BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5721
(290 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 75/79 (94%), Positives = 77/79 (97%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKSTLDF
Sbjct: 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326
Query: 68 GRRAKTIKNVVTVNEELTA 86
GRRAKT+KNVV VNEELTA
Sbjct: 327 GRRAKTVKNVVCVNEELTA 345
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 6 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 65
Query: 68 GRRAKTIKNVVTVNEELTA 86
G+RAKTIKN V+VN ELTA
Sbjct: 66 GQRAKTIKNTVSVNLELTA 84
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G KTH+PYRDSK+TRILQ+SL GN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 10 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMF 69
Query: 68 GRRAKTIKNVVTVNEELTA 86
G+RAKTIKN V+VN ELTA
Sbjct: 70 GQRAKTIKNTVSVNLELTA 88
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68 GRRAKTIKNVVTVNEELTA 86
G+RAKTIKN V VN ELTA
Sbjct: 319 GQRAKTIKNTVCVNVELTA 337
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 128 bits (322), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68 GRRAKTIKNVVTVNEELTA 86
G+RAKTIKN V VN ELTA
Sbjct: 319 GQRAKTIKNTVCVNVELTA 337
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 114 bits (286), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 65/78 (83%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL VI+AL DG +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 264 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 323
Query: 68 GRRAKTIKNVVTVNEELT 85
G RAK+IKN VN EL+
Sbjct: 324 GMRAKSIKNKAKVNAELS 341
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/67 (79%), Positives = 63/67 (94%), Gaps = 1/67 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G+ T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68 GRRAKTI 74
G+RAKTI
Sbjct: 319 GQRAKTI 325
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 58/80 (72%)
Query: 4 FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
+ AL NVISAL DG THIPYRDSKLTR+LQ+SLGGNA+T ++ PAS+N ET +
Sbjct: 283 LSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLT 342
Query: 64 TLDFGRRAKTIKNVVTVNEE 83
TL + RAK IKN VNE+
Sbjct: 343 TLRYANRAKNIKNKPRVNED 362
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/80 (57%), Positives = 56/80 (70%)
Query: 4 FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
+ AL NVI+ALA THIPYRDSKLTR+LQ+SLGGNA+T ++ PAS + E+ S
Sbjct: 307 LSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLS 366
Query: 64 TLDFGRRAKTIKNVVTVNEE 83
TL F RAK IKN VNE+
Sbjct: 367 TLRFANRAKNIKNKPRVNED 386
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 4 FACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
+ AL VIS L +G THIPYRDSKLTR+LQ+SLGGN++T + SPAS N ET S
Sbjct: 266 LSLSALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMS 324
Query: 64 TLDFGRRAKTIKNVVTVNEE 83
TL + RAK IKN +NE+
Sbjct: 325 TLRYADRAKQIKNKPRINED 344
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 8 ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL NVISAL D + +HIPYRDSK+TRIL++SLGGNA+T +I C SP+S + ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337
Query: 66 DFGRRAK 72
++ RA+
Sbjct: 338 NYASRAQ 344
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/76 (56%), Positives = 53/76 (69%), Gaps = 1/76 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69 RRAKTIKNVVTVNEEL 84
RAK I N VN++L
Sbjct: 354 HRAKNILNKPEVNQKL 369
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69 RRAKTIKNVVTVNE 82
RAK I N VN+
Sbjct: 354 HRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 297 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 355
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 356 HRAKNILNKPEVNQK 370
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 294 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 352
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 353 HRAKNILNKPEVNQK 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 354 HRAKNILNKPEVNQK 368
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 354 HRAKNILNKPEVNQK 368
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 295 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 353
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 354 HRAKNILNKPEVNQK 368
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 286 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 344
Query: 69 RRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 345 HRAKNILNKPEVNQK 359
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 8 ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL NVISAL D + ++IPYRDSK+TRIL++SLGGNA+T +I C SP+S + ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSNIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337
Query: 66 DFGRRAK 72
++ RA+
Sbjct: 338 NYASRAQ 344
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL D H+PYR+SKLTR+LQESLGG +T+II SP + ET STL++
Sbjct: 297 LGRVITALVD-RAPHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYA 355
Query: 69 RRAKTIKNVVTVNEELT 85
RAK I+N VN++LT
Sbjct: 356 HRAKNIQNKPEVNQKLT 372
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/89 (49%), Positives = 55/89 (61%), Gaps = 11/89 (12%)
