RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5720
(153 letters)
>gnl|CDD|191919 pfam07989, Microtub_assoc, Microtubule associated. This presumed
domain has been identified in two microtubule
associated proteins in Schizosaccharomyces pombe, Mto1
and Pcp1. Mto1 has been identified in association with
spindle pole body and non-spindle pole body
microtubules. The pericentrin homolog Pcp1 is also
associated with the fungal centrosome or spindle pole
body (SPB).
Length = 75
Score = 32.3 bits (74), Expect = 0.016
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 20 KISFLENNLDQLTKVH-KQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72
KI FLE L Q + +++N +L+ E+ L++ L+ + ++ E AL+
Sbjct: 22 KIYFLEERLQQRAPESIEDAIKENIELKVEVETLKRDLQEKKKLLQKAEKALEA 75
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 31.9 bits (73), Expect = 0.062
Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78
+ + LE +++L ++L DL EL L+ + R +++K LE LK KE
Sbjct: 57 ETLRKLEAEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKTLEQKLKNEKEEVQ 116
Query: 79 K--------------DRKRYQYEVDRIKEAVRQ 97
+ + K+ E++++KE + Q
Sbjct: 117 RLKNIIQQRKTQYNHELKKRDREIEKLKERLLQ 149
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 31.3 bits (72), Expect = 0.11
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 38 LVRDNADLRCEL-PKLEKRLRATMERV-KALETALKEAKEGAMKDRKRYQ--YEVD 89
+ +D ADL+ L LE R ER ++E AL+E E + KRY+ Y +D
Sbjct: 87 MAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGID 142
>gnl|CDD|215152 PLN02269, PLN02269, Pyruvate dehydrogenase E1 component subunit
alpha.
Length = 362
Score = 31.6 bits (72), Expect = 0.14
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 2 KFSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 61
++ G+ D G + R +IS + D + +V K L+ EL +EK +R
Sbjct: 260 RYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLLLAHELATEAELKDIEKEIR---- 315
Query: 62 RVKALETALKEAKEGAMKD 80
K ++ A+ +AKE M D
Sbjct: 316 --KEVDDAVAKAKESPMPD 332
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 30.9 bits (70), Expect = 0.16
Identities = 21/82 (25%), Positives = 48/82 (58%)
Query: 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
+Q++S L+ L+ L + +L + DL+ +L L + L++ ER+++LE ++KE +
Sbjct: 83 ELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAK 142
Query: 76 GAMKDRKRYQYEVDRIKEAVRQ 97
+ R+ + EV+ ++E + +
Sbjct: 143 ELRELRQDLREEVEELREELER 164
>gnl|CDD|132740 cd06942, NR_LBD_Sex_1_like, The ligand binding domain of
Caenorhabditis elegans nuclear hormone receptor Sex-1
protein. The ligand binding domain (LBD) of
Caenorhabditis elegans nuclear hormone receptor Sex-1
protein like: Sex-1 protein of C. elegans is a
transcription factor belonging to the nuclear receptor
superfamily. Sex-1 plays pivotal role in sex fate of C.
elegans by regulating the transcription of the
sex-determination gene xol-1, which specifies male (XO)
fate when active and hermaphrodite (XX) fate when
inactive. The Sex-1 protein directly represses xol-1
transcription by binding to its promoter. However, the
active ligand for Sex-1 protein has not yet been
identified. Like other members of the nuclear receptor
(NR) superfamily of ligand-activated transcription
factors, Sex-1 like receptors have a central well
conserved DNA binding domain (DBD), a variable
N-terminal domain, a non-conserved hinge and a
C-terminal ligand binding domain (LBD).
