RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5720
(153 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 1e-05
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 33/160 (20%)
Query: 24 LENNLDQLTKVHKQLVRDN-----ADLRC----ELPK--LEKR-------LRATMERVKA 65
++ + +K ++ + C ++PK L K + +
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 66 LETALKEAKEGAMK------DRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPV 119
L L +E ++ R Y++ + IK RQ ++ R Q + Q
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 120 VP-PVIRPGGVTSPR-WGDEERKRKVI----MGGGATRGK 153
V R R E R K + + G GK
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS---GK 163
Score = 31.4 bits (70), Expect = 0.11
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 31 LTKVHKQ--LVRDNADLRCELPKLEKRLRATMERVKALETALKEA 73
+ K+HK + + + +P + L+ +E AL ++ +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 27.1 bits (59), Expect = 3.0
Identities = 9/70 (12%), Positives = 25/70 (35%), Gaps = 9/70 (12%)
Query: 1 MKFSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 60
+ N + + + L+ L Q+ +++++ + ++ LR +
Sbjct: 187 LNL-KNCNSPE-------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 61 ERVKALETAL 70
+ K E L
Sbjct: 239 KS-KPYENCL 247
Score = 26.7 bits (58), Expect = 4.4
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 10/36 (27%)
Query: 14 SLAQRQKISF----------LENNLDQLTKVHKQLV 39
SL ++Q L+ L+ +H+ +V
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.4 bits (88), Expect = 2e-04
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 15/45 (33%)
Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATME 61
++Q + L+ +L K++ D+A P L ++ATME
Sbjct: 18 EKQALKKLQASL----KLYAD---DSA------PALA--IKATME 47
Score = 32.2 bits (72), Expect = 0.037
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 36/63 (57%)
Query: 53 EKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKP 112
EK + +K L+ +LK Y D AP +A
Sbjct: 18 EK------QALKKLQASLK-------------LYADDS---------------APALA-- 41
Query: 113 IRA 115
I+A
Sbjct: 42 IKA 44
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/88 (15%), Positives = 36/88 (40%)
Query: 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
++ LEN + QL + + ++ L ++ LE E++++ L+ ++E
Sbjct: 918 RYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE 977
Query: 76 GAMKDRKRYQYEVDRIKEAVRQKNLARR 103
A R + I + ++ + +
Sbjct: 978 EAKNATNRVLSLQEEIAKLRKELHQTQT 1005
Score = 26.6 bits (59), Expect = 4.4
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
++ N + L + +L ++ + E +E+ + L + LKE
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 76 GAMKD----RKRYQYEVDRIKEAVRQK 98
+ +R + I E + +K
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKK 1060
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 35.6 bits (82), Expect = 0.005
Identities = 16/102 (15%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 52 LEKRLRATMERVKALETALKEA-KEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIA 110
L+ + + LK +EG ++ K + +++ A R + I
Sbjct: 1796 LDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQ 1855
Query: 111 KPIRAGQPVVPPVIRPGGVTSPRWGDEERKRKVIMGGGATRG 152
P + + K VI GG G
Sbjct: 1856 VREEEQGPAPRGLPPIALTGLSKTFCPPHKSYVITGGLGGFG 1897
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.020
Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 49/177 (27%)
Query: 12 GGSLAQR-----QKISFLENNLD---QLTKVHKQLVRDNADLRCELPKLEKRLRAT---- 59
GG +R + F E +D + K+ K++ + + L AT
Sbjct: 1677 GGEKGKRIRENYSAMIF-ETIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQ 1733
Query: 60 -----MERVKALETALKEAKEGAMKDRKRY------QY-------EVDRIKEAVRQKNLA 101
ME KA LK +G + + +Y +V I+ V +
Sbjct: 1734 PALTLME--KAAFEDLKS--KGLIPADATFAGHSLGEYAALASLADVMSIESLVE---VV 1786
Query: 102 R-RGPAPQIAKPI----RAGQPVVPPVIRPGGVTSPRWGDEERKRKVIMGGGATRGK 153
RG Q+A P R+ ++ I PG V + +E + V+ G G
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGMIA--INPGRVAAS--FSQEALQYVVERVGKRTGW 1839
>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia
coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A*
1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*
Length = 330
Score = 32.1 bits (74), Expect = 0.054
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL L K AT E++KA A+K A EG MK
Sbjct: 241 DLTVRLEK-----AATYEQIKA---AVKAAAEGEMK 268
>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso;
irreversible inhibitor, protein-ligand complex,X-RAY,
glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma
cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A*
1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*
Length = 359
Score = 31.8 bits (73), Expect = 0.059
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL + +++ + A ALK A + MK
Sbjct: 259 DLTFTAAR-----DTSIQEIDA---ALKRASKTYMK 286
