Query psy5720
Match_columns 153
No_of_seqs 84 out of 86
Neff 3.2
Searched_HMMs 46136
Date Sat Aug 17 00:54:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11559 ADIP: Afadin- and alp 96.6 0.035 7.6E-07 42.3 10.1 77 20-96 60-150 (151)
2 PF07989 Microtub_assoc: Micro 94.2 0.13 2.8E-06 36.7 5.2 55 17-71 19-74 (75)
3 PF09304 Cortex-I_coil: Cortex 94.1 1.9 4.2E-05 33.3 11.6 79 16-94 13-92 (107)
4 PRK11637 AmiB activator; Provi 93.9 1.4 3.1E-05 38.8 12.0 84 17-100 52-135 (428)
5 PF08232 Striatin: Striatin fa 92.7 0.39 8.6E-06 37.1 6.0 37 18-75 31-67 (134)
6 PF10498 IFT57: Intra-flagella 92.6 1.2 2.7E-05 39.7 9.7 76 26-101 220-295 (359)
7 TIGR02449 conserved hypothetic 92.4 0.32 7E-06 34.3 4.7 32 22-53 3-34 (65)
8 PF11594 Med28: Mediator compl 92.4 0.74 1.6E-05 35.4 7.0 60 16-75 17-77 (106)
9 PRK11637 AmiB activator; Provi 91.5 2.9 6.3E-05 36.9 10.7 12 17-28 59-70 (428)
10 PF00038 Filament: Intermediat 91.2 6.3 0.00014 32.7 11.8 78 20-97 196-273 (312)
11 TIGR03752 conj_TIGR03752 integ 87.5 5.2 0.00011 37.6 9.5 75 21-95 61-139 (472)
12 COG1579 Zn-ribbon protein, pos 86.8 6.3 0.00014 33.8 9.0 73 22-96 31-106 (239)
13 PRK10884 SH3 domain-containing 86.6 14 0.00029 30.8 10.6 78 15-95 89-169 (206)
14 PF00170 bZIP_1: bZIP transcri 85.1 2.9 6.3E-05 27.9 5.0 39 17-55 24-62 (64)
15 PLN02939 transferase, transfer 85.0 8.4 0.00018 39.1 10.2 80 19-98 300-395 (977)
16 PF06005 DUF904: Protein of un 84.8 4.3 9.3E-05 28.8 6.0 60 27-97 5-64 (72)
17 KOG1853|consensus 84.6 30 0.00065 31.1 12.4 91 19-114 91-197 (333)
18 PF11559 ADIP: Afadin- and alp 84.0 17 0.00036 27.7 9.6 60 35-98 68-127 (151)
19 PF07888 CALCOCO1: Calcium bin 83.6 20 0.00044 34.2 11.6 54 17-70 183-236 (546)
20 PF05483 SCP-1: Synaptonemal c 82.4 10 0.00022 37.7 9.3 71 19-89 594-664 (786)
21 KOG0972|consensus 82.1 13 0.00028 34.0 9.2 74 28-101 229-302 (384)
22 KOG0243|consensus 81.7 17 0.00037 37.3 10.8 61 17-77 453-513 (1041)
23 COG4026 Uncharacterized protei 81.4 13 0.00027 32.9 8.7 67 25-95 134-200 (290)
24 PF12240 Angiomotin_C: Angiomo 81.2 8 0.00017 32.9 7.2 48 23-70 32-80 (205)
25 PF05384 DegS: Sensor protein 80.6 24 0.00052 28.5 9.5 76 21-98 8-86 (159)
26 PF04102 SlyX: SlyX; InterPro 80.5 3.1 6.7E-05 28.7 3.8 42 19-67 11-52 (69)
27 KOG0964|consensus 80.1 12 0.00025 38.7 9.0 78 22-99 393-494 (1200)
28 TIGR02894 DNA_bind_RsfA transc 80.1 18 0.00038 29.8 8.6 36 18-54 83-118 (161)
29 PRK00295 hypothetical protein; 79.7 5 0.00011 27.9 4.7 15 20-34 13-27 (68)
30 PF06005 DUF904: Protein of un 79.5 19 0.00042 25.5 8.0 46 21-66 20-65 (72)
31 PF05103 DivIVA: DivIVA protei 79.2 0.69 1.5E-05 33.7 0.3 64 28-91 27-90 (131)
32 PHA02562 46 endonuclease subun 78.8 29 0.00063 30.9 10.3 61 17-77 335-395 (562)
33 PF06657 Cep57_MT_bd: Centroso 78.4 8.6 0.00019 27.5 5.7 46 21-66 19-76 (79)
34 PF13094 CENP-Q: CENP-Q, a CEN 77.8 14 0.0003 28.5 7.1 49 27-75 21-76 (160)
35 PRK00736 hypothetical protein; 76.9 6.8 0.00015 27.2 4.7 42 19-67 12-53 (68)
36 COG2433 Uncharacterized conser 76.8 12 0.00026 36.5 7.8 62 15-76 418-496 (652)
37 TIGR02168 SMC_prok_B chromosom 76.4 38 0.00083 32.1 10.8 58 10-68 163-220 (1179)
38 PRK09039 hypothetical protein; 74.8 34 0.00074 30.1 9.6 62 18-79 115-176 (343)
39 PF08317 Spc7: Spc7 kinetochor 74.7 43 0.00093 28.9 10.0 56 43-98 226-288 (325)
40 COG1196 Smc Chromosome segrega 74.6 44 0.00094 33.7 11.2 49 22-70 698-746 (1163)
41 PRK04325 hypothetical protein; 73.9 8.7 0.00019 27.1 4.7 15 20-34 17-31 (74)
42 PRK02119 hypothetical protein; 73.6 8.9 0.00019 27.1 4.7 14 20-33 17-30 (73)
43 PF10473 CENP-F_leu_zip: Leuci 73.6 44 0.00095 26.6 10.2 58 17-74 50-107 (140)
44 TIGR03185 DNA_S_dndD DNA sulfu 73.4 46 0.001 31.2 10.6 44 17-60 207-250 (650)
45 PRK13729 conjugal transfer pil 73.1 12 0.00026 35.2 6.6 25 46-70 89-113 (475)
46 PF07926 TPR_MLP1_2: TPR/MLP1/ 73.1 38 0.00082 25.6 11.2 76 23-98 42-117 (132)
47 TIGR02169 SMC_prok_A chromosom 71.4 76 0.0016 30.4 11.6 25 49-73 863-887 (1164)
48 TIGR03185 DNA_S_dndD DNA sulfu 71.3 39 0.00084 31.7 9.6 55 44-98 227-281 (650)
49 PRK04406 hypothetical protein; 71.3 11 0.00023 26.9 4.7 45 51-99 15-59 (75)
50 TIGR02169 SMC_prok_A chromosom 71.3 67 0.0015 30.8 11.2 15 18-32 673-687 (1164)
51 PRK04778 septation ring format 71.0 44 0.00095 31.1 9.7 55 22-76 306-370 (569)
52 PF00261 Tropomyosin: Tropomyo 70.7 59 0.0013 26.8 10.4 77 19-95 92-185 (237)
53 KOG0161|consensus 70.4 59 0.0013 35.5 11.6 82 17-98 1426-1510(1930)
54 PF13863 DUF4200: Domain of un 70.1 39 0.00085 24.5 10.4 70 16-88 4-73 (126)
55 PF15058 Speriolin_N: Sperioli 69.9 8.4 0.00018 32.7 4.5 24 26-49 5-28 (200)
56 COG3334 Uncharacterized conser 69.8 35 0.00075 28.7 8.0 55 43-98 73-131 (192)
57 PF04156 IncA: IncA protein; 69.7 50 0.0011 25.6 11.7 63 17-79 86-148 (191)
58 PF07888 CALCOCO1: Calcium bin 69.6 76 0.0016 30.5 11.1 52 19-70 136-194 (546)
59 smart00787 Spc7 Spc7 kinetocho 69.2 43 0.00093 29.4 8.9 59 40-98 225-283 (312)
60 PRK15422 septal ring assembly 68.8 45 0.00097 24.7 8.5 66 28-97 6-71 (79)
61 KOG0804|consensus 68.1 73 0.0016 30.4 10.5 45 31-75 359-403 (493)
62 PF07889 DUF1664: Protein of u 68.0 34 0.00073 26.8 7.2 31 45-75 66-96 (126)
63 TIGR03752 conj_TIGR03752 integ 67.7 53 0.0012 31.1 9.6 63 36-98 62-135 (472)
64 PF06156 DUF972: Protein of un 67.2 13 0.00028 28.2 4.6 21 78-98 35-55 (107)
65 PF15272 BBP1_C: Spindle pole 67.2 63 0.0014 27.2 9.1 46 57-102 110-155 (196)
66 PF12128 DUF3584: Protein of u 67.0 80 0.0017 32.1 11.3 87 15-101 242-335 (1201)
67 PF11932 DUF3450: Protein of u 66.9 71 0.0015 26.3 10.4 56 18-73 55-110 (251)
68 PRK09039 hypothetical protein; 66.9 82 0.0018 27.8 10.2 65 17-88 135-199 (343)
69 PRK10884 SH3 domain-containing 66.4 60 0.0013 27.0 8.8 21 77-97 137-157 (206)
70 PRK03918 chromosome segregatio 66.4 88 0.0019 29.6 10.8 25 48-72 674-698 (880)
71 PF04156 IncA: IncA protein; 66.3 60 0.0013 25.2 11.6 44 24-67 107-150 (191)
72 COG2433 Uncharacterized conser 66.2 56 0.0012 32.2 9.6 60 15-74 446-508 (652)
73 PF15254 CCDC14: Coiled-coil d 65.7 41 0.00089 34.0 8.8 71 20-97 435-505 (861)
74 PF06785 UPF0242: Uncharacteri 65.7 44 0.00095 31.0 8.4 54 36-93 102-155 (401)
75 PF14523 Syntaxin_2: Syntaxin- 65.7 43 0.00093 23.3 9.9 73 24-96 8-95 (102)
76 PRK02224 chromosome segregatio 65.6 67 0.0015 30.6 10.0 53 43-95 366-421 (880)
77 smart00787 Spc7 Spc7 kinetocho 65.0 84 0.0018 27.6 9.8 13 84-96 230-242 (312)
78 KOG0239|consensus 64.9 65 0.0014 31.3 9.9 83 13-96 235-317 (670)
79 PF07716 bZIP_2: Basic region 64.8 13 0.00029 24.1 3.8 31 17-47 23-53 (54)
80 COG4942 Membrane-bound metallo 64.2 1.3E+02 0.0027 28.2 11.9 47 29-75 38-87 (420)
81 PF04111 APG6: Autophagy prote 64.1 99 0.0021 27.0 10.5 43 14-56 45-87 (314)
82 PF04849 HAP1_N: HAP1 N-termin 64.0 42 0.0009 30.0 7.8 62 28-93 162-241 (306)
83 PF07246 Phlebovirus_NSM: Phle 63.9 27 0.00059 30.7 6.6 60 19-79 175-234 (264)
84 PHA02562 46 endonuclease subun 63.6 65 0.0014 28.7 9.0 46 28-73 162-207 (562)
85 COG3883 Uncharacterized protei 63.5 36 0.00077 29.9 7.2 33 39-71 72-104 (265)
86 PF10234 Cluap1: Clusterin-ass 63.5 72 0.0016 27.9 9.1 27 69-95 215-241 (267)
87 PF13870 DUF4201: Domain of un 63.1 71 0.0015 24.9 8.7 23 75-97 141-163 (177)
88 PF08537 NBP1: Fungal Nap bind 62.4 20 0.00044 32.3 5.6 49 19-74 175-223 (323)
89 PF12329 TMF_DNA_bd: TATA elem 62.0 53 0.0011 23.1 7.6 56 20-75 13-68 (74)
90 PF10211 Ax_dynein_light: Axon 61.4 87 0.0019 25.4 11.1 61 35-98 122-182 (189)
91 smart00338 BRLZ basic region l 61.2 23 0.00051 23.5 4.6 37 18-54 25-61 (65)
92 PF14257 DUF4349: Domain of un 61.0 25 0.00053 29.0 5.6 57 43-101 128-184 (262)
93 TIGR02209 ftsL_broad cell divi 61.0 29 0.00063 23.6 5.1 34 19-52 24-57 (85)
94 COG1196 Smc Chromosome segrega 60.9 1.1E+02 0.0024 30.9 11.0 60 18-77 715-774 (1163)
95 PRK14127 cell division protein 60.7 12 0.00026 28.6 3.5 38 28-65 32-69 (109)
96 PF10186 Atg14: UV radiation r 60.5 88 0.0019 25.2 11.2 44 35-78 65-108 (302)
97 KOG0971|consensus 60.1 67 0.0014 33.5 9.2 53 19-71 462-528 (1243)
98 KOG0933|consensus 60.0 70 0.0015 33.4 9.4 73 21-95 724-803 (1174)
99 PF08826 DMPK_coil: DMPK coile 60.0 38 0.00082 23.5 5.5 16 81-96 41-56 (61)
100 PF02183 HALZ: Homeobox associ 59.6 26 0.00056 22.9 4.4 34 22-55 8-41 (45)
101 KOG0963|consensus 59.5 1.3E+02 0.0027 29.7 10.7 15 18-32 248-262 (629)
102 TIGR02132 phaR_Bmeg polyhydrox 59.4 1E+02 0.0022 26.1 8.9 51 20-70 87-137 (189)
103 PF10473 CENP-F_leu_zip: Leuci 59.2 89 0.0019 24.8 11.1 74 18-95 23-96 (140)
104 PF10482 CtIP_N: Tumour-suppre 59.0 70 0.0015 25.3 7.4 69 27-95 36-119 (120)
105 PF10779 XhlA: Haemolysin XhlA 58.3 42 0.0009 23.1 5.5 47 44-94 3-49 (71)
106 PRK00846 hypothetical protein; 58.3 27 0.00058 25.4 4.7 53 44-100 10-62 (77)
107 PF08653 DASH_Dam1: DASH compl 58.2 15 0.00033 25.4 3.3 26 20-45 13-38 (58)
108 PRK13169 DNA replication intia 57.6 25 0.00055 26.9 4.7 34 24-57 20-53 (110)
109 PF12718 Tropomyosin_1: Tropom 57.2 91 0.002 24.3 9.9 54 26-79 14-67 (143)
110 PLN02939 transferase, transfer 56.4 1.3E+02 0.0028 31.0 10.5 86 17-102 238-347 (977)
111 PF08317 Spc7: Spc7 kinetochor 56.3 1.3E+02 0.0029 25.9 10.2 78 21-98 165-249 (325)
112 KOG2129|consensus 56.1 1.1E+02 0.0024 29.4 9.4 76 15-90 249-335 (552)
113 PF05377 FlaC_arch: Flagella a 55.6 23 0.0005 24.4 3.8 37 20-56 1-37 (55)
114 PF13040 DUF3901: Protein of u 55.5 20 0.00044 23.2 3.3 34 62-99 4-37 (40)
115 KOG2495|consensus 55.3 7.5 0.00016 36.8 1.8 21 130-150 206-229 (491)
116 KOG1962|consensus 55.2 76 0.0016 27.1 7.6 54 38-95 149-202 (216)
117 COG3879 Uncharacterized protei 55.2 53 0.0012 28.6 6.8 54 43-96 53-106 (247)
118 PF10168 Nup88: Nuclear pore c 55.1 83 0.0018 30.8 8.8 15 81-95 634-648 (717)
119 KOG4593|consensus 54.9 2.1E+02 0.0044 28.7 11.3 76 17-95 60-135 (716)
120 PRK15396 murein lipoprotein; P 54.3 57 0.0012 23.7 5.9 32 61-92 46-77 (78)
121 PF10212 TTKRSYEDQ: Predicted 54.2 2.1E+02 0.0045 27.6 11.0 79 21-100 415-501 (518)
122 PF00038 Filament: Intermediat 54.1 1.3E+02 0.0027 25.0 11.0 82 15-96 50-134 (312)
123 PF10168 Nup88: Nuclear pore c 53.7 1E+02 0.0022 30.2 9.1 29 72-100 632-660 (717)
124 PF04880 NUDE_C: NUDE protein, 53.1 29 0.00064 28.3 4.7 46 49-95 2-47 (166)
125 PF07798 DUF1640: Protein of u 52.7 1.1E+02 0.0025 24.1 11.2 28 38-65 78-105 (177)
126 PRK14011 prefoldin subunit alp 52.4 48 0.001 26.2 5.7 39 21-59 90-128 (144)
127 PRK13922 rod shape-determining 52.2 32 0.00069 28.5 4.9 22 35-56 71-92 (276)
128 KOG4552|consensus 52.2 1.2E+02 0.0025 26.8 8.4 52 40-93 67-120 (272)
129 KOG1853|consensus 52.1 1.6E+02 0.0036 26.6 9.5 35 22-56 48-82 (333)
130 PF11221 Med21: Subunit 21 of 52.0 1.1E+02 0.0023 23.7 7.5 75 23-97 66-140 (144)
131 TIGR01690 ICE_RAQPRD integrati 51.4 80 0.0017 23.9 6.5 37 78-115 56-92 (94)
132 PHA03158 hypothetical protein; 51.3 19 0.00041 31.4 3.5 37 41-77 234-270 (273)
133 PF05791 Bacillus_HBL: Bacillu 50.8 45 0.00098 26.7 5.4 52 27-78 129-180 (184)
134 PF10267 Tmemb_cc2: Predicted 50.2 2E+02 0.0044 26.4 10.0 87 16-102 209-299 (395)
135 TIGR02231 conserved hypothetic 49.2 93 0.002 28.3 7.7 49 48-100 125-173 (525)
136 KOG3850|consensus 48.7 1.7E+02 0.0038 27.6 9.4 71 18-91 305-377 (455)
137 KOG2896|consensus 48.7 1.2E+02 0.0027 28.0 8.3 16 106-121 182-197 (377)
138 PF12777 MT: Microtubule-bindi 48.7 1.3E+02 0.0029 26.1 8.3 16 80-95 264-279 (344)
139 PF04849 HAP1_N: HAP1 N-termin 48.6 1.3E+02 0.0027 27.1 8.2 36 14-49 229-264 (306)
140 PF04728 LPP: Lipoprotein leuc 48.4 90 0.0019 21.6 6.2 51 20-91 4-54 (56)
141 PF14662 CCDC155: Coiled-coil 48.3 1.7E+02 0.0037 24.8 10.0 71 24-95 6-76 (193)
142 PF14193 DUF4315: Domain of un 48.1 33 0.00071 25.1 3.8 32 44-75 5-36 (83)
143 PF04799 Fzo_mitofusin: fzo-li 47.8 1.4E+02 0.0031 24.7 7.9 51 37-96 116-168 (171)
144 PF06936 Selenoprotein_S: Sele 47.4 1E+02 0.0023 25.5 7.1 27 110-139 158-184 (190)
145 PRK06663 flagellar hook-associ 47.4 2.1E+02 0.0046 25.6 10.5 82 17-98 10-125 (419)
146 PF09755 DUF2046: Uncharacteri 47.3 2.2E+02 0.0047 25.7 9.9 55 24-79 111-181 (310)
147 KOG0996|consensus 47.2 1.7E+02 0.0038 31.0 9.9 75 19-93 405-479 (1293)
148 PF00261 Tropomyosin: Tropomyo 46.9 1.6E+02 0.0035 24.2 11.6 48 51-98 166-216 (237)
149 KOG1937|consensus 46.9 1.4E+02 0.003 28.8 8.5 76 19-95 345-426 (521)
150 PF09686 Plasmid_RAQPRD: Plasm 46.8 1.1E+02 0.0024 22.3 6.8 35 64-98 21-63 (81)
151 COG3074 Uncharacterized protei 46.7 1.2E+02 0.0025 22.5 8.3 65 28-97 6-71 (79)
152 KOG2077|consensus 46.5 52 0.0011 32.7 5.9 21 60-80 356-376 (832)
153 PF13747 DUF4164: Domain of un 46.3 1.1E+02 0.0025 22.2 6.7 46 49-95 17-62 (89)
154 PRK12718 flgL flagellar hook-a 45.9 1.2E+02 0.0027 28.5 8.1 49 50-98 67-124 (510)
155 PF05531 NPV_P10: Nucleopolyhe 45.8 76 0.0016 23.1 5.4 41 31-75 20-63 (75)
156 COG3599 DivIVA Cell division i 45.6 1.8E+02 0.0038 24.5 8.3 27 25-51 36-62 (212)
157 PF08614 ATG16: Autophagy prot 45.6 95 0.0021 24.8 6.5 19 18-36 73-91 (194)
158 KOG0718|consensus 45.0 49 0.0011 31.9 5.4 56 18-84 402-457 (546)
159 PF04065 Not3: Not1 N-terminal 44.9 85 0.0018 26.8 6.4 44 49-97 165-208 (233)
160 cd07671 F-BAR_PSTPIP1 The F-BA 44.8 1.9E+02 0.0041 24.3 9.5 73 19-94 60-139 (242)
161 PF15619 Lebercilin: Ciliary p 44.6 1.8E+02 0.0038 24.0 10.7 56 23-79 97-157 (194)
162 KOG3564|consensus 44.5 1.4E+02 0.0031 29.0 8.4 50 45-101 54-113 (604)
163 PF10805 DUF2730: Protein of u 44.3 1.3E+02 0.0028 22.3 7.0 28 43-70 68-95 (106)
164 PF12777 MT: Microtubule-bindi 44.3 2E+02 0.0044 25.0 8.8 16 80-95 292-307 (344)
165 PF13815 Dzip-like_N: Iguana/D 43.8 1.3E+02 0.0029 22.3 7.4 49 21-76 61-109 (118)
166 PF01920 Prefoldin_2: Prefoldi 43.6 67 0.0014 22.2 4.8 26 19-44 19-44 (106)
167 PF08581 Tup_N: Tup N-terminal 43.6 1.2E+02 0.0027 21.8 9.8 72 28-99 6-77 (79)
168 PF11471 Sugarporin_N: Maltopo 43.3 50 0.0011 22.7 4.0 14 62-75 33-46 (60)
169 KOG0104|consensus 43.2 21 0.00046 36.0 2.9 74 12-86 261-338 (902)
170 PF03962 Mnd1: Mnd1 family; I 43.2 1.8E+02 0.0039 23.6 7.9 70 19-93 62-131 (188)
171 PF10498 IFT57: Intra-flagella 42.8 2.5E+02 0.0055 25.2 9.5 71 25-99 251-321 (359)
172 PRK14161 heat shock protein Gr 42.8 1.2E+02 0.0027 24.7 6.8 15 79-93 51-65 (178)
173 PF08361 TetR_C_2: MAATS-type 42.6 47 0.001 24.3 4.0 33 43-75 30-67 (121)
174 PF10481 CENP-F_N: Cenp-F N-te 42.3 2.2E+02 0.0049 25.7 8.8 82 12-97 11-127 (307)
175 PF03961 DUF342: Protein of un 42.2 1.2E+02 0.0026 27.2 7.3 25 74-98 384-408 (451)
176 PF15456 Uds1: Up-regulated Du 42.1 67 0.0015 24.9 5.0 39 41-80 23-61 (124)
177 PF12329 TMF_DNA_bd: TATA elem 42.1 1.2E+02 0.0026 21.3 6.8 55 43-97 15-72 (74)
178 PF13935 Ead_Ea22: Ead/Ea22-li 42.1 1.6E+02 0.0034 22.6 7.4 22 42-63 92-113 (139)
179 COG4942 Membrane-bound metallo 41.9 3E+02 0.0065 25.8 10.4 62 18-79 44-105 (420)
180 PF15070 GOLGA2L5: Putative go 41.8 3.3E+02 0.0073 26.3 10.8 89 11-99 76-180 (617)
181 TIGR00219 mreC rod shape-deter 41.3 60 0.0013 27.8 5.0 34 23-57 57-90 (283)
182 KOG4001|consensus 41.2 2.5E+02 0.0054 24.7 8.8 73 19-101 178-250 (259)
183 KOG4674|consensus 41.1 3E+02 0.0064 30.5 10.8 76 20-95 739-814 (1822)
184 PF05565 Sipho_Gp157: Siphovir 40.9 1.2E+02 0.0026 23.8 6.4 43 55-97 41-86 (162)
185 PF12709 Kinetocho_Slk19: Cent 40.7 58 0.0012 24.3 4.2 32 18-49 33-72 (87)
186 TIGR00998 8a0101 efflux pump m 40.5 2.1E+02 0.0046 23.6 10.7 12 21-32 82-93 (334)
187 PF14643 DUF4455: Domain of un 40.2 2.9E+02 0.0063 25.2 11.0 81 16-99 320-404 (473)
188 PRK15422 septal ring assembly 39.8 72 0.0016 23.6 4.5 25 34-58 47-71 (79)
189 TIGR02894 DNA_bind_RsfA transc 39.5 1.4E+02 0.003 24.6 6.6 27 44-70 101-127 (161)
190 PF12711 Kinesin-relat_1: Kine 39.5 28 0.0006 25.8 2.4 36 60-95 2-40 (86)
191 PF05837 CENP-H: Centromere pr 39.4 1.6E+02 0.0034 21.8 9.5 47 15-61 6-52 (106)
192 PF04977 DivIC: Septum formati 39.4 65 0.0014 21.2 4.0 6 40-45 38-43 (80)
193 PF10458 Val_tRNA-synt_C: Valy 39.3 1.2E+02 0.0026 20.4 6.1 15 82-96 49-63 (66)
194 smart00503 SynN Syntaxin N-ter 39.3 1.3E+02 0.0029 21.0 10.7 54 18-71 14-74 (117)
195 cd00089 HR1 Protein kinase C-r 39.2 1.2E+02 0.0026 20.5 7.4 57 17-74 7-69 (72)
196 cd07605 I-BAR_IMD Inverse (I)- 39.1 2.4E+02 0.0051 23.8 9.8 43 56-98 158-201 (223)
197 PF07544 Med9: RNA polymerase 39.0 1.4E+02 0.003 21.2 6.8 55 19-77 28-82 (83)
198 PF15188 CCDC-167: Coiled-coil 38.9 71 0.0015 23.6 4.4 48 47-95 5-52 (85)
199 PHA02629 A-type inclusion body 38.6 45 0.00099 23.4 3.2 25 46-70 32-56 (61)
200 PF13851 GAS: Growth-arrest sp 38.5 2.2E+02 0.0048 23.3 9.6 36 65-100 129-164 (201)
201 PF04728 LPP: Lipoprotein leuc 38.4 1.3E+02 0.0029 20.8 6.2 13 60-72 16-28 (56)
202 PF09726 Macoilin: Transmembra 38.2 4E+02 0.0087 26.2 11.2 25 48-72 489-513 (697)
203 TIGR00606 rad50 rad50. This fa 38.2 4.7E+02 0.01 27.0 11.5 14 82-95 937-950 (1311)
204 KOG0999|consensus 38.0 1.6E+02 0.0034 29.4 7.7 16 17-32 105-120 (772)
205 PF09325 Vps5: Vps5 C terminal 37.9 2E+02 0.0043 22.6 8.0 41 59-99 161-201 (236)
206 PF11471 Sugarporin_N: Maltopo 37.9 59 0.0013 22.3 3.7 30 44-73 29-58 (60)
207 PRK05729 valS valyl-tRNA synth 37.8 1.1E+02 0.0025 29.9 6.8 54 44-97 808-871 (874)
208 KOG3876|consensus 37.8 31 0.00067 31.2 2.8 19 19-39 282-300 (341)
209 KOG4196|consensus 37.8 1.1E+02 0.0024 24.7 5.7 36 58-98 65-100 (135)
210 COG4467 Regulator of replicati 37.6 75 0.0016 25.0 4.6 31 28-58 24-54 (114)
211 PF12711 Kinesin-relat_1: Kine 37.4 87 0.0019 23.2 4.7 33 21-53 5-37 (86)
212 KOG0642|consensus 37.4 32 0.00068 33.3 3.0 35 17-72 46-80 (577)
213 PF12072 DUF3552: Domain of un 37.3 2.2E+02 0.0048 23.0 9.0 50 36-85 67-116 (201)
214 KOG0161|consensus 37.3 3.6E+02 0.0079 29.9 10.8 14 24-37 976-989 (1930)
215 PRK10920 putative uroporphyrin 37.3 1.9E+02 0.0041 26.4 7.8 55 17-71 65-123 (390)
216 PF07324 DGCR6: DiGeorge syndr 37.2 2.5E+02 0.0055 23.7 9.7 89 8-98 9-100 (196)
217 KOG0994|consensus 37.2 4.3E+02 0.0092 28.9 10.9 63 17-79 1561-1637(1758)
218 PF04568 IATP: Mitochondrial A 36.5 65 0.0014 24.4 4.0 36 21-56 64-99 (100)
219 PF15035 Rootletin: Ciliary ro 36.1 2E+02 0.0043 23.5 7.0 47 22-68 84-130 (182)
220 PF02388 FemAB: FemAB family; 35.8 2.4E+02 0.0051 25.1 8.0 23 51-73 270-292 (406)
221 KOG0980|consensus 35.6 4.5E+02 0.0097 27.4 10.6 40 15-54 420-459 (980)
222 KOG1899|consensus 35.5 2.3E+02 0.0049 28.7 8.4 72 6-91 98-169 (861)
223 PRK14692 lagellar hook-associa 35.5 4.7E+02 0.01 26.2 11.0 82 17-98 9-124 (749)
224 PRK02119 hypothetical protein; 35.3 1.6E+02 0.0034 20.7 8.5 47 53-99 8-57 (73)
225 PF03961 DUF342: Protein of un 35.3 1.3E+02 0.0027 27.1 6.3 28 71-98 374-401 (451)
226 PF07989 Microtub_assoc: Micro 35.3 1.6E+02 0.0035 20.8 7.6 60 36-98 10-69 (75)
227 PF04999 FtsL: Cell division p 35.3 83 0.0018 22.2 4.2 36 18-53 34-69 (97)
228 KOG0996|consensus 35.1 2.9E+02 0.0063 29.5 9.4 47 47-93 942-988 (1293)
229 KOG3915|consensus 35.0 2.8E+02 0.0061 27.1 8.7 52 27-79 515-566 (641)
230 PRK13922 rod shape-determining 34.9 71 0.0015 26.4 4.4 12 84-95 98-109 (276)
231 COG1730 GIM5 Predicted prefold 34.7 2.4E+02 0.0052 22.6 7.1 18 21-38 96-113 (145)
232 PF00804 Syntaxin: Syntaxin; 34.7 1.4E+02 0.0031 20.0 9.2 37 18-54 13-52 (103)
233 PF00170 bZIP_1: bZIP transcri 34.6 73 0.0016 21.0 3.6 29 27-55 27-55 (64)
234 COG1957 URH1 Inosine-uridine n 34.4 20 0.00043 31.8 1.1 14 138-151 143-156 (311)
235 COG1382 GimC Prefoldin, chaper 34.4 1.8E+02 0.0038 22.8 6.2 41 50-101 73-113 (119)
236 PF04380 BMFP: Membrane fusoge 34.3 1.6E+02 0.0036 20.7 5.6 27 46-72 49-75 (79)
237 PF07195 FliD_C: Flagellar hoo 34.2 2.6E+02 0.0056 22.8 8.2 54 36-89 181-235 (239)
238 PF15397 DUF4618: Domain of un 34.2 3.2E+02 0.007 23.9 10.2 76 18-93 119-200 (258)
239 PF15070 GOLGA2L5: Putative go 34.2 3.3E+02 0.007 26.4 9.1 60 20-79 51-126 (617)
240 PRK14158 heat shock protein Gr 34.1 1.9E+02 0.0041 24.1 6.7 29 10-38 31-59 (194)
241 PF12474 PKK: Polo kinase kina 33.9 2.3E+02 0.0051 22.2 7.7 67 20-92 20-87 (142)
242 KOG3156|consensus 33.8 1.7E+02 0.0037 25.3 6.5 23 32-54 93-115 (220)
243 PRK05892 nucleoside diphosphat 33.7 1.1E+02 0.0024 24.2 5.1 11 23-33 15-25 (158)
244 KOG1151|consensus 33.6 1.6E+02 0.0036 29.0 7.0 50 15-64 225-278 (775)
245 PRK10636 putative ABC transpor 33.5 1.3E+02 0.0027 28.4 6.2 31 42-72 558-588 (638)
246 PF05667 DUF812: Protein of un 33.5 4.5E+02 0.0097 25.4 10.8 45 16-60 325-369 (594)
247 PF12718 Tropomyosin_1: Tropom 33.4 2.3E+02 0.005 22.0 10.8 16 18-33 41-56 (143)
248 TIGR00606 rad50 rad50. This fa 33.3 3.4E+02 0.0074 27.9 9.5 72 28-99 579-652 (1311)
249 KOG0249|consensus 32.9 1.7E+02 0.0036 29.9 7.1 75 22-96 94-187 (916)
250 PF06120 Phage_HK97_TLTM: Tail 32.6 3.6E+02 0.0078 24.0 11.7 66 13-78 82-172 (301)
251 PF10481 CENP-F_N: Cenp-F N-te 32.5 3E+02 0.0066 24.9 8.1 31 38-75 23-53 (307)
252 PF13093 FTA4: Kinetochore com 32.4 1.3E+02 0.0029 25.0 5.6 60 37-96 139-208 (213)
253 PF15136 UPF0449: Uncharacteri 32.3 1.3E+02 0.0027 23.0 5.0 37 54-90 60-96 (97)
254 PRK09866 hypothetical protein; 32.3 5.4E+02 0.012 26.0 10.6 23 17-39 451-473 (741)
255 PRK06975 bifunctional uroporph 32.2 2.3E+02 0.005 27.1 7.8 24 47-70 385-408 (656)
256 PF05010 TACC: Transforming ac 32.2 3.1E+02 0.0066 23.1 8.0 58 40-97 110-172 (207)
257 KOG0962|consensus 31.9 3.9E+02 0.0084 28.6 9.7 59 17-79 197-255 (1294)
258 PF04102 SlyX: SlyX; InterPro 31.9 1.6E+02 0.0035 20.1 5.1 47 49-99 6-52 (69)
259 KOG4674|consensus 31.6 4.3E+02 0.0094 29.3 10.2 76 18-94 58-137 (1822)
260 PRK01156 chromosome segregatio 31.6 4.9E+02 0.011 25.2 10.3 48 23-70 671-718 (895)
261 PF10226 DUF2216: Uncharacteri 31.5 70 0.0015 27.2 3.8 18 45-62 106-123 (195)
262 TIGR01541 tape_meas_lam_C phag 31.3 3.8E+02 0.0082 23.8 10.2 11 83-93 116-126 (332)
263 PF11932 DUF3450: Protein of u 31.1 3E+02 0.0065 22.6 9.6 33 40-72 70-102 (251)
264 TIGR01069 mutS2 MutS2 family p 31.1 5.3E+02 0.011 25.4 10.4 10 66-75 563-572 (771)
265 KOG1937|consensus 31.0 1.9E+02 0.0041 27.9 6.9 53 37-97 466-520 (521)
266 PRK15471 chain length determin 31.0 2.5E+02 0.0054 24.7 7.3 55 42-115 164-218 (325)
267 PRK06342 transcription elongat 30.8 1.1E+02 0.0023 24.5 4.6 10 22-31 37-46 (160)
268 TIGR00293 prefoldin, archaeal 30.7 98 0.0021 22.6 4.1 18 21-38 88-105 (126)
269 PF09731 Mitofilin: Mitochondr 30.6 4.3E+02 0.0093 24.3 10.7 17 17-33 256-272 (582)
270 TIGR00219 mreC rod shape-deter 30.6 1E+02 0.0022 26.4 4.8 14 84-97 96-109 (283)
271 PF10018 Med4: Vitamin-D-recep 30.6 2.2E+02 0.0047 22.8 6.4 50 24-74 14-63 (188)
272 COG1315 Uncharacterized conser 30.6 1.4E+02 0.0031 28.9 6.0 74 16-98 414-487 (543)
273 KOG3540|consensus 30.6 5.3E+02 0.011 25.4 9.7 51 16-70 251-301 (615)
274 PRK03598 putative efflux pump 30.5 3.3E+02 0.0071 22.9 10.2 15 84-98 183-197 (331)
275 PRK00409 recombination and DNA 30.4 5.4E+02 0.012 25.4 10.2 7 111-117 635-641 (782)
276 PRK04863 mukB cell division pr 30.4 7.2E+02 0.016 26.8 11.5 40 20-59 301-340 (1486)
277 PRK08027 flgL flagellar hook-a 30.4 3.5E+02 0.0077 23.2 8.1 44 55-98 72-124 (317)
278 PLN02943 aminoacyl-tRNA ligase 30.3 1.7E+02 0.0038 29.3 6.9 55 44-98 886-950 (958)
279 PRK14160 heat shock protein Gr 30.2 2.5E+02 0.0054 23.7 6.9 11 81-91 95-105 (211)
280 PF04111 APG6: Autophagy prote 29.9 3.8E+02 0.0082 23.4 10.7 73 19-95 43-115 (314)
281 PF15619 Lebercilin: Ciliary p 29.7 3.2E+02 0.0069 22.5 11.6 17 80-96 119-135 (194)
282 PRK10803 tol-pal system protei 29.5 2.3E+02 0.005 23.9 6.6 39 17-55 38-76 (263)
283 PF06160 EzrA: Septation ring 29.5 4.4E+02 0.0096 24.7 9.0 54 43-100 382-435 (560)
284 PF07334 IFP_35_N: Interferon- 29.4 43 0.00094 24.4 2.0 17 37-53 4-20 (76)
285 PF07851 TMPIT: TMPIT-like pro 29.3 3.4E+02 0.0074 24.5 8.0 61 18-78 17-85 (330)
286 KOG0963|consensus 29.3 1.7E+02 0.0038 28.8 6.5 111 29-146 372-485 (629)
287 PF02524 KID: KID repeat; Int 29.2 14 0.0003 18.4 -0.4 10 20-29 1-10 (11)
288 KOG2391|consensus 29.1 2.8E+02 0.0061 25.7 7.4 44 50-93 217-260 (365)
289 PRK06569 F0F1 ATP synthase sub 28.5 3.2E+02 0.0069 22.1 7.5 44 50-93 33-76 (155)
290 PRK12805 flagellin; Provisiona 28.4 3.7E+02 0.0079 22.8 10.1 49 52-100 69-126 (287)
291 PF11219 DUF3014: Protein of u 28.2 27 0.00058 28.3 0.8 18 23-40 123-140 (158)
292 KOG1510|consensus 28.2 1.5E+02 0.0032 24.1 4.9 37 10-46 82-118 (139)
293 PRK12705 hypothetical protein; 28.1 5.3E+02 0.011 24.5 9.7 71 18-91 87-162 (508)
294 PRK02224 chromosome segregatio 27.8 5.5E+02 0.012 24.6 11.3 10 61-70 321-330 (880)
295 PF02183 HALZ: Homeobox associ 27.6 1.6E+02 0.0035 19.1 4.3 27 70-96 17-43 (45)