Length = 191
Score = 30.8 bits (70), Expect = 0.17
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 6 NESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLR-CELPKL 52
+D + + QK+ + N L + K H+ ++ D +LP L
Sbjct: 142 VLFKDGEDTEQRLQKLFDILNRLRNMNKEHQNILADRDKRSNLQLPPL 189
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 30.8 bits (70), Expect = 0.24
Identities = 17/76 (22%), Positives = 39/76 (51%)
Query: 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYE 87
L +L K ++L + + L EL +L++ L + ++ L++ L+E +E + ++
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293
Query: 88 VDRIKEAVRQKNLARR 103
+ I+E + +L R
Sbjct: 294 KEEIEELEGEISLLRE 309
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 30.5 bits (69), Expect = 0.32
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 15/94 (15%)
Query: 15 LAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV----------- 63
RQ+ LE K+ K+ V D + KL+ + A+ ER+
Sbjct: 308 TTVRQENEELEEEY----KIKKRTVELLPDAENNVAKLQALVVASSERLLELAQQWEAHR 363
Query: 64 KALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97
L + KE Q ++D IK+ +
Sbjct: 364 TPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNK 397
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 30.4 bits (69), Expect = 0.43
Identities = 17/93 (18%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 17 QRQKISFLENNL----DQLTKVHKQLVRDN---ADLRCELPKLEKRLRATMERVKALETA 69
R++++ LE L QL ++ +L A+L +L +L++ L + ++ LE
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
Query: 70 LKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR 102
L+E + + ++ + ++ + Q
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLN 399
>gnl|CDD|236808 PRK10963, PRK10963, hypothetical protein; Provisional.
Length = 223
Score = 29.9 bits (68), Expect = 0.45
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 59
QR I LE + L + N DL L L+ RL A
Sbjct: 49 QRNHIHVLEEEMTLLM----EQAIANEDLFYRLLPLQSRLAAA 87
>gnl|CDD|218915 pfam06156, DUF972, Protein of unknown function (DUF972). This
family consists of several hypothetical bacterial
sequences. The function of this family is unknown.
Length = 106
Score = 28.4 bits (64), Expect = 0.60
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 20 KISFLENNLDQLTK-------VHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72
+S LE L+QL +L+ +NA+LR E L +RL + K E K+
Sbjct: 9 ALSELEQQLNQLLAELGELKQQLAELLEENAELRIENEHLRERLEELEQEQKEKEKGKKK 68
Query: 73 AKEGAMKDRKRYQ 85
EG + YQ
Sbjct: 69 LGEGYDNLARLYQ 81
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 29.2 bits (66), Expect = 0.67
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRD--NADLRCELPKLEKRLRATMERVKALETALK---- 71
R+++ L+ + L K L D +L+ E+ +L+K +R E++++LE K
Sbjct: 85 REEVQLLKQDCSTLEIELKSLTSDLTTEELQEEIQELKKEVREIEEKLESLEEGWKPVTP 144
Query: 72 EAKEGAMKDRKRYQYEVDRIK 92
E E K+ K E + K
Sbjct: 145 EEMEKVKKEYKDLHKEWKKRK 165
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 29.7 bits (67), Expect = 0.68
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM- 78
+I+ L+ LD+L + ++L + ADL + +E ++ E + +K+ +
Sbjct: 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ 459
Query: 79 --KDRKRYQYEVDRIKEAVRQ 97
D +Y+ E+ +KE +
Sbjct: 460 LAADLSKYEQELYDLKEEYDR 480
Score = 27.0 bits (60), Expect = 5.2
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77
+I E L+QL + ++ DL+ E ++EK L E A EA+ A
Sbjct: 447 ALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK-----LQRELAEAEAQARA 501
Query: 78 MKDRKRYQYEVDRIKEAVRQ 97
++R R V+ + +A Q
Sbjct: 502 SEERVRGGRAVEEVLKASIQ 521
>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
Length = 216
Score = 29.1 bits (65), Expect = 0.83
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 8 SEDDGGSLAQRQKISFLENNLDQLTKVHK 36
+E+DG +LA+++ +SFLE + + T V K
Sbjct: 136 AEEDGQALAEKEGLSFLETSALEATNVEK 164
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 29.1 bits (65), Expect = 0.84
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 48 ELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARR 103
L K ++LR + L L E D + ++I+ + +KNL RR
Sbjct: 433 ALMKAVEQLRIVEPVARELLPELDARIEELRADGE------EKIRSGMGEKNLRRR 482
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 0.87
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 12/119 (10%)
Query: 14 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV-KALETALKE 72
