Query psy5720
Match_columns 153
No_of_seqs 84 out of 86
Neff 3.2
Searched_HMMs 29240
Date Sat Aug 17 00:54:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5720.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5720hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 92.0 2.6 8.8E-05 30.6 11.7 59 18-76 5-63 (284)
2 3tnu_A Keratin, type I cytoske 88.7 4.9 0.00017 29.5 9.7 75 21-96 40-118 (131)
3 3tnu_B Keratin, type II cytosk 88.2 6 0.0002 28.9 11.1 78 18-96 35-116 (129)
4 1d7m_A Cortexillin I; coiled-c 86.6 5.1 0.00017 29.6 8.5 60 19-78 4-63 (101)
5 1gd2_E Transcription factor PA 86.2 1.6 5.6E-05 29.9 5.4 40 18-57 28-67 (70)
6 2v71_A Nuclear distribution pr 85.8 12 0.00042 29.9 11.2 38 22-59 45-82 (189)
7 2no2_A HIP-I, huntingtin-inter 85.3 7.7 0.00026 28.2 9.0 40 35-74 3-42 (107)
8 2dfs_A Myosin-5A; myosin-V, in 85.0 8.5 0.00029 37.3 11.6 76 18-93 959-1044(1080)
9 3hnw_A Uncharacterized protein 84.8 3.2 0.00011 31.4 6.9 29 43-71 106-134 (138)
10 3tnu_A Keratin, type I cytoske 84.4 5.6 0.00019 29.2 7.9 58 41-98 39-96 (131)
11 3tnu_B Keratin, type II cytosk 84.1 6.9 0.00024 28.5 8.4 58 41-98 37-94 (129)
12 3mov_A Lamin-B1; LMNB1, B-type 82.3 6.7 0.00023 28.0 7.5 55 41-96 20-78 (95)
13 3a7p_A Autophagy protein 16; c 82.3 8.1 0.00028 30.3 8.5 60 36-95 57-119 (152)
14 1ic2_A Tropomyosin alpha chain 81.3 10 0.00035 25.7 9.8 62 18-79 5-66 (81)
15 1gk4_A Vimentin; intermediate 81.2 11 0.00037 25.9 8.1 56 40-96 8-67 (84)
16 4etp_A Kinesin-like protein KA 80.1 4.4 0.00015 34.9 6.9 53 44-96 7-62 (403)
17 1t2k_D Cyclic-AMP-dependent tr 80.0 2.5 8.5E-05 27.4 4.1 39 18-56 21-59 (61)
18 2wuj_A Septum site-determining 78.8 1 3.5E-05 29.3 2.0 29 28-56 29-57 (57)
19 2dfs_A Myosin-5A; myosin-V, in 77.3 25 0.00084 34.1 11.7 61 36-96 956-1022(1080)
20 1x8y_A Lamin A/C; structural p 75.8 15 0.00052 25.3 7.5 55 40-95 10-68 (86)
21 2v4h_A NF-kappa-B essential mo 73.3 26 0.0009 26.2 10.0 65 30-98 32-102 (110)
22 3cvf_A Homer-3, homer protein 73.1 17 0.00058 25.6 7.1 52 41-96 7-58 (79)
23 3oja_B Anopheles plasmodium-re 71.7 46 0.0016 28.3 11.6 13 60-72 515-527 (597)
24 4emc_A Monopolin complex subun 71.6 17 0.00058 29.5 7.7 96 25-130 12-107 (190)
25 3nmd_A CGMP dependent protein 70.3 9.9 0.00034 26.5 5.3 44 44-91 23-66 (72)
26 1jnm_A Proto-oncogene C-JUN; B 70.0 3.7 0.00013 26.7 3.0 39 17-55 20-58 (62)
27 1m1j_C Fibrinogen gamma chain; 68.2 31 0.0011 30.3 9.3 55 19-73 38-117 (409)
28 1go4_E MAD1 (mitotic arrest de 68.0 28 0.00096 25.4 7.6 71 28-98 14-94 (100)
29 3o0z_A RHO-associated protein 67.8 23 0.00078 28.0 7.6 49 20-68 7-62 (168)
30 3c3f_A Alpha/beta peptide with 66.2 9.9 0.00034 23.3 4.1 30 62-95 2-31 (34)
31 3na7_A HP0958; flagellar bioge 65.9 48 0.0016 26.2 9.9 21 53-73 110-130 (256)
32 1i84_S Smooth muscle myosin he 65.4 46 0.0016 32.0 10.6 40 17-56 862-901 (1184)
33 3efg_A Protein SLYX homolog; x 64.9 6.4 0.00022 27.2 3.5 43 19-68 21-63 (78)
34 2efr_A General control protein 64.6 47 0.0016 25.7 10.5 29 45-73 26-54 (155)
35 2bni_A General control protein 64.5 6.8 0.00023 24.0 3.1 32 61-96 1-32 (34)
36 2lw1_A ABC transporter ATP-bin 64.1 14 0.00048 25.3 5.2 27 46-72 21-47 (89)
37 2v71_A Nuclear distribution pr 64.0 24 0.00081 28.3 7.1 42 50-92 133-174 (189)
38 1gmj_A ATPase inhibitor; coile 63.7 34 0.0012 24.4 7.2 50 19-68 30-79 (84)
39 3na7_A HP0958; flagellar bioge 63.7 53 0.0018 26.0 9.7 7 110-116 193-199 (256)
40 2dgc_A Protein (GCN4); basic d 62.6 9.4 0.00032 25.3 3.8 31 18-48 29-59 (63)
41 3u06_A Protein claret segregat 62.3 6.3 0.00022 34.2 3.7 18 79-96 45-62 (412)
42 3oja_A Leucine-rich immune mol 62.0 35 0.0012 28.5 8.2 14 80-93 436-449 (487)
43 2jee_A YIIU; FTSZ, septum, coi 61.2 41 0.0014 23.8 9.2 66 28-97 8-73 (81)
44 1ci6_A Transcription factor AT 59.5 20 0.00068 23.5 5.0 29 18-53 22-50 (63)
45 2wt7_A Proto-oncogene protein 59.1 22 0.00076 23.1 5.2 26 19-51 23-48 (63)
46 3c3f_A Alpha/beta peptide with 58.6 7.6 0.00026 23.8 2.6 30 20-56 2-31 (34)
47 3oja_B Anopheles plasmodium-re 58.5 58 0.002 27.7 9.0 26 30-55 506-531 (597)
48 4etp_A Kinesin-like protein KA 58.5 23 0.00079 30.4 6.6 31 40-70 24-54 (403)
49 1lwu_C Fibrinogen gamma chain; 57.1 22 0.00077 30.3 6.2 49 41-93 6-54 (323)
50 1hs7_A Syntaxin VAM3; UP-and-D 56.8 52 0.0018 23.6 7.4 76 21-98 12-90 (97)
51 2efr_A General control protein 56.2 67 0.0023 24.8 10.3 28 43-70 101-128 (155)
52 1kd8_B GABH BLL, GCN4 acid bas 55.9 8.9 0.0003 23.8 2.6 31 20-57 2-32 (36)
53 3m91_A Proteasome-associated A 51.6 46 0.0016 21.5 6.3 27 52-78 14-40 (51)
54 1zxa_A CGMP-dependent protein 51.1 29 0.001 23.7 4.9 42 51-96 15-56 (67)
55 1deb_A APC protein, adenomatou 50.4 36 0.0012 22.7 5.0 38 37-74 7-44 (54)
56 2wt7_A Proto-oncogene protein 50.2 30 0.001 22.4 4.7 19 77-95 35-53 (63)
57 1gk6_A Vimentin; intermediate 49.5 43 0.0015 21.6 5.3 37 59-96 5-41 (59)
58 3u06_A Protein claret segregat 47.8 28 0.00096 30.1 5.4 31 45-75 8-38 (412)
59 3bj4_A Potassium voltage-gated 47.8 21 0.00072 23.3 3.5 24 19-42 24-47 (49)
60 2jee_A YIIU; FTSZ, septum, coi 46.9 57 0.0019 23.0 6.0 22 36-57 51-72 (81)
61 2r2v_A GCN4 leucine zipper; co 46.5 16 0.00053 22.4 2.6 31 19-56 1-31 (34)
62 3vkg_A Dynein heavy chain, cyt 46.5 50 0.0017 36.1 7.9 52 45-96 2012-2073(3245)
63 3m48_A General control protein 46.2 12 0.0004 22.8 2.0 20 37-56 11-30 (33)
64 3cve_A Homer protein homolog 1 46.1 70 0.0024 22.0 7.4 33 60-96 20-52 (72)
65 2wq1_A General control protein 45.5 23 0.00077 21.6 3.2 29 21-56 2-30 (33)
66 3u1c_A Tropomyosin alpha-1 cha 44.3 80 0.0027 22.2 9.8 64 16-79 6-76 (101)
67 4emc_A Monopolin complex subun 44.3 67 0.0023 26.0 6.7 35 43-77 23-57 (190)
68 3c3g_A Alpha/beta peptide with 43.2 51 0.0017 20.0 4.5 23 74-96 9-31 (33)
69 2b9c_A Striated-muscle alpha t 42.9 1.1E+02 0.0036 23.2 8.2 37 49-85 40-76 (147)
70 3vkg_A Dynein heavy chain, cyt 42.8 1.8E+02 0.0061 32.0 11.3 49 45-93 2040-2098(3245)
71 1dh3_A Transcription factor CR 42.8 32 0.0011 22.0 3.9 28 19-53 22-49 (55)
72 3swf_A CGMP-gated cation chann 42.6 42 0.0015 23.4 4.7 44 19-72 7-50 (74)
73 1gk4_A Vimentin; intermediate 42.0 79 0.0027 21.4 6.2 35 63-97 10-44 (84)
74 1m1j_B Fibrinogen beta chain; 40.9 2E+02 0.0068 25.7 10.1 12 21-32 102-113 (464)
75 2hy6_A General control protein 40.7 58 0.002 19.9 4.5 25 72-96 8-32 (34)
76 3ghg_A Fibrinogen alpha chain; 40.5 60 0.002 30.1 6.6 36 44-79 114-149 (562)
77 2cly_A ATP synthase B chain, m 40.3 1.4E+02 0.0049 24.0 8.4 33 36-68 125-157 (214)
78 3o0z_A RHO-associated protein 40.0 1.4E+02 0.0046 23.6 9.9 64 26-89 55-128 (168)
79 3v6i_A V-type ATP synthase sub 39.8 1.1E+02 0.0039 22.7 7.1 6 70-75 30-35 (187)
80 2oxj_A Hybrid alpha/beta pepti 39.8 61 0.0021 19.8 4.5 30 62-95 2-31 (34)
81 1fxk_C Protein (prefoldin); ar 38.6 1E+02 0.0035 21.7 7.0 11 22-32 91-101 (133)
82 3mov_A Lamin-B1; LMNB1, B-type 38.0 80 0.0027 22.3 5.7 23 38-60 8-32 (95)
83 3jsv_C NF-kappa-B essential mo 37.6 1.2E+02 0.004 22.1 8.1 67 29-99 9-81 (94)
84 1nkp_A C-MYC, MYC proto-oncoge 36.9 37 0.0013 23.4 3.7 11 38-48 71-81 (88)
85 3vp9_A General transcriptional 36.6 1.2E+02 0.004 21.8 6.8 47 52-98 41-87 (92)
86 1dh3_A Transcription factor CR 36.3 29 0.00098 22.3 2.8 15 80-94 37-51 (55)
87 2b9c_A Striated-muscle alpha t 35.8 1.4E+02 0.0048 22.5 8.0 77 19-95 52-138 (147)
88 3lay_A Zinc resistance-associa 35.6 1.5E+02 0.0053 22.9 8.6 72 14-89 69-141 (175)
