Query psy5721
Match_columns 290
No_of_seqs 212 out of 1516
Neff 7.0
Searched_HMMs 46136
Date Sat Aug 17 00:55:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5721.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5721hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0240|consensus 100.0 9.4E-42 2E-46 328.6 21.4 247 1-259 258-504 (607)
2 KOG0243|consensus 100.0 1.5E-31 3.3E-36 273.7 23.4 113 1-124 318-430 (1041)
3 KOG4280|consensus 100.0 4.6E-29 1E-33 245.3 8.4 108 1-119 263-370 (574)
4 KOG0245|consensus 99.9 1.4E-27 3E-32 241.8 13.0 104 2-116 270-379 (1221)
5 PLN03188 kinesin-12 family pro 99.9 7.6E-26 1.7E-30 234.5 9.3 86 1-86 357-446 (1320)
6 KOG0242|consensus 99.9 5E-25 1.1E-29 223.2 8.6 93 1-93 257-350 (675)
7 KOG0241|consensus 99.9 2.6E-24 5.5E-29 215.9 12.6 104 2-116 274-382 (1714)
8 KOG0244|consensus 99.9 5.5E-23 1.2E-27 208.3 16.3 85 2-86 244-329 (913)
9 KOG0247|consensus 99.9 3E-22 6.6E-27 198.3 17.7 82 2-83 360-445 (809)
10 cd01364 KISc_BimC_Eg5 Kinesin 99.9 5.7E-23 1.2E-27 195.0 6.6 81 1-82 271-351 (352)
11 cd01373 KISc_KLP2_like Kinesin 99.9 6E-23 1.3E-27 194.0 6.4 74 1-74 261-337 (337)
12 cd01370 KISc_KIP3_like Kinesin 99.9 1.7E-22 3.7E-27 191.0 6.1 74 1-74 263-338 (338)
13 cd01365 KISc_KIF1A_KIF1B Kines 99.9 3.9E-22 8.4E-27 189.7 6.2 81 1-81 269-356 (356)
14 cd01368 KISc_KIF23_like Kinesi 99.8 7.7E-22 1.7E-26 187.0 5.9 72 1-72 269-345 (345)
15 cd01369 KISc_KHC_KIF5 Kinesin 99.8 1.5E-21 3.3E-26 183.4 6.0 74 1-74 252-325 (325)
16 cd01376 KISc_KID_like Kinesin 99.8 1.7E-21 3.8E-26 182.7 6.0 71 1-72 249-319 (319)
17 cd01371 KISc_KIF3 Kinesin moto 99.8 2.3E-21 5.1E-26 182.8 6.4 74 1-74 260-333 (333)
18 cd01367 KISc_KIF2_like Kinesin 99.8 2E-21 4.3E-26 182.6 5.8 71 1-72 252-322 (322)
19 cd01372 KISc_KIF4 Kinesin moto 99.8 5.7E-21 1.2E-25 180.5 6.0 75 1-75 265-341 (341)
20 cd01374 KISc_CENP_E Kinesin mo 99.8 7.5E-21 1.6E-25 178.5 6.3 74 1-74 247-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 99.8 7.4E-21 1.6E-25 179.5 5.9 72 1-72 263-334 (334)
22 KOG0246|consensus 99.8 1.5E-20 3.3E-25 182.0 5.4 77 2-79 469-546 (676)
23 cd01366 KISc_C_terminal Kinesi 99.8 2.3E-20 5E-25 175.6 6.0 75 1-76 254-328 (329)
24 PF00225 Kinesin: Kinesin moto 99.8 1.7E-20 3.6E-25 176.6 4.7 74 1-74 261-335 (335)
25 smart00129 KISc Kinesin motor, 99.8 4E-20 8.6E-25 174.3 6.6 81 1-81 254-335 (335)
26 COG5059 KIP1 Kinesin-like prot 99.8 1.6E-18 3.4E-23 173.9 15.3 106 1-106 262-372 (568)
27 KOG0239|consensus 99.8 3E-19 6.6E-24 180.8 4.4 79 1-80 568-646 (670)
28 cd00106 KISc Kinesin motor dom 99.7 1.2E-18 2.7E-23 163.5 6.1 72 1-72 256-328 (328)
29 PRK11637 AmiB activator; Provi 96.5 0.051 1.1E-06 53.2 13.4 88 174-261 45-132 (428)
30 PHA02562 46 endonuclease subun 96.4 0.23 4.9E-06 49.9 17.7 90 170-259 307-399 (562)