QK E L + K+ ++L + KL++ +E K + A+KE
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEE-------KKEKLQEEEDKLLEEAEKEAQQAIKE 581
Query: 73 AKEGAMKDRKRYQYEVDRIKEAVRQKNL--ARR--GPAPQIAKPIRAGQPVVPPVIRPG 127
AK+ A + K + +V+ L AR+ A + + + Q ++ G
Sbjct: 582 AKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVG 640
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 28.5 bits (64), Expect = 1.4
Identities = 14/74 (18%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83
L + +L K +L+ +N L+ E +L+KR ++ +++ + A++ + K+ ++
Sbjct: 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQI---QQAVQSETQELTKEIEQ 120
Query: 84 YQYEVDRIKEAVRQ 97
+ E +++ + Q
Sbjct: 121 LKSERQQLQGLIDQ 134
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 28.4 bits (64), Expect = 1.5
Identities = 20/74 (27%), Positives = 32/74 (43%)
Query: 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83
LE + L + + L D L EL L +R ALE L++ K+ +
Sbjct: 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDC 201
Query: 84 YQYEVDRIKEAVRQ 97
E+DR KE +++
Sbjct: 202 DPTELDRAKEKLKK 215
>gnl|CDD|218434 pfam05103, DivIVA, DivIVA protein. The Bacillus subtilis divIVA1
mutation causes misplacement of the septum during cell
division, resulting in the formation of small,
circular, anucleate mini-cells. Inactivation of divIVA
produces a mini-cell phenotype, whereas overproduction
of DivIVA results in a filamentation phenotype. These
proteins appear to contain coiled-coils.
Length = 131
Score = 27.6 bits (62), Expect = 1.6
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 28 LDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYE 87
LDQ+ K ++ L ++N +L+ E+ +LE++L E + L+ L A+E A + + Q E
Sbjct: 27 LDQVIKDYEALYKENEELKEEIERLEEKLEEYKELEETLQKTLVVAQETAEEVKANAQKE 86
Query: 88 VDRIKEAVRQK 98
+ I + K
Sbjct: 87 AELIIKEAEAK 97
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 28.0 bits (63), Expect = 1.7
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 52 LEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR 102
LE R E+++ LE LKEAKE A + ++Y+ EV R K V + +L R
Sbjct: 83 LENRSLKDDEKMEQLEAQLKEAKEIAEEADRKYE-EVAR-KLVVVEGDLER 131
>gnl|CDD|226396 COG3879, COG3879, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 247
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 30 QLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVD 89
Q +K + DL EL L+K++ V+ LE L + + D + ++
Sbjct: 40 QTSKGESVRRARDLDLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLE 99
Query: 90 RIKEAV 95
+++
Sbjct: 100 KLRMLA 105
>gnl|CDD|238105 cd00179, SynN, Syntaxin N-terminus domain; syntaxins are nervous
system-specific proteins implicated in the docking of
synaptic vesicles with the presynaptic plasma membrane;
they are a family of receptors for intracellular
transport vesicles; each target membrane may be
identified by a specific member of the syntaxin family;
syntaxins contain a moderately well conserved
amino-terminal domain, called Habc, whose structure is
an antiparallel three-helix bundle; a linker of about
30 amino acids connects this to the carboxy-terminal
region, designated H3 (t_SNARE), of the syntaxin
cytoplasmic domain; the highly conserved H3 region
forms a single, long alpha-helix when it is part of the
core SNARE complex and anchors the protein on the
cytoplasmic surface of cellular membranes; H3 is not
included in defining this domain.
Length = 151
Score = 27.6 bits (62), Expect = 2.0
Identities = 16/86 (18%), Positives = 40/86 (46%), Gaps = 9/86 (10%)
Query: 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME--------RVKALETAL 70
+++ + N+D++++ ++L + ++ L P + L+ +E K ++ L
Sbjct: 6 EEVEEIRGNIDKISEDVEELQKLHSQLL-TAPDADPELKQELESLVQEIKKLAKEIKGKL 64
Query: 71 KEAKEGAMKDRKRYQYEVDRIKEAVR 96
KE +E ++ VDRI++
Sbjct: 65 KELEESNEQNEALNGSSVDRIRKTQH 90
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe
Cdc15, and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Schizosaccharomyces pombe Cdc15 and Imp2, and similar
proteins. These proteins contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. S. pombe Cdc15 and
Imp2 play both distinct and overlapping roles in the
maintenance and strengthening of the contractile ring at
the division site, which is required in cell division.