89 1x8y_A Lamin A/C; structural p 35.5 78 0.0027 21.7 5.2 31 65-95 14-44 (86)
90 1gd2_E Transcription factor PA 35.5 85 0.0029 21.2 5.3 36 60-95 28-66 (70)
91 2j5u_A MREC protein; bacterial 35.1 23 0.00077 28.6 2.7 21 36-56 22-42 (255)
92 3swy_A Cyclic nucleotide-gated 34.7 57 0.0019 20.8 4.0 24 19-42 5-28 (46)
93 1hjb_A Ccaat/enhancer binding 34.7 74 0.0025 22.4 5.0 29 18-53 35-63 (87)
94 3k29_A Putative uncharacterize 34.7 1.7E+02 0.0058 23.2 7.6 62 18-79 54-117 (169)
95 2zvf_A Alanyl-tRNA synthetase; 34.0 1.3E+02 0.0044 21.7 6.5 34 43-76 21-54 (171)
96 4h22_A Leucine-rich repeat fli 33.9 1.4E+02 0.0047 22.0 6.5 33 21-53 32-64 (103)
97 3s4r_A Vimentin; alpha-helix, 33.4 1.2E+02 0.0042 21.1 8.0 57 36-95 26-86 (93)
98 1uo4_A General control protein 32.9 25 0.00087 21.5 2.0 19 38-56 13-31 (34)
99 1a92_A Delta antigen; leucine 32.8 49 0.0017 21.7 3.5 26 43-68 10-35 (50)
100 1ykh_B RNA polymerase II holoe 32.8 94 0.0032 22.9 5.6 54 44-97 75-128 (132)
101 1yke_B RNA polymerase II holoe 32.4 1E+02 0.0035 23.4 5.9 57 44-100 75-131 (151)
102 2dii_A TFIIH basal transcripti 32.0 43 0.0015 22.6 3.2 26 15-41 14-39 (61)
103 3oja_A Leucine-rich immune mol 31.4 2.3E+02 0.0077 23.6 11.1 15 79-93 449-463 (487)
104 3a7o_A Autophagy protein 16; c 30.9 1.3E+02 0.0044 21.2 5.6 37 38-74 9-45 (75)
105 2w83_C C-JUN-amino-terminal ki 30.8 40 0.0014 23.8 3.0 12 50-61 29-40 (77)
106 2wt7_B Transcription factor MA 30.3 83 0.0028 22.4 4.7 32 22-53 51-82 (90)
107 1nkp_B MAX protein, MYC proto- 30.2 31 0.0011 23.1 2.3 9 20-28 38-46 (83)
108 3q0x_A Centriole protein; cent 29.6 1.7E+02 0.0059 23.8 7.1 51 33-83 164-214 (228)
109 1cii_A Colicin IA; bacteriocin 29.4 3.5E+02 0.012 25.2 11.2 53 43-96 380-432 (602)
110 1s94_A S-syntaxin; three helix 29.3 1.7E+02 0.0059 21.6 9.6 55 18-72 49-110 (180)
111 2v4h_A NF-kappa-B essential mo 28.8 1.8E+02 0.0062 21.6 7.1 58 43-101 27-84 (110)
112 2l5g_A GPS2 protein, G protein 28.6 64 0.0022 20.1 3.3 22 18-39 14-35 (38)
113 3fpp_A Macrolide-specific effl 28.2 2.1E+02 0.0073 22.3 7.4 15 17-31 67-81 (341)
114 4akg_A Glutathione S-transfera 28.1 2.7E+02 0.0093 29.9 9.8 70 29-98 2142-2224(2695)
115 2l3l_A Tubulin-specific chaper 28.1 1.5E+02 0.0053 21.3 5.9 48 53-100 57-105 (111)
116 1deq_A Fibrinogen (alpha chain 27.9 2.3E+02 0.0079 25.2 8.0 58 17-74 65-147 (390)
117 3efg_A Protein SLYX homolog; x 27.8 95 0.0033 21.2 4.5 52 43-98 10-61 (78)
118 2p4v_A Transcription elongatio 27.5 1.1E+02 0.0038 22.9 5.3 13 22-34 12-24 (158)
119 3u59_A Tropomyosin beta chain; 25.9 1.7E+02 0.0057 20.3 11.0 64 16-79 6-76 (101)
120 1grj_A GREA protein; transcrip 25.7 1.2E+02 0.004 22.6 5.1 15 22-36 12-26 (158)
121 2dq0_A Seryl-tRNA synthetase; 25.7 2.5E+02 0.0086 24.4 7.8 8 88-95 92-99 (455)
122 1gu4_A CAAT/enhancer binding p 25.6 89 0.003 21.5 4.0 29 19-54 36-64 (78)
123 2zdi_C Prefoldin subunit alpha 25.6 1.5E+02 0.0051 21.5 5.6 15 59-73 124-138 (151)
124 1jcd_A Major outer membrane li 25.4 1.4E+02 0.0048 19.3 5.4 44 20-84 5-48 (52)
125 3cl3_D NF-kappa-B essential mo 25.4 1.3E+02 0.0043 23.1 5.2 55 27-84 31-85 (130)
126 2dgc_A Protein (GCN4); basic d 25.3 45 0.0015 21.9 2.4 25 29-53 33-57 (63)
127 2xv5_A Lamin-A/C; structural p 25.2 1.6E+02 0.0056 19.9 7.3 37 59-96 10-46 (74)
128 1v9v_A KIAA0561 protein; helix 25.2 61 0.0021 24.4 3.3 43 31-76 38-83 (114)
129 2v66_B Nuclear distribution pr 25.1 2E+02 0.007 21.1 8.0 55 21-75 37-91 (111)
130 3b8m_A Ferric enterobactin (en 24.8 2.8E+02 0.0095 22.5 7.9 33 79-117 177-209 (280)
131 1nkp_B MAX protein, MYC proto- 24.8 64 0.0022 21.5 3.1 17 56-72 42-58 (83)
132 4b4t_K 26S protease regulatory 24.3 1.2E+02 0.0042 26.1 5.6 36 21-56 23-58 (428)
133 2f23_A Anti-cleavage anti-GREA 24.2 1.6E+02 0.0056 21.7 5.6 12 85-96 59-70 (156)
134 3qne_A Seryl-tRNA synthetase, 23.9 2.2E+02 0.0075 25.4 7.2 14 83-96 89-102 (485)
135 1g6u_A Domain swapped dimer; d 23.9 72 0.0025 20.5 3.0 22 43-64 23-44 (48)
136 3c9i_A Tail needle protein GP2 23.7 63 0.0022 27.0 3.5 26 46-71 211-236 (242)
137 3lay_A Zinc resistance-associa 22.9 2.7E+02 0.0091 21.6 8.1 29 31-59 68-97 (175)
138 3v1a_A Computational design, M 22.6 51 0.0017 21.3 2.1 15 20-34 28-42 (48)
139 1ic2_A Tropomyosin alpha chain 22.2 1.8E+02 0.0061 19.4 9.1 12 84-95 53-64 (81)
140 2yy0_A C-MYC-binding protein; 21.9 1.1E+02 0.0038 19.5 3.7 13 44-56 23-35 (53)
141 4dk0_A Putative MACA; alpha-ha 21.9 2.9E+02 0.01 21.7 8.9 14 17-30 68-81 (369)
142 4ati_A MITF, microphthalmia-as 21.9 47 0.0016 24.1 2.1 14 20-33 65-78 (118)
143 1uii_A Geminin; human, DNA rep 21.7 2.2E+02 0.0075 20.2 5.9 33 61-94 36-68 (83)
144 3cvf_A Homer-3, homer protein 21.7 2.1E+02 0.007 19.9 5.3 49 29-77 9-57 (79)
145 3b8m_A Ferric enterobactin (en 21.2 3.3E+02 0.011 22.0 7.5 17 59-75 182-198 (280)
146 1dn1_B Syntaxin 1A, syntaxin b 20.9 2.9E+02 0.0098 22.0 6.8 53 18-70 41-100 (267)
147 3b5n_D Protein transport prote 20.9 1.8E+02 0.0062 18.9 7.4 51 24-74 8-58 (64)
148 4ghu_A TNF receptor-associated 20.9 92 0.0031 23.7 3.7 28 47-74 7-34 (198)
149 1hjb_A Ccaat/enhancer binding 20.5 99 0.0034 21.7 3.5 53 41-97 23-75 (87)
150 1joc_A EEA1, early endosomal a 20.5 1.4E+02 0.0049 21.4 4.5 15 17-31 3-17 (125)
151 3pp5_A BRK1, protein brick1; t 20.3 88 0.003 21.7 3.1 21 51-71 42-62 (73)
152 3he4_A Synzip6; heterodimeric 20.3 77 0.0026 20.9 2.7 26 31-56 22-47 (56)
153 1kd8_A GABH AIV, GCN4 acid bas 20.1 77 0.0026 19.5 2.5 31 20-57 2-32 (36)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=92.02 E-value=2.6 Score=30.58 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=39.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG 76 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~ 76 (153)
++||.-|+..++.+..--..|-.+=..|+.++..++..+..-...+..++..+......
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEA 63 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888887777777766666677676666666666666666666555444433
No 2
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.72 E-value=4.9 Score=29.45 Aligned_cols=75 Identities=17% Similarity=0.208 Sum_probs=46.5
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT----MERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar----~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
|.=|-+++..|+.==-.|-..|+.|.+.|..+|.+.... ...|..||..|..++..+.+..+-|| ++--||-+|.
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq-~Ll~vKl~Ld 118 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK-ILLDVKTRLE 118 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344444443322333455777777777766665443 44677889999988888888888886 5656665554
No 3
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.23 E-value=6 Score=28.86 Aligned_cols=78 Identities=23% Similarity=0.322 Sum_probs=52.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRA----TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~a----r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
|..|.=|-+++..|+.==-.|-..|+.|-+.|..+|.+... -...|..||..|..++..+.+..+-|| ++--||-
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl 113 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQ-ELMNTKL 113 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 34455555555555544344456677887777777766544 345677899999999998888888887 5666666
Q ss_pred HHH
Q psy5720 94 AVR 96 (153)
Q Consensus 94 ~l~ 96 (153)
+|.
