RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5720
         (153 letters)



>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha, AccA {Escherichia coli
           [TaxId: 562]}
          Length = 316

 Score = 28.9 bits (64), Expect = 0.22
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 9/138 (6%)

Query: 19  QKISFLENNLDQLTKVHKQLVRDNADLRCELPKLEKRLRATMERVKALETA---LKEAKE 75
           Q I+ LE  +D LT   +Q  + + ++  E+ +L ++      ++ A   A    + A+ 
Sbjct: 7   QPIAELEAKIDSLTAGSRQDEKLDINIDEEVHRLREKSVELTRKIFADLGAWQIAQLARH 66

Query: 76  GAMKDRKRYQYEVDRIKEAVRQKNLARRGPAPQIAKPIRAGQPVVPPVIRPGGVTSPR-- 133
                   Y        + +          A         G+PV+    + G  T  +  
Sbjct: 67  PQRPYTLDYVRLAFDEFDELAGDRAYADDKAIVGGIARLDGRPVMIIGHQKGRETKEKIR 126

Query: 134 ----WGDEERKRKVIMGG 147
                   E  RK +   
Sbjct: 127 RNFGMPAPEGYRKALRLM 144


>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
           reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
          Length = 160

 Score = 27.2 bits (59), Expect = 0.61
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 47  CELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV 88
           C L  +EK +   M  + A E       +  +K  +++  EV
Sbjct: 118 CGLKGMEKGIDDIMVSLAAAEGIDWIEYKRQLKKAEQWNVEV 159


>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
           reductase) {Maize (Zea mays), root isoform [TaxId:
           4577]}
          Length = 154

 Score = 26.8 bits (58), Expect = 0.99
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 47  CELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV 88
           C L  +   ++ T+++V        + K   +K  K++  EV
Sbjct: 112 CGLKGMMPGIQDTLKKVAERRGESWDQKLAQLKKNKQWHVEV 153


>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
           reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
           [TaxId: 1167]}
          Length = 162

 Score = 26.1 bits (56), Expect = 1.7
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 47  CELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEV 88
           C  P +E+ + A +    A E       +  +K   R+  E 
Sbjct: 120 CGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLKKAGRWHVET 161


>d1hx1b_ a.7.7.1 (B:) BAG-family molecular chaperon regulator-1,
           BAG1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 112

 Score = 25.2 bits (55), Expect = 2.5
 Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 14/104 (13%)

Query: 5   GNESEDDGGSLAQRQKISFLENNLDQLTKVHKQLVR-----DNADLRCE-LPKLEKRLRA 58
           GN  +++      +     +E   DQL +++K+L          DL+ E L KL++R++A
Sbjct: 1   GNSPQEEVELKKLKHLEKSVEKIADQLEELNKELTGIQQGFLPKDLQAEALCKLDRRVKA 60

Query: 59  TMER-VKALET----ALKEAKEGAMKDRKRYQYEVDRIKEAVRQ 97
           T+E+ +K LE      L E  + +   RK     V +++  + +
Sbjct: 61  TIEQFMKILEEIDTLILPENFKDSRLKRKGL---VKKVQAFLAE 101


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 25.6 bits (55), Expect = 2.6
 Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 45 LRCELPKLEKRLRATMERVKALETALKEAKEGAMKDRKRYQYEVDRIKEAVR 96
          LR    +L +        ++  +  L ++      +RK     V  ++  +R
Sbjct: 1  LRQRTEELLRCNEQQAAELETCKEQLFQSN----MERKELHNTVMDLRGNIR 48


>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
           FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 165

 Score = 25.1 bits (54), Expect = 3.2
 Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 34  VHKQLVRDNADLR-CELPKLEKRLRATMERVKALETALKEAKEGA----MKDRKRYQYEV 88
           V++ L      +  C    +   +   ++R+   +  L E   G     ++D  RY  ++
Sbjct: 103 VYRALKEQGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEEDAGVFISRLRDDNRYHEDI 162


>d2j5ya1 a.8.1.2 (A:1-53) PAB {Peptostreptococcus magnus [TaxId:
          1260]}
          Length = 53

 Score = 22.6 bits (48), Expect = 7.7
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 4/32 (12%)

Query: 67 ETALKEAKEGAMKDRKRY----QYEVDRIKEA 94
          +  LK AKE A+ + K+      +  + I +A
Sbjct: 4  QWLLKNAKEDAIAELKKAGITSDFYFNAINKA 35


>d2fiqa1 c.1.10.7 (A:1-420) Putative tagatose 6-phosphate kinase 1
           GatZ {Escherichia coli [TaxId: 562]}
          Length = 420

 Score = 24.0 bits (52), Expect = 9.3
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 80  DRKRYQYEVDRIKEAVRQ--KNLARRG-PAPQIAK 111
           DR RY +   RIK +V     NL     P   I++
Sbjct: 347 DRIRYYWPHSRIKNSVETMMVNLQGVDIPLGMISQ 381


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0649    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 560,855
Number of extensions: 25875
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 22
Length of query: 153
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 75
Effective length of database: 1,336,656
Effective search space: 100249200
Effective search space used: 100249200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 49 (22.8 bits)