETQNINKSLSCLGDVIHALGQPDSTK 286
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 60.7 bits (146), Expect = 7e-11
Identities = 44/157 (28%), Positives = 69/157 (43%), Gaps = 43/157 (27%)
Query: 82 KFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPN 141
+ + FD+VF P ++Q +++ +
Sbjct: 92 QIFSFDQVFHPLSSQSDIFEMVSP------------------------------------ 115
Query: 142 KQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQ-MDE 200
+I L GYN IFAYGQT SGKT+TM G P G+IPR V+ +F+ I +
Sbjct: 116 ---LIQSALDGYNICIFAYGQTGSGKTYTM---DGVPESVGVIPRTVDLLFDSIRGYRNL 169
Query: 201 NLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNR 237
E+ IK ++ EIY + + DLL + ++ + KN
Sbjct: 170 GWEYEIKATFLEIYNEVLYDLLSNEQKDMEIRMAKNN 206
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 59.6 bits (143), Expect = 2e-10
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 42/144 (29%)
Query: 79 GKGKFYLFDKVFKPNATQEKVYDEAAKSIVSDVLAGYNGTIFAYGQTSSGKTHTMEGVMG 138
K K +++D+VF NATQ+ V+++
Sbjct: 39 DKAKQHMYDRVFDGNATQDDVFEDTK---------------------------------- 64
Query: 139 DPNKQGIIPHVLAGYNGTIFAYGQTSSGKTHTMEGVMGDPNKQGIIPRIVNDIFNHIYQM 198
++ + GYN IFAYGQT SGKT T+ G + G+ PR ++++F + +
Sbjct: 65 -----YLVQSAVDGYNVCIFAYGQTGSGKTFTI---YGADSNPGLTPRAMSELFRIMKKD 116
Query: 199 DENLEFIIKVSYFEIYMDKIRDLL 222
F +K E+Y D + DLL
Sbjct: 117 SNKFSFSLKAYMVELYQDTLVDLL 140
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 30.9 bits (70), Expect = 0.10
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 288 LQESMKEAENKKRSLEECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANEVKVALEQQ 347
+ E+MKE + K LEE + + EE +++ +A +V+ L Q
Sbjct: 43 MDETMKELKAYKSELEEQLTPVAEE-----TRARLSKELQAAQARLGADMEDVRGRLVQY 97
Query: 348 MDQLRDVHQKQVAELRDEIA 367
+++ + + ELR +A
Sbjct: 98 RGEVQAMLGQSTEELRVRLA 117
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein,
ArcB {Escherichia coli [TaxId: 562]}
Length = 118
Score = 28.8 bits (64), Expect = 0.50
Identities = 15/109 (13%), Positives = 42/109 (38%), Gaps = 10/109 (9%)
Query: 266 EYEKELGETRL--LLSHHEARMKSLQESMKEAENKKRSLEECVDALREECAKLK-AAEQV 322
+Y + +G + L+ E M ++ + + EE K+K AA V
Sbjct: 14 QYLELVGPKLITDGLAVFEKMMPGYVSVLESNLTAQD-----KKGIVEEGHKIKGAAGSV 68
Query: 323 TAVSSKEKAEEKEKA--NEVKVALEQQMDQLRDVHQKQVAELRDEIADK 369
++ ++ + + + + ++++++ + V L+ +A
Sbjct: 69 GLRHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKA 117
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 27.8 bits (61), Expect = 1.7
Identities = 9/73 (12%), Positives = 22/73 (30%)
Query: 184 IPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKIRDLLDVSKVNLSVHEDKNRVPFVKV 243
P +V+ I E + +VS F +++ ++ D + + +
Sbjct: 18 RPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINIIT 77
Query: 244 KNLVARCTSMESS 256
L +
Sbjct: 78 GALKLYFRDLPIP 90
>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980
{Cryptosporidium parvum [TaxId: 5807]}
Length = 223
Score = 26.8 bits (59), Expect = 4.0
Identities = 13/85 (15%), Positives = 29/85 (34%), Gaps = 19/85 (22%)
Query: 285 MKSLQESMKEAENKKRSL-----EECVDALREECAKLKAAEQVTAVSSKEKAEEKEKANE 339