>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis,
malaria, structural genomics; HET: NAD; 1.90A
{Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A*
3chz_A 3cie_A* 3cif_A* 3sth_A*
Length = 354
Score = 31.8 bits (73), Expect = 0.062
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL C+L K A++E + A+KEA G MK
Sbjct: 262 DLTCKLAK-----PASIEEIYQ---AVKEASNGPMK 289
>2b4r_O Glyceraldehyde-3-phosphate dehydrogenase; SGPP, structural
genomics, PSI, structural genomi pathogenic protozoa
consortium; HET: NAD AES; 2.25A {Plasmodium falciparum}
SCOP: c.2.1.3 d.81.1.1 PDB: 2b4t_O* 1ywg_O*
Length = 345
Score = 31.4 bits (72), Expect = 0.080
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL C L K A E V +K+A EG +K
Sbjct: 255 DLVCRLQK-----PAKYEEVAL---EIKKAAEGPLK 282
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 0.087
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78
++ E LTK+ + ++L L K EK + + + LE + E
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIA 1077
Query: 79 KDRKRYQYEVDRIKEAVRQKN 99
+ + ++ +K + +K
Sbjct: 1078 ELQA----QIAELKAQLAKKE 1094
Score = 29.0 bits (65), Expect = 0.64
Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Query: 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEGAM 78
IS L+ +L+ + + DL EL L+ L T++ + L+ +
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ-ELRGSDYKDD 1181
Query: 79 KDR 81
D+
Sbjct: 1182 DDK 1184
Score = 26.7 bits (59), Expect = 3.9
Identities = 14/88 (15%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
++ + L+ L T+++ + L + +LE+ L R++ E ++ +
Sbjct: 889 QLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQA 948
Query: 76 GAMKDRKRYQYEVDRIKEAVRQKNLARR 103
++K+ Q ++ ++E + ++ AR+
Sbjct: 949 ----EKKKMQQQMLDLEEQLEEEEAARQ 972
>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding
rossmann-fold domain, alpha and beta protein,
oxidoreductase; HET: NAD; 2.00A {Saccharomyces
cerevisiae} PDB: 2i5p_O*
Length = 332
Score = 31.4 bits (72), Expect = 0.100
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL +L K T + +K +K A EG +K
Sbjct: 242 DLTVKLNK-----ETTYDEIKK---VVKAAAEGKLK 269
>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase,
structural genomics, structural genomics CON SGC,
glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB:
3pfw_O* 2vyn_D* 2vyv_D*
Length = 346
Score = 31.4 bits (72), Expect = 0.10
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL C L + A +K A+K A +G M
Sbjct: 248 DLTCRLAQ-----PAPYSAIKE---AVKAAAKGPMA 275
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 31.3 bits (70), Expect = 0.11
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 16 AQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
K+ LE +D+ T V A L ++ K+E VK + A+
Sbjct: 166 EALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIEWEYECEPGMVKGIHHGPSVAQP 225
Query: 76 GAMKDRKRYQYEV 88
+ + + +
Sbjct: 226 IHLDSTQLSRKFI 238
>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH,
RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET:
NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O
Length = 337
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL + K A+ + +K+ A+K A EG +K
Sbjct: 246 DLTVRIEK-----AASYDAIKS---AIKSASEGKLK 273
>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann
fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A
{Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O*
1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A*
1gpd_G* 4gpd_1
Length = 335
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL C L K A + +K +K+A EG +K
Sbjct: 244 DLTCRLEK-----PAKYDDIKK---VVKQASEGPLK 271
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A
biosynthesis pathway, transferase; 1.30A {Pseudomonas
aeruginosa}
Length = 372
Score = 29.9 bits (68), Expect = 0.26
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG 76
+ + A +R +L + +RL+ +R+ A+ ++ + +
Sbjct: 332 AAEWKKSAARIR-QLDDMARRLQQLEKRLAAVTSSGDASSDA 372
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;
UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A
biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis}
PDB: 2iu9_A* 2iua_A*
Length = 374
Score = 29.9 bits (68), Expect = 0.31
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALETALKE 72
++++ R A +R LP+LE+R+ A + V+ LE ++
Sbjct: 337 YQEIHRQVAKVR-NLPRLEERIAALEKLVQKLEALSEQ 373
>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase;
microspectrophotometry, reaction intermediate,
dehydrogenase phosphate binding site; HET: G3H NAD;
1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3
d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O*
1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*
Length = 334
Score = 28.6 bits (65), Expect = 0.76
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL EL K T+E V A ALK A EG +K