296 KOG4005|consensus 27.6 2E+02 0.0044 25.7 6.1 43 54-96 100-142 (292)
297 PRK00846 hypothetical protein; 27.6 2.4E+02 0.0053 20.4 6.9 14 20-33 21-34 (77)
298 PF10359 Fmp27_WPPW: RNA pol I 27.5 1.3E+02 0.0029 27.5 5.2 33 42-74 195-227 (475)
299 PF09311 Rab5-bind: Rabaptin-l 27.5 36 0.00078 27.2 1.4 57 19-75 15-71 (181)
300 PF05278 PEARLI-4: Arabidopsis 27.3 4.4E+02 0.0095 23.3 10.3 75 20-99 167-241 (269)
301 PTZ00419 valyl-tRNA synthetase 27.2 1.5E+02 0.0033 29.6 5.9 53 45-97 927-989 (995)
302 PF14182 YgaB: YgaB-like prote 27.1 2.6E+02 0.0057 20.7 6.2 39 56-96 19-57 (79)
303 TIGR01063 gyrA DNA gyrase, A s 27.1 1.5E+02 0.0032 29.3 5.7 65 19-83 412-477 (800)
304 PF02646 RmuC: RmuC family; I 26.9 3.6E+02 0.0078 23.2 7.5 15 82-96 51-65 (304)
305 PRK14161 heat shock protein Gr 26.7 3E+02 0.0066 22.4 6.7 6 127-132 128-133 (178)
306 KOG0612|consensus 26.7 4.3E+02 0.0094 28.4 9.0 29 26-54 536-564 (1317)
307 PF10393 Matrilin_ccoil: Trime 26.7 1.2E+02 0.0026 20.2 3.5 23 48-70 24-46 (47)
308 PF15397 DUF4618: Domain of un 26.6 4.4E+02 0.0095 23.1 9.7 38 61-98 63-100 (258)
309 PF10186 Atg14: UV radiation r 26.6 3.4E+02 0.0074 21.8 11.3 48 17-64 61-108 (302)
310 PRK13460 F0F1 ATP synthase sub 26.4 3.1E+02 0.0068 21.3 9.0 22 24-45 52-73 (173)
311 PF03449 GreA_GreB_N: Transcri 26.4 2.2E+02 0.0047 20.0 5.1 51 23-73 13-72 (74)
312 PRK01885 greB transcription el 26.2 1.3E+02 0.0029 23.7 4.4 7 25-31 16-22 (157)
313 PF10805 DUF2730: Protein of u 26.2 1.2E+02 0.0025 22.5 3.9 49 46-96 34-82 (106)
314 PF13935 Ead_Ea22: Ead/Ea22-li 26.1 3E+02 0.0066 21.1 7.9 58 36-93 70-133 (139)
315 COG3883 Uncharacterized protei 26.0 4.6E+02 0.01 23.1 10.3 62 16-77 35-96 (265)
316 PRK14127 cell division protein 26.0 2.4E+02 0.0051 21.6 5.6 32 27-58 38-69 (109)
317 PF05008 V-SNARE: Vesicle tran 25.9 2.1E+02 0.0046 19.2 6.3 51 44-97 22-72 (79)
318 PF05667 DUF812: Protein of un 25.9 6.1E+02 0.013 24.5 11.0 61 19-79 342-412 (594)
319 CHL00019 atpF ATP synthase CF0 25.6 3.4E+02 0.0073 21.4 8.9 15 23-37 59-73 (184)
320 PRK00286 xseA exodeoxyribonucl 25.5 4.8E+02 0.01 23.2 10.3 42 57-101 353-394 (438)
321 PRK03947 prefoldin subunit alp 25.4 2.9E+02 0.0063 20.6 6.7 14 21-34 96-109 (140)
322 PF03882 KicB: KicB killing fa 25.3 2.9E+02 0.0062 26.2 6.9 49 42-97 194-242 (440)
323 smart00340 HALZ homeobox assoc 25.3 1.4E+02 0.003 20.0 3.6 24 69-92 9-32 (44)
324 PRK14143 heat shock protein Gr 25.2 4.3E+02 0.0094 22.6 7.6 19 20-38 68-86 (238)
325 KOG4593|consensus 25.1 5E+02 0.011 26.1 8.8 69 16-92 248-319 (716)
326 PF06637 PV-1: PV-1 protein (P 25.1 6E+02 0.013 24.1 9.4 37 37-76 296-332 (442)
327 PRK05759 F0F1 ATP synthase sub 25.0 3E+02 0.0065 20.6 8.9 28 22-49 38-65 (156)
328 PF10174 Cast: RIM-binding pro 24.9 7.2E+02 0.016 25.0 10.1 22 80-101 337-358 (775)
329 KOG0971|consensus 24.8 5.8E+02 0.013 27.1 9.4 66 28-93 964-1033(1243)
330 PF01025 GrpE: GrpE; InterPro 24.8 90 0.0019 23.7 3.1 14 20-33 12-25 (165)
331 PRK06231 F0F1 ATP synthase sub 24.8 3.9E+02 0.0084 21.8 8.9 20 22-41 82-101 (205)
332 COG1579 Zn-ribbon protein, pos 24.7 4.6E+02 0.0099 22.6 9.9 78 40-117 110-199 (239)
333 PF04375 HemX: HemX; InterPro 24.4 5E+02 0.011 23.0 8.7 38 30-67 83-120 (372)
334 KOG0249|consensus 24.4 1.9E+02 0.0041 29.5 5.9 31 24-54 228-258 (916)
335 PRK10381 LPS O-antigen length 24.4 4.4E+02 0.0095 23.6 7.7 30 82-117 231-260 (377)
336 PTZ00464 SNF-7-like protein; P 24.4 3.1E+02 0.0068 22.9 6.4 15 77-91 66-80 (211)
337 PF10779 XhlA: Haemolysin XhlA 24.3 2.4E+02 0.0052 19.2 6.5 33 46-78 19-51 (71)
338 KOG0977|consensus 24.2 5.3E+02 0.011 25.0 8.6 65 35-99 115-196 (546)
339 PRK14147 heat shock protein Gr 23.8 3.8E+02 0.0083 21.6 6.7 16 17-32 23-38 (172)
340 TIGR02680 conserved hypothetic 23.7 8.7E+02 0.019 25.5 11.0 62 16-77 301-363 (1353)
341 PRK12717 flgL flagellar hook-a 23.5 6.2E+02 0.013 23.7 11.0 81 18-98 10-124 (523)
342 TIGR01730 RND_mfp RND family e 23.4 4E+02 0.0086 21.4 7.3 10 86-95 123-132 (322)
343 KOG1962|consensus 23.3 2.3E+02 0.0051 24.2 5.6 39 36-74 130-171 (216)
344 PF06721 DUF1204: Protein of u 23.2 5E+02 0.011 22.5 8.5 20 77-96 82-101 (228)
345 PF07106 TBPIP: Tat binding pr 23.0 3.6E+02 0.0078 20.8 11.0 57 18-74 78-136 (169)
346 PF07889 DUF1664: Protein of u 23.0 3.7E+02 0.0081 21.0 8.3 53 19-71 68-120 (126)
347 TIGR02231 conserved hypothetic 22.9 5.8E+02 0.013 23.2 10.0 37 62-98 128-164 (525)
348 KOG4098|consensus 22.8 1.1E+02 0.0023 24.9 3.2 35 21-55 81-115 (140)
349 PF08182 Pedibin: Pedibin/Hym- 22.8 1.5E+02 0.0032 19.0 3.3 24 45-68 2-25 (35)
350 KOG1029|consensus 22.8 6E+02 0.013 26.6 9.0 63 17-79 435-504 (1118)
351 TIGR01462 greA transcription e 22.6 3.3E+02 0.007 21.0 5.9 10 24-33 10-19 (151)
352 PF01608 I_LWEQ: I/LWEQ domain 22.6 2.1E+02 0.0045 23.1 4.9 35 51-85 115-150 (152)
353 PRK00286 xseA exodeoxyribonucl 22.6 5.5E+02 0.012 22.8 11.2 16 82-97 353-368 (438)
354 PRK12704 phosphodiesterase; Pr 22.5 6.5E+02 0.014 23.6 10.7 16 24-39 98-113 (520)
355 PRK14139 heat shock protein Gr 22.5 4.4E+02 0.0096 21.7 7.7 6 24-29 44-49 (185)
356 PRK13452 atpC F0F1 ATP synthas 22.5 2.9E+02 0.0064 21.6 5.6 19 80-98 115-133 (145)
357 PTZ00446 vacuolar sorting prot 22.5 3.3E+02 0.0072 22.6 6.2 25 19-43 41-65 (191)
358 CHL00118 atpG ATP synthase CF0 22.5 3.6E+02 0.0079 20.7 9.0 14 25-38 59-72 (156)
359 KOG3156|consensus 22.5 2.5E+02 0.0054 24.4 5.6 53 12-64 86-147 (220)
360 KOG3915|consensus 22.4 3.3E+02 0.0071 26.7 6.8 22 22-47 502-523 (641)
361 PF07412 Geminin: Geminin; In 22.3 2.7E+02 0.0059 23.6 5.7 34 61-95 115-148 (200)
362 PRK07352 F0F1 ATP synthase sub 22.3 3.8E+02 0.0082 20.8 8.8 29 22-50 53-81 (174)
363 KOG0979|consensus 22.1 6.8E+02 0.015 26.4 9.3 52 17-69 186-237 (1072)
364 PF08898 DUF1843: Domain of un 22.1 99 0.0021 21.3 2.6 20 36-55 34-53 (53)
365 TIGR02976 phageshock_pspB phag 22.1 1.3E+02 0.0029 21.5 3.4 17 55-71 50-66 (75)
366 COG5462 Predicted secreted (pe 22.1 2.1E+02 0.0046 23.2 4.8 44 24-69 27-70 (138)
367 PRK11638 lipopolysaccharide bi 22.1 4.3E+02 0.0093 23.5 7.2 29 81-115 211-239 (342)
368 PRK14150 heat shock protein Gr 22.0 4.5E+02 0.0098 21.6 7.6 14 80-93 71-84 (193)
369 PF15272 BBP1_C: Spindle pole 21.6 5E+02 0.011 21.9 7.1 17 40-56 82-98 (196)
370 TIGR01843 type_I_hlyD type I s 21.6 4.9E+02 0.011 21.9 10.5 7 105-111 278-284 (423)
371 PF08514 STAG: STAG domain ; 21.6 1E+02 0.0022 23.3 2.8 39 34-72 80-118 (118)
372 PF10174 Cast: RIM-binding pro 21.6 8.3E+02 0.018 24.5 10.2 41 44-84 382-422 (775)
373 PF07106 TBPIP: Tat binding pr 21.3 3.9E+02 0.0085 20.6 6.4 36 21-56 74-109 (169)
374 CHL00063 atpE ATP synthase CF1 21.3 3.3E+02 0.0071 20.8 5.6 19 80-98 111-129 (134)
375 PRK13453 F0F1 ATP synthase sub 21.3 4.1E+02 0.0088 20.8 9.0 17 24-40 54-70 (173)
376 PF03879 Cgr1: Cgr1 family; I 21.2 3.9E+02 0.0084 20.6 5.9 18 59-76 42-59 (108)
377 PF07352 Phage_Mu_Gam: Bacteri 21.2 3.8E+02 0.0083 20.5 6.0 11 44-54 14-24 (149)
378 PRK14472 F0F1 ATP synthase sub 21.1 4E+02 0.0088 20.7 8.9 14 24-37 54-67 (175)
379 PF02388 FemAB: FemAB family; 21.1 4.3E+02 0.0094 23.5 7.1 48 50-98 245-292 (406)
380 PRK06798 fliD flagellar cappin 20.7 5.2E+02 0.011 23.7 7.6 55 37-91 369-423 (440)
381 PRK14140 heat shock protein Gr 20.6 5E+02 0.011 21.5 7.6 29 65-93 55-83 (191)
382 cd08065 MPN_eIF3h Mpr1p, Pad1p 20.6 3.4E+02 0.0074 22.8 6.0 12 21-32 202-213 (266)
383 TIGR02132 phaR_Bmeg polyhydrox 20.5 2.3E+02 0.005 24.0 4.9 32 39-70 95-130 (189)
384 PHA02607 wac fibritin; Provisi 20.4 1.2E+02 0.0025 28.8 3.4 69 15-96 187-256 (454)
385 TIGR01061 parC_Gpos DNA topois 20.3 2.1E+02 0.0046 28.1 5.3 65 19-83 412-477 (738)
386 PF05266 DUF724: Protein of un 20.2 4.9E+02 0.011 21.3 10.0 70 23-96 90-176 (190)
387 PRK06664 fliD flagellar hook-a 20.2 6.1E+02 0.013 24.8 8.3 53 39-91 592-644 (661)
388 PTZ00009 heat shock 70 kDa pro 20.1 7.5E+02 0.016 23.5 14.2 85 13-97 512-607 (653)
389 PF12017 Tnp_P_element: Transp 20.1 2E+02 0.0044 24.5 4.6 26 33-58 11-36 (236)
390 PF05529 Bap31: B-cell recepto 20.1 3.9E+02 0.0085 21.0 6.0 21 37-57 122-142 (192)
391 PF09849 DUF2076: Uncharacteri 20.0 1.8E+02 0.0038 25.1 4.2 49 19-76 4-63 (247)
392 KOG1003|consensus 20.0 5.7E+02 0.012 22.0 10.1 72 14-85 6-84 (205)
393 PRK10626 hypothetical protein; 20.0 2E+02 0.0042 25.0 4.5 27 30-56 64-91 (239)
394 PF12958 DUF3847: Protein of u 20.0 1.6E+02 0.0035 21.8 3.5 27 45-71 6-32 (86)
No 1
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.62 E-value=0.035 Score=42.34 Aligned_cols=77 Identities=26% Similarity=0.427 Sum_probs=62.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------------hhhHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK--------------DRKRYQ 85 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k--------------~~~ryq 85 (153)
++.=|+..++.|++-...|-.+++.+..++..++.+.++-...++.++..++..++.+.+ +-+|-+
T Consensus 60 ~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke 139 (151)
T PF11559_consen 60 KLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKE 139 (151)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455577888899999999999999999999999999999999999999999988887665 445556
Q ss_pred HHHHHHHHHHH
Q psy5720 86 YEVDRIKEAVR 96 (153)
Q Consensus 86 ~Ev~riKe~l~ 96 (153)
.|++++|++|.
T Consensus 140 ~E~~kLk~rL~ 150 (151)
T PF11559_consen 140 REIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHhc
Confidence 67777777653
No 2
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=94.25 E-value=0.13 Score=36.65 Aligned_cols=55 Identities=27% Similarity=0.512 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhHHHHH-HHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLT-KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT-~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
-|=||-|||..|.+++ .-...+..+|.+||-++..+.+-|......|..++.++.
T Consensus 19 LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e 74 (75)
T PF07989_consen 19 LKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIE 74 (75)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4668999999999874 455678899999999999999988888777777777653
No 3
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.10 E-value=1.9 Score=33.27 Aligned_cols=79 Identities=18% Similarity=0.329 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY-QYEVDRIKEA 94 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry-q~Ev~riKe~ 94 (153)
.-+-+.+-|++.||.++.-|.+|+.++-.|+.-+..|.-...+++-||-.|+.-+.|+.-++-..+.-+ +-+....|.-
T Consensus 13 el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~ 92 (107)
T PF09304_consen 13 ELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQ 92 (107)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346678999999999999999999999999999999999999999999999999999988877755544 5555555543
No 4
>PRK11637 AmiB activator; Provisional
Probab=93.88 E-value=1.4 Score=38.84 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+++|.=++..|.++.+..+.+-.+=.+|..++..++..|......|..++.-+...+..+..-..++...-+.++.+++
T Consensus 52 l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr 131 (428)
T PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD 131 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555556666666666666666666666666666666665555555555566665555
Q ss_pred HHhh
Q psy5720 97 QKNL 100 (153)
Q Consensus 97 ~~n~ 100 (153)
....
T Consensus 132 a~Y~ 135 (428)
T PRK11637 132 AAFR 135 (428)
T ss_pred HHHH
Confidence 5543
No 5
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=92.69 E-value=0.39 Score=37.14 Aligned_cols=37 Identities=38% Similarity=0.589 Sum_probs=31.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|-+|+|||-..--+...++.|++ ||+.||.+|+.-..
T Consensus 31 karIa~LEGE~r~~e~l~~dL~r---------------------rIkMLE~aLkqER~ 67 (134)
T PF08232_consen 31 KARIAFLEGERRGQENLKKDLKR---------------------RIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHH
Confidence 67899999999988888888877 99999999985443
No 6
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.56 E-value=1.2 Score=39.68 Aligned_cols=76 Identities=18% Similarity=0.344 Sum_probs=67.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 26 NNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 26 ~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
..|||+...++.+...-.+.+..|.++-.-+..+.|+|.+-|..|..-=+.++.+++..+.++..+++.+.+.+.+
T Consensus 220 ~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~ 295 (359)
T PF10498_consen 220 SHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG 295 (359)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4688888888888888899999999999999999999999999999998999999999999998888888766543
No 7
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=92.40 E-value=0.32 Score=34.33 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
.-||..+|+|-..+.+|-++|+.|+.++..+.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~ 34 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWR 34 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999886543
No 8
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=92.38 E-value=0.74 Score=35.43 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH-hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLV-RDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV-~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
+.+-+.-||+.-++==+.--++++ +++..||+|+.+-|..|.--.++|..++.+|.+++.
T Consensus 17 aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~d~~~ 77 (106)
T PF11594_consen 17 ARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLSDAQN 77 (106)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677788776654222334555 899999999999999999999999999999998874
No 9
>PRK11637 AmiB activator; Provisional
Probab=91.50 E-value=2.9 Score=36.91 Aligned_cols=12 Identities=0% Similarity=0.088 Sum_probs=4.9
Q ss_pred HHHHHHHHHhhH
Q psy5720 17 QRQKISFLENNL 28 (153)
Q Consensus 17 QkQKiaFLE~NL 28 (153)
.++++.-++..+
T Consensus 59 ~~~~i~~~~~~~ 70 (428)
T PRK11637 59 KEKSVRQQQQQR 70 (428)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 10
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.18 E-value=6.3 Score=32.73 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=53.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
|+.=|.....+-+..-..+-.++..+|+.+..++..|..--.+..+||..|.+.+.....+...|+..|..+...+..
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~ 273 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAE 273 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHH
Confidence 333344334444444445556677777777778877777777788888888888888888888888777766665543
No 11
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.50 E-value=5.2 Score=37.59 Aligned_cols=75 Identities=20% Similarity=0.364 Sum_probs=48.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHH-HHH---HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKA-LET---ALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~-LE~---aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+.-|-..+-+|.+-...|..||.+|+.|-..|.+|...-..||.. |++ .|..-++.+..++...+..++.+...|
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l 139 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRL 139 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667778888888888899999999998888888888877752 222 223333333334444444444444444
No 12
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=86.80 E-value=6.3 Score=33.80 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=53.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhh---hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDN---ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dN---a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+|..-..++|...+-|+.-+ .+|+.++..+|..|....+|++.+|..|..++. ++....|+.|++.++++..
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~--~~e~~aL~~E~~~ak~r~~ 106 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD--ERELRALNIEIQIAKERIN 106 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHH
Confidence 345555555666666665333 678888899999999999999999988854443 7778888888888877553
No 13
>PRK10884 SH3 domain-containing protein; Provisional
Probab=86.55 E-value=14 Score=30.77 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRI 91 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~ri 91 (153)
+.-+..+.-||..|++|+ .+|-.-+.++......+..+|.....-|..|+.-.++.++.+.. ++...+++++..
T Consensus 89 p~~~~rlp~le~el~~l~---~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLT---DKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred ccHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666776666555 55555555556666666777777777677666665555554433 444456666666
Q ss_pred HHHH
Q psy5720 92 KEAV 95 (153)
Q Consensus 92 Ke~l 95 (153)
++..
T Consensus 166 ~~~~ 169 (206)
T PRK10884 166 QRTI 169 (206)
T ss_pred HHHH
Confidence 6544
No 14
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=85.07 E-value=2.9 Score=27.85 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
.++.|..||..++.|+.-..+|-.++..|+.++..|...
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466788899999999988888888888888887776653
No 15
>PLN02939 transferase, transferring glycosyl groups
Probab=85.02 E-value=8.4 Score=39.05 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=64.0
Q ss_pred HHHHHHHhhHHHHHHHHH--HHH-hhhhhhhcchHHHHHHHHHh-------------HHHHHHHHHHHHHHHHHHHHhhh
Q psy5720 19 QKISFLENNLDQLTKVHK--QLV-RDNADLRCELPKLEKRLRAT-------------MERVKALETALKEAKEGAMKDRK 82 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhK--QLV-~dNa~Lk~El~klEKrL~ar-------------~ERIk~LE~aLkeakE~~~k~~~ 82 (153)
.|..-|+.=|+.+|+--- -|| .+|-||+..|.++|.-|... .++|+.||..|+.+.+.+...-+
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (977)
T PLN02939 300 EKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQASDHEIHSYIQ 379 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455667777777776433 233 89999999999999877543 37899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5720 83 RYQYEVDRIKEAVRQK 98 (153)
Q Consensus 83 ryq~Ev~riKe~l~~~ 98 (153)
-||++++...+.+..-
T Consensus 380 ~~~~~~~~~~~~~~~~ 395 (977)
T PLN02939 380 LYQESIKEFQDTLSKL 395 (977)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998877543
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=84.82 E-value=4.3 Score=28.81 Aligned_cols=60 Identities=25% Similarity=0.269 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
-|++|..-=.++|...+-|+-|+..|+.+-.+- ++..+.+...+.+++++-..+.++++.
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L-----------~~e~~~L~~en~~L~~e~~~~~~rl~~ 64 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNEL-----------KEENEELKEENEQLKQERNAWQERLRS 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356676666778888888888887776653332 244555555666666666666666643
No 17
>KOG1853|consensus
Probab=84.57 E-value=30 Score=31.12 Aligned_cols=91 Identities=36% Similarity=0.518 Sum_probs=53.7
Q ss_pred HHHHHHHhhHHHHHHHHHH-------HHhhhhhhhc-------chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 19 QKISFLENNLDQLTKVHKQ-------LVRDNADLRC-------ELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQ-------LV~dNa~Lk~-------El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
|-++-||..|-|+-...-| |-.-|.+|-. -+.-+|.||..--||+--||+-|-| +|.+.-.=+|+
T Consensus 91 ~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE-ke~llesvqRL 169 (333)
T KOG1853|consen 91 QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE-KEVLLESVQRL 169 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 3466777777665554444 4445666643 2466788999999999999998866 44444443333
Q ss_pred HHHHHHHHH--HHHHHhhcCCCCCCccccccC
Q psy5720 85 QYEVDRIKE--AVRQKNLARRGPAPQIAKPIR 114 (153)
Q Consensus 85 q~Ev~riKe--~l~~~n~~rr~~~arIAKPiR 114 (153)
-.|-.-++. +|+.+..-+ .||.-|.+
T Consensus 170 kdEardlrqelavr~kq~E~----pR~~~Pss 197 (333)
T KOG1853|consen 170 KDEARDLRQELAVRTKQTER----PRIVEPSS 197 (333)
T ss_pred HHHHHHHHHHHHHHHhhccC----CCcCCccc
Confidence 333333322 233333222 37888887
No 18
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=83.99 E-value=17 Score=27.68 Aligned_cols=60 Identities=25% Similarity=0.406 Sum_probs=35.0
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
...|-.++..|+.++..+|+.+..--++..+|+..++.+.. ..+....|+.+++..+.+.
T Consensus 68 ~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~----~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 68 IERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA----KLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 33444455555555666666666666666666665554443 4455566777777766544
No 19
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=83.57 E-value=20 Score=34.24 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
+++++.-|+...+.|+..+..|...|..|+++...+..|+..--+.|..|..-.
T Consensus 183 ~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~ 236 (546)
T PF07888_consen 183 EEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE 236 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666666666666666666666666655555555544333
No 20
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.42 E-value=10 Score=37.68 Aligned_cols=71 Identities=20% Similarity=0.308 Sum_probs=62.6
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD 89 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ 89 (153)
.|+.+|....|.-++....|-.+|-.|++.+..--+++..-.-.|..|+--|..++...--..++|+-+|+
T Consensus 594 nk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie 664 (786)
T PF05483_consen 594 NKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIE 664 (786)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 46677777788888899999999999999999999999999999999999999999877778888887766
No 21
>KOG0972|consensus
Probab=82.10 E-value=13 Score=34.00 Aligned_cols=74 Identities=20% Similarity=0.371 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
|+|+...|+-+...-....--|.++-+-..-.-|+|.+=|..|..-=+.+|...++.+.++..++++..|.+.+
T Consensus 229 ~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 229 LEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45555555444322244455567777888889999999999999999999999999999999999998887654
No 22
>KOG0243|consensus
Probab=81.69 E-value=17 Score=37.31 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=47.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+..++.-++.+|.+|+.-.--.+..|..|+.++.+++++|.-++.-+..++..+.+++..+
T Consensus 453 le~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l 513 (1041)
T KOG0243|consen 453 LEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATL 513 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555565555544444567789999999999999999999999999999988873
No 23
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=81.45 E-value=13 Score=32.90 Aligned_cols=67 Identities=25% Similarity=0.324 Sum_probs=48.2
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 25 E~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
...++.+.---..++.+|..|..|+..+|..+.+-+||++.||.-+.--.| ..+++.-++.++|.++
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE----~~~~l~~ev~~L~~r~ 200 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEE----MLKKLPGEVYDLKKRW 200 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhchhHHHHHHHHH
Confidence 344444444344677899999999999999999999999999986544333 3455666666666654
No 24
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=81.16 E-value=8 Score=32.86 Aligned_cols=48 Identities=27% Similarity=0.335 Sum_probs=41.6
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhc-chHHHHHHHHHhHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRC-ELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~-El~klEKrL~ar~ERIk~LE~aL 70 (153)
-||+.|+-|..-|++=..+++.... ..+-|-.+|+-+-|||.+||+-+
T Consensus 32 ~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~ 80 (205)
T PF12240_consen 32 RLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADM 80 (205)
T ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999988777776665 78999999999999999999855
No 25
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=80.59 E-value=24 Score=28.47 Aligned_cols=76 Identities=22% Similarity=0.370 Sum_probs=60.3
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY---QYEVDRIKEAVRQ 97 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry---q~Ev~riKe~l~~ 97 (153)
|.-+|++=+|+...=-+--.+...|+.||..+...+..+.+.|..||..-+.|+.+++.=.+.| .. +.||+++..