+K L ES +N L V ++R +K+ E+ K +++ N
Sbjct: 4 IKVLTESSDFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEE--------KLRKEKSLNN 55
Query: 340 VKVALEQQMDQLRDVHQKQVAELRD 364
+ + + D+ + +
Sbjct: 56 EFIQV------IEDIKRDFEESILL 74
>d1dt0a2 d.44.1.1 (A:84-197) Fe superoxide dismutase (FeSOD)
{Pseudomonas ovalis [TaxId: 303]}
Length = 114
Score = 25.7 bits (56), Expect = 4.3
Identities = 10/44 (22%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 175 MGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKI 218
G P G P + D++ H Y +D + Y E + + +
Sbjct: 58 AGCPLTIGDTPLLTCDVWEHAYYIDYRNL---RPKYVEAFWNLV 98
>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
GatZ {Escherichia coli [TaxId: 562]}
Length = 420
Score = 26.7 bits (59), Expect = 4.6
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 16 LKEAKEGAMKDRKRY---QYEALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ--KNLA 70
E M D +Y Y ++ DR RY + RIK +V NL
Sbjct: 311 CLAVIEEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLQ 370
Query: 71 RR 72
Sbjct: 371 GV 372
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 24.8 bits (54), Expect = 5.7
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 240 FVKVKNLVARCTSMESSQAEEHKKAIEYEKELGETRLLLSHHEARMKSLQESMKEAENKK 299
F +++ V ++S+A+ KA EY + + R H+ + L+ E +
Sbjct: 21 FHSLRDSVPSLQGEKASRAQILDKATEYIQYM---RRKNHTHQQDIDDLKRQNALLEQQV 77
Query: 300 RSLEEC 305
R+L C
Sbjct: 78 RALGGC 83
>d1my6a2 d.44.1.1 (A:89-198) Fe superoxide dismutase (FeSOD)
{Thermosynechococcus elongatus [TaxId: 146786]}
Length = 110
Score = 25.3 bits (55), Expect = 6.2
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 175 MGDPNKQGIIPRIVNDIFNHIYQMD-ENLEFIIKVSYFEIYMDKI 218
+P G +P + D++ H Y +D +N + + + +++++
Sbjct: 58 AENPLVHGQVPLLTIDVWEHAYYLDYQNR----RPDFIDNFLNQL 98
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD)
{Bacillus halodenitrificans [TaxId: 1482]}
Length = 111
Score = 25.4 bits (55), Expect = 6.3
Identities = 7/44 (15%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 175 MGDPNKQGIIPRIVNDIFNHIYQMDENLEFIIKVSYFEIYMDKI 218
+P +G P + D++ H Y + + + Y + + +
Sbjct: 58 QDNPLMEGKKPILGLDVWEHAYYLKYQNK---RPDYISAFWNVV 98
>d1vkza3 d.142.1.2 (A:94-313) Glycinamide ribonucleotide synthetase
(GAR-syn), domain 2 {Thermotoga maritima [TaxId: 2336]}
Length = 220
Score = 25.8 bits (55), Expect = 7.4
Identities = 6/33 (18%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 175 MGDPNKQGIIPRIVNDIFNHIYQ--MDENLEFI 205
+GDP + I+ N + + +E +
Sbjct: 185 LGDPETEVIVTLNPEGFVNAVLEGYRGGKMEPV 217
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.128 0.346
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,334,221
Number of extensions: 64530
Number of successful extensions: 270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 249
Number of HSP's successfully gapped: 67
Length of query: 378
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 291
Effective length of database: 1,213,086
Effective search space: 353008026
Effective search space used: 353008026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (24.8 bits)