T Consensus 114 ~Ld 116 (129)
T 3tnu_B 114 ALD 116 (129)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 4
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=86.57 E-value=5.1 Score=29.64 Aligned_cols=60 Identities=25% Similarity=0.349 Sum_probs=52.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~ 78 (153)
.+.+-||+.||-=..-+-+|..|-.+|+.-+..++.-=..|+-||..|++-|-++=-++-
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~ 63 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE 63 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 478889999998888899999999999999999999999999999999998888765554
No 5
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=86.16 E-value=1.6 Score=29.95 Aligned_cols=40 Identities=28% Similarity=0.459 Sum_probs=34.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ 57 (153)
.+.|.-||..+++|...+.+|..+|..|+.++..|...|.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999999999988776553
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.77 E-value=12 Score=29.94 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHh
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 59 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar 59 (153)
+.||..|+++.+-.++|...|+.|+.|+..+..++...
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~ 82 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQ 82 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777888888888888877776666554
No 7
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=85.25 E-value=7.7 Score=28.20 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=23.9
Q ss_pred HHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 35 hKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
|-.|.|.|++.-+.|.....=-.--..-++.|+.-+.+++
T Consensus 3 Hi~LLRK~aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~ 42 (107)
T 2no2_A 3 HADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERIS 42 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888887776554433333344455555555544
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=85.04 E-value=8.5 Score=37.27 Aligned_cols=76 Identities=12% Similarity=0.164 Sum_probs=46.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHH----------HhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQL----------VRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYE 87 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQL----------V~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~E 87 (153)
.++++-|+..++.|...++++ -.+.++|+.++.++.+-+...-|++..|..-|.+--..+-+++.+++++
T Consensus 959 ~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 959 STETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666766666666655543 3444555555555555555555556555555655555666688888888
Q ss_pred HHHHHH
Q psy5720 88 VDRIKE 93 (153)
Q Consensus 88 v~riKe 93 (153)
++.+..
T Consensus 1039 ~~~l~~ 1044 (1080)
T 2dfs_A 1039 KEELNR 1044 (1080)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 9
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.79 E-value=3.2 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=13.1
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
..++.++..+.+++..-.++|..||+-|.
T Consensus 106 e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 106 ESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444443
No 10
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.36 E-value=5.6 Score=29.17 Aligned_cols=58 Identities=22% Similarity=0.297 Sum_probs=42.6
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+..+|++-+..|+-.|.+---...+||..|.++......+...|+..|..+...+.+.
T Consensus 39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777766666789999999999988887777777777666666443
No 11
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.10 E-value=6.9 Score=28.50 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=43.7
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
+..+|++-+..|+-.|.+---...+||..|.++......+-..|+..|..+...+.+.
T Consensus 37 Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 37 EISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3466777777777777777777889999999999888777777777777766665443
No 12
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=82.32 E-value=6.7 Score=27.97 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=37.1
Q ss_pred hhhhhhcchHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATM----ERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~----ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+|+.|.+.+..+|.++.... ..|..||..|..++..+.++.+-|| ++--||-+|.
T Consensus 20 ~~~~LE~~l~e~E~~~~~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq-~LlnvKl~Le 78 (95)
T 3mov_A 20 ESRACLERIQELEDLLAKEKDNSRRMLTDKEREMAEIRDQMQQQLNDYE-QLLDVKLALD 78 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45555555555555544443 3477899999999998888888886 4555665554
No 13
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=82.29 E-value=8.1 Score=30.30 Aligned_cols=60 Identities=13% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE---GAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE---~~~k~~~ryq~Ev~riKe~l 95 (153)
.++|.+|..+...+..|++-|....++|..|+..|++-.- .+.-+...++.|+..+.+++
T Consensus 57 ~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl 119 (152)
T 3a7p_A 57 GNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKL 119 (152)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888888889999999999999999999977766442 22224444444444444433
No 14
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=81.29 E-value=10 Score=25.69 Aligned_cols=62 Identities=19% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
+.||.-|+..+|...-=--++-.+.-.......++|-=+.+-.-+|+.||.-|-.+++.+..
T Consensus 5 kkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~ 66 (81)
T 1ic2_A 5 KKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKD 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67787776655543322222222222222233333444444444445555544444444433
No 15
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=81.17 E-value=11 Score=25.86 Aligned_cols=56 Identities=18% Similarity=0.320 Sum_probs=38.6
Q ss_pred hhhhhhhcchHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRA----TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~a----r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+|+.|...+..+|.+... -...|..||..|..++..+.+..+-||. +=-||-+|.
T Consensus 8 ~~~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~-LlnvK~~Ld 67 (84)
T 1gk4_A 8 GTNESLERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQD-LLNVKMALD 67 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhH
Confidence 3566666666666665443 4567788999999999998888888854 444555543
No 16
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.12 E-value=4.4 Score=34.88 Aligned_cols=53 Identities=25% Similarity=0.428 Sum_probs=38.1
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe~l~ 96 (153)
.|+.++..+++.+....+.|+.|+..+++.++.+.+ .|+++..+++.+|..++
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIr 62 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIR 62 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Confidence 455666667777777777777777777777776666 67888888888876543
No 17
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=80.02 E-value=2.5 Score=27.40 Aligned_cols=39 Identities=26% Similarity=0.360 Sum_probs=28.3
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
++.+.-||...+.|+.-...|..+-..|+.|+..|.-.|
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888777777777777777776665544
No 18
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=78.79 E-value=1 Score=29.34 Aligned_cols=29 Identities=24% Similarity=0.483 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
||++..-=..|..+|.+|+.++..++.+|
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666666778888999999888887765
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=77.32 E-value=25 Score=34.13 Aligned_cols=61 Identities=15% Similarity=0.277 Sum_probs=37.7
Q ss_pred HHHHhhhhhhhcchHHHHH---HHHHhHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEK---RLRATMERVKALETALKEAKEGAM---KDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEK---rL~ar~ERIk~LE~aLkeakE~~~---k~~~ryq~Ev~riKe~l~ 96 (153)
..+..+.++|+.++..+|+ -+....+.|++||.-+.+..+.+. ++.+..++.++..++.+.
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~ 1022 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777776655443 444555677888777766665443 366666666666666554
No 20
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=75.82 E-value=15 Score=25.32 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=36.4
Q ss_pred hhhhhhhcchHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRAT----MERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar----~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
.+|++|..-+..+|-++... +..|..||..|...+..+.+..+-||. +=-||-+|
T Consensus 10 ~q~~~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~-LlnvK~~L 68 (86)
T 1x8y_A 10 CQLAAKEAKLRDLEDSLARERDTSRRLLAEKEREMAEMRARMQQQLDEYQE-LLDIKLAL 68 (86)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh
Confidence 44566666666666665543 456778999999999988888877753 33355444
No 21
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=73.31 E-value=26 Score=26.16 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=44.8
Q ss_pred HHHHHHHHHH---hhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHH
Q psy5720 30 QLTKVHKQLV---RDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 30 QLT~VhKQLV---~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe~l~~~ 98 (153)
+|+...++|. .+=..||.++.+++. -.|+|.-|++-...=++-+.. +|.+.+.|.+.+.+.|..-
T Consensus 32 ~L~~AEeaL~~Kq~~idelk~ei~q~~~----~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 32 QLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 4444555555 344667777777444 448999999877666665555 7888999999998877643
No 22
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=73.14 E-value=17 Score=25.56 Aligned_cols=52 Identities=25% Similarity=0.420 Sum_probs=28.7
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+|.++-.-|..+|-+=..--+||..||..|.+++. .+.+++.||.++-+.|.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~----~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRAMERSLEEARA----ERERARAEVGRAAQLLD 58 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 34444444445555555555677777777777775 34555566666655543
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.71 E-value=46 Score=28.28 Aligned_cols=13 Identities=15% Similarity=-0.054 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q psy5720 60 MERVKALETALKE 72 (153)
Q Consensus 60 ~ERIk~LE~aLke 72 (153)
.++.+.+|..++.
T Consensus 515 ~~~~~~~~~~~~~ 527 (597)
T 3oja_B 515 KERQAFKLRETQA 527 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhhhhHHHHHH
Confidence 3344444443333
No 24
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=71.63 E-value=17 Score=29.48 Aligned_cols=96 Identities=14% Similarity=0.154 Sum_probs=51.1
Q ss_pred HhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcCCC
Q psy5720 25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRG 104 (153)
Q Consensus 25 E~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~rr~ 104 (153)
|..||+=-..--.||.+|..|..+|...+..+.+--+.+.+|+.-.+..+..+.++.. .++-+++-++--
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e----~i~i~~DL~e~L------ 81 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAE----NSEVIKDLYEYL------ 81 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH----hhhHHHHHHHHc------
Confidence 3333333333346788888888888877777777777777777777766665554433 344444444433
Q ss_pred CCCccccccCCCCCCCCCccCCCCCC
Q psy5720 105 PAPQIAKPIRAGQPVVPPVIRPGGVT 130 (153)
Q Consensus 105 ~~arIAKPiRgGg~~~~~~~r~~~~~ 130 (153)
-|-+|..--+.+.+..-..+-+|-++
T Consensus 82 TGl~V~~~~ed~~~~~FDc~Qtg~nG 107 (190)
T 4emc_A 82 CNVRVHKSYEDDSGLWFDISQGTHSG 107 (190)
T ss_dssp HSEECCCCCCCSSCEEEEEEESCCC-
T ss_pred cCcEEEEEEEcCCCeEEEEEecCCCC
Confidence 14455555554444333334444333
No 25
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=70.33 E-value=9.9 Score=26.51 Aligned_cols=44 Identities=27% Similarity=0.323 Sum_probs=30.3
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRI 91 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ri 91 (153)
+|+-.|.+...-|+.+-++|..||..|.+-.+-+ +.++.|+|..
T Consensus 23 eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI----~~LqseLDKf 66 (72)
T 3nmd_A 23 DLQYALQEKIEELRQRDALIDELELELDQKDELI----QMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHh
Confidence 4555666667778999999999999987644322 3555666554
No 26
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=69.99 E-value=3.7 Score=26.70 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=26.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
.++.|.-||...++|+.-...|..+-+.|+.|+..|.-.
T Consensus 20 Kk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999998876666666666666665555433
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.22 E-value=31 Score=30.29 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=34.1
Q ss_pred HHHHHHHhhHHHHHHHHH---HHHh----------------------hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHK---QLVR----------------------DNADLRCELPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhK---QLV~----------------------dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkea 73 (153)
..+..||+.|++|+.+.. +||. ...++..++-++|..+....+.|..|+..|...
T Consensus 38 ~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~ 117 (409)
T 1m1j_C 38 GELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMN 117 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 567778888877765543 4441 112455666666666666666777777666543
No 28
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.03 E-value=28 Score=25.41 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhH---H------HHHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATM---E------RVKA-LETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~---E------RIk~-LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
++.|..--..|-.+|..|+.++..||-+|-.+. + .|-- -.+-..+|.+.+-.+-.++|+|+++.|++|+.
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444666899999999999998885411 0 0000 00112234444456778899999999998864
Q ss_pred H
Q psy5720 98 K 98 (153)
Q Consensus 98 ~ 98 (153)
.