Query: 9 LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
L VISALA+ + IPYRDS LT +L+E+LGGN+RT ++ SPA N
Sbjct: 294 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 353
Query: 58 ESETKSTLDFGRRAKTIKNVVTVNEELTA 86
ET STL + RAK I+N V+VN ELTA
Sbjct: 354 YDETLSTLRYADRAKQIRNTVSVNLELTA 382
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 280 LGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYA 338
Query: 69 RRAKTIKN 76
RAK I N
Sbjct: 339 HRAKNILN 346
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 8 ALRNVISALADGNKT--HIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL NVI+ALAD + HIPYR+SKLTR+L++SLGGN +T +I SP+S +T +TL
Sbjct: 287 ALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTL 346
Query: 66 DFGRRAKTI 74
+ RAK I
Sbjct: 347 KYANRAKDI 355
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 5 ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
+ AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + + SPA N ET ++
Sbjct: 259 SLSALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNS 317
Query: 65 LDFGRRAKTIKN 76
L + R ++I N
Sbjct: 318 LTYASRVRSIVN 329
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 9 LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
L VISALA+ + IPYRDS LT +L+E+LGGN+RT ++ SPA N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58 ESETKSTLDFGRRAKTIKNVVTVNEE 83
ET STL + RAK I+N V+VN
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVNHH 363
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 11/86 (12%)
Query: 9 LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
L VISALA+ + IPYRDS LT +L+E+LGGN+RT ++ SPA N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58 ESETKSTLDFGRRAKTIKNVVTVNEE 83
ET STL + RAK I+N V+VN
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVNHH 363
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 51/84 (60%), Gaps = 11/84 (13%)
Query: 9 LRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFN 57
L VISALA+ + IPYRDS LT +L+E+LGGN+RT ++ SPA N
Sbjct: 278 LGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADIN 337
Query: 58 ESETKSTLDFGRRAKTIKNVVTVN 81
ET STL + RAK I+N V+VN
Sbjct: 338 YDETLSTLRYADRAKQIRNTVSVN 361
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 5 ACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKST 64
+ AL +VI AL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + + SPA N ET ++
Sbjct: 267 SLSALGDVIGALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNS 325
Query: 65 LDFGRRAKTIKN 76
L + R +TI N
Sbjct: 326 LLYASRVRTIVN 337
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 47/75 (62%), Gaps = 3/75 (4%)
Query: 9 LRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L VI L+DG I YRDSKLTRILQ SLGGNA+T II +P SF+ ET + L F
Sbjct: 264 LGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQF 321
Query: 68 GRRAKTIKNVVTVNE 82
AK +KN VNE
Sbjct: 322 ASTAKYMKNTPYVNE 336
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 12 VISALAD----GNKT-HIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
VISALAD NK +PYRDS LT +L++SLGGN++T ++ SPA+ N ET STL
Sbjct: 283 VISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLR 342
Query: 67 FGRRAK 72
+ RAK
Sbjct: 343 YADRAK 348
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%), Gaps = 2/59 (3%)
Query: 24 IPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNE 82
+PYRDS LT +L++SLGGN++T +I C SP ++ ET STL + +AK I+ VN+
Sbjct: 365 VPYRDSVLTWLLKDSLGGNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL +VI+AL + H+P+R+SKLT +LQ+SL G+++T +++ SP N SET +L F
Sbjct: 263 ALGDVIAALRS-RQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKF 321
Query: 68 GRRAKTIK 75
R ++++
Sbjct: 322 AERVRSVE 329
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 4/83 (4%)
Query: 2 NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESET 61
++F G V+ AL G +PYRDSKLTR+LQ+SLGG+A + +I +P +T
Sbjct: 279 SLFVLG---KVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDT 334
Query: 62 KSTLDFGRRAKTIKNVVTVNEEL 84
S L+F R+K + N NE L
Sbjct: 335 VSALNFAARSKEVINRPFTNESL 357
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 5 ACGALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
+ AL +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET
Sbjct: 326 SLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETL 385
Query: 63 STLDFGRRAKTIK 75
++L F + + +
Sbjct: 386 NSLRFASKVNSTR 398
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 8 ALRNVISAL--ADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL DG K HIP+R+SKLT +LQ SL G+++T + + SPA+ + +ET ++L
Sbjct: 297 CLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETINSL 356
Query: 66 DFGRRAKTIKNV 77
F + K +
Sbjct: 357 RFASKVNNTKMI 368
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
++ V+ ++A G+ T IPYRDS LT +LQ SL + T + C SP + SET STL F
Sbjct: 270 SINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 68 GRRAKTIK 75
G AK ++
Sbjct: 329 GTSAKKLR 336
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L +VI +L + +H+PYR+SKLT +L+ SLGGN++T + + SP + + +ET ++L F
Sbjct: 646 LGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFA 705
Query: 69 RRA 71
+
Sbjct: 706 TKV 708