T Consensus 8 i~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE--~dik~AYe~ 85 (159)
T PF05384_consen 8 IDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSE--EDIKEAYEE 85 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCH--HHHHHHHHH
Confidence 5667778888887777777888999999999999999999999999999999999997744433 32 245555554
Q ss_pred H
Q psy5720 98 K 98 (153)
Q Consensus 98 ~ 98 (153)
+
T Consensus 86 A 86 (159)
T PF05384_consen 86 A 86 (159)
T ss_pred H
Confidence 4
No 26
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=80.52 E-value=3.1 Score=28.75 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=24.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALE 67 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE 67 (153)
-|++|+|.-+|+|..|=-+. ..++.++++.|..-.+||++++
T Consensus 11 ~~la~qe~~ie~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 11 IKLAFQEDTIEELNDVVTEQ-------QRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhc
Confidence 37888888888887653222 3455666666666666666665
No 27
>KOG0964|consensus
Probab=80.12 E-value=12 Score=38.73 Aligned_cols=78 Identities=18% Similarity=0.388 Sum_probs=57.4
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH------------------------H
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG------------------------A 77 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~------------------------~ 77 (153)
.||-+.+++|..+---.-++-+.|..|+..+|+-|.+..|+|+.|+..+.+.+-+ +
T Consensus 393 kwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~l 472 (1200)
T KOG0964|consen 393 KWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKEL 472 (1200)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777788888766655666668899999999999999999999999988744322 2
Q ss_pred HHhhhHHHHHHHHHHHHHHHHh
Q psy5720 78 MKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 78 ~k~~~ryq~Ev~riKe~l~~~n 99 (153)
.++-++++..++.+++-|.+++
T Consensus 473 WREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 473 WREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2344556666777777665543
No 28
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=80.10 E-value=18 Score=29.76 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=19.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
..=|+||+ +|.........|-.+|..|+.|+.++..
T Consensus 83 ~~vI~fLq-~l~~~~~~~~~~~~e~~~l~~e~~~l~~ 118 (161)
T TIGR02894 83 QDVISFLQ-NLKTTNPSDQALQKENERLKNQNESLQK 118 (161)
T ss_pred HHHHHHHH-HHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 34478884 3554443444455555555555555544
No 29
>PRK00295 hypothetical protein; Provisional
Probab=79.71 E-value=5 Score=27.92 Aligned_cols=15 Identities=20% Similarity=0.547 Sum_probs=10.5
Q ss_pred HHHHHHhhHHHHHHH
Q psy5720 20 KISFLENNLDQLTKV 34 (153)
Q Consensus 20 KiaFLE~NLEQLT~V 34 (153)
|++|.|.-+|+|..|
T Consensus 13 kla~qE~tie~Ln~~ 27 (68)
T PRK00295 13 RQAFQDDTIQALNDV 27 (68)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777777654
No 30
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=79.49 E-value=19 Score=25.47 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=24.8
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKAL 66 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~L 66 (153)
|..|+..+++|..-..+|-.+|..|+.|..++..-..+-.+||.+|
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555445555555444
No 31
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=79.23 E-value=0.69 Score=33.72 Aligned_cols=64 Identities=31% Similarity=0.430 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
|++|..--..|-.+|+.|+.++..|+..|..-.+....|..+|..|++.+..-...-+.+.+.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~aq~~a~~~~~~A~~eA~~i 90 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQAQETADEIKAEAEEEAEEI 90 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 4445544556667788888888888877777777777777777777665544333333333333
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=78.82 E-value=29 Score=30.90 Aligned_cols=61 Identities=16% Similarity=0.250 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
++.++.-|++.+.++..-...++..+..|+.++..++..-....+.+..|+.-|.+.+...
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~ 395 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666667788888888888888887777788888888777776653
No 33
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=78.42 E-value=8.6 Score=27.52 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=36.4
Q ss_pred HHHHHhhHHHHHHHHHHH------------HhhhhhhhcchHHHHHHHHHhHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQL------------VRDNADLRCELPKLEKRLRATMERVKAL 66 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQL------------V~dNa~Lk~El~klEKrL~ar~ERIk~L 66 (153)
+.-||..|+||...|..| .+...+|.|++..+=++|.+.++.|-.|
T Consensus 19 l~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 19 LKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999 2445678888888888888888888776
No 34
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=77.75 E-value=14 Score=28.54 Aligned_cols=49 Identities=27% Similarity=0.291 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHh-------hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVR-------DNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 27 NLEQLT~VhKQLV~-------dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|.|+|+.-+++|-+ +.+.|+.|+.+.|.-|..--+.|+.||...+....
T Consensus 21 ~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~ 76 (160)
T PF13094_consen 21 DYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALER 76 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555543 33578899999999998888888888887666553
No 35
>PRK00736 hypothetical protein; Provisional
Probab=76.89 E-value=6.8 Score=27.25 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=23.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALE 67 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE 67 (153)
-|++|.|.-+|+|..|=- ++ ..++..++++|..-.+|+++++
T Consensus 12 ~klafqe~tie~Ln~~v~---~Q----q~~i~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00736 12 IRVAEQEKTIEELSDQLA---EQ----WKTVEQMRKKLDALTERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 367777777777775522 21 2233555555555555555543
No 36
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=76.85 E-value=12 Score=36.54 Aligned_cols=62 Identities=32% Similarity=0.490 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH-----------------HHhHHHHHHHHHHHHHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL-----------------RATMERVKALETALKEAKEG 76 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL-----------------~ar~ERIk~LE~aLkeakE~ 76 (153)
......|.=+++.++.|+.-.+-|-+.+-.|+.++.+|+.+| +++-+||..||..|.+.+..
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ 496 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777666666666666666666665554 45677777787777777653
No 37
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=76.36 E-value=38 Score=32.08 Aligned_cols=58 Identities=21% Similarity=0.265 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 10 DDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 10 ~~~gs~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
+..|+....+++.=.+.||+.+.-+-..|..+...|+.++.++++..... ++.+.|+.
T Consensus 163 ~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~~L~~q~~~a~~~~~~~-~~~~~l~~ 220 (1179)
T TIGR02168 163 EAAGISKYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKA-ERYKELKA 220 (1179)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34567777888888889998888777777777788888888887655544 44444444
No 38
>PRK09039 hypothetical protein; Validated
Probab=74.83 E-value=34 Score=30.08 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=29.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
+.+.+-|+..|..+...=.....+=..|+.++.-|++.|.+-..-|.++|...+++++.+..
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666655443332222223344444444444444444444444444444444433
No 39
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.67 E-value=43 Score=28.90 Aligned_cols=56 Identities=27% Similarity=0.287 Sum_probs=28.5
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETAL-------KEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aL-------keakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+.+|.++..++..|..-.+.|..++... .+++.-....+.-=..||.++|..+..-
T Consensus 226 ~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~L 288 (325)
T PF08317_consen 226 EAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDAL 288 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4444455555555555554444444444 4444333333333456777887776544
No 40
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=74.55 E-value=44 Score=33.69 Aligned_cols=49 Identities=33% Similarity=0.464 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
.-++..+++++.-...+-.+...++.++..++..+..-..|+..|+..+
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 746 (1163)
T COG1196 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEEL 746 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444443
No 41
>PRK04325 hypothetical protein; Provisional
Probab=73.88 E-value=8.7 Score=27.11 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=7.5
Q ss_pred HHHHHHhhHHHHHHH
Q psy5720 20 KISFLENNLDQLTKV 34 (153)
Q Consensus 20 KiaFLE~NLEQLT~V 34 (153)
|++|.|.-+|+|..|
T Consensus 17 klAfQE~tIe~LN~v 31 (74)
T PRK04325 17 QLAFQEDLIDGLNAT 31 (74)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555433
No 42
>PRK02119 hypothetical protein; Provisional
Probab=73.64 E-value=8.9 Score=27.06 Aligned_cols=14 Identities=50% Similarity=0.774 Sum_probs=6.7
Q ss_pred HHHHHHhhHHHHHH
Q psy5720 20 KISFLENNLDQLTK 33 (153)
Q Consensus 20 KiaFLE~NLEQLT~ 33 (153)
|++|.|.-+|+|..
T Consensus 17 rla~QE~tie~LN~ 30 (73)
T PRK02119 17 KIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 43
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=73.63 E-value=44 Score=26.56 Aligned_cols=58 Identities=31% Similarity=0.400 Sum_probs=33.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
.+..|.-|+..|+.||.==.+|--+=..|+.|-..+.+-|--..+||..||+..-+..
T Consensus 50 ~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~ 107 (140)
T PF10473_consen 50 SKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLE 107 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555555555555555555555566666666666666666666666554433
No 44
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=73.43 E-value=46 Score=31.17 Aligned_cols=44 Identities=25% Similarity=0.317 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 60 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ 60 (153)
...++.-||..++++..-...+-.+-..++.++..++.+|..-.
T Consensus 207 ~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~ 250 (650)
T TIGR03185 207 ILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLE 250 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666655555555544444555555555554444333
No 45
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.08 E-value=12 Score=35.21 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=15.2
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aL 70 (153)
|.|+..+.+.+....++|+.||+.+
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~ 113 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDN 113 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666665533
No 46
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=73.06 E-value=38 Score=25.60 Aligned_cols=76 Identities=12% Similarity=0.250 Sum_probs=58.3
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
-.++|.|.=-.-|-..+..=..||.++..+...+..-..-+.+....|..++......+..|+.|+..++.++.--
T Consensus 42 ~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 42 EAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433445555555578888888888888888888888899999999988889999999999998877543
No 47
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=71.44 E-value=76 Score=30.41 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=9.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 49 LPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkea 73 (153)
+..++..+..-.+++..|+..|.+.
T Consensus 863 ~~~~~~~~~~~~~~~~~l~~~l~~l 887 (1164)
T TIGR02169 863 KEELEEELEELEAALRDLESRLGDL 887 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444333
No 48
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.33 E-value=39 Score=31.67 Aligned_cols=55 Identities=18% Similarity=0.378 Sum_probs=24.8
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+..++..++..+..-..++..|+..+...--.+...|..++.++..++..+...
T Consensus 227 ~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG~~~~~r~~Le~ei~~le~e~~e~ 281 (650)
T TIGR03185 227 DLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKAN 281 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444333333333344556666666665555433
No 49
>PRK04406 hypothetical protein; Provisional
Probab=71.29 E-value=11 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.227 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 51 KLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
.||-||.---.-|..|=..+-+-+..+ .+++.++..++++++...
T Consensus 15 ~LE~~lAfQE~tIe~LN~~v~~Qq~~I----~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 15 DLECQLAFQEQTIEELNDALSQQQLLI----TKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 344444444444444444444433322 344445555555555543
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=71.26 E-value=67 Score=30.76 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=6.6
Q ss_pred HHHHHHHHhhHHHHH
Q psy5720 18 RQKISFLENNLDQLT 32 (153)
Q Consensus 18 kQKiaFLE~NLEQLT 32 (153)
++++.-|...+++|.
T Consensus 673 ~~~l~~l~~~l~~l~ 687 (1164)
T TIGR02169 673 PAELQRLRERLEGLK 687 (1164)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 51
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.96 E-value=44 Score=31.05 Aligned_cols=55 Identities=22% Similarity=0.408 Sum_probs=36.2
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH----------HHHhHHHHHHHHHHHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR----------LRATMERVKALETALKEAKEG 76 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr----------L~ar~ERIk~LE~aLkeakE~ 76 (153)
.+.+.|+..++..=..+-.+|..|+.|+..+... .+.-.+.+..|+..+++..+.
T Consensus 306 ~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~ 370 (569)
T PRK04778 306 KYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITER 370 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667777777888887777766 666666666666666644433
No 52
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=70.66 E-value=59 Score=26.77 Aligned_cols=77 Identities=23% Similarity=0.355 Sum_probs=42.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhh-------hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------hh
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDN-------ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK----------DR 81 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dN-------a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k----------~~ 81 (153)
.||..||..|.+....-...-..+ ..+.-+|..+|.|+..--.+|..||..|+..-.++-. .-
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re 171 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE 171 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 356666666666554444333222 3344556666666666666677777666655444421 23
Q ss_pred hHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAV 95 (153)
Q Consensus 82 ~ryq~Ev~riKe~l 95 (153)
..|+..|..+.+.|
T Consensus 172 ~~~e~~i~~L~~~l 185 (237)
T PF00261_consen 172 DEYEEKIRDLEEKL 185 (237)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555544
No 53
>KOG0161|consensus
Probab=70.41 E-value=59 Score=35.55 Aligned_cols=82 Identities=21% Similarity=0.334 Sum_probs=67.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE---GAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE---~~~k~~~ryq~Ev~riKe 93 (153)
.++.++||+.++-+.+++=-..-..=.+|-+|+.-+++=++...+-+..|..+|.+..+ .+-++++.|++++..+++
T Consensus 1426 ~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~ 1505 (1930)
T KOG0161|consen 1426 SRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEE 1505 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55668999998888887665555555889999999999999999999999988877665 566799999999999988
Q ss_pred HHHHH
Q psy5720 94 AVRQK 98 (153)
Q Consensus 94 ~l~~~ 98 (153)
.+...
T Consensus 1506 ~~~e~ 1510 (1930)
T KOG0161|consen 1506 QKDEG 1510 (1930)
T ss_pred HHHHH
Confidence 77543
No 54
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=70.06 E-value=39 Score=24.52 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV 88 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev 88 (153)
.+++.|..++..|+.-..-...+......=..+|...+..|..... ..+..|+++..+..+..+++..|.
T Consensus 4 ~kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~---~f~~flken~~k~~rA~k~a~~e~ 73 (126)
T PF13863_consen 4 EKKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI---KFDKFLKENEAKRERAEKRAEEEK 73 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4677888888888887777777777777777777777777765544 556666666666655444444443
No 55
>PF15058 Speriolin_N: Speriolin N terminus
Probab=69.88 E-value=8.4 Score=32.69 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcch
Q psy5720 26 NNLDQLTKVHKQLVRDNADLRCEL 49 (153)
Q Consensus 26 ~NLEQLT~VhKQLV~dNa~Lk~El 49 (153)
.|.|=|-+--..||++|++||+.|
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlV 28 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLV 28 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHH
Confidence 456667777778899999988765
No 56
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=69.76 E-value=35 Score=28.69 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=41.5
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ----YEVDRIKEAVRQK 98 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq----~Ev~riKe~l~~~ 98 (153)
..++.|+.+.++=|...+||++.||.. +.=-+.+...|..|. .+++++.+-+...
T Consensus 73 ~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~qae~~klv~iY~~M 131 (192)
T COG3334 73 YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSKQAEDGKLVKIYSKM 131 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHcC
Confidence 667777777888889999999999998 666677777777766 6677666655443
No 57
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=69.70 E-value=50 Score=25.61 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
.++.+.-|+..|+++.....-+..+-.+++.+...+...+....+++.+++...++..+.+..
T Consensus 86 ~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~ 148 (191)
T PF04156_consen 86 LQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRE 148 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666655555555555555555555556666666666666655555444433
No 58
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=69.59 E-value=76 Score=30.53 Aligned_cols=52 Identities=27% Similarity=0.431 Sum_probs=28.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHH-------hhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLV-------RDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV-------~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
.|..+|+++||..-+-...|+ .++..|+.++..++.-|...-+....|+...
T Consensus 136 ~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 136 TKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777776544444444 4444445555566666666555555555433
No 59
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=69.21 E-value=43 Score=29.41 Aligned_cols=59 Identities=22% Similarity=0.310 Sum_probs=39.5
Q ss_pred hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+=.+++.++..++.++.+..+.+..++..+.+++-..-..|.-=-.||.++|+.++.-
T Consensus 225 ~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~L 283 (312)
T smart00787 225 KKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLL 283 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 33355666667777777777777777777777776544444444567888888877654
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.85 E-value=45 Score=24.68 Aligned_cols=66 Identities=12% Similarity=0.220 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
||||..--.|-|+-.+-|+-|+..++-+=..-++-+ ..++.+++.+..++..+++|...+.++++.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~----~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV----QNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677776667888888888888887765433333322 234556778888999999999999998875
No 61
>KOG0804|consensus
Probab=68.14 E-value=73 Score=30.40 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 31 LTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 31 LT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
++.--++|-.++.++..+...+|++|.-.+++++.+..-|++-+|
T Consensus 359 ~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 359 LITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666778899999999999999999999999887776654
No 62
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=68.05 E-value=34 Score=26.80 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=15.3
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|-.-|..++.+|....|-.+....-+-+.++
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3334455555555555555555554444444
No 63
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=67.66 E-value=53 Score=31.05 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=40.2
Q ss_pred HHHHhhhhhhhcchHHHH---HHHHHhHHHHHH--------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLE---KRLRATMERVKA--------LETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klE---KrL~ar~ERIk~--------LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+-||-+...+|.++..++ +.|.+.|||++. +..+|.-.+..+.++...++.|++.....+.+-
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888887776 578888888877 444444444455555555555555555555443
No 64
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=67.19 E-value=13 Score=28.16 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=10.9
Q ss_pred HHhhhHHHHHHHHHHHHHHHH
Q psy5720 78 MKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 78 ~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+.+|.+++-|-+.++++|...
T Consensus 35 ~EEN~~L~~EN~~Lr~~l~~~ 55 (107)
T PF06156_consen 35 LEENARLRIENEHLRERLEEL 55 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555443
No 65
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=67.18 E-value=63 Score=27.20 Aligned_cols=46 Identities=17% Similarity=0.313 Sum_probs=34.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcC
Q psy5720 57 RATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR 102 (153)
Q Consensus 57 ~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~r 102 (153)
..-.++|-.+|-.-++.+..--.++.+|+..|.-+...|...|...
T Consensus 110 ~~~~~~l~~~~~r~~el~~~r~~e~~~YesRI~dLE~~L~~~n~~~ 155 (196)
T PF15272_consen 110 RTLQDELLSLELRNKELQNERERERIAYESRIADLERQLNSRNNSS 155 (196)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4455666677777677777677899999999999988888666554
No 66
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=67.02 E-value=80 Score=32.13 Aligned_cols=87 Identities=24% Similarity=0.358 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhhH-------HHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy5720 15 LAQRQKISFLENNL-------DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYE 87 (153)
Q Consensus 15 ~aQkQKiaFLE~NL-------EQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~E 87 (153)
...++++.-|+... .+|..+|..|+..=..+..++|.++..+..-.+.+..|+...++.+..+-.+...+..+
T Consensus 242 ~~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~ 321 (1201)
T PF12128_consen 242 EKVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRDELNKELSALNAD 321 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555665555544 45555566666666777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc
Q psy5720 88 VDRIKEAVRQKNLA 101 (153)
Q Consensus 88 v~riKe~l~~~n~~ 101 (153)
+..++..|...-..
T Consensus 322 l~~~~~~L~~i~~~ 335 (1201)
T PF12128_consen 322 LARIKSELDEIEQQ 335 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988877655443
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=66.95 E-value=71 Score=26.31 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=31.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkea 73 (153)
.+++.-|+..++.|+...++|-+.-++++.++..++.++....+-=..|.-.|...
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666665555444444444443333
No 68
>PRK09039 hypothetical protein; Validated
Probab=66.94 E-value=82 Score=27.76 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV 88 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev 88 (153)
....+..|...++.|. .+.+.|.-+|.-+|.+.....++|..|+..|..+...-..+=.+|..++
T Consensus 135 ~~~~V~~L~~qI~aLr-------~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~~~~~~ 199 (343)
T PRK09039 135 ALAQVELLNQQIAALR-------RQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNRYRSEF 199 (343)
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444455555444443 3356677777777777777777777777777776654333333444333
No 69
>PRK10884 SH3 domain-containing protein; Provisional
Probab=66.41 E-value=60 Score=26.97 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=12.9
Q ss_pred HHHhhhHHHHHHHHHHHHHHH
Q psy5720 77 AMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 77 ~~k~~~ryq~Ev~riKe~l~~ 97 (153)
+..+|+++.+|++..+..++.
T Consensus 137 L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 137 LKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777666665543
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=66.38 E-value=88 Score=29.61 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=10.0
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 48 ELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 48 El~klEKrL~ar~ERIk~LE~aLke 72 (153)
+++.++..+..-...|..|+..+.+
T Consensus 674 ~l~~l~~~~~~l~~~i~~l~~~i~~ 698 (880)
T PRK03918 674 ELAGLRAELEELEKRREEIKKTLEK 698 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444433
No 71
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=66.34 E-value=60 Score=25.19 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=16.9
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALE 67 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE 67 (153)
++.-|+.+......+..+..+++.++..++.......+.+..|.
T Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 107 LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333334444444444444444444
No 72
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=66.20 E-value=56 Score=32.15 Aligned_cols=60 Identities=27% Similarity=0.405 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhh---hhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNA---DLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa---~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
..++.+|.-|++.|+++..--++-+.-|- .+..++..|+++|.-..++|..||.-|.+.+
T Consensus 446 ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 446 EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888887765555554443 3456778888888888888888888777665
No 73
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=65.72 E-value=41 Score=33.96 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=47.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
--.+|++.|.+..+-+..|..-|.+|-+.+.-. + |-=+.|-..++|-...+...++-|+.|..+||-.|++
T Consensus 435 lN~~Lq~ql~es~k~~e~lq~kneellk~~e~q----~---~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~e 505 (861)
T PF15254_consen 435 LNMSLQNQLQESLKSQELLQSKNEELLKVIENQ----K---EENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEE 505 (861)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 345788889888888888888888887766322 1 1123444555666666667777777777777765543
No 74
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=65.70 E-value=44 Score=30.99 Aligned_cols=54 Identities=20% Similarity=0.363 Sum_probs=41.1
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
.||--+|..|+.+|-.+---+.-+.-+++.||.++...+| ++.++|-+++.++-
T Consensus 102 ~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~E----En~~lqlqL~~l~~ 155 (401)
T PF06785_consen 102 EQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLRE----ENQCLQLQLDALQQ 155 (401)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH----HHHHHHHhHHHHHH
Confidence 4778888888888877777777777888889988887776 56666666666544
No 75
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=65.70 E-value=43 Score=23.34 Aligned_cols=73 Identities=26% Similarity=0.335 Sum_probs=46.4
Q ss_pred HHhhHHHHHHHHHHHH--hhhhhhhcch----HHHHHHHHHhHHHHHHHHHH---------HHHHHHHHHHhhhHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLV--RDNADLRCEL----PKLEKRLRATMERVKALETA---------LKEAKEGAMKDRKRYQYEV 88 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV--~dNa~Lk~El----~klEKrL~ar~ERIk~LE~a---------LkeakE~~~k~~~ryq~Ev 88 (153)
|-+++-+|.+.-++|= +|+.+||..+ .........+.+.|+.|... .+-..+++.+|-+..-.++
T Consensus 8 in~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~f 87 (102)
T PF14523_consen 8 INQNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEF 87 (102)
T ss_dssp HHHHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666556665 8888998877 45556667777777777765 5566777777766666666
Q ss_pred HHHHHHHH
Q psy5720 89 DRIKEAVR 96 (153)
Q Consensus 89 ~riKe~l~ 96 (153)
+.+...+.
T Consensus 88 q~~q~~~~ 95 (102)
T PF14523_consen 88 QKAQRRYA 95 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=65.56 E-value=67 Score=30.59 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=25.9
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAM---KDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~---k~~~ryq~Ev~riKe~l 95 (153)
+++..++..++.+|....+.+..|+.-|.+....+- .+...|...++.+.+.+
T Consensus 366 ~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~ 421 (880)
T PRK02224 366 AELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREER 421 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHH
Confidence 444445555555555555555556655555433332 23344444444444433
No 77
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.96 E-value=84 Score=27.63 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy5720 84 YQYEVDRIKEAVR 96 (153)
Q Consensus 84 yq~Ev~riKe~l~ 96 (153)
++.|+..+...+.
T Consensus 230 ~~~~l~~l~~~I~ 242 (312)
T smart00787 230 LEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 78
>KOG0239|consensus
Probab=64.90 E-value=65 Score=31.33 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 13 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 13 gs~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
....++++|.-|.+.|..|..-++.|-.+...+..+++.+=+-+.........++.-|.+-. .-...|+++-.+|...|
T Consensus 235 ~~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 235 LESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 34556677777777777777777777777777777777777777776666666666666666 55667788888887777
Q ss_pred HHHH
Q psy5720 93 EAVR 96 (153)
Q Consensus 93 e~l~ 96 (153)
-..|
T Consensus 314 GnIR 317 (670)
T KOG0239|consen 314 GNIR 317 (670)
T ss_pred cCce
Confidence 6443
No 79
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=64.84 E-value=13 Score=24.09 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhc
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRC 47 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~ 47 (153)
.++++.-||..+++|+.-.-+|-.+++.|+.
T Consensus 23 kk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 23 KKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4666777888888888666666666655554
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=64.24 E-value=1.3e+02 Score=28.20 Aligned_cols=47 Identities=26% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhhhhhh---hcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 29 DQLTKVHKQLVRDNADL---RCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 29 EQLT~VhKQLV~dNa~L---k~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
++|+..++.+-..|..+ +.+..+|++-|....+.|..||..|.++.-
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~ 87 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444322 334455555555555555555555555443
No 81
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.14 E-value=99 Score=26.96 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 14 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 14 s~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
...-..++..|+..-+.|...=+.|-.++..|..|+..++..+
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~ 87 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEEL 87 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555566666655555433
No 82
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=64.04 E-value=42 Score=30.02 Aligned_cols=62 Identities=27% Similarity=0.437 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHH------------------HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLE------------------KRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD 89 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klE------------------KrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ 89 (153)
||.|-.-=|.|=++|..||+|...+. +.|...|..|..|..-|..-.| +..++|.||.
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E----e~~rQQEEIt 237 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE----ENRRQQEEIT 237 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33443333455577888888777766 7777888888888877766555 4555666666
Q ss_pred HHHH
Q psy5720 90 RIKE 93 (153)
Q Consensus 90 riKe 93 (153)
++-.
T Consensus 238 ~Lls 241 (306)
T PF04849_consen 238 SLLS 241 (306)
T ss_pred HHHH
Confidence 6544
No 83
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=63.93 E-value=27 Score=30.67 Aligned_cols=60 Identities=28% Similarity=0.340 Sum_probs=32.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
++++-|++.|.+|+..-.-+ ..+++++.....++.+-.-.-++.+-|+.-|++||+....
T Consensus 175 ~~i~~l~~~l~~~~~~~~~~-~~~~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~ 234 (264)
T PF07246_consen 175 HEISNLTNELSNLRNDIDKF-QEREDEKILHEELEARESGLRNESKWLEHELSDAKEDMIR 234 (264)
T ss_pred HHHHHhhhhHHHhhchhhhh-hhhhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666551111 2345555555444444443344666666666666665544
No 84
>PHA02562 46 endonuclease subunit; Provisional
Probab=63.56 E-value=65 Score=28.71 Aligned_cols=46 Identities=13% Similarity=0.288 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkea 73 (153)
++-+.++++.+......++.++..++..+..-..+|..++..+.+.
T Consensus 162 ~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~ 207 (562)
T PHA02562 162 ISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQ 207 (562)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4444444444444444555555555555555555555444443333
No 85
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.51 E-value=36 Score=29.86 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=16.7
Q ss_pred HhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 39 VRDNADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 39 V~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
=.+|..++.|+.++++.+..+.+||......|+
T Consensus 72 ~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 72 QKEIDQSKAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444443
No 86
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=63.50 E-value=72 Score=27.89 Aligned_cols=27 Identities=15% Similarity=0.338 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 69 ALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 69 aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+|+-.+...|.+..+++.|++..=+.+
T Consensus 215 sLq~vRPAfmdEyEklE~EL~~lY~~Y 241 (267)
T PF10234_consen 215 SLQSVRPAFMDEYEKLEEELQKLYEIY 241 (267)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence 466778999999999999998876654
No 87
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=63.11 E-value=71 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.459 Sum_probs=13.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 75 EGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 75 E~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
+.+|.|+.+...+++..+..+..
T Consensus 141 P~ll~Dy~~~~~~~~~l~~~i~~ 163 (177)
T PF13870_consen 141 PALLRDYDKTKEEVEELRKEIKE 163 (177)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666555543
No 88
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=62.44 E-value=20 Score=32.32 Aligned_cols=49 Identities=27% Similarity=0.417 Sum_probs=38.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
-..-+|++++++|. +.=.++..||..+.|+|.-..|...=||++|-+|.
T Consensus 175 D~v~LLqkk~~~l~-------~~l~~~~~eL~~~~k~L~faqekn~LlqslLddan 223 (323)
T PF08537_consen 175 DRVILLQKKIDELE-------ERLNDLEKELEITKKDLKFAQEKNALLQSLLDDAN 223 (323)
T ss_pred hHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555666666554 33367788999999999999999999999999987
No 89
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=62.00 E-value=53 Score=23.09 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=32.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
.|+-|-...+.|.+-+-++-.-.-.||..+..+|+-+..-..++..+|.-+...++
T Consensus 13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666555555555566666666666665555555555554444443
No 90
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=61.45 E-value=87 Score=25.40 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=38.0
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+..|..+..+|+.+...++.++..--.++..+|. ...+......++++.||+.+|..-.+-
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek---~~~e~~~~~~k~~~~ei~~lk~~~~ql 182 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEK---REEELRQEEEKKHQEEIDFLKKQNQQL 182 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777666666555555554 333333456688888888887655443
No 91
>smart00338 BRLZ basic region leucin zipper.
Probab=61.20 E-value=23 Score=23.46 Aligned_cols=37 Identities=32% Similarity=0.470 Sum_probs=22.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
++.|.-||..++.|+.-...|-.+.+.|+.|+..+.-
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777776555555555555555544443
No 92
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=61.05 E-value=25 Score=29.00 Aligned_cols=57 Identities=23% Similarity=0.295 Sum_probs=46.9
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
.|+..+.--++.||....+....|..+|+.|+ -+.|--..+.||.+|+..+++....
T Consensus 128 ~DvT~~y~D~~arl~~l~~~~~rl~~ll~ka~--~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 128 EDVTEQYVDLEARLKNLEAEEERLLELLEKAK--TVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888899999999999999999998766 4777778888888888877766554
No 93
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.00 E-value=29 Score=23.65 Aligned_cols=34 Identities=26% Similarity=0.378 Sum_probs=19.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKL 52 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~kl 52 (153)
-.+.-+.+.+.++..-..+|-.+|..|+-|+..+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666655544
No 94
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=60.92 E-value=1.1e+02 Score=30.87 Aligned_cols=60 Identities=28% Similarity=0.376 Sum_probs=36.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+..+.++...+..++.-.++|..+-..|..++..+...+....+++..++..|...++..
T Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 774 (1163)
T COG1196 715 ERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEAL 774 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777776666666655555555555555555554444433
No 95
>PRK14127 cell division protein GpsB; Provisional
Probab=60.65 E-value=12 Score=28.61 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKA 65 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~ 65 (153)
||++..-=-.|..+|..|+.++..++.+|..-..++..
T Consensus 32 Ld~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 32 LDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444455566667776666666666555555443
No 96
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=60.50 E-value=88 Score=25.18 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=30.7
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~ 78 (153)
..++-..+..|+.++..+.+++....++|..+...|..-+..+.
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666777777777777777777777777777777665544
No 97
>KOG0971|consensus
Probab=60.13 E-value=67 Score=33.46 Aligned_cols=53 Identities=36% Similarity=0.536 Sum_probs=35.8
Q ss_pred HHHHHHHh---hHHHHHHHHHHHHhhh----hhhhcchHHH-------HHHHHHhHHHHHHHHHHHH
Q psy5720 19 QKISFLEN---NLDQLTKVHKQLVRDN----ADLRCELPKL-------EKRLRATMERVKALETALK 71 (153)
Q Consensus 19 QKiaFLE~---NLEQLT~VhKQLV~dN----a~Lk~El~kl-------EKrL~ar~ERIk~LE~aLk 71 (153)
.|+..||. .||.|.-+|-||++.| -||+.||..+ +++..+-.|.|-.+-.++.