T Consensus 94 l 94 (100)
T 1go4_E 94 M 94 (100)
T ss_dssp C
T ss_pred H
Confidence 3
No 29
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=67.79 E-value=23 Score=28.04 Aligned_cols=49 Identities=22% Similarity=0.343 Sum_probs=19.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHh-------hhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVR-------DNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~-------dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
||.-||+-|+.+...=|+-.+ +++++.+-+.-+|..++--.+++..|+.
T Consensus 7 Ki~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~ 62 (168)
T 3o0z_A 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILEN 62 (168)
T ss_dssp ---CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555545444333332222 2333333334444444444455544444
No 30
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=66.19 E-value=9.9 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 62 RVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 62 RIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
|...||.- =|.++..+.-++.||.|+|+-|
T Consensus 2 RMnQLEdK----VEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXK----LEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH----HHHHHhhhhHHHHHHHHHHHHH
Confidence 44555543 3567777888999999998866
No 31
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=65.95 E-value=48 Score=26.24 Aligned_cols=21 Identities=5% Similarity=0.166 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHH
Q psy5720 53 EKRLRATMERVKALETALKEA 73 (153)
Q Consensus 53 EKrL~ar~ERIk~LE~aLkea 73 (153)
|..+..-+++|..++..+.+.
T Consensus 110 E~eile~~e~ie~~~~~l~~~ 130 (256)
T 3na7_A 110 NREIENLQNEIKRKSEKQEDL 130 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444334333333
No 32
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=65.42 E-value=46 Score=32.00 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
.++++.-|+.+|+.+...-..|-.+-..|+.++..++..|
T Consensus 862 L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 862 KDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666554443444344444444444444333
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.91 E-value=6.4 Score=27.21 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=26.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
-|++|+|.-+|+|..| ++ ....++.+++++|+.-.+|+++++.
T Consensus 21 ~klAfqE~tIeeLn~~---v~----~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 21 TRLSFQEQALTELSEA---LA----DARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3678888888888754 22 2345667777777777777777775
No 34
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.59 E-value=47 Score=25.67 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=17.6
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEA 73 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkea 73 (153)
+-.+|.++|-|+.+--.+|..||..|+.+
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v 54 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666655543
No 35
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=64.51 E-value=6.8 Score=24.04 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 61 ERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 61 ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
||...||.-+ |.++..+.-++.||.|+|+-|-
T Consensus 1 eRMnQLEdKv----EeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 1 XRMKQIEDKL----EEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp --CHHHHHHH----HHHHHHHHHHHHHHHHHHHHC-
T ss_pred CchhHHHHHH----HHHHHccHHHHHHHHHHHHHhc
Confidence 3455555533 5577778888999999887653
No 36
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.13 E-value=14 Score=25.29 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=16.0
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
++||..++.++..--.+|..|+..|.+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445556666666666666666666643
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=64.00 E-value=24 Score=28.26 Aligned_cols=42 Identities=31% Similarity=0.467 Sum_probs=15.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy5720 50 PKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIK 92 (153)
Q Consensus 50 ~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riK 92 (153)
.-+|.+|..-.||+--||+-|.+ ++.+.-..+|+-.|+.-+|
T Consensus 133 eD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~rDLk 174 (189)
T 2v71_A 133 EDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEARDLR 174 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556665554 4444333334433333333
No 38
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=63.71 E-value=34 Score=24.41 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=37.7
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
...-|-+..-|||-+..+.|..+=...+.+|..+|+.+..--.+|+.|+.
T Consensus 30 Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 30 EERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34456788889999888888777777778888888877766677777664
No 39
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.68 E-value=53 Score=25.98 Aligned_cols=7 Identities=14% Similarity=0.140 Sum_probs=2.8
Q ss_pred ccccCCC
Q psy5720 110 AKPIRAG 116 (153)
Q Consensus 110 AKPiRgG 116 (153)
+=||++|
T Consensus 193 vv~v~~~ 199 (256)
T 3na7_A 193 IVTIKKQ 199 (256)
T ss_dssp EEECBTT
T ss_pred EEEeeCC
Confidence 3344433
No 40
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=62.59 E-value=9.4 Score=25.26 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=18.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcc
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCE 48 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~E 48 (153)
++.|.-||..+++|+.-...|..+.+.|+.+
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888888875444444444444433
No 41
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=62.28 E-value=6.3 Score=34.19 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=13.2
Q ss_pred HhhhHHHHHHHHHHHHHH
Q psy5720 79 KDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 79 k~~~ryq~Ev~riKe~l~ 96 (153)
..|+++..+|..+|+.++
T Consensus 45 ~~rr~l~n~~~~l~gnIr 62 (412)
T 3u06_A 45 MERKELHNTVMDLRDNIR 62 (412)
T ss_dssp HHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHHHhCCCEE
Confidence 377888888888876543
No 42
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.02 E-value=35 Score=28.55 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=5.7
Q ss_pred hhhHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKE 93 (153)
Q Consensus 80 ~~~ryq~Ev~riKe 93 (153)
+-+.++.+++.+++
T Consensus 436 ~~~~~~~~~~~~~~ 449 (487)
T 3oja_A 436 DWDMYQHKETQLAE 449 (487)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHH
Confidence 33444444444433
No 43
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=61.17 E-value=41 Score=23.79 Aligned_cols=66 Identities=12% Similarity=0.228 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 28 LEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
||+|..--.++|.--+.|+-|+..|+.+-.+-++-+. .++...+.+..++.++++|...+.++++.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~----e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ----NAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667666677777777777777776655433222111 23344556777888888998888888864
No 44
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=59.49 E-value=20 Score=23.46 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
++++..|+...++|+ .+|.+|+.++..|+
T Consensus 22 k~~~~~le~~~~~L~-------~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 22 RAEQEALTGECKELE-------KKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 445667777776666 45555555554444
No 45
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=59.07 E-value=22 Score=23.07 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=13.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPK 51 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~k 51 (153)
+.+.-||...++|+ .+|..|+.++..
T Consensus 23 ~~~~~Le~~v~~L~-------~~n~~L~~ei~~ 48 (63)
T 2wt7_A 23 ELTDTLQAETDQLE-------DEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 34555555555554 556666655543
No 46
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=58.63 E-value=7.6 Score=23.83 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=22.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
+|.-||.+.|+ |+..|.+|..||.++...|
T Consensus 2 RMnQLEdKVEe-------Ll~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 2 RMXQIEXKLEX-------ILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHH
Confidence 56677777765 4578889999988887665
No 47
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=58.51 E-value=58 Score=27.66 Aligned_cols=26 Identities=23% Similarity=0.103 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhhhhcchHHHHHH
Q psy5720 30 QLTKVHKQLVRDNADLRCELPKLEKR 55 (153)
Q Consensus 30 QLT~VhKQLV~dNa~Lk~El~klEKr 55 (153)
+|..+.+++-.+++.+..++...++.
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~ 531 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTE 531 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHh
Confidence 33344444444444444444333333
No 48
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.46 E-value=23 Score=30.39 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=11.5
Q ss_pred hhhhhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 40 RDNADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 40 ~dNa~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
++..++++++..++.+|......-+.|-..|
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~ 54 (403)
T 4etp_A 24 EKIKDTELGMKELNEILIKEETVRRTLHNEL 54 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 49
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=57.13 E-value=22 Score=30.26 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=35.2
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKE 93 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe 93 (153)
.+.+|..|+.++|..|....+.|+.|+..|...+.++.. ++++|..+.+
T Consensus 6 ~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~----l~~~i~~l~~ 54 (323)
T 1lwu_C 6 TVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTR----LQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 456778888899999999999999999998876654432 3444444443
No 50
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=56.78 E-value=52 Score=23.63 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=53.4
Q ss_pred HHHHHhhHHHHHHHHHHHH--hhhhhhhcchH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLV--RDNADLRCELP-KLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV--~dNa~Lk~El~-klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
|.=+..|+-+|-+--.||= +|+..||+-|. .+.-+-..-..+|..|.++ -.+|+++.|-...-.+++++.-.+..
T Consensus 12 i~t~s~niq~l~k~~~qlGTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l--~qkeRL~~dF~~l~~~fQ~~qr~y~e 89 (97)
T 1hs7_A 12 IETFAEQSRVLEKECTKIGSKRDSKELRYKIETELIPNCTSVRDKIESNILI--HQNGKLSADFKNLKTKYQSLQQSYNQ 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHH--HHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667766666665 89999999998 7777777777777777776 35777777777777677666655544
Q ss_pred H
Q psy5720 98 K 98 (153)
Q Consensus 98 ~ 98 (153)
+
T Consensus 90 k 90 (97)
T 1hs7_A 90 R 90 (97)
T ss_dssp H
T ss_pred H
Confidence 4
No 51
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=56.22 E-value=67 Score=24.78 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=12.5
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETAL 70 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aL 70 (153)
+.|-+++..+|-.|.+.-+..+.+..-|
T Consensus 101 ~kLEk~id~lEd~L~~~Kek~~~i~~eL 128 (155)
T 2efr_A 101 TKLEKSIDDLEDELYAQKLKYKAISEEM 128 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443333
No 52
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=55.87 E-value=8.9 Score=23.79 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ 57 (153)
+|.-||...|+ |...|.+|..||.+|...|-
T Consensus 2 RMnQLE~KVEe-------Ll~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 2 KVKQLKAKVEE-------LKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp CHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH-------HHHHhHHHHHHHHHHHHHhc
Confidence 45666666555 45677888888877766553
No 53
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.62 E-value=46 Score=21.49 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy5720 52 LEKRLRATMERVKALETALKEAKEGAM 78 (153)
Q Consensus 52 lEKrL~ar~ERIk~LE~aLkeakE~~~ 78 (153)
+.+.+..-..|-..|..+|++|.+.+.
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~ 40 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLL 40 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555678889999987443
No 54
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=51.13 E-value=29 Score=23.68 Aligned_cols=42 Identities=24% Similarity=0.351 Sum_probs=26.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 51 KLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
.+-+-|..+-+||..||..|.+.++-+ ..++.+++++...+.