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
++ V+ ++A G+ T IPYRDS LT +LQ SL + T + C SP + SET STL F
Sbjct: 270 SINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 68 GRRAK 72
G AK
Sbjct: 329 GTSAK 333
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 284 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 343
Query: 66 DFGRRAKTIK 75
F + + +
Sbjct: 344 RFASKVNSTR 353
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 272 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 331
Query: 66 DFGRRAKTIK 75
F + + +
Sbjct: 332 RFASKVNSTR 341
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66 DFGRRAKTIK 75
F + + +
Sbjct: 333 RFASKVNSTR 342
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66 DFGRRAKTIK 75
F + + +
Sbjct: 333 RFASKVNSTR 342
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66 DFGRRAKTIK 75
F + + +
Sbjct: 333 RFASKVNSTR 342
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 12 VISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
VI AL++ ++H+PYR+SKLT +LQ SLGG+A+ + + SP N SE+ ++L F
Sbjct: 315 VIMALSN-KESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L NVI AL + HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 315 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 69 RRAKTIK 75
+ K
Sbjct: 374 ASVNSCK 380
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L NVI AL + HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 318 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 376
Query: 69 RRAKTIK 75
+ K
Sbjct: 377 ASVNSCK 383
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L NVI AL + HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 312 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 370
Query: 69 RRAKTIK 75
+ K
Sbjct: 371 ASVNSCK 377
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L NVI AL + HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 315 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 373
Query: 69 RRAKTIK 75
+ K
Sbjct: 374 ASVNSCK 380
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L NVI AL + HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 326 LTNVILALLQ-KQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFA 384
Query: 69 RRAKTIK 75
+ K
Sbjct: 385 ASVNSCK 391
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 9 LRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFG 68
L I AL D + HIP+R KLT L++SLGGN ++ + ET S+L F
Sbjct: 294 LEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFA 353
Query: 69 RRAKTI 74
R K +
Sbjct: 354 SRMKLV 359
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 336 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 394
Query: 67 FGRRAKTI 74
+ R K +
Sbjct: 395 YADRVKEL 402
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 316 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLR 374
Query: 67 FGRRAKTI 74
+ R K +
Sbjct: 375 YADRVKEL 382
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 264 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 322
Query: 67 FGRRAK 72
+ R K
Sbjct: 323 YADRVK 328
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 5 ACGALRNVISAL--ADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
+ L +VI AL D K +IP+R+SKLT +LQ SL G+++T + + P + SET
Sbjct: 273 SLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETL 332
Query: 63 STLDFGRRAKTIK 75
++L F + + K
Sbjct: 333 NSLRFASKVNSTK 345
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 354 ALKECIRALGR-NKPHTPFRASKLTQVLRDSFIGENSRTCMIATISPGMASCENTLNTLR 412
Query: 67 FGRRAKTI 74
+ R K +
Sbjct: 413 YANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL+ I A+ D +K HIP+RDS+LT++L++ G +++ +I SP +T +TL +
Sbjct: 266 ALKECIRAM-DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324
Query: 68 GRRAK 72
R K
Sbjct: 325 SSRVK 329
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 21/88 (23%)
Query: 2 NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLG-----GNARTTIIICCSPASF 56
+I A G +RNVI+AL+D +S LT++ Q G G++ ++I
Sbjct: 51 DIPAPGDIRNVIAALSD--------SESILTQLFQYRFGENQVDGHSLGNLVIA------ 96
Query: 57 NESETKSTLDFGRRAKTIKNVVTVNEEL 84
T T DFG K + V+ + ++
Sbjct: 97 --GXTNITNDFGHAIKELSKVLNIKGQV 122
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 21 KTHIPYRDS--KLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74
K I +++S L + L+E L + R+ +I S SF +T DFG ++I
Sbjct: 51 KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSI 106
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 21 KTHIPYRDS--KLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74
K I +++S L + L+E L + R+ +I S SF +T DFG ++I
Sbjct: 51 KDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKRSI 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,670,924
Number of Sequences: 62578
Number of extensions: 210420
Number of successful extensions: 735
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 666
Number of HSP's gapped (non-prelim): 70
length of query: 290
length of database: 14,973,337
effective HSP length: 98
effective length of query: 192
effective length of database: 8,840,693
effective search space: 1697413056
effective search space used: 1697413056
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.3 bits)