T Consensus 462 ekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~ 528 (1243)
T KOG0971|consen 462 EKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIK 528 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46778874 5777788999999998 5677777554 5555555555554444443
No 98
>KOG0933|consensus
Probab=59.99 E-value=70 Score=33.37 Aligned_cols=73 Identities=23% Similarity=0.395 Sum_probs=37.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL-------RATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL-------~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
+++++++|+|-+ ++++++++-.++.++..++-.+ ..-.+-|+.||.-+++++-.--+.-+-++.+++.++-
T Consensus 724 l~l~~~r~~~~e--~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~ 801 (1174)
T KOG0933|consen 724 LALLEKRLEQNE--FHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQ 801 (1174)
T ss_pred HHHHHHHHhcCh--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHH
Confidence 344444444433 4567777777777776555444 3444555566666666554332222334444444444
Q ss_pred HH
Q psy5720 94 AV 95 (153)
Q Consensus 94 ~l 95 (153)
++
T Consensus 802 ~~ 803 (1174)
T KOG0933|consen 802 RA 803 (1174)
T ss_pred HH
Confidence 44
No 99
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.96 E-value=38 Score=23.54 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHH
Q psy5720 81 RKRYQYEVDRIKEAVR 96 (153)
Q Consensus 81 ~~ryq~Ev~riKe~l~ 96 (153)
++-++++|+.+++.+.
T Consensus 41 n~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 41 NRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555555555553
No 100
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=59.59 E-value=26 Score=22.85 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=17.5
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
..|-.+-|.|..=..-|..+|..|+.||..+.-+
T Consensus 8 ~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 8 DALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555555555544433
No 101
>KOG0963|consensus
Probab=59.52 E-value=1.3e+02 Score=29.68 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=8.9
Q ss_pred HHHHHHHHhhHHHHH
Q psy5720 18 RQKISFLENNLDQLT 32 (153)
Q Consensus 18 kQKiaFLE~NLEQLT 32 (153)
+++|-|||+.-++|.
T Consensus 248 q~ri~~lE~e~e~L~ 262 (629)
T KOG0963|consen 248 QQRIVFLEREVEQLR 262 (629)
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666665554
No 102
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=59.43 E-value=1e+02 Score=26.09 Aligned_cols=51 Identities=14% Similarity=0.268 Sum_probs=30.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
|+.-||.-+|++...=..-.++|..|+.+|.++|.+|++-.+-+-.+=.+|
T Consensus 87 kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~ll 137 (189)
T TIGR02132 87 KVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELL 137 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444433322235899999999999988877655554433333
No 103
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.18 E-value=89 Score=24.82 Aligned_cols=74 Identities=20% Similarity=0.359 Sum_probs=57.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+.+|-.||+.|+..-.-+-.++.||..-+.++..++-.|..-..-...|+.-|-... .++..+.++++..++.+
T Consensus 23 e~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~----sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 23 EDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR----SEKENLDKELQKKQEKV 96 (140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999888888888887665433 34445555555554444
No 104
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=58.98 E-value=70 Score=25.35 Aligned_cols=69 Identities=26% Similarity=0.352 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH--------hHHHHH----HHHHHHHHHHH---HHHHhhhHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRA--------TMERVK----ALETALKEAKE---GAMKDRKRYQYEVDRI 91 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a--------r~ERIk----~LE~aLkeakE---~~~k~~~ryq~Ev~ri 91 (153)
.||+|-.-..||-++|-.|+--+..+|-||+| |.|..+ .+|+..-.+-. -++.++..++.|-..+
T Consensus 36 rleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK~qqefe~s~~qsLq~i~~L~nE~n~L~eEN~~L 115 (120)
T PF10482_consen 36 RLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKKKQQEFESSHLQSLQHIFELTNEMNTLKEENKKL 115 (120)
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 35667677789999999999999999999997 333222 33333222222 2344666666666666
Q ss_pred HHHH
Q psy5720 92 KEAV 95 (153)
Q Consensus 92 Ke~l 95 (153)
++.|
T Consensus 116 ~eEl 119 (120)
T PF10482_consen 116 KEEL 119 (120)
T ss_pred HHHh
Confidence 6654
No 105
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.33 E-value=42 Score=23.05 Aligned_cols=47 Identities=23% Similarity=0.403 Sum_probs=28.1
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEA 94 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~ 94 (153)
+++..+...|.+|....+||..||......... -+-...+++.|++.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~----i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKD----IKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 345566777777777777777777765444432 23344455555553
No 106
>PRK00846 hypothetical protein; Provisional
Probab=58.32 E-value=27 Score=25.38 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=38.8
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
++-.-|..||-||.-...-|..|-.++-.-+. .-.+++.+|..++++|+....
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~----~I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARL----TGARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcc
Confidence 35566778888888888888888888776443 345677778888888877753
No 107
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=58.24 E-value=15 Score=25.39 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=22.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhh
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADL 45 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~L 45 (153)
.|.=|+.|+++|..+|..|++=|.++
T Consensus 13 ~~~~L~~n~~~L~~ihesL~~FNESF 38 (58)
T PF08653_consen 13 SMETLDKNMEQLNQIHESLSDFNESF 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999877543
No 108
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=57.61 E-value=25 Score=26.89 Aligned_cols=34 Identities=38% Similarity=0.491 Sum_probs=18.2
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ 57 (153)
|-..+++|...=..|+++|+.|+-|-..|-++|.
T Consensus 20 l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~ 53 (110)
T PRK13169 20 LLKELGALKKQLAELLEENTALRLENDKLRERLE 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445556666666666655555544
No 109
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=57.16 E-value=91 Score=24.29 Aligned_cols=54 Identities=31% Similarity=0.382 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 26 NNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 26 ~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
...+++..--|+|-..|..+-.|+.-|.+++...-..|..|+..|.+++..+-.
T Consensus 14 ~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee 67 (143)
T PF12718_consen 14 DRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEE 67 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555566666666666666666666666666666666666666655544
No 110
>PLN02939 transferase, transferring glycosyl groups
Probab=56.41 E-value=1.3e+02 Score=30.98 Aligned_cols=86 Identities=21% Similarity=0.406 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHH---HHhhhhhhhcchHHHHHHHHH---------------hHHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQ---LVRDNADLRCELPKLEKRLRA---------------TMERVKALETALKEAKEGAM 78 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQ---LV~dNa~Lk~El~klEKrL~a---------------r~ERIk~LE~aLkeakE~~~ 78 (153)
=|.-|.||...|.......+- |..+-+-|..-|-.||.|+.+ -.|.|..|+.+|.-+....-
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (977)
T PLN02939 238 LKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVE 317 (977)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666555554 345667777777788888755 34667777777765544332
Q ss_pred H------hhhHHHHHHHHHHHHHHHHhhcC
Q psy5720 79 K------DRKRYQYEVDRIKEAVRQKNLAR 102 (153)
Q Consensus 79 k------~~~ryq~Ev~riKe~l~~~n~~r 102 (153)
+ +++-++-.||.+++.|..+|...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (977)
T PLN02939 318 KAALVLDQNQDLRDKVDKLEASLKEANVSK 347 (977)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHhhHhh
Confidence 2 78888888888888887776653
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.26 E-value=1.3e+02 Score=25.92 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=41.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA----TMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKE 93 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a----r~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe 93 (153)
...|...+++|..+--+|+.-.+.|+.|+..++..... ..+.+.+|-..|.+.+..+.. +-...+.|++.+.+
T Consensus 165 ~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~ 244 (325)
T PF08317_consen 165 YAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEE 244 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666555441 223444444555555444432 22344555555555
Q ss_pred HHHHH
Q psy5720 94 AVRQK 98 (153)
Q Consensus 94 ~l~~~ 98 (153)
.+...
T Consensus 245 ~i~~~ 249 (325)
T PF08317_consen 245 KIEEL 249 (325)
T ss_pred HHHHH
Confidence 55443
No 112
>KOG2129|consensus
Probab=56.11 E-value=1.1e+02 Score=29.40 Aligned_cols=76 Identities=28% Similarity=0.385 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhHHHHH----HHHH-------HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Q psy5720 15 LAQRQKISFLENNLDQLT----KVHK-------QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT----~VhK-------QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~r 83 (153)
.+-+..|.||.+..|.|. ..|| |+..+--+.+.|..++.++|.-+.||-.+|=..|.|+.-.+-.|-.+
T Consensus 249 ~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeer 328 (552)
T KOG2129|consen 249 AAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDEER 328 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 467888999988888654 4455 56666788999999999999999999999999999988877777777
Q ss_pred HHHHHHH
Q psy5720 84 YQYEVDR 90 (153)
Q Consensus 84 yq~Ev~r 90 (153)
|=.|+-.
T Consensus 329 y~Ne~~~ 335 (552)
T KOG2129|consen 329 YLNEFVD 335 (552)
T ss_pred HHhhhhc
Confidence 7666543
No 113
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=55.62 E-value=23 Score=24.42 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=27.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
||.=||++|..|...=-.+-.+|.+|+.++.+++.-.
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566888888888877777778888888877776543
No 114
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=55.52 E-value=20 Score=23.22 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 62 RVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 62 RIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
+.+++|.++.+++..++.|. ..++.|-+++.++-
T Consensus 4 ~~~sFeeLV~eNK~ell~d~----~~me~Ieerie~k~ 37 (40)
T PF13040_consen 4 KKKSFEELVRENKQELLNDK----EAMEKIEERIEEKH 37 (40)
T ss_pred cccCHHHHHHHHHHHHHcCH----HHHHHHHHHHHHHH
Confidence 45789999999999999985 45778888877663
No 115
>KOG2495|consensus
Probab=55.33 E-value=7.5 Score=36.75 Aligned_cols=21 Identities=57% Similarity=0.908 Sum_probs=18.0
Q ss_pred CCCCCChhhhhhe---eeecCCcc
Q psy5720 130 TSPRWGDEERKRK---VIMGGGAT 150 (153)
Q Consensus 130 ~~~~~~~~~~~~~---~~~~~~~~ 150 (153)
..|..+||||||+ |+.|||.|
T Consensus 206 ~~~~l~~eerkRlLh~VVVGGGPT 229 (491)
T KOG2495|consen 206 ELPGLSDEERKRLLHFVVVGGGPT 229 (491)
T ss_pred hcCCCChHHhhheEEEEEECCCCc
Confidence 5688999999986 78999976
No 116
>KOG1962|consensus
Probab=55.23 E-value=76 Score=27.12 Aligned_cols=54 Identities=35% Similarity=0.438 Sum_probs=35.0
Q ss_pred HHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 38 LVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 38 LV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
|...|++++-++.+++..|+.+. +.||.+-++ .+.+-++-...+.|.||..|..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~---~~Le~~~~~-~~al~Kq~e~~~~EydrLlee~ 202 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQ---KKLEKAQKK-VDALKKQSEGLQDEYDRLLEEY 202 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHcccHHHHHHHHH
Confidence 67777888888888887776543 455554333 2334456667777777777653
No 117
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.20 E-value=53 Score=28.61 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=42.2
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+|..|+-.+++++..-+..|+.||+.++..+..-+.+..-.|.+++..+...-
T Consensus 53 ~~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~aG 106 (247)
T COG3879 53 LDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLAG 106 (247)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHhc
Confidence 478888888999999999999999999999886666666666666776655443
No 118
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=55.05 E-value=83 Score=30.76 Aligned_cols=15 Identities=20% Similarity=0.685 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHH
Q psy5720 81 RKRYQYEVDRIKEAV 95 (153)
Q Consensus 81 ~~ryq~Ev~riKe~l 95 (153)
-+.|-.||++|++.+
T Consensus 634 Er~~~~EL~~~~~~l 648 (717)
T PF10168_consen 634 EREFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555444
No 119
>KOG4593|consensus
Probab=54.90 E-value=2.1e+02 Score=28.72 Aligned_cols=76 Identities=22% Similarity=0.308 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
-+--+.-++..|.+|..-||+--- .+.+..-.+.+...+..+|-..+-..|+.-++.+-..-+.||.++.+.++.+
T Consensus 60 ~~s~~~~~~~~l~~Lqns~kr~el---~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~ 135 (716)
T KOG4593|consen 60 SKSLLMQLEDELMQLQNSHKRAEL---ELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQC 135 (716)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455688999999888876432 3445556778888888888888888888888877777788888888777543
No 120
>PRK15396 murein lipoprotein; Provisional
Probab=54.28 E-value=57 Score=23.69 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 61 ERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 61 ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
.=|..+......|++.+.+-|.|+-..+..+|
T Consensus 46 ~dv~~~~~~~~~a~~eA~raN~RlDn~~~sy~ 77 (78)
T PRK15396 46 NDVNAMRSDVQAAKDDAARANQRLDNQATKYR 77 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566777777788888888888777666553
No 121
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=54.22 E-value=2.1e+02 Score=27.56 Aligned_cols=79 Identities=18% Similarity=0.266 Sum_probs=50.8
Q ss_pred HHHHHhhHHHHHHHHHHHHh-hhhhhhcc-------hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVR-DNADLRCE-------LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~-dNa~Lk~E-------l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
..+-+..+++||. ++|+.+ .+..+..| |..+|+.+.+..+-++.+...+..-++.+.--++-|+.||..+=
T Consensus 415 k~~Y~~RI~eLt~-qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 415 KSYYMSRIEELTS-QLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3556778888884 455544 33444444 44445544455555555566666666666678999999999998
Q ss_pred HHHHHHhh
Q psy5720 93 EAVRQKNL 100 (153)
Q Consensus 93 e~l~~~n~ 100 (153)
|-|-..|-
T Consensus 494 EHLasmNe 501 (518)
T PF10212_consen 494 EHLASMNE 501 (518)
T ss_pred HHHHHHHH
Confidence 87765553
No 122
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=54.15 E-value=1.3e+02 Score=25.03 Aligned_cols=82 Identities=20% Similarity=0.326 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK---EGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak---E~~~k~~~ryq~Ev~ri 91 (153)
......|.=|...|+.++.=.-+|.-+-..|+.++..+..++.....-...||.-|...+ +.....+-.++.+++.+
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L 129 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSL 129 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHH
Confidence 345667777788888888888888888888999999999999988888888887665555 33444667788888888
Q ss_pred HHHHH
Q psy5720 92 KEAVR 96 (153)
Q Consensus 92 Ke~l~ 96 (153)
++.+.
T Consensus 130 ~eEl~ 134 (312)
T PF00038_consen 130 KEELE 134 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87664
No 123
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=53.69 E-value=1e+02 Score=30.16 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 72 EAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 72 eakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
+|.-.++++=++++.+++.++..+.+.+.
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666666666666666655543
No 124
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=53.08 E-value=29 Score=28.34 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 49 LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
|.-+|.||..-.||---||.-|.| ||.|.-..+|+--|+.-+|..+
T Consensus 2 LeD~EsklN~AIERnalLE~ELdE-KE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELDE-KENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCH--------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999966 8877777777766666665544
No 125
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.70 E-value=1.1e+02 Score=24.07 Aligned_cols=28 Identities=32% Similarity=0.585 Sum_probs=17.7
Q ss_pred HHhhhhhhhcchHHHHHHHHHhHHHHHH
Q psy5720 38 LVRDNADLRCELPKLEKRLRATMERVKA 65 (153)
Q Consensus 38 LV~dNa~Lk~El~klEKrL~ar~ERIk~ 65 (153)
|-.++..|+.|+.+++.+|+...+.+++
T Consensus 78 lr~~~e~L~~eie~l~~~L~~ei~~l~a 105 (177)
T PF07798_consen 78 LRSENEKLQREIEKLRQELREEINKLRA 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777665554444
No 126
>PRK14011 prefoldin subunit alpha; Provisional
Probab=52.38 E-value=48 Score=26.21 Aligned_cols=39 Identities=26% Similarity=0.369 Sum_probs=22.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 59 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar 59 (153)
+.|++++.+.|++..+.|-..=.++..++..++..|...
T Consensus 90 ~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k 128 (144)
T PRK14011 90 IEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKR 128 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777776666666544444455555555554444
No 127
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=52.20 E-value=32 Score=28.50 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=15.1
Q ss_pred HHHHHhhhhhhhcchHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL 56 (153)
.++|..+|..|+.|+..++..+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888887777766543
No 128
>KOG4552|consensus
Probab=52.15 E-value=1.2e+02 Score=26.80 Aligned_cols=52 Identities=21% Similarity=0.234 Sum_probs=36.7
Q ss_pred hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ--YEVDRIKE 93 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq--~Ev~riKe 93 (153)
..-.+.-.+...||+....+.+-|+.|+.-||+|..-+.. .+|| |.+..|++
T Consensus 67 ~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtt--a~fqA~qKLksi~~ 120 (272)
T KOG4552|consen 67 PEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTT--ACFQANQKLKSIKE 120 (272)
T ss_pred HhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3344445556778888889999999999999999875543 3444 34555665
No 129
>KOG1853|consensus
Probab=52.06 E-value=1.6e+02 Score=26.57 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
+.||..|+||..-.+-|.-+|.-|+-|+....-|+
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~ 82 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQ 82 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999888889889999988886555444
No 130
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.04 E-value=1.1e+02 Score=23.65 Aligned_cols=75 Identities=23% Similarity=0.281 Sum_probs=49.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
-.+.+.+.|..-==.-..+=..|=-.||-++.==..-.+||+.||.-++++.+.+..--+.-+..+..|.+.++.
T Consensus 66 ~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ 140 (144)
T PF11221_consen 66 EFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIRE 140 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666543333333444455556665554455667999999999999988877777777777777777764
No 131
>TIGR01690 ICE_RAQPRD integrative conjugative element protein, RAQPRD family. This model represents a small family of proteins about 100 amino acids in length, including a predicted signal sequence and a perfectly conserved motif RAQPRD towards the C-terminus. Members are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae DC3000. The function is unknown.
Probab=51.45 E-value=80 Score=23.86 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=23.0
Q ss_pred HHhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccccCC
Q psy5720 78 MKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRA 115 (153)
Q Consensus 78 ~k~~~ryq~Ev~riKe~l~~~n~~rr~~~arIAKPiRg 115 (153)
.=|+-++..-|.+||.-+..-=.-+| ...|...||+|
T Consensus 56 ~FDY~rl~~Dl~~ir~GI~~YL~PsR-AQPRd~~~L~G 92 (94)
T TIGR01690 56 HFDYPRLRADLKRIRQGIQQYLTPSR-AQPRDPSELAG 92 (94)
T ss_pred ecCHHHHHHHHHHHHHHHHHhCCCcc-cCCCCCccCCC
Confidence 33777788888888887765533333 24455556653
No 132
>PHA03158 hypothetical protein; Provisional
Probab=51.29 E-value=19 Score=31.36 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=31.1
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+-+++++.|-+++|+-....||++.||.-|+|-+..+
T Consensus 234 EK~~~~kQllka~kkc~~~s~~~~~leeei~eleks~ 270 (273)
T PHA03158 234 EKAAILKQLLKAAKKCCKNSEHEKELEEEIEELEKSL 270 (273)
T ss_pred HhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhh
Confidence 4467778888999999999999999999998876544
No 133
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=50.75 E-value=45 Score=26.70 Aligned_cols=52 Identities=15% Similarity=0.334 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~ 78 (153)
-+..|+..+-+|..|-..|+..+..+...|...+.-|..|+.-|.+.++.+-
T Consensus 129 ~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~I~ 180 (184)
T PF05791_consen 129 LINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEEIK 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGGG-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 3566777778888888888888888888888888888888888877766543
No 134
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=50.20 E-value=2e+02 Score=26.44 Aligned_cols=87 Identities=16% Similarity=0.200 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhc----chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRC----ELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~----El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
.+..-+.-+-+.|.++..+|-+|..+--+||- |+.-+.--|.---.|...||..|.|.-|--..+--.+.|++.-+
T Consensus 209 ~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~ 288 (395)
T PF10267_consen 209 QQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASM 288 (395)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455666778888888999999888776665 77777778888888999999999998887666666777777777
Q ss_pred HHHHHHHhhcC
Q psy5720 92 KEAVRQKNLAR 102 (153)
Q Consensus 92 Ke~l~~~n~~r 102 (153)
-|+|..-..-|
T Consensus 289 EEK~~Yqs~eR 299 (395)
T PF10267_consen 289 EEKMAYQSYER 299 (395)
T ss_pred HHHHHHHHHHH
Confidence 77665444333
No 135
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=49.20 E-value=93 Score=28.28 Aligned_cols=49 Identities=10% Similarity=0.150 Sum_probs=27.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 48 ELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 48 El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
.+..+...+..-.+++..|-..+.+.. ......+.+++.+...|.....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAE----RRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhcc
Confidence 455666666666666655555444333 3445555666666666654443
No 136
>KOG3850|consensus
Probab=48.72 E-value=1.7e+02 Score=27.64 Aligned_cols=71 Identities=27% Similarity=0.454 Sum_probs=50.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR-ATMERVKALETALKEAKEGAMK-DRKRYQYEVDRI 91 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~-ar~ERIk~LE~aLkeakE~~~k-~~~ryq~Ev~ri 91 (153)
|=+..-||.-|..||-.|. .+=+.||.||+-+|-|.. -..||-+.++.+|.-.|-++.+ +..--||+|..+
T Consensus 305 RyR~erLEEqLNdlteLqQ---nEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~ 377 (455)
T KOG3850|consen 305 RYRYERLEEQLNDLTELQQ---NEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQL 377 (455)
T ss_pred HHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777775542 222889999999998876 5689999999999888888877 555555555554
No 137
>KOG2896|consensus
Probab=48.67 E-value=1.2e+02 Score=28.05 Aligned_cols=16 Identities=19% Similarity=0.019 Sum_probs=12.2
Q ss_pred CCccccccCCCCCCCC
Q psy5720 106 APQIAKPIRAGQPVVP 121 (153)
Q Consensus 106 ~arIAKPiRgGg~~~~ 121 (153)
..+-+.|||-+++|.+
T Consensus 182 ~~~~~~~irq~~~~~s 197 (377)
T KOG2896|consen 182 RIQDTFKIRQDGSPLS 197 (377)
T ss_pred HHhhhhhhhccCcchh
Confidence 3466888998888776
No 138
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.66 E-value=1.3e+02 Score=26.06 Aligned_cols=16 Identities=6% Similarity=0.387 Sum_probs=7.4
Q ss_pred hhhHHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEAV 95 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l 95 (153)
+..+++.+++....++
T Consensus 264 e~~~l~~~~~~~~~kl 279 (344)
T PF12777_consen 264 EKQELEEEIEETERKL 279 (344)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 4444444444444444
No 139
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.55 E-value=1.3e+02 Score=27.06 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcch
Q psy5720 14 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL 49 (153)
Q Consensus 14 s~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El 49 (153)
+..|+..|+-|-..+=.|-+.-||+.-+|..|..-|
T Consensus 229 ~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 229 NRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 344555555555555555555555555555554443
No 140
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=48.45 E-value=90 Score=21.62 Aligned_cols=51 Identities=27% Similarity=0.342 Sum_probs=31.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
||.-|.+..-+|..-.-||..|-..|+ ..+..||+.+++-|.|+-.....+
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr---------------------~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALR---------------------ADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhhHhhc
Confidence 566666666666666666655555444 445567777777777766555444
No 141
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=48.31 E-value=1.7e+02 Score=24.77 Aligned_cols=71 Identities=21% Similarity=0.298 Sum_probs=36.8
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
|=..++-|..-.+.|-.+|++|+..+..+|--=..=.+=|-.|..-++..| .+....+.+..|++-+|.-+
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q-qal~~aK~l~eEledLk~~~ 76 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ-QALQKAKALEEELEDLKTLA 76 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666665554333333333445555555444 34444444555555555433
No 142
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=48.12 E-value=33 Score=25.13 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=27.3
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
.+..|+.|.+.|...-.+|++.||....|+-.
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999998777653
No 143
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=47.77 E-value=1.4e+02 Score=24.68 Aligned_cols=51 Identities=25% Similarity=0.440 Sum_probs=32.4
Q ss_pred HHHhhh-hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Q psy5720 37 QLVRDN-ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDR-KRYQYEVDRIKEAVR 96 (153)
Q Consensus 37 QLV~dN-a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~-~ryq~Ev~riKe~l~ 96 (153)
+.|+++ ++|+.|+..+++ .|..||.+...++- ++++ .-++.|++++.+.+-
T Consensus 116 ~~Vd~~~~eL~~eI~~L~~-------~i~~le~~~~~~k~--LrnKa~~L~~eL~~F~~~yL 168 (171)
T PF04799_consen 116 QQVDQTKNELEDEIKQLEK-------EIQRLEEIQSKSKT--LRNKANWLESELERFQEQYL 168 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 455666 777888777765 45677777766664 4433 235667887776653
No 144
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=47.43 E-value=1e+02 Score=25.53 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCccCCCCCCCCCCChhhh
Q psy5720 110 AKPIRAGQPVVPPVIRPGGVTSPRWGDEER 139 (153)
Q Consensus 110 AKPiRgGg~~~~~~~r~~~~~~~~~~~~~~ 139 (153)
-||||+|+++.-+ |+|++|..|.+..|
T Consensus 158 ~k~lr~~~yNPL~---G~~ggs~~wRPgrR 184 (190)
T PF06936_consen 158 KKPLRGSDYNPLT---GDGGGSCSWRPGRR 184 (190)
T ss_dssp ------------------------------
T ss_pred cCCCCCCCCCCCC---CCCCCCCccCCCCC
Confidence 4899998886432 44444444555444
No 145
>PRK06663 flagellar hook-associated protein FlgL; Validated
Probab=47.39 E-value=2.1e+02 Score=25.62 Aligned_cols=82 Identities=28% Similarity=0.395 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH---h-----hhh-------hhhcchHHHH----------HHHHHhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLV---R-----DNA-------DLRCELPKLE----------KRLRATMERVKALETALK 71 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV---~-----dNa-------~Lk~El~klE----------KrL~ar~ERIk~LE~aLk 71 (153)
..+=+.-|.++...|.+++.||. + ||+ .|+.++..++ .+|....--+..+...|.
T Consensus 10 ~~~~~~~l~~~~~~l~~~q~qlsTGkri~~psDDP~~~~~~~~l~~~~~~~~qy~~ni~~a~s~L~~~dsaL~~i~~~l~ 89 (419)
T PRK06663 10 YNNLKSSLRRQESKMTKLQNQLSTGQRIQKLRDDPTAATHSIRYKSRLFKLDRYQKNIDDGKDRLRYAEGYLQSITNILQ 89 (419)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccCChhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667888888888888886 2 333 5666665544 455566666677778888
Q ss_pred HHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Q psy5720 72 EAKEGAMK---------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 72 eakE~~~k---------~~~ryq~Ev~riKe~l~~~ 98 (153)
.++|.++. +|.-+..|++.+++.|-.-
T Consensus 90 ~~rel~v~a~n~t~s~~dr~aia~e~~~l~~~l~~~ 125 (419)
T PRK06663 90 RARELAVQGANGTYQADDKKKIAKEIDELLEDLVDI 125 (419)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88886655 6889999999999987544
No 146
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=47.31 E-value=2.2e+02 Score=25.72 Aligned_cols=55 Identities=29% Similarity=0.431 Sum_probs=30.3
Q ss_pred HHhhHHHHHHHHHHHHhhh--------hhhhcchHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDN--------ADLRCELPKLEKRL--------RATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dN--------a~Lk~El~klEKrL--------~ar~ERIk~LE~aLkeakE~~~k 79 (153)
|.++|+||-..+-.|-... ..|.+.+.+|++.. +.+.|-|. ||.+|..-||-++.
T Consensus 111 L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVd-lEn~LE~EQE~lvN 181 (310)
T PF09755_consen 111 LSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVD-LENTLEQEQEALVN 181 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh-HHHHHHHHHHHHHH
Confidence 3445555555444333222 24555555555411 33445555 89999888887775
No 147
>KOG0996|consensus
Probab=47.18 E-value=1.7e+02 Score=31.02 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
+.+.++.+++..|.+--....+.=.++.+.+.++.....-.++.|..|+..+....+.|-.....|+++-..|++
T Consensus 405 E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~ 479 (1293)
T KOG0996|consen 405 EKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIRE 479 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 334444444444444333334444445555555555555666777777777777666666666666655555444
No 148
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=46.90 E-value=1.6e+02 Score=24.17 Aligned_cols=48 Identities=29% Similarity=0.475 Sum_probs=27.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHH
Q psy5720 51 KLEKRLRATMERVKALETALKEAKEGAM---KDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLkeakE~~~---k~~~ryq~Ev~riKe~l~~~ 98 (153)
++..+...--++|..|+.-|++|--++- +.-.+++.+|+.+.+.|..+
T Consensus 166 ~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~ 216 (237)
T PF00261_consen 166 KASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE 216 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566666666666654433 34566777777777766544
No 149
>KOG1937|consensus
Probab=46.90 E-value=1.4e+02 Score=28.80 Aligned_cols=76 Identities=22% Similarity=0.343 Sum_probs=54.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH---HHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK---RLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIK 92 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK---rL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riK 92 (153)
.+|.=||..|+-++.-+.--+.-|..|++|+.++-+ |+.- --||+.+-.-.+--++-+.+ +.+-+|-|++++-
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y-tqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~s 423 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY-TQRIKEIDGNIRKQEQDIVKILEETRELQKQENSES 423 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887777777777777888888866665 4333 24677777766666666655 7888888888887
Q ss_pred HHH
Q psy5720 93 EAV 95 (153)
Q Consensus 93 e~l 95 (153)
++|
T Consensus 424 e~L 426 (521)
T KOG1937|consen 424 EAL 426 (521)
T ss_pred HHH
Confidence 776
No 150
>PF09686 Plasmid_RAQPRD: Plasmid protein of unknown function (Plasmid_RAQPRD); InterPro: IPR019110 This entry identifies a family of proteins, around 100 amino acids in length, that include a predicted signal sequence and a perfectly conserved motif, RAQPRD, towards the C terminus. They are found in the Pseudomonas putida TOL plasmid pWW0 and in cryptic plasmid regions of Salmonella enterica subsp. enterica serovar Typhi and Pseudomonas syringae pv. tomato str. DC3000. The function of these proteins is unknown.
Probab=46.83 E-value=1.1e+02 Score=22.28 Aligned_cols=35 Identities=26% Similarity=0.439 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHH
Q psy5720 64 KALETALKEAKEGAMK--------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 64 k~LE~aLkeakE~~~k--------~~~ryq~Ev~riKe~l~~~ 98 (153)
..||.++..|+..+.. |+.++...|.+|+.-+..-
T Consensus 21 d~l~~~~~rA~~~a~~~~~~R~~FdY~rl~~Dl~~ir~GI~~Y 63 (81)
T PF09686_consen 21 DQLEALLERAEAQANQSPSSRYYFDYPRLRADLERIRAGIQDY 63 (81)
T ss_pred HHHHHHHHHHHHhccCCCCCceeecHHHHHHHHHHHHHHHHHH
Confidence 4556666666655552 5566666677776655443
No 151
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.70 E-value=1.2e+02 Score=22.48 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLE-KRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klE-KrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
||+|..--+|-|+-=+-|.-|+..|. |.=..++| .+-++.+.|.+.+.+..+.+|...+-|++++
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e-----~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE-----VQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444555555555555554442 22222333 4556677788888888888888888888775
No 152
>KOG2077|consensus
Probab=46.54 E-value=52 Score=32.71 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy5720 60 MERVKALETALKEAKEGAMKD 80 (153)
Q Consensus 60 ~ERIk~LE~aLkeakE~~~k~ 80 (153)
-|+|+.||.-||.++..++-.
T Consensus 356 ee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 356 EEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578899999998888877654
No 153
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=46.30 E-value=1.1e+02 Score=22.18 Aligned_cols=46 Identities=24% Similarity=0.338 Sum_probs=23.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 49 LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+..||+.+..+.++...--.+-.+. +.+-.++.++.+++|....+.