T Consensus 15 ~~~~~i~~Kde~I~eLE~~L~~kd~eI----~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEKRLSEKEEEI----QELKRKLHKCQSVLP 56 (67)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHC----
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcc
Confidence 344567889999999999998887633 344455665555554
No 55
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=50.44 E-value=36 Score=22.65 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred HHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
|||+|=.+||.|-.-+-+-|.--.-++..||+---+-|
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mK 44 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMK 44 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHH
Confidence 77777778888777777777777778888887443333
No 56
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=50.17 E-value=30 Score=22.42 Aligned_cols=19 Identities=11% Similarity=0.176 Sum_probs=9.7
Q ss_pred HHHhhhHHHHHHHHHHHHH
Q psy5720 77 AMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 77 ~~k~~~ryq~Ev~riKe~l 95 (153)
+..+|..+..+|+.+++.+
T Consensus 35 L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 35 LEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 57
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=49.53 E-value=43 Score=21.62 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 59 TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 59 r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
-...|..||..|..++..+.+..+-||. +=-||-+|.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~-LlniK~~Le 41 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGD-LLNVKMALD 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhH
Confidence 3566788999999999888888877753 444555543
No 58
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=47.84 E-value=28 Score=30.14 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=13.3
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|..||..+..++..-.+.|+.+...+++.++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~ 38 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKE 38 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444
No 59
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=47.80 E-value=21 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=20.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhh
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDN 42 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dN 42 (153)
++..-++++||+|+....|++..+
T Consensus 24 ~qV~~md~KLd~l~~~~~~~l~~~ 47 (49)
T 3bj4_A 24 DKVTQLDQRLALITDMLHQLLSLH 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999999999988644
No 60
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.95 E-value=57 Score=23.02 Aligned_cols=22 Identities=27% Similarity=0.463 Sum_probs=10.3
Q ss_pred HHHHhhhhhhhcchHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ 57 (153)
..|.++|..|+.|..--+.||+
T Consensus 51 ~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 51 EELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555444444443
No 61
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=46.52 E-value=16 Score=22.43 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
|+|.-||.++|+|- ..|.+|-.||.++.+.|
T Consensus 1 ~RMnQledKvEel~-------~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 1 MKLKQVADKLEEVA-------SKLYHNANELARVAKLL 31 (34)
T ss_dssp -CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH-------HHhHHHHHHHHHHHHHh
Confidence 45667777777654 56777777777776655
No 62
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=46.49 E-value=50 Score=36.11 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=30.0
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAKEGAMK----------DRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k----------~~~ryq~Ev~riKe~l~ 96 (153)
+|.+|..+|..|....+....++..|++.++++.. +..+++.|++....+|.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666555554433 44555555555555543
No 63
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.23 E-value=12 Score=22.85 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=12.2
Q ss_pred HHHhhhhhhhcchHHHHHHH
Q psy5720 37 QLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 37 QLV~dNa~Lk~El~klEKrL 56 (153)
.|+..|.+|..||.+|...|
T Consensus 11 eLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 11 ELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHh
Confidence 34566677776666665544
No 64
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=46.07 E-value=70 Score=22.02 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 60 MERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 60 ~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
-++|..||..|.+++. .+.+++.|+.++-+.|.
T Consensus 20 e~~v~~le~~Le~s~~----~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 20 EGQLSEMEQRLEKSQS----EQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 4566666666666664 34455555555555443
No 65
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.50 E-value=23 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=18.5
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
|.-||.+.|+|+ ..|.+|..||.++...|
T Consensus 2 MnQLEdKVEell-------~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 2 MKQLEDKIEENT-------SKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHH-------HhhHHHHHHHHHHHHHh
Confidence 555666666655 56677777777666544
No 66
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=44.34 E-value=80 Score=22.17 Aligned_cols=64 Identities=20% Similarity=0.285 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhhHH-------HHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLD-------QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 16 aQkQKiaFLE~NLE-------QLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
+=|.||.-|....| ++-.--|++-..+..+-.|+.-|.+|+...-+=+..++..|.+++..+--
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777754443 33333355556666667777777777766666666666666666655544
No 67
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=44.30 E-value=67 Score=25.97 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=21.9
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+.|-.|+..|.-.|.++...|++|..-|...++..
T Consensus 23 ~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 23 ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45566666666666666666666666666555544
No 68
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=43.15 E-value=51 Score=20.01 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 74 KEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 74 kE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
=|.++..+.-++.||.|+|+-|-
T Consensus 9 vEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 9 LXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHc
Confidence 35677777889999999988663
No 69
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=42.95 E-value=1.1e+02 Score=23.17 Aligned_cols=37 Identities=30% Similarity=0.421 Sum_probs=29.9
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy5720 49 LPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQ 85 (153)
Q Consensus 49 l~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq 85 (153)
...+|.|-..-.|||..||.-|++|+.-+----++|.
T Consensus 40 ~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKye 76 (147)
T 2b9c_A 40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 76 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3457889999999999999999999976666555554
No 70
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=42.84 E-value=1.8e+02 Score=32.03 Aligned_cols=49 Identities=10% Similarity=0.273 Sum_probs=24.2
Q ss_pred hhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHH
Q psy5720 45 LRCELPKLEKRLRATMERVKALETALKEAKEGAMK----------DRKRYQYEVDRIKE 93 (153)
Q Consensus 45 Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k----------~~~ryq~Ev~riKe 93 (153)
|...|..++..+.......+.||.-+..++.++.+ ++.|.+++++.+++
T Consensus 2040 le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2040 LEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHH
Confidence 33344444444444444444444444444443332 56666666666655
No 71
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=42.82 E-value=32 Score=22.03 Aligned_cols=28 Identities=32% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
+-+.-||..+++|. .+|..|+.++..|.
T Consensus 22 ~~~~~LE~~v~~L~-------~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLE-------NQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 34666666666555 45555555555443
No 72
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.61 E-value=42 Score=23.43 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=26.5
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLke 72 (153)
.|+.-||++||.|..-=..|.-+.. ....+|.. ||-.||.-++.
T Consensus 7 EKv~~LE~sld~LQTrfARLLaEy~-------ssQ~KLKq---Rit~LE~~~~~ 50 (74)
T 3swf_A 7 EKVTRMESSVDLLQTRFARILAEYE-------SMQQKLKQ---RLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH---HHHHHHHHhcc
Confidence 4778899999998765555554432 23444443 44556665554
No 73
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=41.97 E-value=79 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 63 VKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 63 Ik~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
..+||..|.++......+...|+..|..+...+.+
T Consensus 10 ~~sLE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~ 44 (84)
T 1gk4_A 10 NESLERQMREMEENFAVEAANYQDTIGRLQDEIQN 44 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777776666666666666655555543
No 74
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=40.94 E-value=2e+02 Score=25.74 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=8.5
Q ss_pred HHHHHhhHHHHH
Q psy5720 21 ISFLENNLDQLT 32 (153)
Q Consensus 21 iaFLE~NLEQLT 32 (153)
+.-|+++|++|+
T Consensus 102 LqeLe~~l~~ls 113 (464)
T 1m1j_B 102 LRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 677777777764
No 75
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=40.70 E-value=58 Score=19.88 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 72 EAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 72 eakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+.=|.++..+.-++.||.|+++.|-
T Consensus 8 dkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 8 DAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3446677788889999999988763
No 76
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.55 E-value=60 Score=30.15 Aligned_cols=36 Identities=14% Similarity=0.357 Sum_probs=27.8
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
+|+.-+.-|+.++..-..+|+.|+..|.+-...+.+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQR 149 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKR 149 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777888888888888888888888776655543
No 77
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=40.26 E-value=1.4e+02 Score=23.96 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=25.7
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
-...++|..|.+|+.-.|++.....|=-+.|..
T Consensus 125 f~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy 157 (214)
T 2cly_A 125 FDVQRNNIAMALEVTYRERLHRVYREVKNRLDY 157 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344689999999999999999888885555544
No 78
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=40.02 E-value=1.4e+02 Score=23.58 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHhhhhhhhcchHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHH
Q psy5720 26 NNLDQLTKVHKQLVRDNADLRCELPK-------LEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVD 89 (153)
Q Consensus 26 ~NLEQLT~VhKQLV~dNa~Lk~El~k-------lEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~ 89 (153)
-.+..|.+-.-.|=.+++.|...|.. .+-...-...||.+|+.-|+..+++..+ +++.++..|-
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~ 128 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLN 128 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444555555555555532 2222223344778888877777776655 6666554443
No 79
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=39.82 E-value=1.1e+02 Score=22.70 Aligned_cols=6 Identities=50% Similarity=0.634 Sum_probs=2.1
Q ss_pred HHHHHH
Q psy5720 70 LKEAKE 75 (153)
Q Consensus 70 LkeakE 75 (153)
+.+|++
T Consensus 30 ~~eA~~ 35 (187)
T 3v6i_A 30 KREAEE 35 (187)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 80
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=39.79 E-value=61 Score=19.78 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 62 RVKALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 62 RIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
|...||. -=|.++..+.-++.||.|+|+-|
T Consensus 2 RMnQLE~----kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 2 RMXQLEX----KVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp CHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH----HHHHHHHhhhhHHHHHHHHHHHH
Confidence 4444554 33567778888899999988765
No 81
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=38.64 E-value=1e+02 Score=21.74 Aligned_cols=11 Identities=9% Similarity=0.265 Sum_probs=4.9
Q ss_pred HHHHhhHHHHH
Q psy5720 22 SFLENNLDQLT 32 (153)
Q Consensus 22 aFLE~NLEQLT 32 (153)
.||+++++.|+
T Consensus 91 ~~l~~r~~~l~ 101 (133)
T 1fxk_C 91 ESIKSQKNELE 101 (133)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 82
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=37.97 E-value=80 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.058 Sum_probs=7.8
Q ss_pred HHhhh--hhhhcchHHHHHHHHHhH
Q psy5720 38 LVRDN--ADLRCELPKLEKRLRATM 60 (153)
Q Consensus 38 LV~dN--a~Lk~El~klEKrL~ar~ 60 (153)
-.++| +.|++....||+.|....
T Consensus 8 ~~~~~~~~~Lq~~~~~LE~~l~e~E 32 (95)
T 3mov_A 8 SSRENLYFQGQKESRACLERIQELE 32 (95)
T ss_dssp ----------CCCCHHHHHHHHHHH
T ss_pred ccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34555 566666555555444433
No 83
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=37.55 E-value=1.2e+02 Score=22.07 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhh---hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHh
Q psy5720 29 DQLTKVHKQLVRDN---ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEVDRIKEAVRQKN 99 (153)
Q Consensus 29 EQLT~VhKQLV~dN---a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev~riKe~l~~~n 99 (153)
.+|+...+.|+.-+ ..||-++.+.+. ..|+|.-|++-...=++-+.. +|.|.+.|.+.+.+.++...
T Consensus 9 ~~L~~aEeaL~~kq~~id~lke~~~q~~~----~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq 81 (94)
T 3jsv_C 9 QQLQQAEEALVAKQELIDKLKEEAEQHKI----VMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 81 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555555322 456666665544 449999999877777766665 78888888888888776553
No 84
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=36.88 E-value=37 Score=23.42 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=4.2
Q ss_pred HHhhhhhhhcc
Q psy5720 38 LVRDNADLRCE 48 (153)
Q Consensus 38 LV~dNa~Lk~E 48 (153)
|-.+|..|+.+
T Consensus 71 L~~~n~~L~~r 81 (88)
T 1nkp_A 71 LRKRREQLKHK 81 (88)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 85
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=36.60 E-value=1.2e+02 Score=21.83 Aligned_cols=47 Identities=13% Similarity=0.297 Sum_probs=29.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 52 LEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 52 lEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.|.++.+-.-=+..+-.++-+-...-.+=+..|+.||.++|-.|.++
T Consensus 41 yE~ki~~Qi~Emq~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 41 YDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44444444443444444555544455666789999999999988754
No 86
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=36.32 E-value=29 Score=22.27 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHH
Q psy5720 80 DRKRYQYEVDRIKEA 94 (153)
Q Consensus 80 ~~~ryq~Ev~riKe~ 94 (153)
+|..+..+++.+++.