Sbjct: 242 DLVAELEK-----EVTVEEVNA---ALKAAAEGELK 269
>2wuj_A Septum site-determining protein diviva; bacterial cell division,
septation, cell cycle, sporulation; 1.40A {Bacillus
subtilis} PDB: 2wuk_A
Length = 57
Score = 26.6 bits (59), Expect = 0.84
Identities = 7/29 (24%), Positives = 19/29 (65%)
Query: 28 LDQLTKVHKQLVRDNADLRCELPKLEKRL 56
L Q+ K ++ ++R +L ++ +L++R+
Sbjct: 29 LAQVRKDYEIVLRKKTELEAKVNELDERI 57
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 1.5
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 53 EKRLRATMERVKALETALKEAKEGAMKDR-KRYQYEVDRIKEAVRQK 98
KRL+ K +E +E + +++ +R +V++ K R
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 141
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon,
crotonase superfamily, spiral domain, ligase; 3.20A
{Escherichia coli} SCOP: c.14.1.4
Length = 339
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/45 (22%), Positives = 23/45 (51%)
Query: 19 QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERV 63
Q I+ LE +D LT +Q + + ++ E+ +L ++ ++
Sbjct: 30 QPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKI 74
>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis,
oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A
{Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O*
1vc2_A*
Length = 331
Score = 27.4 bits (62), Expect = 1.7
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
D+ L + T E V A ALK A EG +K
Sbjct: 240 DITALLKR-----EVTAEEVNA---ALKAAAEGPLK 267
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 26.8 bits (59), Expect = 1.7
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE 75
+++S LE++L Q + +QL + +L LE+ RAT+ ++ E L +A E
Sbjct: 33 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIE 91
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 27.0 bits (59), Expect = 2.0
Identities = 21/89 (23%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKE- 75
+++S LE++L Q + +QL + +L LE+ RAT+ ++ E L +A E
Sbjct: 86 SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIER 145
Query: 76 -----GAMKDRKRYQYEVDRIKEAVRQKN 99
+ +++ V R+K+ R
Sbjct: 146 NAFLESELDEKESLLVSVQRLKDEARDLR 174
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 26.7 bits (60), Expect = 2.3
Identities = 7/55 (12%), Positives = 28/55 (50%)
Query: 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97
+++ + +L + ++ L+ A+ +A++ K + ++ ++EA+++
Sbjct: 39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQK 93
>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural
genomics, national institute of allergy AN infectious
diseases; 2.55A {Bacillus anthracis}
Length = 345
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL ++ + T+E + A K GA+K
Sbjct: 245 DLVVDVKR-----DVTVEAIND---AFKTVANGALK 272
>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold,
GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A
{Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O*
2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A*
3k2b_A* 3rvd_A* 2pkq_O*
Length = 337
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL ++ K + E V A A +E+ + +K
Sbjct: 244 DLVVQVSK-----KTFAEEVNA---AFRESADNELK 271
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein
structure initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 25.5 bits (56), Expect = 2.8
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Query: 20 KISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETAL 70
++SF E L +L++ AD R + + +R +E + + + L
Sbjct: 22 RLSFQEQALTELSEA-------LADARLTGARNAELIRHLLEDLGKVRSTL 65
>1cc1_L Hydrogenase (large subunit); NI-Fe-Se hydrogenase, oxidoreductase;
2.15A {Desulfomicrobium baculatum} SCOP: e.18.1.1
Length = 498
Score = 26.8 bits (59), Expect = 3.2
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 6/73 (8%)
Query: 60 MERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPV 119
A L + + K Y +++ +A+ + + A + G+
Sbjct: 134 FVPRYANADLLTDRIKDGAKADATNTYGLNQYLKALEIRRICHEMVA------MFGGRMP 187
Query: 120 VPPVIRPGGVTSP 132
+ GG T
Sbjct: 188 HVQGMVVGGATEI 200
>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold,
protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A
{Synechococcus SP} PDB: 2duu_A
Length = 380
Score = 26.8 bits (60), Expect = 3.2
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL ++ K E+V L++A + MK
Sbjct: 246 DLVVQVEK-----PTITEQVNE---VLQKASQTTMK 273
>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold,
oxidoreductase-protein binding complex; HET: NAD; 2.20A
{Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*
Length = 339
Score = 26.7 bits (60), Expect = 3.5
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL ++ K E+V L++A + MK
Sbjct: 246 DLVVQVEK-----PTITEQVNE---VLQKASQTTMK 273