31 PRK11637 AmiB activator; Provi 95.8 0.26 5.6E-06 48.2 14.4 90 167-256 45-134 (428)
32 PF06005 DUF904: Protein of un 95.8 0.34 7.5E-06 35.8 11.4 67 184-250 5-71 (72)
33 PF12329 TMF_DNA_bd: TATA elem 95.8 0.22 4.8E-06 36.9 10.5 70 180-249 2-71 (74)
34 PF09789 DUF2353: Uncharacteri 95.8 1.5 3.2E-05 41.5 18.3 58 213-270 191-250 (319)
35 PRK10884 SH3 domain-containing 95.5 0.39 8.5E-06 42.6 12.7 72 170-244 94-165 (206)
36 PF00038 Filament: Intermediat 95.3 2.4 5.2E-05 39.4 18.5 33 88-120 8-40 (312)
37 KOG0971|consensus 95.3 1.7 3.6E-05 46.1 18.0 20 99-118 333-352 (1243)
38 PRK09039 hypothetical protein; 95.2 0.83 1.8E-05 43.6 14.8 64 175-238 122-185 (343)
39 KOG0971|consensus 95.1 0.6 1.3E-05 49.3 14.5 93 166-258 266-358 (1243)
40 COG1579 Zn-ribbon protein, pos 95.1 2.4 5.3E-05 38.5 16.9 93 170-265 97-189 (239)
41 PF10174 Cast: RIM-binding pro 95.1 1.9 4.1E-05 45.5 18.3 135 97-260 237-371 (775)
42 PF09726 Macoilin: Transmembra 95.1 1.9 4E-05 45.1 18.1 37 168-204 544-580 (697)
43 PF11559 ADIP: Afadin- and alp 95.0 1.5 3.3E-05 36.6 14.5 86 172-257 48-133 (151)
44 PF08614 ATG16: Autophagy prot 95.0 0.46 1E-05 41.5 11.7 83 175-257 101-183 (194)
45 PF10473 CENP-F_leu_zip: Leuci 95.0 1.6 3.4E-05 36.4 14.2 59 201-259 42-100 (140)
46 PF12718 Tropomyosin_1: Tropom 94.9 1.4 3.1E-05 36.7 14.0 42 220-261 75-116 (143)
47 PF04849 HAP1_N: HAP1 N-termin 94.9 2 4.3E-05 40.4 15.9 53 176-228 213-265 (306)
48 KOG1853|consensus 94.8 3.1 6.7E-05 38.0 17.1 88 171-258 79-166 (333)
49 PRK10884 SH3 domain-containing 94.8 0.84 1.8E-05 40.5 12.8 99 173-276 90-188 (206)
50 PF14662 CCDC155: Coiled-coil 94.8 2.6 5.7E-05 36.9 17.8 73 189-261 66-138 (193)
51 PF09738 DUF2051: Double stran 94.8 0.82 1.8E-05 42.9 13.3 86 170-255 85-170 (302)
52 PF12325 TMF_TATA_bd: TATA ele 94.7 1.2 2.6E-05 36.2 12.4 34 180-213 20-53 (120)
53 KOG0977|consensus 94.6 1.9 4.1E-05 43.6 16.1 36 88-123 46-81 (546)
54 TIGR02169 SMC_prok_A chromosom 94.5 2.3 5E-05 46.2 18.2 19 93-111 260-278 (1164)
55 PF04111 APG6: Autophagy prote 94.5 1.5 3.3E-05 41.3 14.6 88 172-259 46-133 (314)
56 PF07888 CALCOCO1: Calcium bin 94.4 1.4 3.1E-05 44.4 14.8 17 229-245 210-226 (546)
57 PF10212 TTKRSYEDQ: Predicted 94.4 6.3 0.00014 39.6 20.7 90 170-259 414-514 (518)
58 PF08614 ATG16: Autophagy prot 94.3 1.2 2.5E-05 39.0 12.5 77 172-248 105-181 (194)
59 TIGR02169 SMC_prok_A chromosom 94.2 3.2 7E-05 45.1 18.3 30 230-259 460-489 (1164)
60 PF10473 CENP-F_leu_zip: Leuci 94.2 2.9 6.2E-05 34.9 14.1 80 171-250 19-98 (140)
61 PF04849 HAP1_N: HAP1 N-termin 94.0 4.1 9E-05 38.3 16.0 32 203-234 226-257 (306)
62 KOG0250|consensus 93.9 2.2 4.7E-05 46.1 15.5 79 181-259 370-449 (1074)
63 PF04111 APG6: Autophagy prote 93.9 1.9 4.2E-05 40.6 13.9 87 167-253 48-134 (314)