T Consensus 37 eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 37 QNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555566555543
No 87
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=35.81 E-value=1.4e+02 Score=22.50 Aligned_cols=77 Identities=16% Similarity=0.215 Sum_probs=43.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhh-------hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hhhHHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNA-------DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK---DRKRYQYEV 88 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa-------~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k---~~~ryq~Ev 88 (153)
.||..||..|...+..-..--+... .+-.+|.++|-|+.+--.+|..||.-|+..-.++-. .-.+|.+.-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eekas~rE 131 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEELLSKN 131 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHH
Confidence 4777888888777655443333332 344455666666666666777777766655444322 333444444
Q ss_pred HHHHHHH
Q psy5720 89 DRIKEAV 95 (153)
Q Consensus 89 ~riKe~l 95 (153)
+.+.+.+
T Consensus 132 ~~yee~I 138 (147)
T 2b9c_A 132 YHLENEV 138 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 88
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.61 E-value=1.5e+02 Score=22.93 Aligned_cols=72 Identities=10% Similarity=0.196 Sum_probs=39.9
Q ss_pred CHHHHHHHHHH-HhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy5720 14 SLAQRQKISFL-ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD 89 (153)
Q Consensus 14 s~aQkQKiaFL-E~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~ 89 (153)
+..||++|.=| +..-.+...+..||.....+|...+.. ++ .-.+.|.+|-..+.+.+..+...|-+|+.|+.
T Consensus 69 T~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a-~~---~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~ 141 (175)
T 3lay_A 69 TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTA-SS---PDTAKINAVAKEMESLGQKLDEQRVKRDVAMA 141 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SS---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888766 444555555555555444444433210 00 11245666666666666666666666666654
No 89
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.51 E-value=78 Score=21.66 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy5720 65 ALETALKEAKEGAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 65 ~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l 95 (153)
+||..|.++......+...|+..|..+...+
T Consensus 14 ~Le~~l~e~E~~~~~~l~~~q~~i~~lE~el 44 (86)
T 1x8y_A 14 AKEAKLRDLEDSLARERDTSRRLLAEKEREM 44 (86)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554444443
No 90
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=35.47 E-value=85 Score=21.21 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHhhhHHHHHHHHHHHHH
Q psy5720 60 MERVKALETALKEAKE---GAMKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 60 ~ERIk~LE~aLkeakE---~~~k~~~ryq~Ev~riKe~l 95 (153)
.++|+.||.-+.+-.. .+..++..+..+|+.+...+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777766554432 23445555555555554443
No 91
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=35.08 E-value=23 Score=28.59 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhcchHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL 56 (153)
..|..+|..||.|+..++.++
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~ 42 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLE 42 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 346689999999988776544
No 92
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=34.73 E-value=57 Score=20.77 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=17.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhh
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDN 42 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dN 42 (153)
.|+.-||++||.|..-=..|.-+.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~ 28 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEY 28 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477789999999976555555443
No 93
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=34.72 E-value=74 Score=22.39 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=14.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
+++..-++...++|+ .+|..|+.+|..|+
T Consensus 35 k~r~~e~~~r~~~Le-------~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 35 KMRNLETQHKVLELT-------AENERLQKKVEQLS 63 (87)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 344444555555555 45555555544443
No 94
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=34.68 E-value=1.7e+02 Score=23.22 Aligned_cols=62 Identities=26% Similarity=0.221 Sum_probs=37.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHhhh--hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVRDN--ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~dN--a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
++||.-|-.-||.=|...+-+.--+ +-|+-.+..+|.+.....++|..=..+|..+++.+..
T Consensus 54 ~~k~~qlre~~d~gtt~~~i~~m~~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~q 117 (169)
T 3k29_A 54 MQKIRQLREQLDDGTTSDAILKMKAYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTK 117 (169)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777776665555444333 4455566666666666666666666666666655444
No 95
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.99 E-value=1.3e+02 Score=21.73 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=15.9
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEG 76 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~ 76 (153)
..|+|..+.+..++..-.+.++.||..+...+..
T Consensus 21 ~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 21 SILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444455555544444443
No 96
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=33.90 E-value=1.4e+02 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=15.6
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
+..|-..||.+.-..-||-++|-+..+|+..+.
T Consensus 32 VdlLKD~LEe~eE~~aql~Re~~eK~re~e~~K 64 (103)
T 4h22_A 32 VDTLKDMLLELEEQLAESRRQYEEKNKEFEREK 64 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444455455444444444333
No 97
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=33.44 E-value=1.2e+02 Score=21.09 Aligned_cols=57 Identities=26% Similarity=0.403 Sum_probs=32.2
Q ss_pred HHHHhhhhhhhcchHHHHHHHHHhHHHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHH
Q psy5720 36 KQLVRDNADLRCELPKLEKRLRATMERVKAL-ETALKEAKEGA---MKDRKRYQYEVDRIKEAV 95 (153)
Q Consensus 36 KQLV~dNa~Lk~El~klEKrL~ar~ERIk~L-E~aLkeakE~~---~k~~~ryq~Ev~riKe~l 95 (153)
+.|=.+|..|..++..+..+=. .++..+ |..|.+.+..+ ..++.+++.|++.+.+.+
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~~---~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~ 86 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQGK---SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 86 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777755554322 234443 55555555433 346667766666665544
No 98
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=32.89 E-value=25 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=11.0
Q ss_pred HHhhhhhhhcchHHHHHHH
Q psy5720 38 LVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 38 LV~dNa~Lk~El~klEKrL 56 (153)
|+..|.+|..||.++...|
T Consensus 13 Ll~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 13 ILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHH
Confidence 4455666666666655544
No 99
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=32.78 E-value=49 Score=21.70 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=21.2
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALET 68 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~ 68 (153)
-+-|+.+..+|+.|+-...-|+.||.
T Consensus 10 v~~Rkk~eeler~lrk~kk~iKklEd 35 (50)
T 1a92_A 10 VSGRKKLEELERDLRKLKKKIKKLEE 35 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34577788899999999999998885
No 100
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.78 E-value=94 Score=22.92 Aligned_cols=54 Identities=13% Similarity=0.281 Sum_probs=40.4
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
.|=..||-.+.==..-.+||+.||.-++++.+.+..--+.-+..+..|.+.++.
T Consensus 75 ~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~ 128 (132)
T 1ykh_B 75 KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIED 128 (132)
T ss_dssp HHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455655555556778999999999999888887777777778888777764
No 101
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.38 E-value=1e+02 Score=23.39 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=43.9
Q ss_pred hhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q psy5720 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 44 ~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~ 100 (153)
.|=..||-.+.==..-.+||+.||.-++++.+.+..--+.-+..+..|.+.++....
T Consensus 75 ~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 75 KLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455655555556788999999999999998888888888888888888876543
No 102
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=32.02 E-value=43 Score=22.59 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhh
Q psy5720 15 LAQRQKISFLENNLDQLTKVHKQLVRD 41 (153)
Q Consensus 15 ~aQkQKiaFLE~NLEQLT~VhKQLV~d 41 (153)
..=.+|+.+|+.|-+=. +.|++||-.
T Consensus 14 ~ELe~k~rlL~eN~~L~-qLyk~LV~s 39 (61)
T 2dii_A 14 KELEEKNRMLQEDPVLF-QLYKDLVVS 39 (61)
T ss_dssp HHHHHHHHHHHHCHHHH-HHHHHHHTT
T ss_pred HhHHHHHHHHHhCHHHH-HHHHHHHHh
Confidence 45678899999987644 899999974
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=31.44 E-value=2.3e+02 Score=23.61 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=6.2
Q ss_pred HhhhHHHHHHHHHHH
Q psy5720 79 KDRKRYQYEVDRIKE 93 (153)
Q Consensus 79 k~~~ryq~Ev~riKe 93 (153)
+++.+++.+++.+..
T Consensus 449 ~~~~~~~~~~~~~~~ 463 (487)
T 3oja_A 449 EENARLKKLNGEADL 463 (487)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhhhh
Confidence 344444444444333
No 104
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=30.86 E-value=1.3e+02 Score=21.16 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=29.1
Q ss_pred HHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 38 LVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 38 LV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
+|.+|..|+.-+..|.+-|...-.+|..|+..++-..
T Consensus 9 ~~~~~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~ 45 (75)
T 3a7o_A 9 IVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKN 45 (75)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778888888888999999999999999998876543
No 105
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=30.83 E-value=40 Score=23.85 Aligned_cols=12 Identities=17% Similarity=0.249 Sum_probs=4.6
Q ss_pred HHHHHHHHHhHH
Q psy5720 50 PKLEKRLRATME 61 (153)
Q Consensus 50 ~klEKrL~ar~E 61 (153)
..+..=|.++.+
T Consensus 29 nvvk~DLI~rvd 40 (77)
T 2w83_C 29 NIVKNDLIAKVD 40 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333444333
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=30.25 E-value=83 Score=22.44 Aligned_cols=32 Identities=28% Similarity=0.269 Sum_probs=14.0
Q ss_pred HHHHhhHHHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 22 SFLENNLDQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 22 aFLE~NLEQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
..||....+|..--.+|..+|+.+.+|+..+.
T Consensus 51 ~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k 82 (90)
T 2wt7_B 51 HHLENEKTQLIQQVEQLKQEVSRLARERDAYK 82 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444333
No 107
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=30.15 E-value=31 Score=23.05 Aligned_cols=9 Identities=11% Similarity=0.335 Sum_probs=3.7
Q ss_pred HHHHHHhhH
Q psy5720 20 KISFLENNL 28 (153)
Q Consensus 20 KiaFLE~NL 28 (153)
|.+.|..-.
T Consensus 38 K~~iL~~Ai 46 (83)
T 1nkp_B 38 RAQILDKAT 46 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444333
No 108
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=29.64 E-value=1.7e+02 Score=23.79 Aligned_cols=51 Identities=14% Similarity=0.177 Sum_probs=39.8
Q ss_pred HHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhH
Q psy5720 33 KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83 (153)
Q Consensus 33 ~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~r 83 (153)
.+.+.|..--+.+|.++..++.+|..+.+=+.++-+-|.+....+..-|.-
T Consensus 164 ~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~ 214 (228)
T 3q0x_A 164 VVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQ 214 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777788899999999999988888888888888877766654433
No 109
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=29.39 E-value=3.5e+02 Score=25.17 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=33.1
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
+-+..|...++..|.+.-.=-..+|.+|...+.+ ..+.++-+.|.+.||+++.