T Consensus 17 id~LE~~v~~r~~~~~~~~~~e~ei-~~l~~dr~rLa~eLD~~~ar~ 62 (89)
T PF13747_consen 17 IDRLEKAVDRRLERDRKRDELEEEI-QRLDADRSRLAQELDQAEARA 62 (89)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHH-HHHHhhHHHHHHHHHhHHHHH
Confidence 4445555555555555543333333 444556666666666655444
No 154
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=45.90 E-value=1.2e+02 Score=28.53 Aligned_cols=49 Identities=14% Similarity=0.230 Sum_probs=38.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMK---------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k---------~~~ryq~Ev~riKe~l~~~ 98 (153)
..++-+|......+.++...|..++|.++. ||+-+..||+.+++.|-.-
T Consensus 67 ~~A~~~L~~~EstL~sv~~~L~rirel~VqA~Ngt~s~~dR~aia~El~~l~~qL~~l 124 (510)
T PRK12718 67 KQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGL 124 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666777888888888888877 8999999999999987554
No 155
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=45.75 E-value=76 Score=23.10 Aligned_cols=41 Identities=29% Similarity=0.545 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhhhhhhcchHH---HHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 31 LTKVHKQLVRDNADLRCELPK---LEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 31 LT~VhKQLV~dNa~Lk~El~k---lEKrL~ar~ERIk~LE~aLkeakE 75 (153)
.+.+|.++ .+|+.-+|. ++.||-+-..++..|++.+.+-+.
T Consensus 20 VdaLq~~V----~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 20 VDALQTQV----DDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHH----HHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 445555555 999999999999999987766553
No 156
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=45.65 E-value=1.8e+02 Score=24.55 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=12.7
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhcchHH
Q psy5720 25 ENNLDQLTKVHKQLVRDNADLRCELPK 51 (153)
Q Consensus 25 E~NLEQLT~VhKQLV~dNa~Lk~El~k 51 (153)
...++++..-.++|-..|..|+.+|+-
T Consensus 36 ~~dye~~l~e~~~l~~~i~~L~~~l~~ 62 (212)
T COG3599 36 IDDYEQLLDENEDLEDEIDELKEELKE 62 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555544444444444444444433
No 157
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=45.60 E-value=95 Score=24.75 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHK 36 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhK 36 (153)
.+++.-|...|.++-+.+=
T Consensus 73 e~~~~~l~~ELael~r~~~ 91 (194)
T PF08614_consen 73 EQKLAKLQEELAELYRSKG 91 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 4555555555555544443
No 158
>KOG0718|consensus
Probab=45.03 E-value=49 Score=31.87 Aligned_cols=56 Identities=23% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
++|-.|.++++||+.-+.- .-|-|..++-+.+.+++|||+.+|- ++.++.-.+..|
T Consensus 402 ~~k~~~~~~~~ek~~~~~~-------~Kk~eA~~av~LMq~t~~Ri~~~E~----~k~GLII~~A~Y 457 (546)
T KOG0718|consen 402 KRKKRERLLRREKLKDSVE-------AKKVEAERAVKLMQETAERIKKLEE----EKGGLIIEYAEY 457 (546)
T ss_pred hhHhHHHHHHHHHhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH----hcCceEEEEeee
Confidence 4555677888887754332 2356778888999999999998874 455555544444
No 159
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.92 E-value=85 Score=26.82 Aligned_cols=44 Identities=23% Similarity=0.332 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 49 LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
+..++..+.--.-||..||..|+--....+ =-.+|+.||+.|..
T Consensus 165 ~~~l~~~ierhk~Hi~kLE~lLR~L~N~~l-----~~e~V~~ikediey 208 (233)
T PF04065_consen 165 IEELESRIERHKFHIEKLELLLRLLDNDEL-----DPEQVEDIKEDIEY 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHH
Confidence 345666666667777777777764433322 12567788887754
No 160
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=44.85 E-value=1.9e+02 Score=24.31 Aligned_cols=73 Identities=25% Similarity=0.355 Sum_probs=54.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHhhhHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA-------MKDRKRYQYEVDRI 91 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~-------~k~~~ryq~Ev~ri 91 (153)
.=...+-..+|.+...|.+|... |..++..+++.....-++.+.+|..+.-++-.. ++-+++|++.-..+
T Consensus 60 ~a~~~~~~e~e~~a~~H~~ia~~---L~~~~~~l~~f~~~qke~rK~~e~~~eK~qk~~~~~~k~l~ksKk~Ye~~Cke~ 136 (242)
T cd07671 60 ASFDQLKQQIENIGNSHIQLAGM---LREELKSLEEFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREA 136 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444567799999999999864 444566688888888888899998887776533 44688898888777
Q ss_pred HHH
Q psy5720 92 KEA 94 (153)
Q Consensus 92 Ke~ 94 (153)
+.+
T Consensus 137 ~~a 139 (242)
T cd07671 137 DEA 139 (242)
T ss_pred HHH
Confidence 765
No 161
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=44.64 E-value=1.8e+02 Score=23.95 Aligned_cols=56 Identities=25% Similarity=0.426 Sum_probs=41.0
Q ss_pred HHHhhHHHHHHHHHHHHhh-h----hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRD-N----ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~d-N----a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
=|...-++|.+.+ +||.| | ..|.+.|..++.+|....++|+.||.-|.-+.-.+.+
T Consensus 97 el~k~~~~l~~L~-~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~r 157 (194)
T PF15619_consen 97 ELLKTKDELKHLK-KLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRR 157 (194)
T ss_pred HHHHHHHHHHHHH-HHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445556666654 45543 3 5788899999999999999999999988766655544
No 162
>KOG3564|consensus
Probab=44.50 E-value=1.4e+02 Score=29.03 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=32.8
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHH----------HHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAK----------EGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeak----------E~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
.+-+|.|+++++. .|+.-|+.|+ ..+-.|..+|+.++..|+|.|..--++
T Consensus 54 ~~~~L~Ka~tk~~-------~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~~~~~ 113 (604)
T KOG3564|consen 54 YKDLLAKAETKRS-------ALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKCDISG 113 (604)
T ss_pred HHHHHHHHHHhhh-------hccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccc
Confidence 3456677766654 3444444444 345558889999999999999654333
No 163
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.34 E-value=1.3e+02 Score=22.26 Aligned_cols=28 Identities=29% Similarity=0.462 Sum_probs=14.1
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
.+|+-++..++-.+.+.+++|+.++..+
T Consensus 68 ~~L~l~l~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 68 HDLQLELAELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544433
No 164
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=44.29 E-value=2e+02 Score=24.97 Aligned_cols=16 Identities=13% Similarity=0.625 Sum_probs=8.4
Q ss_pred hhhHHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEAV 95 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l 95 (153)
++.|.+..++.+++.+
T Consensus 292 E~~RW~~~~~~l~~~~ 307 (344)
T PF12777_consen 292 EKERWSEQIEELEEQL 307 (344)
T ss_dssp HHHCCHCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHh
Confidence 4555555555555443
No 165
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=43.75 E-value=1.3e+02 Score=22.30 Aligned_cols=49 Identities=22% Similarity=0.357 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG 76 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~ 76 (153)
+..++--+|=|-++|..|..++..| +.++....+-++.|+..+++.++.
T Consensus 61 frLaQl~ieYLl~~q~~L~~~~~~l-------~~~~~~~~~~~~~l~~~~~~~~~~ 109 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQLEQL-------EERLQELQQEIEKLKQKLKKQKEE 109 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888775544 555555555666666666655543
No 166
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=43.64 E-value=67 Score=22.23 Aligned_cols=26 Identities=31% Similarity=0.386 Sum_probs=16.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhh
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNAD 44 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~ 44 (153)
.++.-|+..+..++.|-..|-.-..+
T Consensus 19 ~q~~~l~~~~~~~~~~~~eL~~l~~~ 44 (106)
T PF01920_consen 19 QQIQQLERQLRELELTLEELEKLDDD 44 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 45666777777777777776644433
No 167
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=43.57 E-value=1.2e+02 Score=21.84 Aligned_cols=72 Identities=14% Similarity=0.386 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
||++-.==-.+..+.+.+|..-...|.++..-.-=+..+-.++-+-...-.+=+..|+.||.++|-.|.++.
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r~ 77 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQRG 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 344433333444555555555566677776665555566666666666666677899999999999887653
No 168
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=43.27 E-value=50 Score=22.69 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q psy5720 62 RVKALETALKEAKE 75 (153)
Q Consensus 62 RIk~LE~aLkeakE 75 (153)
|+..||.-|++++.
T Consensus 33 RLa~LE~rL~~ae~ 46 (60)
T PF11471_consen 33 RLAALEQRLQAAEQ 46 (60)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 169
>KOG0104|consensus
Probab=43.18 E-value=21 Score=35.99 Aligned_cols=74 Identities=22% Similarity=0.273 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHHHHHHhhh----hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy5720 12 GGSLAQRQKISFLENNLDQLTKVHKQLVRDN----ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQY 86 (153)
Q Consensus 12 ~gs~aQkQKiaFLE~NLEQLT~VhKQLV~dN----a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~ 86 (153)
||..-+..=..+|++...+.-+-. -.|+-| +.|.+|..++.-=|.|-.|.+-+.|++.-+-.=++---|..|+.
T Consensus 261 GG~e~~~rLr~~l~~~F~~~~k~~-~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEe 338 (902)
T KOG0104|consen 261 GGLEMTMRLRDHLANEFNEQHKTK-KDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEE 338 (902)
T ss_pred chHHHHHHHHHHHHHHHHHhcCCc-cccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHH
Confidence 565666666778887776655444 345555 78899999999999999999999999887665444444544444
No 170
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.17 E-value=1.8e+02 Score=23.61 Aligned_cols=70 Identities=24% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
+...-+++.++.|+.=...+-..-.+|++++..+..--..+.||-..|+. -+.+-.....++.|++...+
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~-----l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEE-----LEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh
No 171
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=42.85 E-value=2.5e+02 Score=25.24 Aligned_cols=71 Identities=14% Similarity=0.251 Sum_probs=33.4
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 25 E~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
.+-||.+.+-.|.|-.+...|-.|...+-.+|..--+..+.+-..+.+- .+.-.+...|++.+|..+..+.
T Consensus 251 ~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~----t~~L~~IseeLe~vK~emeerg 321 (359)
T PF10498_consen 251 SKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSER----TRELAEISEELEQVKQEMEERG 321 (359)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHhc
Confidence 4456666666665555554444444333333333333332222222111 1122345567777777776653
No 172
>PRK14161 heat shock protein GrpE; Provisional
Probab=42.79 E-value=1.2e+02 Score=24.67 Aligned_cols=15 Identities=33% Similarity=0.472 Sum_probs=9.1
Q ss_pred HhhhHHHHHHHHHHH
Q psy5720 79 KDRKRYQYEVDRIKE 93 (153)
Q Consensus 79 k~~~ryq~Ev~riKe 93 (153)
.-|+|++.|.+.++.
T Consensus 51 N~rkR~~ke~~~~~~ 65 (178)
T PRK14161 51 NTRKRLEKARDEAKD 65 (178)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666655
No 173
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=42.61 E-value=47 Score=24.28 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=27.0
Q ss_pred hhhhcch-----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCEL-----PKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 43 a~Lk~El-----~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
.-+|||. |..|++.....+-+..+|.+|..|++
T Consensus 30 ~~~kcE~~~e~~~~~~r~~~~~~~~~~~i~~~l~~A~~ 67 (121)
T PF08361_consen 30 LFHKCEYVEEMAPVRERRREAQREALARIERLLRRAQA 67 (121)
T ss_dssp HHHS--SSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4468877 88899999999999999999998886
No 174
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=42.30 E-value=2.2e+02 Score=25.71 Aligned_cols=82 Identities=30% Similarity=0.392 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHhhHHHHHHHH--HHHHhhh-------------------hhhhcch-------HHHHH-------HH
Q psy5720 12 GGSLAQRQKISFLENNLDQLTKVH--KQLVRDN-------------------ADLRCEL-------PKLEK-------RL 56 (153)
Q Consensus 12 ~gs~aQkQKiaFLE~NLEQLT~Vh--KQLV~dN-------------------a~Lk~El-------~klEK-------rL 56 (153)
|=+..==|||.-||.+||.|++-. ||+--|+ +.|+.|. ..+|+ -|
T Consensus 11 GL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 11 GLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 344555689999999999998753 3332222 2233332 22222 23
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 57 RATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 57 ~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
-.+---|.-||.-|.-++. +-.++++||-+.|..|+.
T Consensus 91 q~Ke~qv~~lEgQl~s~Kk----qie~Leqelkr~KsELEr 127 (307)
T PF10481_consen 91 QVKESQVNFLEGQLNSCKK----QIEKLEQELKRCKSELER 127 (307)
T ss_pred hhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 3334455666776666665 446778888888887753
No 175
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=42.21 E-value=1.2e+02 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=13.4
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 74 KEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 74 kE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
...+...-..++.++..+++.+...
T Consensus 384 ~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 384 KKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444445555555666666655544
No 176
>PF15456 Uds1: Up-regulated During Septation
Probab=42.09 E-value=67 Score=24.85 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=30.5
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKD 80 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~ 80 (153)
+=.+||+|+..|+.|+......+. ||.-+++|-.++++-
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l 61 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRL 61 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 346788888888888888888877 888888887777763
No 177
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.07 E-value=1.2e+02 Score=21.27 Aligned_cols=55 Identities=22% Similarity=0.281 Sum_probs=39.5
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe~l~~ 97 (153)
+.|..|-.+|.+.-..-++-|+.|-+.+++....+.. .......+++.+++++..
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~ 72 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR 72 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677788888888888888888888888777765554 444556677777766653
No 178
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=42.06 E-value=1.6e+02 Score=22.64 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=15.0
Q ss_pred hhhhhcchHHHHHHHHHhHHHH
Q psy5720 42 NADLRCELPKLEKRLRATMERV 63 (153)
Q Consensus 42 Na~Lk~El~klEKrL~ar~ERI 63 (153)
|.++...+.++...|.+...+|
T Consensus 92 ~~~~a~~~~~l~~~Le~ae~~~ 113 (139)
T PF13935_consen 92 NEDIALDVQKLRVELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777666666666
No 179
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.95 E-value=3e+02 Score=25.80 Aligned_cols=62 Identities=19% Similarity=0.304 Sum_probs=36.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
++.|+-++..+.+--.-..+|-.+=.+|+.|+..++..|+.+...++.++.-+.+..-.+.+
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~ 105 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNA 105 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence 34455555555544444444545556677777777777777776666666666555444433
No 180
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=41.84 E-value=3.3e+02 Score=26.34 Aligned_cols=89 Identities=18% Similarity=0.300 Sum_probs=48.3
Q ss_pred CCCCHHH---HHHHHHHHhhHHHHHHHHHHHHhhhhhhhc-------chHHHHHHHHHhHHHHHHHHHHHHH------HH
Q psy5720 11 DGGSLAQ---RQKISFLENNLDQLTKVHKQLVRDNADLRC-------ELPKLEKRLRATMERVKALETALKE------AK 74 (153)
Q Consensus 11 ~~gs~aQ---kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~-------El~klEKrL~ar~ERIk~LE~aLke------ak 74 (153)
.+.|... +..+.-|...+|.|+.=....|++|..|-. -|..+|++|.-..++......+|.. +=
T Consensus 76 a~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~ 155 (617)
T PF15070_consen 76 AGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATA 155 (617)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 3444433 345566777888888666666777765522 2233344444333333333333321 12
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 75 EGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 75 E~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
.+++.+|+.+.+++..+.++|-.-+
T Consensus 156 SRAlsQN~eLK~QL~Elq~~Fv~lt 180 (617)
T PF15070_consen 156 SRALSQNRELKEQLAELQDAFVKLT 180 (617)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3455677788888888877665443
No 181
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=41.32 E-value=60 Score=27.83 Aligned_cols=34 Identities=26% Similarity=0.301 Sum_probs=22.2
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ 57 (153)
|.+.-.+.++ -.++|..+|..||.|+..+...|.
T Consensus 57 ~~~~~~~~~~-~~~~l~~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 57 VFDGISENLK-DVNNLEYENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 346788999999999887754443
No 182
>KOG4001|consensus
Probab=41.16 E-value=2.5e+02 Score=24.69 Aligned_cols=73 Identities=25% Similarity=0.290 Sum_probs=48.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.|.-|.|+.-.-+|.--|-|-.+|-+|-.-++.+++++.+.--| +.|...-.-+++..|++.+|+.-++-
T Consensus 178 RKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r----------~~E~r~ieEkk~~eei~fLk~tN~qL 247 (259)
T KOG4001|consen 178 RKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIR----------SEEEREIEEKKMKEEIEFLKETNRQL 247 (259)
T ss_pred HHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh----------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888878888888888888888888887654322 11112223356666777777766555
Q ss_pred hhc
Q psy5720 99 NLA 101 (153)
Q Consensus 99 n~~ 101 (153)
.++
T Consensus 248 KaQ 250 (259)
T KOG4001|consen 248 KAQ 250 (259)
T ss_pred HHH
Confidence 443
No 183
>KOG4674|consensus
Probab=41.06 E-value=3e+02 Score=30.48 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+++-|+.+++-|+.=++-|+.--..|..|+..+......-.-.+..|++...+-.+..+.-+.+|+++++.+-..|
T Consensus 739 k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el 814 (1822)
T KOG4674|consen 739 KLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELEREL 814 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777766666666666666666766666666555556666777777777777777777776666554444
No 184
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=40.87 E-value=1.2e+02 Score=23.80 Aligned_cols=43 Identities=23% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHhHHHHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 55 RLRATMERVKALET---ALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 55 rL~ar~ERIk~LE~---aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
++..-+-=|++||+ +++....++..-++.++..++++|+.|..
T Consensus 41 K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~ 86 (162)
T PF05565_consen 41 KADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLD 86 (162)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 33334444445666777778888876643
No 185
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=40.67 E-value=58 Score=24.35 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=17.5
Q ss_pred HHHHHHH--------HhhHHHHHHHHHHHHhhhhhhhcch
Q psy5720 18 RQKISFL--------ENNLDQLTKVHKQLVRDNADLRCEL 49 (153)
Q Consensus 18 kQKiaFL--------E~NLEQLT~VhKQLV~dNa~Lk~El 49 (153)
=+|+++| |.++++|..-.+.|.++|..|+.++
T Consensus 33 E~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 33 ETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665 4556666655555555555555443
No 186
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=40.54 E-value=2.1e+02 Score=23.65 Aligned_cols=12 Identities=33% Similarity=0.390 Sum_probs=4.9
Q ss_pred HHHHHhhHHHHH
Q psy5720 21 ISFLENNLDQLT 32 (153)
Q Consensus 21 iaFLE~NLEQLT 32 (153)
+.-++.+|+++.
T Consensus 82 l~~a~a~l~~~~ 93 (334)
T TIGR00998 82 LAKAEANLAALV 93 (334)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 187
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=40.17 E-value=2.9e+02 Score=25.20 Aligned_cols=81 Identities=17% Similarity=0.253 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELP----KLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~----klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
.....+..+.+-+|++...++..+.+=.++=+++. .....|.... .+|+..|....+..-..+..++..++.+
T Consensus 320 ~~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~l~~~e---~~l~~~l~~~r~~~~~~~q~~E~~Ld~~ 396 (473)
T PF14643_consen 320 EFEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKKLSKQE---EELEKRLEQCREKHDQENQEKEAKLDIA 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 35667888888888888887776665544444442 2233333332 4677777778887788888888888888
Q ss_pred HHHHHHHh
Q psy5720 92 KEAVRQKN 99 (153)
Q Consensus 92 Ke~l~~~n 99 (153)
.++|++..
T Consensus 397 ~d~lRq~s 404 (473)
T PF14643_consen 397 LDRLRQAS 404 (473)
T ss_pred HHHHHhCC
Confidence 88887653
No 188
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=39.83 E-value=72 Score=23.60 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhhcchHHHHHHHHH
Q psy5720 34 VHKQLVRDNADLRCELPKLEKRLRA 58 (153)
Q Consensus 34 VhKQLV~dNa~Lk~El~klEKrL~a 58 (153)
-+..|+.+|..||.|-..-+-||++
T Consensus 47 ~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 47 QREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555554444443
No 189
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.49 E-value=1.4e+02 Score=24.63 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=13.1
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
.|+.|...++.-+..-.++++.||.-+
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~ 127 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKEL 127 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444444555555443
No 190
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=39.46 E-value=28 Score=25.83 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHH
Q psy5720 60 MERVKALETALKEAKE---GAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 60 ~ERIk~LE~aLkeakE---~~~k~~~ryq~Ev~riKe~l 95 (153)
.++|+.||.+++.+.. -++.++..+..||+-+++.|
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qv 40 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQV 40 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 4567777776654432 22345556666666665544
No 191
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=39.45 E-value=1.6e+02 Score=21.82 Aligned_cols=47 Identities=28% Similarity=0.365 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 61 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~E 61 (153)
..+.+.+.+++..|..+..=-.+|.+.|-+|=.|+-.+.++....-+
T Consensus 6 ~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~ 52 (106)
T PF05837_consen 6 LNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE 52 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 45677788888888777777778888888888888777776655544
No 192
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=39.44 E-value=65 Score=21.19 Aligned_cols=6 Identities=33% Similarity=0.883 Sum_probs=2.2
Q ss_pred hhhhhh
Q psy5720 40 RDNADL 45 (153)
Q Consensus 40 ~dNa~L 45 (153)
.+|.+|
T Consensus 38 ~e~~~L 43 (80)
T PF04977_consen 38 KENEEL 43 (80)
T ss_pred HHHHHH
Confidence 333333
No 193
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.31 E-value=1.2e+02 Score=20.42 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAVR 96 (153)
Q Consensus 82 ~ryq~Ev~riKe~l~ 96 (153)
..|+.+++.+.+.+.
T Consensus 49 ~~~~~~~~~l~~~l~ 63 (66)
T PF10458_consen 49 EELEEELEKLEEALE 63 (66)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345556666655543
No 194
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.29 E-value=1.3e+02 Score=20.96 Aligned_cols=54 Identities=24% Similarity=0.407 Sum_probs=36.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhh---hhhhcch----HHHHHHHHHhHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDN---ADLRCEL----PKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dN---a~Lk~El----~klEKrL~ar~ERIk~LE~aLk 71 (153)
+..|.-|.+|+++|...|.++.... ..++..| .....+-....++|+.|+....
T Consensus 14 ~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~ 74 (117)
T smart00503 14 RANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENL 74 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4567788999999999999998432 2343333 4455555666666777766543
No 195
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=39.19 E-value=1.2e+02 Score=20.49 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhHHHHHHHHH------HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHK------QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhK------QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
-.++++.|+..|+.-+.|-. ++...|.+. ..+..++..|...+.+|.-|-..|..-+
T Consensus 7 ~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~-~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 7 LQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK-KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899998888877765 334555544 6888999999999999998888776543
No 196
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=39.07 E-value=2.4e+02 Score=23.81 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=31.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHH
Q psy5720 56 LRATMERVKALETALKEAKEGAMK-DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 56 L~ar~ERIk~LE~aLkeakE~~~k-~~~ryq~Ev~riKe~l~~~ 98 (153)
+.+=+++...||..++++-..++. +|+||=.=|+...-.+...
T Consensus 158 ~e~v~~k~~ele~~~~~~lr~al~EERrRyc~lv~~~c~v~~~e 201 (223)
T cd07605 158 LEELNDKQKELEAFVSQGLRDALLEERRRYCFLVDKHCSVAKHE 201 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566778888888887666665 8999988888877666543
No 197
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=38.99 E-value=1.4e+02 Score=21.17 Aligned_cols=55 Identities=15% Similarity=0.267 Sum_probs=40.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+.+.+|...|... |++|+.+.++-+-++.-+..|...-++|......|..-++..
T Consensus 28 ~~~~~lk~Klq~a----r~~i~~lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 28 TATGSLKHKLQKA----RAAIRELPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHH----HHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566677666655 577888888888888888888777777777777777666543
No 198
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.91 E-value=71 Score=23.65 Aligned_cols=48 Identities=25% Similarity=0.427 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 47 CELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 47 ~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
.|+..+|.+|..--.|+..+|.-|....- -..+|+.++.|+..|++.+
T Consensus 5 ~eId~lEekl~~cr~~le~ve~rL~~~eL-s~e~R~~lE~E~~~l~~~l 52 (85)
T PF15188_consen 5 KEIDGLEEKLAQCRRRLEAVESRLRRREL-SPEARRSLEKELNELKEKL 52 (85)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHcccCC-ChHHHHHHHHHHHHHHHHh
Confidence 45666777777777777777776654332 1235666667777776655
No 199
>PHA02629 A-type inclusion body protein; Provisional
Probab=38.59 E-value=45 Score=23.39 Aligned_cols=25 Identities=44% Similarity=0.569 Sum_probs=19.5
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aL 70 (153)
|+-++.+|.-|+..+|-|+.||.-+
T Consensus 32 rk~iavleaelr~~metik~lekf~ 56 (61)
T PHA02629 32 RKIIAVLEAELRKSMETIKALEKFM 56 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888899999999998743
No 200
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=38.45 E-value=2.2e+02 Score=23.28 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 65 ALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 65 ~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
..+.++.+.+.+.--.+--++..|..+-+.+..+.+
T Consensus 129 kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 129 KFESAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666777777777665544
No 201
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=38.41 E-value=1.3e+02 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.320 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q psy5720 60 MERVKALETALKE 72 (153)
Q Consensus 60 ~ERIk~LE~aLke 72 (153)
+..|..|..-...
T Consensus 16 ~~kvdqLs~dv~~ 28 (56)
T PF04728_consen 16 NSKVDQLSSDVNA 28 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 202
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=38.22 E-value=4e+02 Score=26.19 Aligned_cols=25 Identities=40% Similarity=0.531 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 48 ELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 48 El~klEKrL~ar~ERIk~LE~aLke 72 (153)
-+.-|||||..-.+.=.+||.-|.+
T Consensus 489 ~l~~LEkrL~eE~~~R~~lEkQL~e 513 (697)
T PF09726_consen 489 SLQQLEKRLAEERRQRASLEKQLQE 513 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666655555555655544
No 203
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.20 E-value=4.7e+02 Score=26.98 Aligned_cols=14 Identities=50% Similarity=0.570 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAV 95 (153)
Q Consensus 82 ~ryq~Ev~riKe~l 95 (153)
...+.+++.++..+
T Consensus 937 ~~~~~~~~~~~~~~ 950 (1311)
T TIGR00606 937 KKAQDKVNDIKEKV 950 (1311)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 204
>KOG0999|consensus
Probab=37.95 E-value=1.6e+02 Score=29.40 Aligned_cols=16 Identities=56% Similarity=0.486 Sum_probs=10.1
Q ss_pred HHHHHHHHHhhHHHHH
Q psy5720 17 QRQKISFLENNLDQLT 32 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT 32 (153)
.-+||.-||+.|-||.
T Consensus 105 yl~kI~eleneLKq~r 120 (772)
T KOG0999|consen 105 YLQKILELENELKQLR 120 (772)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3467777777766554
No 205
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=37.90 E-value=2e+02 Score=22.59 Aligned_cols=41 Identities=15% Similarity=0.311 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 59 TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 59 r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
+.+||..++..+.+++...-.-+++|+.=-+.+|..+...+
T Consensus 161 ~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~ 201 (236)
T PF09325_consen 161 RQDKVEQAENEIEEAERRVEQAKDEFEEISENIKKELERFE 201 (236)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888887777766777666666666555443
No 206
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=37.87 E-value=59 Score=22.34 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=17.9
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkea 73 (153)
++-.-|..||+||.....|.+.-|.-++.+
T Consensus 29 tiEqRLa~LE~rL~~ae~ra~~ae~~~~~~ 58 (60)
T PF11471_consen 29 TIEQRLAALEQRLQAAEQRAQAAEARAKQA 58 (60)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666777766666666666655443
No 207
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=37.82 E-value=1.1e+02 Score=29.89 Aligned_cols=54 Identities=28% Similarity=0.471 Sum_probs=35.2
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHhh---hHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAK-------EGAMKDR---KRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeak-------E~~~k~~---~ryq~Ev~riKe~l~~ 97 (153)
|+..|+++|+|+|..-..-|..++..|.... +-.-+++ ..|+.++..+++.+..
T Consensus 808 d~~~e~~rL~K~l~kl~~ei~~~~~kL~n~~F~~KAP~~vve~e~~kl~~~~~~~~~l~~~l~~ 871 (874)
T PRK05729 808 DVEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAEYEEKLAKLKERLAR 871 (874)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888777888887775422 1111233 4477788888777653
No 208
>KOG3876|consensus
Probab=37.80 E-value=31 Score=31.17 Aligned_cols=19 Identities=47% Similarity=0.728 Sum_probs=15.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLV 39 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV 39 (153)
=||.|||.| .+.-+|+||+
T Consensus 282 iKmkfLeEN--rIkVmh~QL~ 300 (341)
T KOG3876|consen 282 IKMKFLEEN--RIKVMHKQLE 300 (341)
T ss_pred HHHHHHHhh--hHHHHHHHHH
Confidence 478999888 4677899987
No 209
>KOG4196|consensus
Probab=37.76 E-value=1.1e+02 Score=24.66 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 58 ATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 58 ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
|-+=|||-+.+ ++.+-+++..+++||+.+++.+...
T Consensus 65 A~sCR~KRv~Q-----k~eLE~~k~~L~qqv~~L~~e~s~~ 100 (135)
T KOG4196|consen 65 AQSCRVKRVQQ-----KHELEKEKAELQQQVEKLKEENSRL 100 (135)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557777766 6777777777777777777755433
No 210
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=37.63 E-value=75 Score=24.99 Aligned_cols=31 Identities=39% Similarity=0.456 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRA 58 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~a 58 (153)
|.-|..+=.-||++|+.|+-|..+|-+||..
T Consensus 24 l~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 24 LGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 3344444556778999999999888888865
No 211
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=37.43 E-value=87 Score=23.22 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=15.0
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
|.-||.-++---..-.-|..+|..|+.|+..|-
T Consensus 5 I~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr 37 (86)
T PF12711_consen 5 IKRLEKLLDGKLPSESYLEEENEALKEEIQLLR 37 (86)
T ss_pred HHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Confidence 333333333333333344555566666654444
No 212
>KOG0642|consensus
Probab=37.41 E-value=32 Score=33.34 Aligned_cols=35 Identities=40% Similarity=0.580 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
-|-.|+|||..---+.+...+||+ ||+.||-+|+|
T Consensus 46 lqariAfLqgErk~qenlk~dl~r---------------------R~kmlE~~lke 80 (577)
T KOG0642|consen 46 LQARIAFLQGERKGQENLKMDLVR---------------------RIKMLEFALKE 80 (577)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHH---------------------HHhcccchhHH
Confidence 356778887544444444455655 77788887765
No 213
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=37.33 E-value=2.2e+02 Score=22.96 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=28.4
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ 85 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq 85 (153)
.++=.+...-+.++...|++|..+.+.+..-...|......+......+.
T Consensus 67 ~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~ 116 (201)
T PF12072_consen 67 QELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELE 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566667777777777666555555555555555544444433
No 214
>KOG0161|consensus
Probab=37.31 E-value=3.6e+02 Score=29.94 Aligned_cols=14 Identities=36% Similarity=0.679 Sum_probs=5.3
Q ss_pred HHhhHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQ 37 (153)
Q Consensus 24 LE~NLEQLT~VhKQ 37 (153)
++.+++.|++-.|.
T Consensus 976 ~~e~~~kL~kekk~ 989 (1930)
T KOG0161|consen 976 LDENISKLSKEKKE 989 (1930)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 215
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=37.30 E-value=1.9e+02 Score=26.43 Aligned_cols=55 Identities=16% Similarity=0.153 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhHHHHH----HHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLT----KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT----~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
|.++..-|+..|+++. ..+.+|......+...+..+|.++......+.+|+..+.
T Consensus 65 ~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~ 123 (390)
T PRK10920 65 QTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAALAKQLDELQQKVA 123 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554442 223445555555555555555555555555555544443
No 216
>PF07324 DGCR6: DiGeorge syndrome critical region 6 (DGCR6) protein; InterPro: IPR010849 This family contains DiGeorge syndrome critical region 6 (DGCR6) proteins (approximately 200 residues long) of a number of vertebrates. DGCR6 is a candidate for involvement in the DiGeorge syndrome pathology by playing a role in neural crest cell migration into the third and fourth pharyngeal pouches, the structures from which derive the organs affected in DiGeorge syndrome []. Also found in this family is the Drosophila melanogaster gonadal protein gdl.