Cdc15 is a component of the actomyosin ring and is
required in normal cytokinesis. Imp2 colocalizes with
the medial ring during septation and is required for
normal septation. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 236
Score = 27.7 bits (62), Expect = 2.0
Identities = 18/90 (20%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 24 LENNLDQLTKVHKQLVRDNADLRCELPK-LEKRLRA----TMERVKALETAL------KE 72
L+N+LD L + + + + ++ + LE++L A ++ K +++ + K+
Sbjct: 58 LKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQSHMEKLLKKKQ 117
Query: 73 AKEGAM-KDRKRYQYEVDRIKEAVRQKNLA 101
+E + K R++Y+ + +I Q L
Sbjct: 118 DQEKYLEKAREKYEADCSKINSYTLQSQLT 147
>gnl|CDD|148701 pfam07246, Phlebovirus_NSM, Phlebovirus nonstructural protein NS-M.
This family consists of several Phlebovirus
nonstructural NS-M proteins which represent the
N-terminal region of the M polyprotein precursor. The
function of this family is unknown.
Length = 264
Score = 27.9 bits (61), Expect = 2.3
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 5 GNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPK-LEKRLRATMERV 63
E E+D + +I +N + K N R + + + R+ +M RV
Sbjct: 161 TKEMEEDSRNQIAHHEIQQKKNEI------QK---LRNDLKRGQEHRDAKLRVEESMARV 211
Query: 64 KALETALKEAKEGAMKDRKRYQYEVDRIK 92
K L+ LK+ + + Q +IK
Sbjct: 212 KGLKEELKQLTDELQHAKSEMQSLRKKIK 240
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 27.4 bits (61), Expect = 2.5
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 13 GSLAQRQKISFLEN-------------NLDQLTKVHKQLVRDNADLRCELPKLEKRLRAT 59
GSL + ISFL+N ++L ++ L + N +L EL KL +RL
Sbjct: 78 GSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137
Query: 60 MERVKAL 66
E + L
Sbjct: 138 EEDYQTL 144
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF2h.
Eukaryotic translation initiation factor 3 (eIF3)
subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma;
eIF3-p40) is an evolutionarily non-conserved subunit of
the functional core that comprises eIF3a, eIF3b, eIF3c,
eIF3e, eIF3f, and eIF3h, and contains the MPN domain.
However, it lacks the canonical JAMM motif, and
therefore does not show catalytic isopeptidase
activity.Together with eIF3e and eIF3f, eIF3h stabilizes
the eIF3 complex. Results suggest that eIF3h regulates
cell growth and viability, and that over-expression of
the gene may provide growth advantage to prostate,
breast, and liver cancer cells. For example, EIF3h gene
amplification is common in late-stage prostate cancer
suggesting that it may be functionally involved in the
progression of the disease. It has been shown that
coamplification of MYC, a well characterized oncogene
involved in cell growth, differentiation, and apoptosis,
and EIF3h in patients with non-small cell lung cancer
(NSCLC) improves survival if treated with the Epidermal
Growth Factor Receptor Tyrosine Kinase Inhibitor
(EGFR-TKI), Gefitinib. Plant eIF3h is implicated in
translation of specific mRNAs.
Length = 266
Score = 27.6 bits (62), Expect = 2.7
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 52 LEKRLRATMERVKALETAL-KEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR--RGPAPQ 108
LEK L ME V L K R Q ++ + + + +N R RG P
Sbjct: 205 LEKNLELLMESVDELSQEQGKFNYYQRNL--ARQQAQIQQWLQKRKAENAQREARGEEPL 262
>gnl|CDD|217835 pfam03999, MAP65_ASE1, Microtubule associated protein (MAP65/ASE1
family).