T Consensus 380 Sa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K-iAE~KrK~dE~~aIKDAVk 432 (602)
T 1cii_A 380 SARTNEQKHANDALNALLKEKENIRNQLSGINQK-IAEEKRKQDELKATKDAIN 432 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH-HHHHHHhhhHHHHHHHHHH
Confidence 3344445556666655444444567777777666 4455566778899999874
No 110
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.35 E-value=1.7e+02 Score=21.55 Aligned_cols=55 Identities=22% Similarity=0.463 Sum_probs=30.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH---hhhhhhhcchHHHHHHHHHhH----HHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLV---RDNADLRCELPKLEKRLRATM----ERVKALETALKE 72 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV---~dNa~Lk~El~klEKrL~ar~----ERIk~LE~aLke 72 (153)
+.-|.-|..++++|.+.|.+++ .+...++.+|..+-.-....+ .+|+.|+....+
T Consensus 49 ~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~ 110 (180)
T 1s94_A 49 RAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQ 110 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888888855 334556666654443333333 355666655443
No 111
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.77 E-value=1.8e+02 Score=21.61 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=39.8
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLA 101 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~n~~ 101 (153)
.+|+-.|.-+|+-|.....-|..|...+.. ++..+-.-.=+++|++-+++-+..-.+.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q-~~~~lE~I~vLkaQv~IY~~DF~aERad 84 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQ-HKIVMETVPVLKAQADIYKADFQAERHA 84 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHccchhh
Confidence 467777788888888888888888876655 3333334556777888888776544443
No 112
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.63 E-value=64 Score=20.11 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=18.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLV 39 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV 39 (153)
|.-|+-|++.|++|..-.+||-
T Consensus 14 keQi~~l~~kl~~LkeEKHQLF 35 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLF 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5568889999999999988885
No 113
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=28.19 E-value=2.1e+02 Score=22.31 Aligned_cols=15 Identities=27% Similarity=0.332 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhHHHH
Q psy5720 17 QRQKISFLENNLDQL 31 (153)
Q Consensus 17 QkQKiaFLE~NLEQL 31 (153)
.+..+.-++.+|+++
T Consensus 67 ~~~~~~~~~a~l~~~ 81 (341)
T 3fpp_A 67 AENQIKEVEATLMEL 81 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 114
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=28.14 E-value=2.7e+02 Score=29.94 Aligned_cols=70 Identities=23% Similarity=0.321 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHH
Q psy5720 29 DQLTKVHKQLVRDNADLRCELPKLEKRLRATM-----------ERVKALETALKEAKEGAMK--DRKRYQYEVDRIKEAV 95 (153)
Q Consensus 29 EQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~-----------ERIk~LE~aLkeakE~~~k--~~~ryq~Ev~riKe~l 95 (153)
-+|..-.-+|+.++++.|..|..+|.+|..+- +=|..||++=..|.|=..+ +-+..+.+|+..++.+
T Consensus 2142 PdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~~Y 2221 (2695)
T 4akg_A 2142 AEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEY 2221 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555567899999999999999999876643 4577888877777653333 6677889999999988
Q ss_pred HHH
Q psy5720 96 RQK 98 (153)
Q Consensus 96 ~~~ 98 (153)
+..
T Consensus 2222 rpv 2224 (2695)
T 4akg_A 2222 SII 2224 (2695)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 115
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=28.06 E-value=1.5e+02 Score=21.28 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=37.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhh
Q psy5720 53 EKRLRATMERVKALETALKEAKEGAMK-DRKRYQYEVDRIKEAVRQKNL 100 (153)
Q Consensus 53 EKrL~ar~ERIk~LE~aLkeakE~~~k-~~~ryq~Ev~riKe~l~~~n~ 100 (153)
-..|-.-..+|..|+..|.+|---+-- |-+.|+..|..+++.+.....
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666678899999999888754433 889999999999998876643
No 116
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.95 E-value=2.3e+02 Score=25.16 Aligned_cols=58 Identities=21% Similarity=0.350 Sum_probs=39.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH-----------------hh--------hhhhhcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 17 QRQKISFLENNLDQLTKVHKQLV-----------------RD--------NADLRCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 17 QkQKiaFLE~NLEQLT~VhKQLV-----------------~d--------Na~Lk~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
=+.+|.-|-++|+.|..-|+... .| +.+|+.-+.-+.+++.....+|+.|+.-|+
T Consensus 65 ~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~ 144 (390)
T 1deq_A 65 FTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVR 144 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35678888888888866555211 11 237777778888888888888888877755
Q ss_pred HHH
Q psy5720 72 EAK 74 (153)
Q Consensus 72 eak 74 (153)
+-.
T Consensus 145 ~q~ 147 (390)
T 1deq_A 145 DQL 147 (390)
T ss_pred HHH
Confidence 443
No 117
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=27.82 E-value=95 Score=21.17 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred hhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQK 98 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~~ 98 (153)
.+|-.-+..||-||.--..-|..|=..+-+-+. +=.+++.++..+.+++...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~----~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARL----TGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHh
Confidence 444455566666666666666666665554443 2345566666666666543
No 118
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=27.47 E-value=1.1e+02 Score=22.86 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.8
Q ss_pred HHHHhhHHHHHHH
Q psy5720 22 SFLENNLDQLTKV 34 (153)
Q Consensus 22 aFLE~NLEQLT~V 34 (153)
.-|+..|++|..|
T Consensus 12 ~~L~~EL~~L~~~ 24 (158)
T 2p4v_A 12 EKLKQELNYLWRE 24 (158)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 3455556665444
No 119
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=25.88 E-value=1.7e+02 Score=20.27 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhHH-------HHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy5720 16 AQRQKISFLENNLD-------QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79 (153)
Q Consensus 16 aQkQKiaFLE~NLE-------QLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k 79 (153)
+=+.||.-|....| ++-.--|++-..+..+-.|+.-+.+++...-+=+..++..|.+++..+-.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~ 76 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777644333 33333344445555566666666666665555555555666666554443
No 120
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=25.70 E-value=1.2e+02 Score=22.64 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=8.4
Q ss_pred HHHHhhHHHHHHHHH
Q psy5720 22 SFLENNLDQLTKVHK 36 (153)
Q Consensus 22 aFLE~NLEQLT~VhK 36 (153)
.-|+..|++|..|.+
T Consensus 12 ~~L~~El~~L~~~~r 26 (158)
T 1grj_A 12 EKLREELDFLKSVRR 26 (158)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhccc
Confidence 345666666665543
No 121
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=25.66 E-value=2.5e+02 Score=24.38 Aligned_cols=8 Identities=25% Similarity=0.684 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy5720 88 VDRIKEAV 95 (153)
Q Consensus 88 v~riKe~l 95 (153)
+..+.+.+
T Consensus 92 ~~~~~~~~ 99 (455)
T 2dq0_A 92 VEELKKKI 99 (455)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 122
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=25.62 E-value=89 Score=21.51 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=14.9
Q ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHH
Q psy5720 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEK 54 (153)
Q Consensus 19 QKiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEK 54 (153)
++..-++...++|+ .+|..|+.+|..|++
T Consensus 36 ~r~~e~~~r~~~L~-------~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 36 MRNLETQHKVLELT-------AENERLQKKVEQLSR 64 (78)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44444454444444 556666655555443
No 123
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=25.56 E-value=1.5e+02 Score=21.54 Aligned_cols=15 Identities=13% Similarity=0.220 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHHH
Q psy5720 59 TMERVKALETALKEA 73 (153)
Q Consensus 59 r~ERIk~LE~aLkea 73 (153)
-.++|..++..|.+.
T Consensus 124 l~~~i~~~~~~l~~l 138 (151)
T 2zdi_C 124 LEKRIGEVARKAQEV 138 (151)
T ss_dssp HHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
No 124
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=25.40 E-value=1.4e+02 Score=19.25 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=25.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
||.=|.+.+++|+.==-||-.|=+. |-...+.||+.+.+-+.|+
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~a---------------------l~~~v~~ak~eA~RAN~Rl 48 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANA---------------------ARSDAQAAKDDAARANQRA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHhh
Confidence 4555666666666554555444444 4445556777777766664
No 125
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=25.38 E-value=1.3e+02 Score=23.10 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy5720 27 NLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84 (153)
Q Consensus 27 NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ry 84 (153)
.+--++....++..+...|+.++.-.-.+|+.-. .++|++|+-=+..+--++++|
T Consensus 31 k~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~---esmeaalkmEr~~~~eEKrkL 85 (130)
T 3cl3_D 31 RARAASEQARQLESEREALQQQHSVQVDQLRMQG---QSVEAALRMERQAASEEKRKL 85 (130)
T ss_dssp --------------------CTTTHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445555555555555555555555443 366666665554444444443
No 126
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.32 E-value=45 Score=21.87 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHHH
Q psy5720 29 DQLTKVHKQLVRDNADLRCELPKLE 53 (153)
Q Consensus 29 EQLT~VhKQLV~dNa~Lk~El~klE 53 (153)
++|..--.+|-.+|+.|+.++..|.
T Consensus 33 ~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 33 KQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344333445555555555554443
No 127
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=25.22 E-value=1.6e+02 Score=19.91 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy5720 59 TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96 (153)
Q Consensus 59 r~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~ 96 (153)
-..-|..||..|..++..+.++.+-|| ++=-||-+|.
T Consensus 10 ~~~~i~~lE~eL~~~r~e~~~ql~EYq-~LlniKl~Le 46 (74)
T 2xv5_A 10 SRRLLAEKEREMAEMRARMQQQLDEYQ-ELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 345677888888888888888777774 3444555553
No 128
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=25.22 E-value=61 Score=24.40 Aligned_cols=43 Identities=33% Similarity=0.386 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhhhhhhcchHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Q psy5720 31 LTKVHKQLVRDNADLRCELPKLEKRLRAT---MERVKALETALKEAKEG 76 (153)
Q Consensus 31 LT~VhKQLV~dNa~Lk~El~klEKrL~ar---~ERIk~LE~aLkeakE~ 76 (153)
|..||+|+|+=--| =|.|...-|.+. -|=-.+||.+|.||+++
T Consensus 38 l~FiHHQiiElARD---CL~KSr~~LITsrYF~El~E~LEkLl~ea~er 83 (114)
T 1v9v_A 38 LGFIHHQIVELARD---CLAKSGENLVTSRYFLEMQEKLERLLQDAHER 83 (114)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---HHHHHHccchHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999862211 123333333332 34447899999998874
No 129
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=25.13 E-value=2e+02 Score=21.05 Aligned_cols=55 Identities=31% Similarity=0.405 Sum_probs=31.9
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE 75 (153)
|+-|+..|.+|...+..|...=-+|-..-.-+|+.-|++..=+..+|+-|-.|=|
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiE 91 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE 91 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666776666666555443444444445566666666666666665554444
No 130
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=24.84 E-value=2.8e+02 Score=22.47 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=23.0
Q ss_pred HhhhHHHHHHHHHHHHHHHHhhcCCCCCCccccccCCCC
Q psy5720 79 KDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQ 117 (153)
Q Consensus 79 k~~~ryq~Ev~riKe~l~~~n~~rr~~~arIAKPiRgGg 117 (153)
.-+.+++.+|++++++|.-+++ |-|-||+-..|
T Consensus 177 ~ak~~~~~~I~rL~~AL~IA~a------agI~kP~~~~~ 209 (280)
T 3b8m_A 177 KMKNQLDANIQRLNYSLDIANA------AGIKKPVYSNG 209 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HTCCSCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------cCCCCCCcccc
Confidence 3445778899999999988765 45678886543
No 131
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.80 E-value=64 Score=21.45 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=11.5
Q ss_pred HHHhHHHHHHHHHHHHH
Q psy5720 56 LRATMERVKALETALKE 72 (153)
Q Consensus 56 L~ar~ERIk~LE~aLke 72 (153)
|....+.|+.|+....+
T Consensus 42 L~~Ai~YI~~L~~~~~~ 58 (83)
T 1nkp_B 42 LDKATEYIQYMRRKNHT 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677788888765443
No 132
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.31 E-value=1.2e+02 Score=26.14 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=7.1
Q ss_pred HHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 21 ISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 21 iaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
+..|-.++.+...-...|...|.+|...+-++|+.+
T Consensus 23 ~~~l~~~l~~~~~~~~~l~~~~~dl~~~lk~le~~~ 58 (428)
T 4b4t_K 23 YASLLAQLNGTVNNNSALSNVNSDIYFKLKKLEKEY 58 (428)
T ss_dssp -------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHhhccchhhhcccccHHHHHHHHHHHHHH
Confidence 344444444444444455566777777776666543
No 133
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=24.15 E-value=1.6e+02 Score=21.65 Aligned_cols=12 Identities=8% Similarity=0.418 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q psy5720 85 QYEVDRIKEAVR 96 (153)
Q Consensus 85 q~Ev~riKe~l~ 96 (153)
+..|..+...|.