Probab=37.25 E-value=2.5e+02 Score=23.65 Aligned_cols=89 Identities=21% Similarity=0.241 Sum_probs=53.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHH--hhhhhhhcchHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 8 SEDDGGSLAQRQKISFLENNLDQLTKVHKQLV--RDNADLRCELPKLEKRLRA-TMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 8 ~~~~~gs~aQkQKiaFLE~NLEQLT~VhKQLV--~dNa~Lk~El~klEKrL~a-r~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
+++......|++|+-||-+.|-.+...-.--. +=+.+|-++|+. ..|-. =-|-|+.|...=.-.--.++.+|.++
T Consensus 9 ~~~~~~~~~~q~r~y~ll~~Lq~~~~~lp~~~Q~ri~~~lL~~La~--~LldgtIFeiV~~L~eiQ~~~Ek~L~~qR~~L 86 (196)
T PF07324_consen 9 EENAADRERQQRRHYFLLSELQEMVQELPPSYQQRISYELLSDLAN--SLLDGTIFEIVKGLLEIQHLTEKNLLQQRLKL 86 (196)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHccHHHHccCCHHHHHHHHH--HHccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788899999998665555543322111 224566666542 23332 24677777776665666677777777
Q ss_pred HHHHHHHHHHHHHH
Q psy5720 85 QYEVDRIKEAVRQK 98 (153)
Q Consensus 85 q~Ev~riKe~l~~~ 98 (153)
..+...-+..+..+
T Consensus 87 ~~~h~~e~~~l~~k 100 (196)
T PF07324_consen 87 LNEHKIEKQELRQK 100 (196)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766665555544
No 217
>KOG0994|consensus
Probab=37.20 E-value=4.3e+02 Score=28.88 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhHHHHHHHH----HHHHh---------h-hhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVH----KQLVR---------D-NADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~Vh----KQLV~---------d-Na~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
-++++.-+..+|++-+..| ..+-. + =++.+.+..-+|+.+.+.++||..||..+.+-|-++++
T Consensus 1561 v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1561 VKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777777654332 22211 1 15567788999999999999999999999988887776
No 218
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=36.49 E-value=65 Score=24.36 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=26.7
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
.=|.+..-|||-+..++|..+=...+++|..+|+.|
T Consensus 64 ~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le~~I 99 (100)
T PF04568_consen 64 QYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELEKHI 99 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346788888888888888776666777777777654
No 219
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=36.05 E-value=2e+02 Score=23.48 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=35.8
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
+.|-.-||+...+..+|-.|+..|+.++..+-.-|..+-...+.=|.
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~ 130 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEE 130 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45888899999999999999999988888877666666554444443
No 220
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.78 E-value=2.4e+02 Score=25.13 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=9.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 51 KLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLkea 73 (153)
+.+++|..-.+.+.++|.-+.++
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 33334444344444444433333
No 221
>KOG0980|consensus
Probab=35.56 E-value=4.5e+02 Score=27.36 Aligned_cols=40 Identities=25% Similarity=0.413 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
.++++++.=|-..+.+|-.+|--|.+.|.+.-+.+...+.
T Consensus 420 l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~ 459 (980)
T KOG0980|consen 420 LAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQ 459 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777888888888888888887776654443
No 222
>KOG1899|consensus
Probab=35.47 E-value=2.3e+02 Score=28.72 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=51.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5720 6 NESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ 85 (153)
Q Consensus 6 ~~~~~~~gs~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq 85 (153)
++.+..++....|.+++-||+.=| +|--.+..|--+..|..|-|+.||..|.+-++++-.--.-+|
T Consensus 98 ~~~~s~~~~~~yQerLaRLe~dke--------------sL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQ 163 (861)
T KOG1899|consen 98 MSTVSCPEYPEYQERLARLEMDKE--------------SLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQ 163 (861)
T ss_pred CCCccCCcchHHHHHHHHHhcchh--------------hheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHH
Confidence 444555677778888887776554 444567778888899999999999999988887766555556
Q ss_pred HHHHHH
Q psy5720 86 YEVDRI 91 (153)
Q Consensus 86 ~Ev~ri 91 (153)
+|+-++
T Consensus 164 qellsr 169 (861)
T KOG1899|consen 164 QELLSR 169 (861)
T ss_pred HHHHhh
Confidence 554433
No 223
>PRK14692 lagellar hook-associated protein FlgL; Provisional
Probab=35.46 E-value=4.7e+02 Score=26.22 Aligned_cols=82 Identities=18% Similarity=0.286 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH--------hhh-------hhhhcchH----------HHHHHHHHhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLV--------RDN-------ADLRCELP----------KLEKRLRATMERVKALETALK 71 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV--------~dN-------a~Lk~El~----------klEKrL~ar~ERIk~LE~aLk 71 (153)
..+=+.-|.++...|.+++.||. .|+ -.|+.++. .+..+|....--+.++..+|.
T Consensus 9 y~~~l~nLq~~qs~L~klqeQLSSGkrI~~pSDDPaaa~~alrL~s~i~~l~Qy~~Ni~~A~s~L~~tEtaL~sI~~iLq 88 (749)
T PRK14692 9 FTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLE 88 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccCChhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777788877775 121 12444443 344566666667778888888
Q ss_pred HHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Q psy5720 72 EAKEGAMK---------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 72 eakE~~~k---------~~~ryq~Ev~riKe~l~~~ 98 (153)
.++|.++. +|..+..||+.+++.|-.-
T Consensus 89 r~ReLaVqAaNGT~S~~dR~AIA~El~~L~eqLl~i 124 (749)
T PRK14692 89 DFKVKVTQAASDSNSQTSREAIAKELERIKESIVQL 124 (749)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99987775 7889999999999988554
No 224
>PRK02119 hypothetical protein; Provisional
Probab=35.33 E-value=1.6e+02 Score=20.71 Aligned_cols=47 Identities=13% Similarity=0.280 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHh
Q psy5720 53 EKRLRATMERVKALETALKEAKEGAMKDR---KRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 53 EKrL~ar~ERIk~LE~aLkeakE~~~k~~---~ryq~Ev~riKe~l~~~n 99 (153)
|.||..=-+||-=+|.++.+=.+-+.++. .+++.++..+.++++...
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333444444444444444444433 667777787777776653
No 225
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=35.33 E-value=1.3e+02 Score=27.06 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 71 KEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 71 keakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+....+......+..++..+++.+..-
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666667777777776666543
No 226
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=35.31 E-value=1.6e+02 Score=20.84 Aligned_cols=60 Identities=23% Similarity=0.328 Sum_probs=39.4
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
..|-.+|=+||-.+--+|.+|....+ ...+.++++.=+ +--+....+.|++..+..|..+
T Consensus 10 ~~L~KENF~LKLrI~fLee~l~~~~~--~~~~~~~keNie-LKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 10 DKLKKENFNLKLRIYFLEERLQKLGP--ESIEELLKENIE-LKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhccc--ccHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999985443 344555555444 3335566666666666666544
No 227
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=35.30 E-value=83 Score=22.15 Aligned_cols=36 Identities=36% Similarity=0.404 Sum_probs=24.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
...+..+...++++.+-+.+|-.+|..|+-|+..+.
T Consensus 34 ~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 34 RHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555666677777777777777777777766554
No 228
>KOG0996|consensus
Probab=35.14 E-value=2.9e+02 Score=29.48 Aligned_cols=47 Identities=28% Similarity=0.385 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 47 CELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 47 ~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
..+..+|+-...+-+-+..|...++...+.+.....+|..=.+.|+|
T Consensus 942 ~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E 988 (1293)
T KOG0996|consen 942 KKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKE 988 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555555544444443333333
No 229
>KOG3915|consensus
Probab=34.95 E-value=2.8e+02 Score=27.11 Aligned_cols=52 Identities=23% Similarity=0.440 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
-+|...--.||+--+-++||.|+-+ |+-|+..-||+...|.-|+.-=++-++
T Consensus 515 a~dnar~qekQiq~Ek~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 515 AIDNARAQEKQIQLEKTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456776677777777754 677888888888887766654444333
No 230
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=34.91 E-value=71 Score=26.44 Aligned_cols=12 Identities=25% Similarity=0.418 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q psy5720 84 YQYEVDRIKEAV 95 (153)
Q Consensus 84 yq~Ev~riKe~l 95 (153)
++.|.+++|+.|
T Consensus 98 l~~en~~L~~lL 109 (276)
T PRK13922 98 LEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHh
Confidence 344455555544
No 231
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.71 E-value=2.4e+02 Score=22.55 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=11.8
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQL 38 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQL 38 (153)
|.||..+++.|.+--.+|
T Consensus 96 ie~l~k~~~~l~~~~~~l 113 (145)
T COG1730 96 IEFLKKRIEELEKAIEKL 113 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777777654443
No 232
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=34.66 E-value=1.4e+02 Score=19.95 Aligned_cols=37 Identities=30% Similarity=0.583 Sum_probs=27.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhh---hhhcchHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNA---DLRCELPKLEK 54 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa---~Lk~El~klEK 54 (153)
+..|.-|+.++++|...|+..+.... .++.|+..+-.
T Consensus 13 ~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~ 52 (103)
T PF00804_consen 13 REDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTD 52 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHH
Confidence 46788999999999999998884443 46666655543
No 233
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=34.55 E-value=73 Score=21.04 Aligned_cols=29 Identities=28% Similarity=0.489 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
-+++|..--..|..+|..|+.++..|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556667777777666666553
No 234
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=34.44 E-value=20 Score=31.78 Aligned_cols=14 Identities=43% Similarity=0.439 Sum_probs=11.6
Q ss_pred hhhheeeecCCccC
Q psy5720 138 ERKRKVIMGGGATR 151 (153)
Q Consensus 138 ~~~~~~~~~~~~~~ 151 (153)
.=|++|||||+.+.
T Consensus 143 ~ik~iviMGGa~~~ 156 (311)
T COG1957 143 RIKEIVIMGGAFFV 156 (311)
T ss_pred hhcEEEEecCccCC
Confidence 44789999999876
No 235
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=34.42 E-value=1.8e+02 Score=22.80 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
..|+.|+....-||+.||. |+ ++.+.+++.++..+..+...
T Consensus 73 ~eL~er~E~Le~ri~tLek-----Qe------~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 73 DELEERKETLELRIKTLEK-----QE------EKLQERLEELQSEIQKALGD 113 (119)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HH------HHHHHHHHHHHHHHHHHhhc
Confidence 4455666666666666665 33 56677788888888776443
No 236
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=34.35 E-value=1.6e+02 Score=20.74 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=21.7
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
|-|......-|..+-++|.+||.-|.+
T Consensus 49 REEFd~q~~~L~~~r~kl~~LEarl~~ 75 (79)
T PF04380_consen 49 REEFDAQKAVLARTREKLEALEARLAA 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888888888888887754
No 237
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=34.18 E-value=2.6e+02 Score=22.84 Aligned_cols=54 Identities=11% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHhhh-hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy5720 36 KQLVRDN-ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD 89 (153)
Q Consensus 36 KQLV~dN-a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ 89 (153)
..++..+ ..|.....-+++++..-.++|..||..|..-.+.+.++.-.++.-|.
T Consensus 181 ~~~~~~~~G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~me~~i~ 235 (239)
T PF07195_consen 181 DSYTGSSTGSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSAMESLIS 235 (239)
T ss_pred HHHhCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 66777777777777777777777777766665555555444444433
No 238
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.17 E-value=3.2e+02 Score=23.90 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=45.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH-hhhhhhhcchHHHHHHHHHhHHHHHH--HHHHHHHHHHHH---HHhhhHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLV-RDNADLRCELPKLEKRLRATMERVKA--LETALKEAKEGA---MKDRKRYQYEVDRI 91 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV-~dNa~Lk~El~klEKrL~ar~ERIk~--LE~aLkeakE~~---~k~~~ryq~Ev~ri 91 (153)
-=.|+-|.++|++|..-|..=. .=|--.+.++..++++.-...+.|.+ .+.++.--++.+ +.+|...+.|++.-
T Consensus 119 ~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~ 198 (258)
T PF15397_consen 119 AVQIANLVRQLQQLKDSQQDELDELNEMRQMELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQF 198 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999988776433 33455667778888877766665543 233333222222 23566555555555
Q ss_pred HH
Q psy5720 92 KE 93 (153)
Q Consensus 92 Ke 93 (153)
|+
T Consensus 199 re 200 (258)
T PF15397_consen 199 RE 200 (258)
T ss_pred HH
Confidence 54
No 239
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.17 E-value=3.3e+02 Score=26.42 Aligned_cols=60 Identities=32% Similarity=0.437 Sum_probs=37.5
Q ss_pred HHHHHHhhHHHHH----------------HHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLT----------------KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 20 KiaFLE~NLEQLT----------------~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
.+.=||+.|.+|. -+..+|-.+=..|++|+..++.+|.+-.+.-..|..+..+-.+++.-
T Consensus 51 ~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~E 126 (617)
T PF15070_consen 51 RVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAE 126 (617)
T ss_pred HHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666654 23334444445688888888888887766666666655565555553
No 240
>PRK14158 heat shock protein GrpE; Provisional
Probab=34.10 E-value=1.9e+02 Score=24.08 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHHH
Q psy5720 10 DDGGSLAQRQKISFLENNLDQLTKVHKQL 38 (153)
Q Consensus 10 ~~~gs~aQkQKiaFLE~NLEQLT~VhKQL 38 (153)
++..+.+.-..+..|+..|+.|..-...|
T Consensus 31 ~~~~~~~~~~~~~~le~~l~~le~e~~el 59 (194)
T PRK14158 31 EAAQPVAAADRIKELEEALAAKEAEAAAN 59 (194)
T ss_pred CcCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777776665443333
No 241
>PF12474 PKK: Polo kinase kinase ; InterPro: IPR022165 This domain family is found in eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00069 from PFAM. Polo-like kinase 1 (Plx1) is essential during mitosis for the activation of Cdc25C, for spindle assembly, and for cyclin B degradation. This family is Polo kinase kinase (PKK) which phosphorylates Polo kinase and Polo-like kinase to activate them. PKK is a serine/threonine kinase. ; GO: 0004674 protein serine/threonine kinase activity
Probab=33.89 E-value=2.3e+02 Score=22.23 Aligned_cols=67 Identities=25% Similarity=0.313 Sum_probs=39.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhh-hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDN-ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dN-a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
+..+-+..||+|...|++.+++= .+.-.|+-.+-|++++-.+ .-|.-=++++=...+...++++.++
T Consensus 20 l~k~~d~ElE~l~r~qk~~iE~le~~q~~e~r~~~KriR~Eq~------~~l~~FkesLk~~~k~~k~e~ekl~ 87 (142)
T PF12474_consen 20 LKKRYDKELEQLERQQKQQIEKLEQRQTQERRRLPKRIRAEQK------KRLAMFKESLKIEKKELKQEVEKLP 87 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhccCchHHHHHHhH
Confidence 44555778999999999999643 4555555556666665554 2233333333333334455555554
No 242
>KOG3156|consensus
Probab=33.78 E-value=1.7e+02 Score=25.32 Aligned_cols=23 Identities=39% Similarity=0.417 Sum_probs=12.5
Q ss_pred HHHHHHHHhhhhhhhcchHHHHH
Q psy5720 32 TKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 32 T~VhKQLV~dNa~Lk~El~klEK 54 (153)
++|--|+-.+-+.+|+|+-.+|+
T Consensus 93 ~~v~~QQ~~~f~kiRsel~S~e~ 115 (220)
T KOG3156|consen 93 EKVSYQQKVDFAKIRSELVSIER 115 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666666655554
No 243
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.74 E-value=1.1e+02 Score=24.17 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=5.3
Q ss_pred HHHhhHHHHHH
Q psy5720 23 FLENNLDQLTK 33 (153)
Q Consensus 23 FLE~NLEQLT~ 33 (153)
-|+..|++|..
T Consensus 15 ~L~~EL~~L~~ 25 (158)
T PRK05892 15 HLEAELARLRA 25 (158)
T ss_pred HHHHHHHHHHH
Confidence 34455555544
No 244
>KOG1151|consensus
Probab=33.64 E-value=1.6e+02 Score=28.99 Aligned_cols=50 Identities=34% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhh----HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHH
Q psy5720 15 LAQRQKISFLENN----LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 64 (153)
Q Consensus 15 ~aQkQKiaFLE~N----LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk 64 (153)
..+.-||+-||++ ||.-+-----|.+-|-|||..+..+.+-|...-||..
T Consensus 225 dlt~~k~~alE~~k~~DlEkkegriddllRancDlRRQIdEqqk~LEkyKerln 278 (775)
T KOG1151|consen 225 DLTIEKISALENSKNSDLEKKEGRIDDLLRANCDLRRQIDEQQKMLEKYKERLN 278 (775)
T ss_pred hhhHHHHHHHhhcccchhhhhcchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777765 2222222234667777777777766666665555543
No 245
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=33.54 E-value=1.3e+02 Score=28.36 Aligned_cols=31 Identities=26% Similarity=0.384 Sum_probs=24.5
Q ss_pred hhhhhcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 42 NADLRCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 42 Na~Lk~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
...++.++..+|+.+..--++|..||..|.+
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3556667888888888888888888888854
No 246
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.51 E-value=4.5e+02 Score=25.38 Aligned_cols=45 Identities=27% Similarity=0.361 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 60 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ 60 (153)
.+.+.+.-|+.-|++|-..-..+-.+-..|+.++..++..+....
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~ 369 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKE 369 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555444333333333444444444333333333
No 247
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=33.42 E-value=2.3e+02 Score=22.04 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=11.1
Q ss_pred HHHHHHHHhhHHHHHH
Q psy5720 18 RQKISFLENNLDQLTK 33 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~ 33 (153)
+.|+.-||..||++..
T Consensus 41 ~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 41 QKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4677777777777654
No 248
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.30 E-value=3.4e+02 Score=27.93 Aligned_cols=72 Identities=19% Similarity=0.253 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHh
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK--DRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k--~~~ryq~Ev~riKe~l~~~n 99 (153)
++.+..--.++-.+-+.+..++..+|-+|....+.+..++.-|...++.+.. +..-|...|...++.++.+.
T Consensus 579 ~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 579 LHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 3333333334445556666777777777777777777777777777776664 44567777777777776554
No 249
>KOG0249|consensus
Probab=32.93 E-value=1.7e+02 Score=29.90 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=49.1
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh--HHHHHHHHHHHHH-----------------HHHHHHHhhh
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT--MERVKALETALKE-----------------AKEGAMKDRK 82 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar--~ERIk~LE~aLke-----------------akE~~~k~~~ 82 (153)
.-||++|+.=..-+.|+-+-|..|..-|..+|.+|-.+ +|-.-.+|+-|.. .=+++..+.+
T Consensus 94 dklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~q 173 (916)
T KOG0249|consen 94 DKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLE 173 (916)
T ss_pred HHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 45889998888888888889999988888888887544 3333334443321 1122333566
Q ss_pred HHHHHHHHHHHHHH
Q psy5720 83 RYQYEVDRIKEAVR 96 (153)
Q Consensus 83 ryq~Ev~riKe~l~ 96 (153)
+..+|+.+.+.+++
T Consensus 174 e~naeL~rarqree 187 (916)
T KOG0249|consen 174 ELNAELQRARQREK 187 (916)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777765543
No 250
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=32.59 E-value=3.6e+02 Score=24.01 Aligned_cols=66 Identities=21% Similarity=0.293 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHH----H---------------------HHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720 13 GSLAQRQKISFLENNLDQLTKVH----K---------------------QLVRDNADLRCELPKLEKRLRATMERVKALE 67 (153)
Q Consensus 13 gs~aQkQKiaFLE~NLEQLT~Vh----K---------------------QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE 67 (153)
+..+|+..|+=|+..++.|..-. . +..++++.+..+|...+.+|....+.+...-
T Consensus 82 si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~k~~~~q 161 (301)
T PF06120_consen 82 SIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQSKASETQ 161 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777776666554322 2 3455667777888888888888888888887
Q ss_pred HHHHHHHHHHH
Q psy5720 68 TALKEAKEGAM 78 (153)
Q Consensus 68 ~aLkeakE~~~ 78 (153)
.+|.+..+...
T Consensus 162 ~~l~~~~~~~~ 172 (301)
T PF06120_consen 162 ATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHH
Confidence 78877766665
No 251
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=32.45 E-value=3e+02 Score=24.92 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=15.4
Q ss_pred HHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 38 LVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 38 LV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|-.+|..|++|-. -+-=.+.+||++|.-.+.
T Consensus 23 lE~QldkLkKE~q-------QrQfQleSlEAaLqKQKq 53 (307)
T PF10481_consen 23 LEQQLDKLKKERQ-------QRQFQLESLEAALQKQKQ 53 (307)
T ss_pred HHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHH
Confidence 3445556666542 222334566666654443
No 252
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=32.40 E-value=1.3e+02 Score=25.00 Aligned_cols=60 Identities=17% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHhhhhhhhcchHHHHHHHHHhH---HHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLRATM---ERVKALETALK-------EAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~ar~---ERIk~LE~aLk-------eakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+....++|+..|-.+..++...- ++.+.|+.+|. .-|+++...+--++.||++++--|.
T Consensus 139 e~~~rY~~l~~~L~~l~~~r~~~~~rl~~lr~L~~lLepf~~~~~~IQ~NLvtr~g~l~~El~rmR~Lla 208 (213)
T PF13093_consen 139 EEAERYAELRERLIELSEQRQYLQQRLEYLRRLRSLLEPFDSPQENIQPNLVTRDGELEAELERMRMLLA 208 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccccccccCCCCchHHHHHHHHHHHHH
Confidence 344556666666666666655544 44455555552 2366777778889999999976554
No 253
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=32.34 E-value=1.3e+02 Score=22.96 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=29.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy5720 54 KRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDR 90 (153)
Q Consensus 54 KrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~r 90 (153)
+.-.++|+|++.+...|+.--|.+-.....+++.|+.
T Consensus 60 ~~Yv~~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 60 RTYVAMNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456788899999988888888887788888877764
No 254
>PRK09866 hypothetical protein; Provisional
Probab=32.29 E-value=5.4e+02 Score=25.99 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=18.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLV 39 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV 39 (153)
=|++|.-||+.|.+|..-|++--
T Consensus 451 L~~~I~~~e~d~~~l~~~q~~~~ 473 (741)
T PRK09866 451 LRQNIHQVEESLQLLQLNQAQVS 473 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999988877654
No 255
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=32.25 E-value=2.3e+02 Score=27.15 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=10.1
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 47 CELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 47 ~El~klEKrL~ar~ERIk~LE~aL 70 (153)
..+..+|.+|......+.+||..+
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~ 408 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQY 408 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 256
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=32.23 E-value=3.1e+02 Score=23.06 Aligned_cols=58 Identities=26% Similarity=0.397 Sum_probs=38.5
Q ss_pred hhh-hhhhcchHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 40 RDN-ADLRCELPKLEKRLRATMERVKAL----ETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 40 ~dN-a~Lk~El~klEKrL~ar~ERIk~L----E~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
..| ..||..+.....+|..-..|.++| |.-|..|.+.+..-++.++.|+-+++-.|+.
T Consensus 110 k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk 172 (207)
T PF05010_consen 110 KKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK 172 (207)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345 566777777777777777777766 5556666776777777777777666655543
No 257
>KOG0962|consensus
Probab=31.90 E-value=3.9e+02 Score=28.64 Aligned_cols=59 Identities=22% Similarity=0.304 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
|-+++...+-+|++| +.|.++=-.++.-+...++++....|+|..||.-+.+....+-.
T Consensus 197 ~~~evk~~~~~l~~l----k~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~e 255 (1294)
T KOG0962|consen 197 QSQEVKTKKQELEHL----KTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEE 255 (1294)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455666666666666 35666666777778889999999999999999999888766543
No 258
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=31.89 E-value=1.6e+02 Score=20.14 Aligned_cols=47 Identities=19% Similarity=0.362 Sum_probs=27.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 49 LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
|-.||-||.--.+.|..|-..+-+-+. +=.+++.++..+.++++...
T Consensus 6 i~~LE~~la~qe~~ie~Ln~~v~~Qq~----~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 6 IEELEIKLAFQEDTIEELNDVVTEQQR----QIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 455677777777777777666655443 33456677777777776654
No 259
>KOG4674|consensus
Probab=31.64 E-value=4.3e+02 Score=29.32 Aligned_cols=76 Identities=28% Similarity=0.413 Sum_probs=46.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhh-hhhhcchHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDN-ADLRCELPKLE---KRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dN-a~Lk~El~klE---KrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
-+||.||++.|+-++ ++.++.+.+ ++|+.+|+.+. ..|.-.-.+.+..=..|.+++..+..+.+-+...+.+.+.
T Consensus 58 ekK~~~l~q~~~~~~-~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ 136 (1822)
T KOG4674|consen 58 EKKILRLEQRLSDLS-RQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKA 136 (1822)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888877 444444433 66666666433 3445555556666666667766666655555555555553
Q ss_pred H
Q psy5720 94 A 94 (153)
Q Consensus 94 ~ 94 (153)
.
T Consensus 137 e 137 (1822)
T KOG4674|consen 137 E 137 (1822)
T ss_pred H
Confidence 3
No 260
>PRK01156 chromosome segregation protein; Provisional
Probab=31.59 E-value=4.9e+02 Score=25.19 Aligned_cols=48 Identities=13% Similarity=0.244 Sum_probs=22.1
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
+++..++.+......|-..=..|+.++..++.++..-.+.|..|+.-|
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel 718 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRI 718 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 333344444444444444444455555555555555555444444433
No 261
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=31.47 E-value=70 Score=27.17 Aligned_cols=18 Identities=17% Similarity=0.501 Sum_probs=9.3
Q ss_pred hhcchHHHHHHHHHhHHH
Q psy5720 45 LRCELPKLEKRLRATMER 62 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ER 62 (153)
++.||.....+|..--.|
T Consensus 106 mr~eV~~Y~~KL~eLE~k 123 (195)
T PF10226_consen 106 MRQEVAQYQQKLKELEDK 123 (195)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455565555555443333
No 262
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=31.32 E-value=3.8e+02 Score=23.83 Aligned_cols=11 Identities=27% Similarity=0.431 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q psy5720 83 RYQYEVDRIKE 93 (153)
Q Consensus 83 ryq~Ev~riKe 93 (153)
.|+++++.++.
T Consensus 116 ~y~~~~~~l~~ 126 (332)
T TIGR01541 116 LYKEQLAAIKA 126 (332)
T ss_pred HHHHHHHHHHH
Confidence 45555555553
No 263
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=31.13 E-value=3e+02 Score=22.64 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=12.4
Q ss_pred hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
..|..|...+...+..+..-.++|.+++...++
T Consensus 70 ~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~ 102 (251)
T PF11932_consen 70 VYNEQLERQVASQEQELASLEQQIEQIEETRQE 102 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 264
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=31.05 E-value=5.3e+02 Score=25.44 Aligned_cols=10 Identities=40% Similarity=0.179 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy5720 66 LETALKEAKE 75 (153)
Q Consensus 66 LE~aLkeakE 75 (153)
++.+.++|++
T Consensus 563 ~~~a~~ea~~ 572 (771)
T TIGR01069 563 KLELEKEAQE 572 (771)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 265
>KOG1937|consensus
Probab=31.02 E-value=1.9e+02 Score=27.90 Aligned_cols=53 Identities=23% Similarity=0.399 Sum_probs=40.4
Q ss_pred HHHhhhhhhhcchHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLRA--TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~a--r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
+.+++|..++.|+-.+|+.+-. --.+.++||. +-.|.+.+.++.+.+++.+|.
T Consensus 466 E~i~~tg~~~revrdlE~qI~~E~~k~~l~slEk--------l~~Dyqairqen~~L~~~iR~ 520 (521)
T KOG1937|consen 466 EMIRETGALKREVRDLESQIYVEEQKQYLKSLEK--------LHQDYQAIRQENDQLFSEIRL 520 (521)
T ss_pred HHHHHcchHHHHHHHHHHHHhHHHHHHHHhhHHH--------HHHHHHHHHHHHHHHHHHHhc
Confidence 5568999999999999999876 4455566654 455777888888888877763
No 266
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=31.00 E-value=2.5e+02 Score=24.75 Aligned_cols=55 Identities=20% Similarity=0.347 Sum_probs=32.8
Q ss_pred hhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccccCC
Q psy5720 42 NADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRA 115 (153)
Q Consensus 42 Na~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~rr~~~arIAKPiRg 115 (153)
|.+++..+ +-+...-.+.++.+|.-. +.+++.+|.+++++|.-+++ +-|-+|+-.
T Consensus 164 ~~~i~~~i---~~~~~~l~~~~~~~~~~a----------k~~~~~~I~rL~~AL~IA~a------agI~kP~~~ 218 (325)
T PRK15471 164 EKDLKDNI---ALRTKTLQDSLETQEVVA----------QEQKDLRIKQIQEALQYANQ------ANITKPQIQ 218 (325)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHH------cCCCCCCCC
Confidence 34444444 334444445555554432 34677899999999988755 456666643
No 267
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=30.81 E-value=1.1e+02 Score=24.49 Aligned_cols=10 Identities=40% Similarity=0.451 Sum_probs=4.7
Q ss_pred HHHHhhHHHH
Q psy5720 22 SFLENNLDQL 31 (153)
Q Consensus 22 aFLE~NLEQL 31 (153)
.-|+..|++|
T Consensus 37 ~~L~~El~~L 46 (160)
T PRK06342 37 KALEDQLAQA 46 (160)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 268
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=30.72 E-value=98 Score=22.62 Aligned_cols=18 Identities=33% Similarity=0.674 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQL 38 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQL 38 (153)
+.||+++++.|+..-+.|
T Consensus 88 ~~~l~~~~~~l~~~~~~l 105 (126)
T TIGR00293 88 IEFLKKRIEELEKAIEKL 105 (126)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555555444444
No 269
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=30.62 E-value=4.3e+02 Score=24.26 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=8.4
Q ss_pred HHHHHHHHHhhHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTK 33 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~ 33 (153)
-+.++.-|...|..|+.
T Consensus 256 a~~~i~~L~~~l~~l~~ 272 (582)
T PF09731_consen 256 AKERIDALQKELAELKE 272 (582)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555554443
No 270
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=30.62 E-value=1e+02 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.316 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHH
Q psy5720 84 YQYEVDRIKEAVRQ 97 (153)
Q Consensus 84 yq~Ev~riKe~l~~ 97 (153)
+++|-+++|+.|.-
T Consensus 96 l~~EN~rLr~LL~~ 109 (283)
T TIGR00219 96 LKQENVRLRELLNS 109 (283)
T ss_pred HHHHHHHHHHHhcC
Confidence 55666666665543
No 271
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=30.59 E-value=2.2e+02 Score=22.76 Aligned_cols=50 Identities=22% Similarity=0.437 Sum_probs=28.3
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
|..-|++| ..|.++...=-.|+.|+..++.+++.....+...+..|..+=
T Consensus 14 L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 14 LSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 233333333356777777777777777776666666665543
No 272
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=30.57 E-value=1.4e+02 Score=28.88 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
.-++.++.-|.+|.+||+-=-.|++- ++..+++-|...-| ++.+.+.+++-.+-..-++-..+++.+.+.+
T Consensus 414 ~lt~~~~~~ee~l~~Lt~~l~~l~~~------~i~~~~~~l~~dk~---~~~~~vnn~ki~l~~~ieki~~~l~~lqe~l 484 (543)
T COG1315 414 ELTEEISLHEERLKKLTKLLVALVKV------KIESKKNILPPDKE---SLLTAVNNTKITLRNSIEKIKAELEGLQEEL 484 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhcCCCCCCcH---HHHHhhhhhhccHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888765555542 44555555555544 6777777777666666667777777777777
Q ss_pred HHH
Q psy5720 96 RQK 98 (153)
Q Consensus 96 ~~~ 98 (153)
.+.
T Consensus 485 e~~ 487 (543)
T COG1315 485 EVV 487 (543)
T ss_pred hhh
Confidence 654
No 273
>KOG3540|consensus
Probab=30.56 E-value=5.3e+02 Score=25.37 Aligned_cols=51 Identities=24% Similarity=0.324 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
=||-||.+=|+--.++.+|-|.--.--..-|. ||+|| .+-++|.++.=.+|
T Consensus 251 F~kAkmrleekhr~rmd~VmkEW~~ae~qaKn--PKAek--qalnqhFQ~~v~sL 301 (615)
T KOG3540|consen 251 FQKAKMRLEEKHRKRMDKVMKEWEEAETQAKN--PKAEK--QALNQHFQKTVSSL 301 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--chhhH--HHHHHHHHHHHHHH
Confidence 48999999999999999999987654445555 99999 67777765543333
No 274
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=30.53 E-value=3.3e+02 Score=22.87 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy5720 84 YQYEVDRIKEAVRQK 98 (153)
Q Consensus 84 yq~Ev~riKe~l~~~ 98 (153)
.+.++...+..+...