Length = 619
Score = 27.5 bits (61), Expect = 2.9
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77
R+ I L+ L+ L KQ DLR ++ +L RL+ + E K ++EA +
Sbjct: 206 RETIDKLDKMLENLAAQKKQRADKIDDLREQIQELWNRLQISDEEQK---RFVREATILS 262
Query: 78 MKDRKRYQYEVDRIKEAVRQKNL 100
+ KR + EV+R+ EA++++NL
Sbjct: 263 QESIKRLEEEVERL-EALKKQNL 284
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 26.8 bits (60), Expect = 3.6
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEA 94
+L ++ L E +LEKR+ +++A+E +E ++ + KR+ E+ +K+
Sbjct: 122 KSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQ---IEEKRHADEIAFLKKQ 178
Query: 95 VRQK 98
+Q
Sbjct: 179 NQQL 182
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 26.5 bits (59), Expect = 5.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 38 LVRDNADLRCEL-PKLEKRLRATMER-VKALETALKEAKEGAMKDRKRYQ--YEVD 89
+VR+ ADL+ L LE R +R ++ AL E E ++KRY+ Y +D
Sbjct: 86 IVREYADLKIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGID 141
>gnl|CDD|234170 TIGR03336, IOR_alpha, indolepyruvate ferredoxin oxidoreductase,
alpha subunit. Indolepyruvate ferredoxin oxidoreductase
(IOR) is an alpha 2/beta 2 tetramer related to ketoacid
oxidoreductases for pyruvate (1.2.7.1, POR),
2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate
(1.2.7.7, VOR). These multi-subunit enzymes typically
are found in anaerobes and are inactiviated by oxygen.
IOR in Pyrococcus acts in fermentation of all three
aromatic amino acids, following removal of the amino
group by transamination. In Methanococcus maripaludis,
by contrast, IOR acts in the opposite direction, in
pathways of amino acid biosynthesis from phenylacetate,
indoleacetate, and p-hydroxyphenylacetate. In M.
maripaludis and many other species, iorA and iorB are
found next to an apparent phenylacetate-CoA ligase.
Length = 595
Score = 27.0 bits (60), Expect = 5.1
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 84 YQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPG 127
+ D + A+ + LA P+ KP+ PV PP + G
Sbjct: 321 GELNPDIVVNALAKFGLA---PSVTHEKPVPKPLPVRPPSLCAG 361
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 26.0 bits (58), Expect = 5.5
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 19 QKISFLENNLDQL---TKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
+K LE +++L K K+ + ++ L L +R++ E ++ E LKE E
Sbjct: 42 KKNQQLEEEVEKLEEQLKEAKEKLEESEKLATNAEALTRRIQLLEEELEESEKRLKETTE 101
Score = 26.0 bits (58), Expect = 5.8
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 36 KQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGA 77
K+L ++N + E+ L+K+ + E V+ LE LKEAKE
Sbjct: 24 KELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEAKEKL 65
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 26.7 bits (60), Expect = 5.6
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 51 KLEKRLRATMERVKALETALKEAK-------EGAMKDRKRYQYEVDRIKEAVRQ 97
+ +E+ KAL K+ + EG + K+Y +++KE ++
Sbjct: 212 DESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELKS 265
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 26.8 bits (59), Expect = 5.6
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Query: 14 SLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEA 73
+L + + L+ + ++L + ++L ++ +L EL +LE ER+K LE
Sbjct: 123 TLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRL 182
Query: 74 KEGAMKDRKRYQYEVDRIKE 93
+E K+ EV +K+
Sbjct: 183 EE----MLKKLPGEVYDLKK 198
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin. Syntaxins are the prototype family
of SNARE proteins. They usually consist of three main
regions - a C-terminal transmembrane region, a central
SNARE domain which is characteristic of and conserved in
all syntaxins (pfam05739), and an N-terminal domain that
is featured in this entry. This domain varies between
syntaxin isoforms; in syntaxin 1A it is found as three
alpha-helices with a left-handed twist. It may fold back
on the SNARE domain to allow the molecule to adopt a
'closed' configuration that prevents formation of the
core fusion complex - it thus has an auto-inhibitory
role. The function of syntaxins is determined by their
localisation. They are involved in neuronal exocytosis,
ER-Golgi transport and Golgi-endosome transport, for
example. They also interact with other proteins as well
as those involved in SNARE complexes. These include
vesicle coat proteins, Rab GTPases, and tethering
factors.