T Consensus 59 e~ri~~L~~~L~ 70 (156)
T 2f23_A 59 EARIDSLEDILS 70 (156)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444544554
No 134
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=23.86 E-value=2.2e+02 Score=25.40 Aligned_cols=14 Identities=7% Similarity=0.041 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy5720 83 RYQYEVDRIKEAVR 96 (153)
Q Consensus 83 ryq~Ev~riKe~l~ 96 (153)
.++.++..+.+.+.
T Consensus 89 ~le~~~~~~~~~~~ 102 (485)
T 3qne_A 89 EIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 135
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=23.86 E-value=72 Score=20.46 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=12.2
Q ss_pred hhhhcchHHHHHHHHHhHHHHH
Q psy5720 43 ADLRCELPKLEKRLRATMERVK 64 (153)
Q Consensus 43 a~Lk~El~klEKrL~ar~ERIk 64 (153)
+.|..|+.-+||+|.+---.++
T Consensus 23 aaleselqalekklaalksklq 44 (48)
T 1g6u_A 23 AALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666655444333
No 136
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.74 E-value=63 Score=26.95 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.2
Q ss_pred hcchHHHHHHHHHhHHHHHHHHHHHH
Q psy5720 46 RCELPKLEKRLRATMERVKALETALK 71 (153)
Q Consensus 46 k~El~klEKrL~ar~ERIk~LE~aLk 71 (153)
+.|+.-+--=|.+.-.||++||.+|+
T Consensus 211 qseiqa~an~L~~~RqrikAlEdalR 236 (242)
T 3c9i_A 211 QSEIQAIANALITERRRTKAMEDALR 236 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888999999999986
No 137
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.90 E-value=2.7e+02 Score=21.56 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhh-hhhhcchHHHHHHHHHh
Q psy5720 31 LTKVHKQLVRDN-ADLRCELPKLEKRLRAT 59 (153)
Q Consensus 31 LT~VhKQLV~dN-a~Lk~El~klEKrL~ar 59 (153)
||-=|++-+++= .+.+.+...+-..|.+.
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~ak 97 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISK 97 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455444444322 33333443333333333
No 138
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=22.60 E-value=51 Score=21.27 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=11.9
Q ss_pred HHHHHHhhHHHHHHH
Q psy5720 20 KISFLENNLDQLTKV 34 (153)
Q Consensus 20 KiaFLE~NLEQLT~V 34 (153)
.++.|+.||.+|..-
T Consensus 28 EV~~L~~NL~EL~~E 42 (48)
T 3v1a_A 28 EVRTLQENLHQLMHE 42 (48)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 567899999998753
No 139
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.23 E-value=1.8e+02 Score=19.35 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q psy5720 84 YQYEVDRIKEAV 95 (153)
Q Consensus 84 yq~Ev~riKe~l 95 (153)
++.++++..++|
T Consensus 53 lE~eld~~ee~l 64 (81)
T 1ic2_A 53 TEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 140
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=21.93 E-value=1.1e+02 Score=19.50 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=5.2
Q ss_pred hhhcchHHHHHHH
Q psy5720 44 DLRCELPKLEKRL 56 (153)
Q Consensus 44 ~Lk~El~klEKrL 56 (153)
.||.|+..|..+.
T Consensus 23 aLk~E~~eLk~k~ 35 (53)
T 2yy0_A 23 LLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444443333
No 141
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=21.93 E-value=2.9e+02 Score=21.71 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhHHH
Q psy5720 17 QRQKISFLENNLDQ 30 (153)
Q Consensus 17 QkQKiaFLE~NLEQ 30 (153)
.+..+.-++..|++
T Consensus 68 ~~~~l~~~~a~l~~ 81 (369)
T 4dk0_A 68 QINTLNTRKAALAS 81 (369)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 142
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=21.91 E-value=47 Score=24.06 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=6.5
Q ss_pred HHHHHHhhHHHHHH
Q psy5720 20 KISFLENNLDQLTK 33 (153)
Q Consensus 20 KiaFLE~NLEQLT~ 33 (153)
|.+.|+.-.|-+..
T Consensus 65 Ka~IL~~aieYIk~ 78 (118)
T 4ati_A 65 KGTILKASVDYIRK 78 (118)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555544444433
No 143
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.74 E-value=2.2e+02 Score=20.17 Aligned_cols=33 Identities=36% Similarity=0.460 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy5720 61 ERVKALETALKEAKEGAMKDRKRYQYEVDRIKEA 94 (153)
Q Consensus 61 ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~ 94 (153)
+|=++|+.+|.|++. +-..-...+.|+..+|+.
T Consensus 36 ~RR~AL~eaL~EN~~-Lh~~ie~l~eEi~~lk~e 68 (83)
T 1uii_A 36 KRRKALYEALKENEK-LHKEIEQKDNEIARLKKE 68 (83)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 456788888888764 333334444444444443
No 144
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.68 E-value=2.1e+02 Score=19.92 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy5720 29 DQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77 (153)
Q Consensus 29 EQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~ 77 (153)
+.++.-.+-+-..|..|+..|.-+|..|..+-..=..+.+.|+-+-+-+
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566678999999999999999888877777777776666544
No 145
>3b8m_A Ferric enterobactin (enterochelin) transport; WZZ, FEPE, bacterial polysaccharide CO-polymerase, metal transport, biosynthetic protein; 2.70A {Escherichia coli} SCOP: d.58.60.1 PDB: 3b8n_A 4e2l_A
Probab=21.23 E-value=3.3e+02 Score=22.02 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy5720 59 TMERVKALETALKEAKE 75 (153)
Q Consensus 59 r~ERIk~LE~aLkeakE 75 (153)
+.-||+.|+.||+.|+.
T Consensus 182 ~~~~I~rL~~AL~IA~a 198 (280)
T 3b8m_A 182 LDANIQRLNYSLDIANA 198 (280)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34789999999999987
No 146
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=20.89 E-value=2.9e+02 Score=21.97 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=36.2
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHh---hhhhhhcchHHHHHHHHHhHHH----HHHHHHHH
Q psy5720 18 RQKISFLENNLDQLTKVHKQLVR---DNADLRCELPKLEKRLRATMER----VKALETAL 70 (153)
Q Consensus 18 kQKiaFLE~NLEQLT~VhKQLV~---dNa~Lk~El~klEKrL~ar~ER----Ik~LE~aL 70 (153)
+.-|.-|..++++|.+.|++++- ....++.+|..+-......... |++|+..+
T Consensus 41 ~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~ 100 (267)
T 1dn1_B 41 RGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 100 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677889999999999998864 2346788877666555555444 45555543
No 147
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=20.88 E-value=1.8e+02 Score=18.91 Aligned_cols=51 Identities=27% Similarity=0.357 Sum_probs=26.4
Q ss_pred HHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 24 LE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
++.||++|..+=.-|-.-=-++=.||..--+.|---.+-+..+..-+..+.
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~ 58 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNT 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999998875555433334444444444444434444444444444333
No 148
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=20.86 E-value=92 Score=23.74 Aligned_cols=28 Identities=11% Similarity=0.221 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5720 47 CELPKLEKRLRATMERVKALETALKEAK 74 (153)
Q Consensus 47 ~El~klEKrL~ar~ERIk~LE~aLkeak 74 (153)
..+.++++.|.....+|..||..|++-.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 34 (198)
T 4ghu_A 7 SQLSRHDQMLSVHDIRLADMDLRFQVLE 34 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777777778888887776654
No 149
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.50 E-value=99 Score=21.72 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=28.1
Q ss_pred hhhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5720 41 DNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97 (153)
Q Consensus 41 dNa~Lk~El~klEKrL~ar~ERIk~LE~aLkeakE~~~k~~~ryq~Ev~riKe~l~~ 97 (153)
-|...++-=.+...+-..+..|+..||.- ...|-..-..++.|++.+++.|.+
T Consensus 23 NN~AarrSR~krk~r~~e~~~r~~~Le~E----N~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 23 NNIAVRKSRDKAKMRNLETQHKVLELTAE----NERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555666677777777752 112222333455566666665553
No 150
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.47 E-value=1.4e+02 Score=21.44 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhHHHH
Q psy5720 17 QRQKISFLENNLDQL 31 (153)
Q Consensus 17 QkQKiaFLE~NLEQL 31 (153)
|+.|.+.||+=|.-.
T Consensus 3 ~~e~~~~~~~~~~~e 17 (125)
T 1joc_A 3 QDERRALLERCLKGE 17 (125)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456666666655433
No 151
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=20.31 E-value=88 Score=21.69 Aligned_cols=21 Identities=14% Similarity=0.298 Sum_probs=16.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q psy5720 51 KLEKRLRATMERVKALETALK 71 (153)
Q Consensus 51 klEKrL~ar~ERIk~LE~aLk 71 (153)
.++-||..-++|++.||..|.
T Consensus 42 sce~KLa~ln~kL~~lE~~L~ 62 (73)
T 3pp5_A 42 STRNKLSDLNEKLTILDRQVD 62 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888774
No 152
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.30 E-value=77 Score=20.87 Aligned_cols=26 Identities=35% Similarity=0.563 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhhhhcchHHHHHHH
Q psy5720 31 LTKVHKQLVRDNADLRCELPKLEKRL 56 (153)
Q Consensus 31 LT~VhKQLV~dNa~Lk~El~klEKrL 56 (153)
|.++--.|-.||+.|.++++-+||-+
T Consensus 22 lenivarlendnanlekdianlekdi 47 (56)
T 3he4_A 22 LENIVARLENDNANLEKDIANLEKDI 47 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHH
Confidence 44445567789999999998888753
No 153
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=20.15 E-value=77 Score=19.52 Aligned_cols=31 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHhhhhhhhcchHHHHHHHH
Q psy5720 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLR 57 (153)
Q Consensus 20 KiaFLE~NLEQLT~VhKQLV~dNa~Lk~El~klEKrL~ 57 (153)
+|.-||...|+ |...|.+|-.||.+|..-|-
T Consensus 2 RMnQLE~kVEe-------Ll~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEE-------IESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH-------HHHhhHHHHHHHHHHHHHhc
Confidence 34555555554 45678888888887776553
Done!