T Consensus 183 ~~~~l~~~~~~l~~a 197 (331)
T PRK03598 183 AKASLAQAQAALAQA 197 (331)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445454444443
No 275
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=30.41 E-value=5.4e+02 Score=25.37 Aligned_cols=7 Identities=14% Similarity=0.658 Sum_probs=3.5
Q ss_pred cccCCCC
Q psy5720 111 KPIRAGQ 117 (153)
Q Consensus 111 KPiRgGg 117 (153)
++++.|.
T Consensus 635 ~~~~~Gd 641 (782)
T PRK00409 635 EELKVGD 641 (782)
T ss_pred cCCCCCC
Confidence 3455554
No 276
>PRK04863 mukB cell division protein MukB; Provisional
Probab=30.40 E-value=7.2e+02 Score=26.79 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=22.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 59 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar 59 (153)
++.-.+.||+++.-.-..|..+=..|+.+..++++.+...
T Consensus 301 kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 301 QLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666555555555555666655555544443
No 277
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=30.40 E-value=3.5e+02 Score=23.25 Aligned_cols=44 Identities=14% Similarity=0.268 Sum_probs=31.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHH
Q psy5720 55 RLRATMERVKALETALKEAKEGAMK---------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 55 rL~ar~ERIk~LE~aLkeakE~~~k---------~~~ryq~Ev~riKe~l~~~ 98 (153)
+|...-.-+.++...|..++|.++. +|.-+.+|++.+++.+-.-
T Consensus 72 ~l~~~e~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~aia~Ei~~l~~~l~~~ 124 (317)
T PRK08027 72 KVSLEESVLSQVTTAIQNAQEKIVYAGNGTLSDDDRASLATDLQGLRDQLLNL 124 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666677778887764 8889999999999987554
No 278
>PLN02943 aminoacyl-tRNA ligase
Probab=30.34 E-value=1.7e+02 Score=29.28 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=34.7
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKE----------AKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLke----------akE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
|+..|+.+|+|+|..-.-.|..++.-|.. ..+.-...-..|+.++..|++.+..-
T Consensus 886 D~~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 886 DISAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777888777777777777766642 22222223356778888888877654
No 279
>PRK14160 heat shock protein GrpE; Provisional
Probab=30.23 E-value=2.5e+02 Score=23.71 Aligned_cols=11 Identities=45% Similarity=0.486 Sum_probs=4.4
Q ss_pred hhHHHHHHHHH
Q psy5720 81 RKRYQYEVDRI 91 (153)
Q Consensus 81 ~~ryq~Ev~ri 91 (153)
|+|+..|++.+
T Consensus 95 RKR~~kE~e~~ 105 (211)
T PRK14160 95 RKRTAKEKEGI 105 (211)
T ss_pred HHHHHHHHHHH
Confidence 33444444333
No 280
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=29.90 E-value=3.8e+02 Score=23.40 Aligned_cols=73 Identities=23% Similarity=0.364 Sum_probs=33.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
..+.-++..|+.|..-.+.|..+-..|..|-..+++.|..--+... .|.+-.+...+++..|+.++....+..
T Consensus 43 ~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~----~l~~eE~~~~~~~n~~~~~l~~~~~e~ 115 (314)
T PF04111_consen 43 EDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELE----ELDEEEEEYWREYNELQLELIEFQEER 115 (314)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444444444444444433222111 223333445556666665555555443
No 281
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=29.74 E-value=3.2e+02 Score=22.48 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l~ 96 (153)
+|..++.+|+.+...+.
T Consensus 119 eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 119 EREELQRKLSQLEQKLQ 135 (194)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 45566666666665553
No 282
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=29.52 E-value=2.3e+02 Score=23.92 Aligned_cols=39 Identities=15% Similarity=0.252 Sum_probs=31.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
..+.+..||+-++.-..++-+|..+-.+|+.||..|-=.
T Consensus 38 ~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~ 76 (263)
T PRK10803 38 VEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQ 76 (263)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 357788999999988888888888889999988765443
No 283
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=29.47 E-value=4.4e+02 Score=24.67 Aligned_cols=54 Identities=22% Similarity=0.380 Sum_probs=35.6
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
.++...|...++....-.+.+.+|..--++|++.+ ..|+..+..||-.|...|.
T Consensus 382 ~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l----~~~~~~l~~ikR~lek~nL 435 (560)
T PF06160_consen 382 EEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKL----QKLKQKLREIKRRLEKSNL 435 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCC
Confidence 34455555566666666667777777666666655 4577778888877776655
No 284
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=29.37 E-value=43 Score=24.43 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=10.2
Q ss_pred HHHhhhhhhhcchHHHH
Q psy5720 37 QLVRDNADLRCELPKLE 53 (153)
Q Consensus 37 QLV~dNa~Lk~El~klE 53 (153)
.|..+|+.|+.|+.++|
T Consensus 4 ei~eEn~~Lk~eiqkle 20 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLE 20 (76)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35567777776655444
No 285
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=29.33 E-value=3.4e+02 Score=24.51 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT--------MERVKALETALKEAKEGAM 78 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar--------~ERIk~LE~aLkeakE~~~ 78 (153)
+..-.-.-..||++++.|.+-+..-+.-|+.+-.+...|..- .+.|+.||.-+++++..+.
T Consensus 17 qethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 17 QETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHH
No 286
>KOG0963|consensus
Probab=29.29 E-value=1.7e+02 Score=28.79 Aligned_cols=111 Identities=21% Similarity=0.226 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHhhcCCCCCC
Q psy5720 29 DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV-DRIKEAVRQKNLARRGPAP 107 (153)
Q Consensus 29 EQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev-~riKe~l~~~n~~rr~~~a 107 (153)
+..+...-+|..-|..|..|++.|......-..||-.+..---+....+. -|.++ ...-.-+...+. . +...
T Consensus 372 ~~~~~leslLl~knr~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~-----~~ke~i~klE~dl~~~~~-~-~~~~ 444 (629)
T KOG0963|consen 372 ETAKTLESLLLEKNRKLQNENASLRVANSGLSGRITELSKKGEELEAKAT-----EQKELIAKLEQDLLKVQV-S-PPAE 444 (629)
T ss_pred cccchHHHHHHHHHhhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHH-----HHHHHHHHHHhhHhhccc-C-CCCC
Confidence 33445555666666666666666666555555555444432222221111 11111 111112333332 1 2223
Q ss_pred ccccccCCCCCCC-C-CccCCCCCCCCCCChhhhhheeeec
Q psy5720 108 QIAKPIRAGQPVV-P-PVIRPGGVTSPRWGDEERKRKVIMG 146 (153)
Q Consensus 108 rIAKPiRgGg~~~-~-~~~r~~~~~~~~~~~~~~~~~~~~~ 146 (153)
-+..|.=+|-+-. . ..+-+++++.|+..+-.+--.|||+
T Consensus 445 ~~~~~~~~~~~~~v~e~s~~~~~p~~~~~~~~s~~l~ii~~ 485 (629)
T KOG0963|consen 445 GATARREEGSGQPVPESSIMGGGPSLPNGGVLSRILSVISS 485 (629)
T ss_pred cchhhhcccCCcCCCcccccCCCCCccccccccccchhhhc
Confidence 3444433332211 1 3455677777777766666666664
No 287
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=29.24 E-value=14 Score=18.37 Aligned_cols=10 Identities=50% Similarity=0.703 Sum_probs=7.2
Q ss_pred HHHHHHhhHH
Q psy5720 20 KISFLENNLD 29 (153)
Q Consensus 20 KiaFLE~NLE 29 (153)
||.+.|+||.
T Consensus 1 KID~VEknL~ 10 (11)
T PF02524_consen 1 KIDSVEKNLN 10 (11)
T ss_pred CcchHhhhcc
Confidence 5677888874
No 288
>KOG2391|consensus
Probab=29.15 E-value=2.8e+02 Score=25.70 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
.++-.|+....||-.++-..|+.-.|.+..+.+++..++++++-
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEq 260 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQ 260 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 45556666667777777777766666666655554444444443
No 289
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=28.54 E-value=3.2e+02 Score=22.08 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=19.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
|++.+-|..|.++|..==..-..+++.+..-...|+.++...+.
T Consensus 33 ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~ 76 (155)
T PRK06569 33 PKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNT 76 (155)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555554432222233344444444444444444443
No 290
>PRK12805 flagellin; Provisional
Probab=28.43 E-value=3.7e+02 Score=22.77 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=37.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHhh
Q psy5720 52 LEKRLRATMERVKALETALKEAKEGAMK---------DRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 52 lEKrL~ar~ERIk~LE~aLkeakE~~~k---------~~~ryq~Ev~riKe~l~~~n~ 100 (153)
+...|....-.+..+...|..++|-++. ||..++.||+.+++.+..--.
T Consensus 69 ~~s~l~~~e~~L~~i~~~l~r~rel~v~a~ngt~s~~dr~ai~~Ei~~l~~~i~~~an 126 (287)
T PRK12805 69 GIDLLQTADSALSSMSSILQRMRQLAVQSSNGSFSDEDRKQYTAEFGSLIKELDHVAD 126 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777788888888887766 899999999999998755533
No 291
>PF11219 DUF3014: Protein of unknown function (DUF3014); InterPro: IPR021382 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=28.22 E-value=27 Score=28.35 Aligned_cols=18 Identities=33% Similarity=0.665 Sum_probs=15.5
Q ss_pred HHHhhHHHHHHHHHHHHh
Q psy5720 23 FLENNLDQLTKVHKQLVR 40 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~ 40 (153)
|---+||.|..+||||+|
T Consensus 123 yaDp~LE~Ls~~QK~LlR 140 (158)
T PF11219_consen 123 YADPELEALSAAQKQLLR 140 (158)
T ss_pred EcChhhhcCCHHHHHHHH
Confidence 445689999999999997
No 292
>KOG1510|consensus
Probab=28.19 E-value=1.5e+02 Score=24.10 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhh
Q psy5720 10 DDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLR 46 (153)
Q Consensus 10 ~~~gs~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk 46 (153)
..|+-.+|=.||.-|++.++.-..--.-+|..+.+|.
T Consensus 82 ~~~~~e~Ql~~i~kLq~en~e~~~el~~~v~~~e~Ll 118 (139)
T KOG1510|consen 82 EEGSAEAQLEKIKKLQEENEEVALELEELVSKGEKLL 118 (139)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888877765544445555554443
No 293
>PRK12705 hypothetical protein; Provisional
Probab=28.07 E-value=5.3e+02 Score=24.51 Aligned_cols=71 Identities=18% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHH-hhhHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA----LKEAKEGAMK-DRKRYQYEVDRI 91 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~a----LkeakE~~~k-~~~ryq~Ev~ri 91 (153)
.|+-..|++..+.|.+-+.+|-.....|......++++ ..++...||.. -.+|++.++. =...+..|...+
T Consensus 87 ~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~---~~~~~~~Le~ia~lt~~eak~~l~~~~~~~~~~e~~~~ 162 (508)
T PRK12705 87 VQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL---EKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQR 162 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
No 294
>PRK02224 chromosome segregation protein; Provisional
Probab=27.82 E-value=5.5e+02 Score=24.61 Aligned_cols=10 Identities=30% Similarity=0.451 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy5720 61 ERVKALETAL 70 (153)
Q Consensus 61 ERIk~LE~aL 70 (153)
.++..|+..|
T Consensus 321 ~k~~el~~~l 330 (880)
T PRK02224 321 DRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 295
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=27.65 E-value=1.6e+02 Score=19.07 Aligned_cols=27 Identities=26% Similarity=0.443 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 70 LKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 70 LkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
|+.--+++.+++.++..||...++.+.
T Consensus 17 Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 17 LKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455566667777777777766553
No 296
>KOG4005|consensus
Probab=27.64 E-value=2e+02 Score=25.71 Aligned_cols=43 Identities=14% Similarity=0.271 Sum_probs=33.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 54 KRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 54 KrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+-|.-.|++.+.=-..|++-.+++|.+++.+-++++-.++.|-
T Consensus 100 ~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~ 142 (292)
T KOG4005|consen 100 KDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELA 142 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4566667766666677888889999999999999998887663
No 297
>PRK00846 hypothetical protein; Provisional
Probab=27.56 E-value=2.4e+02 Score=20.42 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=6.8
Q ss_pred HHHHHHhhHHHHHH
Q psy5720 20 KISFLENNLDQLTK 33 (153)
Q Consensus 20 KiaFLE~NLEQLT~ 33 (153)
+++|.|.-+|+|..
T Consensus 21 rlAfQe~tIe~LN~ 34 (77)
T PRK00846 21 RLSFQEQALTELSE 34 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555443
No 298
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=27.48 E-value=1.3e+02 Score=27.52 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=19.7
Q ss_pred hhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 42 NADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 42 Na~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
+..++.++..+++.+..-.+||.-|+..|.+-+
T Consensus 195 ~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~ 227 (475)
T PF10359_consen 195 DPELKSDIEELERHISSLKERIEFLENMLEDLE 227 (475)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556666666666666666666666655444
No 299
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=27.46 E-value=36 Score=27.20 Aligned_cols=57 Identities=25% Similarity=0.338 Sum_probs=11.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
..|.-|+...++|..--+-|..+|..|+.+++..-.+|-..-..+-.||...++=+.
T Consensus 15 ~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq~se~~~~~Lpee~~~Lqf 71 (181)
T PF09311_consen 15 QHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQESEQEVAQLPEEVKHLQF 71 (181)
T ss_dssp HHHHHHHHCCHHHHT------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCcchHHHHHH
Confidence 446777777778877778899999999999999999996666666667666555443
No 300
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=27.27 E-value=4.4e+02 Score=23.32 Aligned_cols=75 Identities=17% Similarity=0.345 Sum_probs=38.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n 99 (153)
+...|...|+++.-. ++....-....-|-...+++|.+..+....++.-|+++...+ +-+...|..++++|....
T Consensus 167 kV~WLR~~L~Ei~Ea-~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~----~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 167 KVDWLRSKLEEILEA-KEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEV----KEIKERITEMKGRLGELE 241 (269)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456677777776644 333333344444555556666666555555555454443322 233444555666554443
No 301
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=27.24 E-value=1.5e+02 Score=29.55 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=32.7
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHH-------HHHHHhh---hHHHHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAK-------EGAMKDR---KRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeak-------E~~~k~~---~ryq~Ev~riKe~l~~ 97 (153)
+..|+.+|+|+|..-...|..++..|.... +-..+++ ..|+.+++.|++.+..
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~ 989 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEE 989 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777788777777777777777664322 2222233 3467777777776643
No 302
>PF14182 YgaB: YgaB-like protein
Probab=27.10 E-value=2.6e+02 Score=20.68 Aligned_cols=39 Identities=28% Similarity=0.463 Sum_probs=26.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 56 LRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 56 L~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
|.+-.||.+..|.-|.+-.+.+.. ...++||.++|..|.
T Consensus 19 LQsElERCqeIE~eL~~l~~ea~l--~~i~~EI~~mkk~Lk 57 (79)
T PF14182_consen 19 LQSELERCQEIEKELKELEREAEL--HSIQEEISQMKKELK 57 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHH
Confidence 556778888888888877765544 345666666666553
No 303
>TIGR01063 gyrA DNA gyrase, A subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV.
Probab=27.07 E-value=1.5e+02 Score=29.29 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=54.2
Q ss_pred HHHHHHHhhHHHHHHHHH-HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Q psy5720 19 QKISFLENNLDQLTKVHK-QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhK-QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~r 83 (153)
|=-+.|+-.|-+||+-.. .|..+-.+|+.|+..++.-|....+..+-+-.-|++-+++.-..|+.
T Consensus 412 qa~~il~m~L~~Lt~~e~~kl~~e~~~l~~ei~~l~~iL~~~~~l~~vi~~EL~eikkkfg~~RRT 477 (800)
T TIGR01063 412 QAQAILDMRLQRLTGLEREKLQEEYKELLELIADLEDILASEERVLEIIREELEEIKEQFGDPRRT 477 (800)
T ss_pred HHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 445678888999998765 44566799999999999999999999999999999999888777665
No 304
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=26.92 E-value=3.6e+02 Score=23.17 Aligned_cols=15 Identities=13% Similarity=0.357 Sum_probs=8.4
Q ss_pred hHHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAVR 96 (153)
Q Consensus 82 ~ryq~Ev~riKe~l~ 96 (153)
.....++..+..+|.
T Consensus 51 ~~l~~~~~~L~~aL~ 65 (304)
T PF02646_consen 51 QQLSQEASNLTSALK 65 (304)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455555555555555
No 305
>PRK14161 heat shock protein GrpE; Provisional
Probab=26.74 E-value=3e+02 Score=22.42 Aligned_cols=6 Identities=17% Similarity=0.213 Sum_probs=2.5
Q ss_pred CCCCCC
Q psy5720 127 GGVTSP 132 (153)
Q Consensus 127 ~~~~~~ 132 (153)
|..+-|
T Consensus 128 G~~FDP 133 (178)
T PRK14161 128 GSMFDY 133 (178)
T ss_pred CCCCCh
Confidence 334444
No 306
>KOG0612|consensus
Probab=26.71 E-value=4.3e+02 Score=28.37 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=14.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 26 NNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 26 ~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
+.++++.+..+||...+.|++-|+..+-+
T Consensus 536 ~~~~kv~~~rk~le~~~~d~~~e~~~~~k 564 (1317)
T KOG0612|consen 536 DSLEKVNSLRKQLEEAELDMRAESEDAGK 564 (1317)
T ss_pred HHHhhHHHHHHHHHHhhhhhhhhHHHHhh
Confidence 33444445555555555555555544433
No 307
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.69 E-value=1.2e+02 Score=20.20 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=16.3
Q ss_pred chHHHHHHHHHhHHHHHHHHHHH
Q psy5720 48 ELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 48 El~klEKrL~ar~ERIk~LE~aL 70 (153)
.|..|..+|.+-..|++.||.-+
T Consensus 24 ~lq~Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 24 ALQSLTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34556667778888888888754
No 308
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=26.64 E-value=4.4e+02 Score=23.08 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 61 ERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 61 ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+++.+..-|.+.++.+-..=..+++||+.+.-.+...
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~ 100 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKT 100 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45777788888888888888889999998887766433
No 309
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=26.60 E-value=3.4e+02 Score=21.80 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=24.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 64 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk 64 (153)
.+.++.-++..++.|...-.++-....+.|..+..+...|..+...+.
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444445555555555555555554444443
No 310
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.43 E-value=3.1e+02 Score=21.34 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=9.5
Q ss_pred HHhhHHHHHHHHHHHHhhhhhh
Q psy5720 24 LENNLDQLTKVHKQLVRDNADL 45 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~L 45 (153)
++++|+.-...+.+.-...+..
T Consensus 52 I~~~l~~Ae~~~~eA~~~~~e~ 73 (173)
T PRK13460 52 VQNDINKASELRLEAEALLKDY 73 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444554444444443333333
No 311
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=26.40 E-value=2.2e+02 Score=20.00 Aligned_cols=51 Identities=25% Similarity=0.360 Sum_probs=30.3
Q ss_pred HHHhhHHHHHHHHHH-------HHhhhhhhhcc--hHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQ-------LVRDNADLRCE--LPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 23 FLE~NLEQLT~VhKQ-------LV~dNa~Lk~E--l~klEKrL~ar~ERIk~LE~aLkea 73 (153)
-|+..|+.|..|..- -.+...||+-- ..-+..++..-.-||..||..|..|
T Consensus 13 ~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~a 72 (74)
T PF03449_consen 13 KLQAELEHLKNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLARA 72 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 366677777766652 23445555532 2455556666666777777777654
No 312
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=26.24 E-value=1.3e+02 Score=23.67 Aligned_cols=7 Identities=43% Similarity=0.657 Sum_probs=2.6
Q ss_pred HhhHHHH
Q psy5720 25 ENNLDQL 31 (153)
Q Consensus 25 E~NLEQL 31 (153)
+..|++|
T Consensus 16 ~~EL~~L 22 (157)
T PRK01885 16 KQELDYL 22 (157)
T ss_pred HHHHHHH
Confidence 3333333
No 313
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=26.23 E-value=1.2e+02 Score=22.47 Aligned_cols=49 Identities=31% Similarity=0.458 Sum_probs=33.5
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+.++..++.++.....|+..||+.++.-=- -.|=++++-+|..++..+.
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt--~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPT--RDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHhHHH
Confidence 788899999999999999999998764300 1234455555655555444
No 314
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=26.14 E-value=3e+02 Score=21.08 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=36.1
Q ss_pred HHHHhhhhhhhcchHHHHHH--HHHhHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKR--LRATMERVKALETALKEAKEGA----MKDRKRYQYEVDRIKE 93 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKr--L~ar~ERIk~LE~aLkeakE~~----~k~~~ryq~Ev~riKe 93 (153)
-.|+..+-.+.+.+..++.- ...-..++..|...|..+...+ ...+..|+..+..+..
T Consensus 70 LALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ 133 (139)
T PF13935_consen 70 LALLDELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 35666666666666666655 5555566777777777777666 4455566666665544
No 315
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.98 E-value=4.6e+02 Score=23.10 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
.|..++.=++.++-.+.+==..|..+=.++-..+..++++..-..+=|+.|+.-+++.++++
T Consensus 35 ~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 35 NQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333332333333333333333344444334444444444444444333
No 316
>PRK14127 cell division protein GpsB; Provisional
Probab=25.97 E-value=2.4e+02 Score=21.61 Aligned_cols=32 Identities=22% Similarity=0.447 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRA 58 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a 58 (153)
.++.|..-...|-.+|..|+.+|..++.++..
T Consensus 38 dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 38 DYEAFQKEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34444444455556666666666666666653
No 317
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=25.95 E-value=2.1e+02 Score=19.17 Aligned_cols=51 Identities=14% Similarity=0.351 Sum_probs=30.9
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
+=+.-+..+|..|..-.+=|..+|--++.+ -...|..|...|..+|..+..
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~---p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLKQMELEVRSL---PPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTS----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666655444 235677777777777766643
No 318
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=25.93 E-value=6.1e+02 Score=24.50 Aligned_cols=61 Identities=21% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT----------MERVKALETALKEAKEGAMK 79 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar----------~ERIk~LE~aLkeakE~~~k 79 (153)
..|.-++..++.|+.-.+|+..+....+.+...+|+-+... -+-|..|+..+..+.+++..
T Consensus 342 ~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~ 412 (594)
T PF05667_consen 342 SQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEASEQRLVE 412 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777766666666665555544432 34556666666665555543
No 319
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=25.57 E-value=3.4e+02 Score=21.39 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=6.4
Q ss_pred HHHhhHHHHHHHHHH
Q psy5720 23 FLENNLDQLTKVHKQ 37 (153)
Q Consensus 23 FLE~NLEQLT~VhKQ 37 (153)
.+..+|+.-.....+
T Consensus 59 ~I~~~l~~Ae~~~~e 73 (184)
T CHL00019 59 TILNTIRNSEERREE 73 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 320
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=25.52 E-value=4.8e+02 Score=23.16 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=23.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 57 RATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 57 ~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
.-..+|+..|+..|..+-...+ ..++++++.+..+|...+..
T Consensus 353 ~r~~qrL~~L~~rL~~a~~~~L---~~~~~rL~~l~~rL~~lsP~ 394 (438)
T PRK00286 353 ERAQQRLEQLEQRLRRAMRRQL---KRKRQRLEALAQQLEALSPL 394 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCCh
Confidence 3344556666666655443333 44556677777777766555
No 321
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=25.37 E-value=2.9e+02 Score=20.60 Aligned_cols=14 Identities=29% Similarity=0.537 Sum_probs=7.2
Q ss_pred HHHHHhhHHHHHHH
Q psy5720 21 ISFLENNLDQLTKV 34 (153)
Q Consensus 21 iaFLE~NLEQLT~V 34 (153)
+.||+.+++.|+..
T Consensus 96 ~~~l~~~~~~l~~~ 109 (140)
T PRK03947 96 IEILDKRKEELEKA 109 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 322
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=25.30 E-value=2.9e+02 Score=26.21 Aligned_cols=49 Identities=29% Similarity=0.329 Sum_probs=37.1
Q ss_pred hhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 42 NADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 42 Na~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
|.+++..+..+|..|..|.-- |+|-|.-++..=+++|.++.+|.+.+-.
T Consensus 194 ~qdW~~AI~~Ce~LL~Etsgt-------LRELqdtL~aagd~lqa~Ll~IQe~~~~ 242 (440)
T PF03882_consen 194 NQDWRAAIQSCEQLLDETSGT-------LRELQDTLEAAGDKLQAQLLRIQEAVMG 242 (440)
T ss_dssp HHHGGGGHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHHHHHhh-------HHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 567777888899999888764 4555566677778899999999887643
No 323
>smart00340 HALZ homeobox associated leucin zipper.
Probab=25.30 E-value=1.4e+02 Score=20.01 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 69 ALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 69 aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
.||.-=|.+..+|+|+|.||+.+|
T Consensus 9 ~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 9 LLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888899999999998875
No 324
>PRK14143 heat shock protein GrpE; Provisional
Probab=25.25 E-value=4.3e+02 Score=22.58 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=8.8
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQL 38 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQL 38 (153)
.+.-|+..|+.|..-.+.|
T Consensus 68 ~~~~l~~el~~l~~e~~el 86 (238)
T PRK14143 68 RLAQLEQELESLKQELEEL 86 (238)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555444433333
No 325
>KOG4593|consensus
Probab=25.13 E-value=5e+02 Score=26.13 Aligned_cols=69 Identities=23% Similarity=0.221 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH---hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLV---RDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV---~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
.|=|...||+..+.|++.+=+-|- +-+..|+-|+..++.+|..-.. |+. -...+--.+-.|..++.++.
T Consensus 248 dqlqel~~l~~a~~q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~----l~~----~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 248 DQLQELEELERALSQLREELATLRENRETVGLLQEELEGLQSKLGRLEK----LQS----TLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH----HHH----HHhhHHHHHHHHHHHHHHHH
Confidence 466778899999999999888554 4447888999888887764333 222 23333345555555555554
No 326
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=25.13 E-value=6e+02 Score=24.15 Aligned_cols=37 Identities=38% Similarity=0.441 Sum_probs=24.1
Q ss_pred HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG 76 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~ 76 (153)
+..++|++|+..-..+|+-|+|.-| +=|.+.|||+.+
T Consensus 296 ~VarENs~LqrQKle~e~~l~a~qe---akek~~KEAqar 332 (442)
T PF06637_consen 296 RVARENSDLQRQKLEAEQGLQASQE---AKEKAGKEAQAR 332 (442)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 4557888888888888888777655 334444454443
No 327
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.99 E-value=3e+02 Score=20.61 Aligned_cols=28 Identities=18% Similarity=0.270 Sum_probs=12.5
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcch
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCEL 49 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El 49 (153)
..+.++|+.-.....+......+.+..+
T Consensus 38 ~~I~~~l~~a~~~~~~a~~~~~e~~~~l 65 (156)
T PRK05759 38 KKIADGLAAAERAKKELELAQAKYEAQL 65 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544444444333333333
No 328
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=24.88 E-value=7.2e+02 Score=24.98 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhhc
Q psy5720 80 DRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
.+-.+|.+|++++-+|..++..
T Consensus 337 ~~~~Lqsdve~Lr~rle~k~~~ 358 (775)
T PF10174_consen 337 EAEMLQSDVEALRFRLEEKNSQ 358 (775)
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 5556777777777777666543
No 329
>KOG0971|consensus
Probab=24.83 E-value=5.8e+02 Score=27.06 Aligned_cols=66 Identities=21% Similarity=0.314 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLR----ATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~----ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
+-+|.+--|--..|-+.++--+.-+||+|. .-.++|+.++..+.+.+..+-+.-+-|.+-+|.+-.
T Consensus 964 ikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~ 1033 (1243)
T KOG0971|consen 964 IKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQA 1033 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444334334554555666667899999 777899999998888887777766667666665544
No 330
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=24.82 E-value=90 Score=23.69 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=5.8
Q ss_pred HHHHHHhhHHHHHH
Q psy5720 20 KISFLENNLDQLTK 33 (153)
Q Consensus 20 KiaFLE~NLEQLT~ 33 (153)
++.-|+..|+.|+.
T Consensus 12 ~~~~~~~~l~~l~~ 25 (165)
T PF01025_consen 12 EIEELEEELEELEK 25 (165)
T ss_dssp HHCCCCCCHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 33334444444443
No 331
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=24.75 E-value=3.9e+02 Score=21.83 Aligned_cols=20 Identities=15% Similarity=0.315 Sum_probs=10.8
Q ss_pred HHHHhhHHHHHHHHHHHHhh
Q psy5720 22 SFLENNLDQLTKVHKQLVRD 41 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~d 41 (153)
..++++|+.......+.-..
T Consensus 82 ~~I~~~L~~Ae~~~~eA~~~ 101 (205)
T PRK06231 82 ELIEAEINQANELKQQAQQL 101 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666555544433
No 332
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=24.75 E-value=4.6e+02 Score=22.65 Aligned_cols=78 Identities=26% Similarity=0.321 Sum_probs=39.0
Q ss_pred hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHhhc---C-CCCC-C
Q psy5720 40 RDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK-------DRKRYQYEVDRIKEAVRQKNLA---R-RGPA-P 107 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k-------~~~ryq~Ev~riKe~l~~~n~~---r-r~~~-a 107 (153)
.+=++|-.++.++++.+..-.+++.++|.-+.+++..+.- +...+.++.+.+++.+.+.-.. + +.++ .
T Consensus 110 ~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg 189 (239)
T COG1579 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKG 189 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCC
Confidence 3334455555666666666666666666666655544322 3444444555555444222111 0 1122 4
Q ss_pred ccccccCCCC
Q psy5720 108 QIAKPIRAGQ 117 (153)
Q Consensus 108 rIAKPiRgGg 117 (153)
.-+=||+|+-
T Consensus 190 ~gvvpl~g~~ 199 (239)
T COG1579 190 VGVVPLEGRV 199 (239)
T ss_pred ceEEeecCCc
Confidence 5566787653
No 333
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=24.44 E-value=5e+02 Score=22.98 Aligned_cols=38 Identities=29% Similarity=0.407 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHH
Q psy5720 30 QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALE 67 (153)
Q Consensus 30 QLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE 67 (153)
+|....++.-.....|..++..++.+|.....++..|+
T Consensus 83 ~l~~~~~~~~~~~~~l~~~l~~~~~~l~~l~~~~~~l~ 120 (372)
T PF04375_consen 83 QLRQLQKQQQEQLQQLQQELAQLQQQLAELQQQLAALS 120 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555566777777777777777777777664
No 334
>KOG0249|consensus
Probab=24.39 E-value=1.9e+02 Score=29.52 Aligned_cols=31 Identities=29% Similarity=0.500 Sum_probs=26.6
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
+-++|+++.+-.++|..++.+|+.|+..|+.