Length = 103
Score = 25.8 bits (57), Expect = 5.8
Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 10/91 (10%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEA---- 73
R++I + NL++L K+HK+++ +L + L + +K L A+K+
Sbjct: 13 REEIQKIRQNLEELQKLHKRILTAP----DSDKELREELEELTQEIKQLARAIKKKLKSL 68
Query: 74 -KEGAMKDRKRYQYEVDRIKEAVRQKNLARR 103
+ + + VDRI++ NL+++
Sbjct: 69 QQLNKSEQGLGHSSAVDRIRKNQ-LANLSKK 98
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 26.6 bits (59), Expect = 5.8
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 18 RQKISFLENNLDQLT--KVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
R++I E L + + + L + + + LE L ME ++ LE +++ KE
Sbjct: 72 RERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKE 131
Query: 76 GAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAK 111
+ K R++E V + + + + +
Sbjct: 132 RLERLEKNLAEAEARLEEEVAEIREEGQELSSKREE 167
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 26.6 bits (59), Expect = 6.0
Identities = 23/86 (26%), Positives = 39/86 (45%)
Query: 25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRY 84
+ L Q+ K L + + + + KLEK+L++ + +LE L E + K RK+
Sbjct: 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96
Query: 85 QYEVDRIKEAVRQKNLARRGPAPQIA 110
R+ Q+ RR A Q+A
Sbjct: 97 ADLNARLNALEVQEREQRRRLAEQLA 122
>gnl|CDD|217894 pfam04102, SlyX, SlyX. The SlyX protein has no known function.
It is short less than 80 amino acids and is found close
to the slyD gene. The SlyX protein has a conserved
PPH(Y/W) motif at its C-terminus. The protein may be a
coiled-coil structure.
Length = 68
Score = 24.8 bits (55), Expect = 6.6
Identities = 11/50 (22%), Positives = 30/50 (60%), Gaps = 7/50 (14%)
Query: 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA 69
+++F E+ +++L +V + + +L+++LR +ER+K +E++
Sbjct: 12 RLAFQEDTIEELNQV---VAEQQRQID----RLQRQLRLLVERLKEVESS 54
>gnl|CDD|222463 pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains
phage proteins and bacterial proteins that are likely to
represent integrated phage proteins. This family
includes the Lambda phage Ea22 early protein as well as
the Bacteriophage P22 Ead protein.
Length = 143
Score = 25.7 bits (56), Expect = 8.3
Identities = 9/59 (15%), Positives = 24/59 (40%)
Query: 25 ENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKR 83
++ ++ +V + +N D+ + +L L A + +K L + + + R
Sbjct: 80 QDRIEAFEEVFEDAFIENEDVADDADELRDELEAAEKVIKELAKQAENYEGVITRGATR 138
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in
nitrogen fixation and metabolism regulation [Signal
transduction mechanisms].
Length = 712
Score = 26.3 bits (58), Expect = 8.5
Identities = 9/50 (18%), Positives = 14/50 (28%)
Query: 86 YEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWG 135
+ V Q L P P + + PV+ T+ R
Sbjct: 180 ALLRADGRIVAQSYLDFDFPFPAPPEDSIKKADLGKPVLIEPDNTNIRGA 229
>gnl|CDD|225711 COG3170, FimV, Tfp pilus assembly protein FimV [Cell motility and
secretion / Intracellular trafficking and secretion].
Length = 755
Score = 26.4 bits (58), Expect = 8.5
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 36 KQLVRDNADLRCELPKLEKRLRATME-RVKALETALKEAKEGAMKDRKRYQYEVDRIKEA 94
K + ++R A + RV L+ L +A+ + + +A
Sbjct: 276 KADRVGKPVAKAPAKVAKERALAELPARVAELQAQLNKAQH-ELAQKAAPLAAAQAALDA 334
Query: 95 VRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGG 128
+ A PAPQ++ QP + PG
Sbjct: 335 PAETATAPSAPAPQVSAESSPAQPGSYLLAAPGD 368
>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904). This
family consists of several bacterial and archaeal
hypothetical proteins of unknown function.