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 26.7 bits (59), Expect = 3.9
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 58 ATMERVKALETALKEAKEGAMKDRKRYQYEV 88
++ + LK + K +KR EV
Sbjct: 287 KSIRY--KVMDILKSHDQFDEKKKKRVHVEV 315
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 26.5 bits (58), Expect = 4.0
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 52 LEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQKNLARRG 104
+ + RA ++ A+ A+ ++G + ++ +V ++ AV ++ RR
Sbjct: 167 MRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNVDVASLEVAVLDQSRPRRA 219
>1yqw_Q Periplasmic [NIFE] hydrogenase large subunit; NI-Fe hydrogenase
unready state, oxidoreductase; 1.83A {Desulfovibrio
fructosovorans} PDB: 1yrq_H 3h3x_Q 3cus_Q 3cur_H 1frf_L
Length = 549
Score = 26.7 bits (58), Expect = 4.0
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 1/61 (1%)
Query: 83 RYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWGDEERKRK 142
EV+ I A + L + A I G+ GG ++ + ++
Sbjct: 192 YLPPEVNLIATAHYLEALHMQVKAASAMA-ILGGKNPHTQFTVVGGCSNYQGLTKDPLAN 250
Query: 143 V 143
Sbjct: 251 Y 251
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 25.6 bits (57), Expect = 4.5
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 43 ADLRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97
++LR + LE L++ + +LE +L+E K + Q + ++E + Q
Sbjct: 41 SELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQ 95
>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase
(aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.3 d.81.1.1
Length = 332
Score = 26.3 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 44 DLRCELPKLEKRLRATMERVKALETALKEAKEGAMK 79
DL + K T+E V A +KEA EG +K
Sbjct: 242 DLTVLVEK-----ETTVEEVNA---VMKEATEGRLK 269
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 26.2 bits (57), Expect = 5.5
Identities = 12/78 (15%), Positives = 32/78 (41%)
Query: 17 QRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETALKEAKEG 76
+++ + L + ++ + + + +E R + E+++ E LKEAK
Sbjct: 95 FEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154
Query: 77 AMKDRKRYQYEVDRIKEA 94
A ++Y+ ++
Sbjct: 155 AEDADRKYEEVARKLVII 172
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 26.0 bits (58), Expect = 5.8
Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 2 KFSGNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATM 60
S E++ D +L ++ I + E ++ + +D + R RLR
Sbjct: 61 SVSMPENKTDALNLCEKFSIPYTEYSIAPYDAIFSSHFKDASLTRKG--NFCARLRMAF 117
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Length = 450
Score = 26.2 bits (57), Expect = 6.4
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 80 DRKRYQYEVDRIKEAVRQ--KNLARRGP 105
DR RY + + AV + L
Sbjct: 355 DRIRYYWPHPKAAAAVDELMSLLDGVAI 382
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD,
LEFT-handed parallel beta helix, acyl carrier protein,
antibiotic resistance; 2.60A {Escherichia coli}
Length = 341
Score = 25.6 bits (57), Expect = 6.6
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 35 HKQLVRDNADLRCELPKLEKRLRATMERVKALE 67
+K + A + + + KRL++ +V +
Sbjct: 310 NKVWRKTAALVM-NIDDMSKRLKSLERKVNQQD 341
>3kyh_C MRNA-capping enzyme subunit alpha; 5' modification, triphosphatase,
guanylyltransferase, complex, hydrolase, mRNA
processing, nucleus; 3.00A {Saccharomyces cerevisiae}
Length = 461
Score = 25.9 bits (55), Expect = 6.8
Identities = 7/50 (14%), Positives = 12/50 (24%)
Query: 89 DRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPRWGDEE 138
E P P ++ P P++ DE+
Sbjct: 408 RCWDERRANMAGGSGRPLPSQSQNATLSTSKPVHSQPPSNDKEPKYVDED 457
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI,
protein structure initiative, NEW research center for
structural genomics; 2.25A {Escherichia coli} SCOP:
c.1.10.7
Length = 420
Score = 25.8 bits (56), Expect = 7.7
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 80 DRKRYQYEVDRIKEAVRQ--KNLARRGP 105
DR RY + RIK +V NL
Sbjct: 347 DRIRYYWPHSRIKNSVETMMVNLQGVDI 374
>3t8i_A Purine nucleosidase, (IUNH-2); purine nucleoside hydrolase,
thermostable protein, open (ALP structure, rossmann
fold, NH-fold; 1.80A {Sulfolobus solfataricus}
Length = 306
Score = 25.6 bits (57), Expect = 7.9
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 140 KRKVIMGGGATRG 152
K+ IMGG ++G
Sbjct: 142 KKIWIMGGAFSKG 154
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.133 0.375
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,377,081
Number of extensions: 144242
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 556
Number of HSP's successfully gapped: 105
Length of query: 153
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 68
Effective length of database: 4,328,508
Effective search space: 294338544
Effective search space used: 294338544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.9 bits)