T Consensus 228 ~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 228 VKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4467888888999999999999999988874
No 335
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=24.38 E-value=4.4e+02 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCC
Q psy5720 82 KRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ 117 (153)
Q Consensus 82 ~ryq~Ev~riKe~l~~~n~~rr~~~arIAKPiRgGg 117 (153)
..++.+|+++++++.-+++ |-|-||+-..+
T Consensus 231 ~~~~~~i~rl~~AL~IA~a------agI~kp~~~~~ 260 (377)
T PRK10381 231 NQLDANIQRLNYSLSIANA------AGIKKPVYSNG 260 (377)
T ss_pred HHHHHHHHHHHHHHHHHHH------cCCCCCCCCcc
Confidence 3467899999999987754 56777876533
No 336
>PTZ00464 SNF-7-like protein; Provisional
Probab=24.36 E-value=3.1e+02 Score=22.90 Aligned_cols=15 Identities=20% Similarity=0.501 Sum_probs=7.6
Q ss_pred HHHhhhHHHHHHHHH
Q psy5720 77 AMKDRKRYQYEVDRI 91 (153)
Q Consensus 77 ~~k~~~ryq~Ev~ri 91 (153)
+++.++.|+.+++.+
T Consensus 66 ~LK~KK~~E~ql~~l 80 (211)
T PTZ00464 66 LLQQKRMYQNQQDMM 80 (211)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555555443
No 337
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=24.27 E-value=2.4e+02 Score=19.24 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=19.3
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETALKEAKEGAM 78 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aLkeakE~~~ 78 (153)
...+..+|++..+....|+++..-|.+-.+..-
T Consensus 19 ~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~k 51 (71)
T PF10779_consen 19 EERIDKLEKRDAANEKDIKNLNKQLEKIKSNTK 51 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666655554433
No 338
>KOG0977|consensus
Probab=24.19 E-value=5.3e+02 Score=25.01 Aligned_cols=65 Identities=22% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH-----------------HHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK-----------------EGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak-----------------E~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
.++|..++.+||.-+.++++.+...-|.+..++..|.+.+ ..+-+++.++..+|.++|..+.+
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 3456677777777777776666655555554444433222 22334566666666666655544
Q ss_pred Hh
Q psy5720 98 KN 99 (153)
Q Consensus 98 ~n 99 (153)
.-
T Consensus 195 Et 196 (546)
T KOG0977|consen 195 ET 196 (546)
T ss_pred HH
Confidence 43
No 339
>PRK14147 heat shock protein GrpE; Provisional
Probab=23.82 E-value=3.8e+02 Score=21.63 Aligned_cols=16 Identities=6% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHHHHHHHHhhHHHHH
Q psy5720 17 QRQKISFLENNLDQLT 32 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT 32 (153)
...++.-|+..+++|+
T Consensus 23 l~~~l~~l~~e~~elk 38 (172)
T PRK14147 23 LKAEVESLRSEIALVK 38 (172)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666664
No 340
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.74 E-value=8.7e+02 Score=25.53 Aligned_cols=62 Identities=18% Similarity=0.120 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhh-hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLDQLTKVHKQLVRDN-ADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 16 aQkQKiaFLE~NLEQLT~VhKQLV~dN-a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
.+.+++..|+..++.|+.---+|-... .....++..++..|....+.+...+..+..++..+
T Consensus 301 ~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~~~~a~~~~ 363 (1353)
T TIGR02680 301 ELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQAIREAESRL 363 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667766666666655553222 22335555555555544444444444444444333
No 341
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=23.47 E-value=6.2e+02 Score=23.73 Aligned_cols=81 Identities=20% Similarity=0.287 Sum_probs=53.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHh--------hh-------hhhhcchHH----------HHHHHHHhHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVR--------DN-------ADLRCELPK----------LEKRLRATMERVKALETALKE 72 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~--------dN-------a~Lk~El~k----------lEKrL~ar~ERIk~LE~aLke 72 (153)
.+-+.-|.++..+|.++|.||-- |+ -.|+.++.. +.-+|....--+.++...|..
T Consensus 10 ~~~~~~l~~~q~~l~~~q~QlSSGkri~~psDDP~~a~~~~~l~~~~~~l~qy~~Ni~~a~~~L~~~esaL~~i~~~lqr 89 (523)
T PRK12717 10 ESSAANYQRNYSNLVKTQEQASSGIRIQTAADDPVGAARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQR 89 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777776652 11 124444433 444555666666777778888
Q ss_pred HHHHHHH---------hhhHHHHHHHHHHHHHHHH
Q psy5720 73 AKEGAMK---------DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 73 akE~~~k---------~~~ryq~Ev~riKe~l~~~ 98 (153)
++|-++. +|+-+..||+.+++.|-.-
T Consensus 90 ~rel~vqa~ngt~s~~dr~aia~El~~l~~~l~~~ 124 (523)
T PRK12717 90 ARELAVSAGNGGLTDADRKAIASELKQIEAQLLGL 124 (523)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8887764 8889999999999987544
No 342
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=23.41 E-value=4e+02 Score=21.45 Aligned_cols=10 Identities=0% Similarity=-0.041 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q psy5720 86 YEVDRIKEAV 95 (153)
Q Consensus 86 ~Ev~riKe~l 95 (153)
.+++.++..+
T Consensus 123 ~~l~~~~~~~ 132 (322)
T TIGR01730 123 ASLASAQLNL 132 (322)
T ss_pred HHHHHHHHhh
Confidence 3444444433
No 343
>KOG1962|consensus
Probab=23.30 E-value=2.3e+02 Score=24.21 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=19.5
Q ss_pred HHHHhhhhhhhcchHH---HHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPK---LEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 36 KQLV~dNa~Lk~El~k---lEKrL~ar~ERIk~LE~aLkeak 74 (153)
++...+|..|+.-+.. +|-.....++....||+.|+.-+
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~ 171 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQ 171 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHH
Confidence 3444455555555533 33444555555555555554433
No 344
>PF06721 DUF1204: Protein of unknown function (DUF1204); InterPro: IPR009596 This family represents the C terminus of a number of Arabidopsis thaliana hypothetical proteins of unknown function. Family members contain a conserved DFD motif.
Probab=23.21 E-value=5e+02 Score=22.54 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=14.9
Q ss_pred HHHhhhHHHHHHHHHHHHHH
Q psy5720 77 AMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 77 ~~k~~~ryq~Ev~riKe~l~ 96 (153)
+.+.-.-||.+|+|||--+.
T Consensus 82 L~kv~~l~QARidRvK~HiD 101 (228)
T PF06721_consen 82 LEKVASLYQARIDRVKAHID 101 (228)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33455679999999998764
No 345
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=23.02 E-value=3.6e+02 Score=20.82 Aligned_cols=57 Identities=26% Similarity=0.344 Sum_probs=31.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcch--HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCEL--PKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El--~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
..+|.=|+..|.+|..--+.|-.+=+.|.+.+ ..+...+..--+-|..|+.-|..-+
T Consensus 78 d~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 78 DAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44477777777777777777766666666655 2333333333333444444444433
No 346
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.98 E-value=3.7e+02 Score=21.00 Aligned_cols=53 Identities=19% Similarity=0.416 Sum_probs=26.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
|+|.-|..+||+...+.++.-++=+.++.++....--+..=...|..||.-|.
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555444455555555555555555555555554443
No 347
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.90 E-value=5.8e+02 Score=23.22 Aligned_cols=37 Identities=3% Similarity=-0.014 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 62 RVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 62 RIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+.++-..+.+....+.......+.++..+++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555556666666666655443
No 348
>KOG4098|consensus
Probab=22.80 E-value=1.1e+02 Score=24.93 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=28.7
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
+--|++|-|.|+.|-++|-++--...+|+.+.++.
T Consensus 81 lP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~ 115 (140)
T KOG4098|consen 81 LPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD 115 (140)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44689999999999999988888888888776654
No 349
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=22.78 E-value=1.5e+02 Score=19.02 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.1
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
|+.|+..|.-.+..--++-..||.
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~ 25 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQ 25 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHH
Confidence 678888888888888888888887
No 350
>KOG1029|consensus
Probab=22.76 E-value=6e+02 Score=26.57 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=39.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcch-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCEL-------PKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El-------~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
++-|-.-|+-.|+-|..-++||-..=-|.||.+ ..+.+.-....--|..|-+-|+|.|+.+.+
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~ 504 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQK 504 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555667777788888888876666666654 444444444444566677777777766544
No 351
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=22.64 E-value=3.3e+02 Score=20.99 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=4.8
Q ss_pred HHhhHHHHHH
Q psy5720 24 LENNLDQLTK 33 (153)
Q Consensus 24 LE~NLEQLT~ 33 (153)
|+..|++|..
T Consensus 10 L~~el~~L~~ 19 (151)
T TIGR01462 10 LKEELEYLKT 19 (151)
T ss_pred HHHHHHHHHh
Confidence 4444555543
No 352
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=22.63 E-value=2.1e+02 Score=23.12 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=24.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-hHHH
Q psy5720 51 KLEKRLRATMERVKALETALKEAKEGAMKDR-KRYQ 85 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLkeakE~~~k~~-~ryq 85 (153)
...+.....-.+|..||..|..++.+|..=| ..|+
T Consensus 115 ~~k~~eMe~Qv~iL~lE~eLe~ar~kL~~lRk~~Y~ 150 (152)
T PF01608_consen 115 QAKRQEMEAQVRILKLEKELEKARKKLAELRKAHYH 150 (152)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4455666677799999999999999887733 3454
No 353
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=22.62 E-value=5.5e+02 Score=22.80 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 82 ~ryq~Ev~riKe~l~~ 97 (153)
.++++.++.+..+|..
T Consensus 353 ~r~~qrL~~L~~rL~~ 368 (438)
T PRK00286 353 ERAQQRLEQLEQRLRR 368 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566777777666643
No 354
>PRK12704 phosphodiesterase; Provisional
Probab=22.54 E-value=6.5e+02 Score=23.65 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=6.1
Q ss_pred HHhhHHHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLV 39 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV 39 (153)
|++..+.|.+-.+.|-
T Consensus 98 Le~r~e~Lekke~eL~ 113 (520)
T PRK12704 98 LDRKLELLEKREEELE 113 (520)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 355
>PRK14139 heat shock protein GrpE; Provisional
Probab=22.53 E-value=4.4e+02 Score=21.72 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.2
Q ss_pred HHhhHH
Q psy5720 24 LENNLD 29 (153)
Q Consensus 24 LE~NLE 29 (153)
|+..++
T Consensus 44 le~e~~ 49 (185)
T PRK14139 44 AEAKAA 49 (185)
T ss_pred HHHHHH
Confidence 333333
No 356
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=22.53 E-value=2.9e+02 Score=21.56 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=11.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l~~~ 98 (153)
++.+++..+.+...++...
T Consensus 115 ~~~~a~~~L~rA~~Rl~~~ 133 (145)
T PRK13452 115 DIEAANKRLKEADARLKAL 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455667777776666654
No 357
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=22.50 E-value=3.3e+02 Score=22.65 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=15.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhh
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNA 43 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa 43 (153)
++..+||..+++.+..=|+++.+|.
T Consensus 41 krq~~Le~kIe~e~~~Ak~~~~~~k 65 (191)
T PTZ00446 41 KKQVQVEKKIKQLEIEAKQKVEQNQ 65 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4556666666666665566665553
No 358
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=22.49 E-value=3.6e+02 Score=20.68 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=5.5
Q ss_pred HhhHHHHHHHHHHH
Q psy5720 25 ENNLDQLTKVHKQL 38 (153)
Q Consensus 25 E~NLEQLT~VhKQL 38 (153)
..+|+.-...+.+.
T Consensus 59 ~~~l~~Ae~~~~ea 72 (156)
T CHL00118 59 RKNLTKASEILAKA 72 (156)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444443333333
No 359
>KOG3156|consensus
Probab=22.46 E-value=2.5e+02 Score=24.35 Aligned_cols=53 Identities=23% Similarity=0.423 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHH-HhhHHHHHH----HHH----HHHhhhhhhhcchHHHHHHHHHhHHHHH
Q psy5720 12 GGSLAQRQKISFL-ENNLDQLTK----VHK----QLVRDNADLRCELPKLEKRLRATMERVK 64 (153)
Q Consensus 12 ~gs~aQkQKiaFL-E~NLEQLT~----VhK----QLV~dNa~Lk~El~klEKrL~ar~ERIk 64 (153)
..+.+|+++++|- ..+|+++-+ ..+ -|-.+|.+|+.||.++...|+.--.++-
T Consensus 86 ~vtkaqq~~v~~QQ~~~f~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ei~~~~ 147 (220)
T KOG3156|consen 86 LVTKAQQEKVSYQQKVDFAKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRHEISKTT 147 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4678888888886 456665432 121 2346899999999999999987666553
No 360
>KOG3915|consensus
Probab=22.41 E-value=3.3e+02 Score=26.71 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=11.5
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhc
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRC 47 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~ 47 (153)
.-|-+|+.-|-+| +-||+.+..
T Consensus 502 eTll~niq~llkv----a~dnar~qe 523 (641)
T KOG3915|consen 502 ETLLTNIQGLLKV----AIDNARAQE 523 (641)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHH
Confidence 4455555555554 355555543
No 361
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=22.27 E-value=2.7e+02 Score=23.61 Aligned_cols=34 Identities=38% Similarity=0.481 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 61 ERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 61 ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+|=++|+.+|.|... |-+.-...+.||..+|+..
T Consensus 115 ~RR~AL~eaL~ENe~-Lh~~ie~~~eEi~~lk~en 148 (200)
T PF07412_consen 115 ERRKALEEALEENEK-LHKEIEQKDEEIAKLKEEN 148 (200)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 466899999998876 6666666666666666533
No 362
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=22.25 E-value=3.8e+02 Score=20.83 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=14.9
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELP 50 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~ 50 (153)
..+.+.|+.......+.-..-++.+..|.
T Consensus 53 ~~I~~~l~~A~~~~~ea~~~~~~~~~~L~ 81 (174)
T PRK07352 53 EAILQALKEAEERLRQAAQALAEAQQKLA 81 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666555554444444444443
No 363
>KOG0979|consensus
Probab=22.14 E-value=6.8e+02 Score=26.41 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA 69 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~a 69 (153)
++.+-.-||.++++=|.--.+|.+.+..|+++|.+.-.|.+-. ++|..||..
T Consensus 186 lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer~~~~-~~Ie~l~~k 237 (1072)
T KOG0979|consen 186 LREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRERERKK-SKIELLEKK 237 (1072)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 3444455677777777777788888888888887776666544 346666554
No 364
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=22.14 E-value=99 Score=21.34 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=12.7
Q ss_pred HHHHhhhhhhhcchHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKr 55 (153)
..|-.-...|+.|++++|.|
T Consensus 34 ~~i~~al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 34 GDIAAALEKLKAEIAKLEAR 53 (53)
T ss_pred hHHHHHHHHHHHHHHHHhcC
Confidence 34444556677788877764
No 365
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.14 E-value=1.3e+02 Score=21.54 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=11.7
Q ss_pred HHHHhHHHHHHHHHHHH
Q psy5720 55 RLRATMERVKALETALK 71 (153)
Q Consensus 55 rL~ar~ERIk~LE~aLk 71 (153)
+...-.|||+.||..|-
T Consensus 50 ~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 50 KADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33444678999998774
No 366
>COG5462 Predicted secreted (periplasmic) protein [Function unknown]
Probab=22.13 E-value=2.1e+02 Score=23.19 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=31.2
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA 69 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~a 69 (153)
-|..|+|+.+||+|.-.+|... +|-++|.=|.+--.|.+.|=++
T Consensus 27 ae~~l~~vrkl~~qI~sE~dtI--dlLkAdwAlLtqP~RLekLa~a 70 (138)
T COG5462 27 AETQLAEVRKLHAQIKSEEDTI--DLLKADWALLTQPNRLEKLAAA 70 (138)
T ss_pred HHHHHHHHHHHHHHHhcccchH--HHHHHhHHHHcCchHHHHHHHH
Confidence 3788999999999998665432 4566777776666666666543
No 367
>PRK11638 lipopolysaccharide biosynthesis protein WzzE; Provisional
Probab=22.05 E-value=4.3e+02 Score=23.48 Aligned_cols=29 Identities=17% Similarity=0.350 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhcCCCCCCccccccCC
Q psy5720 81 RKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRA 115 (153)
Q Consensus 81 ~~ryq~Ev~riKe~l~~~n~~rr~~~arIAKPiRg 115 (153)
+..++.+|++++++|.-+++ |-|-||.-.
T Consensus 211 k~~~~~~i~rl~~AL~IA~a------agI~~p~~~ 239 (342)
T PRK11638 211 KAIYDREVNSVEQALKIAEQ------QGISRSQTD 239 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHH------cCCCCCCcc
Confidence 45678899999999988865 455666543
No 368
>PRK14150 heat shock protein GrpE; Provisional
Probab=21.97 E-value=4.5e+02 Score=21.58 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=7.7
Q ss_pred hhhHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKE 93 (153)
Q Consensus 80 ~~~ryq~Ev~riKe 93 (153)
=|+|++.|++.++.
T Consensus 71 ~rkR~~kE~~~~~~ 84 (193)
T PRK14150 71 IRRRAEQDVEKAHK 84 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 35555666655544
No 369
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=21.64 E-value=5e+02 Score=21.94 Aligned_cols=17 Identities=35% Similarity=0.696 Sum_probs=8.6
Q ss_pred hhhhhhhcchHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRL 56 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL 56 (153)
.+..+|...++.+|+.|
T Consensus 82 ~~~~~l~~~i~~le~~l 98 (196)
T PF15272_consen 82 KQSEDLQSRISNLEKQL 98 (196)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34444555555555555
No 370
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.64 E-value=4.9e+02 Score=21.89 Aligned_cols=7 Identities=0% Similarity=-0.031 Sum_probs=3.4
Q ss_pred CCCcccc
Q psy5720 105 PAPQIAK 111 (153)
Q Consensus 105 ~~arIAK 111 (153)
+...|..
T Consensus 278 ~dG~V~~ 284 (423)
T TIGR01843 278 VDGTVQS 284 (423)
T ss_pred CCcEEEE
Confidence 3445554
No 371
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=21.62 E-value=1e+02 Score=23.27 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 34 VHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 34 VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
|-..|..+-+.+++.+....++-+....|+..|+..++|
T Consensus 80 v~~~l~~~~~~~~rQl~aE~~k~~~~~~r~~~l~~~i~~ 118 (118)
T PF08514_consen 80 VAKSLSEELEKTQRQLEAEKKKKRKNKSRLEELEQKIKE 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHhcC
Confidence 333333333344444433344444445577777776553
No 372
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=21.59 E-value=8.3e+02 Score=24.54 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=26.3
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
+|+-.+.+.|+++..--.+|.+||..|++-...+...+.|+
T Consensus 382 ~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl 422 (775)
T PF10174_consen 382 DLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERL 422 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777787777888888888866444333333333
No 373
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=21.29 E-value=3.9e+02 Score=20.61 Aligned_cols=36 Identities=19% Similarity=0.332 Sum_probs=17.2
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
+.-|...+.+|+.=-.+|-.++..|+.||..+.+.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444455555444444444455555555444444
No 374
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=21.28 E-value=3.3e+02 Score=20.76 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~l~~~ 98 (153)
++.+++..+++...++...
T Consensus 111 ~~~~a~~~l~ra~arl~~~ 129 (134)
T CHL00063 111 QKIEANLALKRARARVEAI 129 (134)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455566666665555543
No 375
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.27 E-value=4.1e+02 Score=20.81 Aligned_cols=17 Identities=6% Similarity=0.278 Sum_probs=7.6
Q ss_pred HHhhHHHHHHHHHHHHh
Q psy5720 24 LENNLDQLTKVHKQLVR 40 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~ 40 (153)
+.+.|+.-...+.+.-.
T Consensus 54 I~~~l~~Ae~~~~eA~~ 70 (173)
T PRK13453 54 INRDIDDAEQAKLNAQK 70 (173)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445554444444333
No 376
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=21.24 E-value=3.9e+02 Score=20.56 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy5720 59 TMERVKALETALKEAKEG 76 (153)
Q Consensus 59 r~ERIk~LE~aLkeakE~ 76 (153)
...-|+++|..|+|-++.
T Consensus 42 ~~~~~K~~ekElKeEKe~ 59 (108)
T PF03879_consen 42 ELKAIKEKEKELKEEKEA 59 (108)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567777777766653
No 377
>PF07352 Phage_Mu_Gam: Bacteriophage Mu Gam like protein; InterPro: IPR009951 The Gam protein, originally characterised in Bacteriophage Mu, protects linear double stranded DNA from exonuclease degradation in vitro and in vivo []. This protein is also found in many bacterial species as part of a suspected prophage. Further studies have shown that Gam is a functional counterpart of the eukaryotic Ku protein, which has key roles in DNA repair and in certain transposition events. Gam displays DNA binding characteristics remarkably similar to those of human Ku []. In addition, Gam can interfere with Ty1 retrotransposition in Saccharomyces cerevisiae (Baker's yeast). These data reveal structural and functional parallels between bacteriophage Gam and eukaryotic Ku and suggest that their functions have been evolutionarily conserved [].; GO: 0003690 double-stranded DNA binding, 0042262 DNA protection; PDB: 2P2U_B.
Probab=21.24 E-value=3.8e+02 Score=20.50 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=4.3
Q ss_pred hhhcchHHHHH
Q psy5720 44 DLRCELPKLEK 54 (153)
Q Consensus 44 ~Lk~El~klEK 54 (153)
+|+.++..++.
T Consensus 14 ~l~~~~~~i~~ 24 (149)
T PF07352_consen 14 ELQREIARIEA 24 (149)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 378
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=21.12 E-value=4e+02 Score=20.71 Aligned_cols=14 Identities=7% Similarity=0.401 Sum_probs=5.8
Q ss_pred HHhhHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQ 37 (153)
Q Consensus 24 LE~NLEQLT~VhKQ 37 (153)
+.+.|+.-.....+
T Consensus 54 I~~~l~~Ae~~~~e 67 (175)
T PRK14472 54 IQSSIDRAHSAKDE 67 (175)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 379
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=21.12 E-value=4.3e+02 Score=23.49 Aligned_cols=48 Identities=13% Similarity=0.274 Sum_probs=24.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
..++.++..-..+|..|+..|.+.. +.-+..+.++.+++....++...
T Consensus 245 ~~l~~~~~~~~~~i~~l~~~l~~~~-k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 245 ESLQEKLEKLEKEIEKLEEKLEKNP-KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-T-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555554444 44445555555555555554443
No 380
>PRK06798 fliD flagellar capping protein; Validated
Probab=20.73 E-value=5.2e+02 Score=23.66 Aligned_cols=55 Identities=7% Similarity=0.211 Sum_probs=34.1
Q ss_pred HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
.++..+..|......++.++..=.+|+..||..|..-.+++.++.-.++.-|.++
T Consensus 369 ~~~~~~G~i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~l 423 (440)
T PRK06798 369 KIFGDEGIIGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAAL 423 (440)
T ss_pred hhhCCCceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677777777777777777777777766665555555555444444444
No 381
>PRK14140 heat shock protein GrpE; Provisional
Probab=20.62 E-value=5e+02 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.168 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 65 ALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 65 ~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
.|+..+.-++..+-.-|+|.+.|++.++.
T Consensus 55 elkd~~lR~~Ae~eN~rkR~~rE~~~~~~ 83 (191)
T PRK14140 55 ELEERYLRLQADFENYKRRIQKENEAAEK 83 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444455556666655554
No 382
>cd08065 MPN_eIF3h Mpr1p, Pad1p N-terminal (MPN) domains without catalytic isopeptidase activity, found in eIF2h. Eukaryotic translation initiation factor 3 (eIF3) subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma; eIF3-p40) is an evolutionarily non-conserved subunit of the functional core that comprises eIF3a, eIF3b, eIF3c, eIF3e, eIF3f, and eIF3h, and contains the MPN domain. However, it lacks the canonical JAMM motif, and therefore does not show catalytic isopeptidase activity.Together with eIF3e and eIF3f, eIF3h stabilizes the eIF3 complex. Results suggest that eIF3h regulates cell growth and viability, and that over-expression of the gene may provide growth advantage to prostate, breast, and liver cancer cells. For example, EIF3h gene amplification is common in late-stage prostate cancer suggesting that it may be functionally involved in the progression of the disease. It has been shown that coamplification of MYC, a well characterized oncogene involved in cell growth, different
Probab=20.62 E-value=3.4e+02 Score=22.84 Aligned_cols=12 Identities=58% Similarity=0.753 Sum_probs=7.8
Q ss_pred HHHHHhhHHHHH
Q psy5720 21 ISFLENNLDQLT 32 (153)
Q Consensus 21 iaFLE~NLEQLT 32 (153)
..|||+||+.|+
T Consensus 202 ~~~le~~l~~l~ 213 (266)
T cd08065 202 NSFLEKNLELLM 213 (266)
T ss_pred chhHHHHHHHHH
Confidence 566777776665
No 383
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=20.53 E-value=2.3e+02 Score=24.03 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=18.8
Q ss_pred Hhhhhhhhc----chHHHHHHHHHhHHHHHHHHHHH
Q psy5720 39 VRDNADLRC----ELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 39 V~dNa~Lk~----El~klEKrL~ar~ERIk~LE~aL 70 (153)
..|+.+... .-|-+++.+..--+||.+||.-+
T Consensus 95 fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~ 130 (189)
T TIGR02132 95 FDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKL 130 (189)
T ss_pred HHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHH
Confidence 355554444 44666666666666666666543
No 384
>PHA02607 wac fibritin; Provisional
Probab=20.35 E-value=1.2e+02 Score=28.75 Aligned_cols=69 Identities=32% Similarity=0.427 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcch-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCEL-PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El-~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
..|.++|.-||+++.... .=||..+=.+||.|+ |.-..-=..=-.|+..||... --++-+|+.||.
T Consensus 187 ~~~~~Ri~~LE~~~~~sd--Vg~Lt~~v~~lR~ElG~~~~at~~~iY~RL~~lE~~~-----------~~~~~eI~~Ik~ 253 (454)
T PHA02607 187 VDHGQRITELENDWADSD--VGQLTREVNDLRAELGPSSLATGEPIYTRLNTLEDAI-----------TGINSDIDEIKT 253 (454)
T ss_pred HhhhhHHHHHHhhhhhcC--chHHHHHHHHHHHHhCCCCcccCccHHHHHHHHhhhh-----------hhhhhHHHHHHH
Confidence 357889999999998766 247888889999999 333333345567889999877 345667888888
Q ss_pred HHH
Q psy5720 94 AVR 96 (153)
Q Consensus 94 ~l~ 96 (153)
++-
T Consensus 254 ~Ig 256 (454)
T PHA02607 254 AIG 256 (454)
T ss_pred HhC
Confidence 775
No 385
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=20.25 E-value=2.1e+02 Score=28.07 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=54.0
Q ss_pred HHHHHHHhhHHHHHHHHHH-HHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Q psy5720 19 QKISFLENNLDQLTKVHKQ-LVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQ-LV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~r 83 (153)
|=-+.|+-.|-+||+.... |..+-.+|..|+..++.-|....+..+-+-.-|++-+++.-..|+.
T Consensus 412 q~~~il~m~l~~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~RRT 477 (738)
T TIGR01061 412 QAEAIVSLRLYRLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRS 477 (738)
T ss_pred HHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCce
Confidence 5557788899999987764 4467799999999999999999999999999999988887777666
No 386
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=20.21 E-value=4.9e+02 Score=21.34 Aligned_cols=70 Identities=29% Similarity=0.432 Sum_probs=35.4
Q ss_pred HHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh-------HHHHHHHHHHHHHHHHH----------HHHhhhHHH
Q psy5720 23 FLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT-------MERVKALETALKEAKEG----------AMKDRKRYQ 85 (153)
Q Consensus 23 FLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar-------~ERIk~LE~aLkeakE~----------~~k~~~ryq 85 (153)
||..-|++|-...- +-..+..+.-.+|+++... -+.|..||.-|-+-++. ..++-.+.+
T Consensus 90 ~l~~RL~kLL~lk~----~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 90 FLRSRLNKLLSLKD----DQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred HHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666554433 2233444444555555444 55566666655555543 333445555
Q ss_pred HHHHHHHHHHH
Q psy5720 86 YEVDRIKEAVR 96 (153)
Q Consensus 86 ~Ev~riKe~l~ 96 (153)
..++.|++.+.
T Consensus 166 s~~~~l~~~~~ 176 (190)
T PF05266_consen 166 SEAEALKEEIE 176 (190)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 387
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=20.19 E-value=6.1e+02 Score=24.76 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=30.8
Q ss_pred HhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 39 VRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 39 V~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
+..+..+.....-+++++..-..+|..||..|..-.+++.++.-.++.-|..+
T Consensus 592 t~~~G~i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqm 644 (661)
T PRK06664 592 TQAGGIIYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKM 644 (661)
T ss_pred HcCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555667777777777777777766665555555544444444443
No 388
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.14 E-value=7.5e+02 Score=23.47 Aligned_cols=85 Identities=13% Similarity=0.153 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHH----hh
Q psy5720 13 GSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA-------TMERVKALETALKEAKEGAMK----DR 81 (153)
Q Consensus 13 gs~aQkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a-------r~ERIk~LE~aLkeakE~~~k----~~ 81 (153)
-+..+.+++.-.+..++.--+..+++.+.=+.|..-+-.++.+|.. +.|=...|+..|.+..+-+.. +.
T Consensus 512 ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~~~~~~~ 591 (653)
T PTZ00009 512 LSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591 (653)
T ss_pred ccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 3444555554444444433334444444344455555666666642 344445666666666665542 33
Q ss_pred hHHHHHHHHHHHHHHH
Q psy5720 82 KRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 82 ~ryq~Ev~riKe~l~~ 97 (153)
+.|.+.++.++..+..
T Consensus 592 ~~~~~kl~eL~~~~~p 607 (653)
T PTZ00009 592 EEFEHKQKEVESVCNP 607 (653)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777665543
No 389
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=20.12 E-value=2e+02 Score=24.46 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhhhhcchHHHHHHHHH
Q psy5720 33 KVHKQLVRDNADLRCELPKLEKRLRA 58 (153)
Q Consensus 33 ~VhKQLV~dNa~Lk~El~klEKrL~a 58 (153)
..++.|-..|..||..+-.+|+.+..
T Consensus 11 ~ln~~~~~e~~~Lk~kir~le~~l~~ 36 (236)
T PF12017_consen 11 ILNRTLKIENKKLKKKIRRLEKELKK 36 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666655555554443
No 390
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.08 E-value=3.9e+02 Score=20.98 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=10.3
Q ss_pred HHHhhhhhhhcchHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~ 57 (153)
.|+.+...++.++..+.+...
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~ 142 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAE 142 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555554443
No 391
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=20.04 E-value=1.8e+02 Score=25.10 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=31.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh-----------HHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT-----------MERVKALETALKEAKEG 76 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar-----------~ERIk~LE~aLkeakE~ 76 (153)
++-.+|+.=+++|..+.-+ -+ =+.+|.++... .-+|.-+|.+|+.++.+
T Consensus 4 eE~qLI~~lf~RL~~ae~~-pr--------D~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~r 63 (247)
T PF09849_consen 4 EERQLIDDLFSRLKQAEAQ-PR--------DPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQAR 63 (247)
T ss_pred HHHHHHHHHHHHHHhccCC-CC--------CHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777888777655 11 14455555433 45788889999888764
No 392
>KOG1003|consensus
Probab=20.04 E-value=5.7e+02 Score=21.99 Aligned_cols=72 Identities=32% Similarity=0.429 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHhhHH----HHHHHHHHHHh--hhhhhhcc-hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5720 14 SLAQRQKISFLENNLD----QLTKVHKQLVR--DNADLRCE-LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ 85 (153)
Q Consensus 14 s~aQkQKiaFLE~NLE----QLT~VhKQLV~--dNa~Lk~E-l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq 85 (153)
-.+...+|..||..|| .|...+-+|+. ++++=.|- .-.++-|.-.--|++..+|.-|++|+--+-..-++|.
T Consensus 6 va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~e 84 (205)
T KOG1003|consen 6 VAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKYE 84 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678889999988875 57777777773 33443332 2456777777889999999999999976666555554
No 393
>PRK10626 hypothetical protein; Provisional
Probab=20.02 E-value=2e+02 Score=24.96 Aligned_cols=27 Identities=30% Similarity=0.485 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhh-hhhhcchHHHHHHH
Q psy5720 30 QLTKVHKQLVRDN-ADLRCELPKLEKRL 56 (153)
Q Consensus 30 QLT~VhKQLV~dN-a~Lk~El~klEKrL 56 (153)
.||.-|+|++.+. ..|+..||.+..--
T Consensus 64 ~L~~~Qqq~~~~Yq~~lr~~lP~i~~~a 91 (239)
T PRK10626 64 SLNAAQRQQAKDYQAALRQDLPWIDEGA 91 (239)
T ss_pred cCCHHHHHHHHHHHHHHHHHChHHHHHH
Confidence 3667777777777 67777777765533
No 394
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=20.02 E-value=1.6e+02 Score=21.77 Aligned_cols=27 Identities=37% Similarity=0.544 Sum_probs=16.7
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
|+.|...++++|...-++++.|+.-++
T Consensus 6 l~~e~e~~~~kl~q~e~~~k~L~nr~k 32 (86)
T PF12958_consen 6 LQAEIEKAEKKLEQAEHKIKQLENRKK 32 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666666444
Done!