Length = 72
Score = 24.6 bits (54), Expect = 8.7
Identities = 12/47 (25%), Positives = 27/47 (57%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVK 64
+ +I L+ +QL++ +++L +N L+ E + RLRA + ++
Sbjct: 24 QMEIEELKEENEQLSEENEELEEENKKLKEERNAWQSRLRALLGKLD 70
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase.
Members of this protein family have a novel N-terminal
domain, a single predicted membrane-spanning helix, and
a predicted cystosolic histidine kinase domain. We
designate this protein PrsK, and its companion
DNA-binding response regulator protein (TIGR02915) PrsR.
These predicted signal-transducing proteins appear to
enable enhancer-dependent transcriptional activation.
The prsK gene is often associated with exopolysaccharide
biosynthesis genes [Protein fate, Protein and peptide
secretion and trafficking, Signal transduction,
Two-component systems].
Length = 679
Score = 26.2 bits (58), Expect = 8.9
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 59 TMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRA 115
+ R+K L L+ +++ K VD ++ A+ K P I +
Sbjct: 520 AVNRMKKLLAQLRS---KGLEEEKLCVDLVDLLRRAIASKRAQGPRPEVSIDTDLSV 573
>gnl|CDD|218630 pfam05546, She9_MDM33, She9 / Mdm33 family. Members of this family
are mitochondrial inner membrane proteins with a role in
inner mitochondrial membrane organisation and
biogenesis.
Length = 208
Score = 25.8 bits (57), Expect = 8.9
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 62 RVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKN--LARR 103
++ LET L+ AKE + +K Y + R + R+ N L R+
Sbjct: 40 SIEELETQLRAAKEEVREAKKAYSEAIARRSSSQREVNELLQRK 83
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 26.4 bits (58), Expect = 9.0
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 18 RQKISFLENNLDQLTKVHKQLVRDNADL--------------RCELPKLEKRLRATMERV 63
R +IS L + L QL ++N L + + +EKRL++ +
Sbjct: 433 RNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSR 492
Query: 64 KALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLAR 102
E L E ++KR + E + A Q +R
Sbjct: 493 VNAEKQLAE-------EKKRKKEEEETAARAAAQAAASR 524
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 26.3 bits (58), Expect = 9.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 128 GVTSPRWGDEERKRKVIMGGGATRG 152
G+ S RW D+++ RK + GG G
Sbjct: 71 GIDSLRWEDQQKIRKYVESGGTGTG 95
>gnl|CDD|222493 pfam14010, PEPcase_2, Phosphoenolpyruvate carboxylase. This family
of phosphoenolpyruvate carboxylases is based on
seqeunces not picked up by the model for PEPcase,
PF00311. Most of the family members are from Archaea.
Length = 476
Score = 26.1 bits (58), Expect = 9.3
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 83 RYQYEVDRIKEAVRQKNLARRGPAPQI 109
RY Y ++ +K+A+ + N A R +
Sbjct: 273 RYDYPLEEVKKAIEKINEAERKKPRIL 299
>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The
Escherichia coli YbbB protein was shown to encode a
selenophosphate-dependent tRNA 2-selenouridine synthase,
essential for modification of some tRNAs to replace a
sulfur atom with selenium. This enzyme works with SelD,
the selenium donor protein, which also acts in
selenocysteine incorporation. Although the members of
this protein family show a fairly deep split, sequences
from both sides of the split are supported by
co-occurence with, and often proximity to, the selD gene
[Protein synthesis, tRNA and rRNA base modification].
Length = 311
Score = 26.0 bits (58), Expect = 9.6
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 24 LENNLDQLTKVHKQLVRDNADLRCELPKLEKRL-RATMERVKAL--ETALKEAKEGAMKD 80
LE +++L + + D L L ++ KRL +++ AL +E ++D
Sbjct: 233 LEERVERLVEEYAGFEEDPEFLAAALERIRKRLGGERYQQLLALLEAGDHREWIRALLED 292
Query: 81 R--KRYQYEVDR 90
Y Y++ +
Sbjct: 293 YYDPMYAYQLAK 304
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.133 0.375
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,991,180
Number of extensions: 748830
Number of successful extensions: 1338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 203
Length of query: 153
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 64
Effective length of database: 6,990,096
Effective search space: 447366144
Effective search space used: 447366144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (24.9 bits)