64 PF04156 IncA: IncA protein; 93.9 3.2 7E-05 35.7 14.4 80 175-254 94-180 (191)
65 KOG0999|consensus 93.8 4.3 9.2E-05 41.0 16.3 60 201-260 153-222 (772)
66 COG1579 Zn-ribbon protein, pos 93.7 2.2 4.9E-05 38.7 13.4 14 191-204 60-73 (239)
67 KOG0977|consensus 93.7 2.9 6.4E-05 42.2 15.3 83 170-252 107-196 (546)
68 PF08317 Spc7: Spc7 kinetochor 93.5 2.6 5.7E-05 39.8 14.2 53 200-252 212-264 (325)
69 PRK09039 hypothetical protein; 93.5 1.9 4.2E-05 41.2 13.3 17 49-68 13-29 (343)
70 PF07888 CALCOCO1: Calcium bin 93.3 2.9 6.4E-05 42.2 14.6 58 187-244 175-232 (546)
71 TIGR02168 SMC_prok_B chromosom 93.0 4.2 9E-05 44.1 16.6 10 100-109 686-695 (1179)
72 TIGR02168 SMC_prok_B chromosom 92.9 4.3 9.2E-05 44.0 16.6 15 237-251 829-843 (1179)
73 PF08317 Spc7: Spc7 kinetochor 92.9 3.7 8E-05 38.8 14.3 59 206-264 211-269 (325)
74 COG2433 Uncharacterized conser 92.9 2.9 6.3E-05 42.6 13.8 81 172-252 425-508 (652)
75 PF05266 DUF724: Protein of un 92.7 4.2 9E-05 35.7 13.2 81 172-252 106-186 (190)
76 PF13851 GAS: Growth-arrest sp 92.7 3.1 6.7E-05 36.7 12.5 50 217-266 92-141 (201)
77 PF06005 DUF904: Protein of un 92.5 3 6.4E-05 30.8 10.2 52 200-251 7-58 (72)
78 PF09730 BicD: Microtubule-ass 92.5 3.3 7.2E-05 43.3 14.1 38 175-212 54-91 (717)
79 PF09726 Macoilin: Transmembra 92.4 6.9 0.00015 41.0 16.4 33 217-249 544-576 (697)
80 COG4942 Membrane-bound metallo 92.3 3.6 7.8E-05 40.3 13.4 86 176-261 38-127 (420)
81 PHA02562 46 endonuclease subun 92.3 3.3 7.1E-05 41.6 13.7 67 184-250 338-404 (562)
82 PRK02224 chromosome segregatio 91.6 18 0.00039 38.6 19.0 13 173-185 318-330 (880)
83 KOG1962|consensus 91.6 2.6 5.6E-05 37.6 10.6 77 173-249 131-210 (216)
84 PF10186 Atg14: UV radiation r 91.5 8.3 0.00018 35.1 14.6 85 168-252 62-146 (302)
85 PF08647 BRE1: BRE1 E3 ubiquit 91.4 5.5 0.00012 30.9 14.0 93 169-261 3-95 (96)
86 KOG0995|consensus 91.3 18 0.0004 36.7 18.1 72 171-242 289-363 (581)
87 KOG0250|consensus 91.3 19 0.00041 39.2 18.2 68 191-258 395-462 (1074)
88 KOG0804|consensus 91.2 5.6 0.00012 39.1 13.2 26 234-259 430-455 (493)
89 COG2433 Uncharacterized conser 91.2 4.4 9.5E-05 41.3 12.9 84 172-259 418-501 (652)
90 PF00038 Filament: Intermediat 91.2 13 0.00027 34.5 17.7 65 191-255 210-278 (312)
91 COG1196 Smc Chromosome segrega 91.1 8.9 0.00019 42.5 16.5 11 8-18 553-563 (1163)
92 PRK04778 septation ring format 91.0 2.5 5.5E-05 43.0 11.4 67 213-279 378-444 (569)
93 KOG4673|consensus 90.8 4 8.7E-05 42.2 12.2 32 183-214 446-477 (961)
94 KOG0161|consensus 90.8 9.3 0.0002 44.2 16.4 82 174-255 1060-1141(1930)
95 PF09789 DUF2353: Uncharacteri 90.7 14 0.0003 35.0 15.1 31 167-197 77-107 (319)
96 smart00787 Spc7 Spc7 kinetocho 90.5 10 0.00023 35.7 14.2 55 208-262 208-262 (312)
97 COG3883 Uncharacterized protei 90.5 4.2 9.1E-05 37.4 11.2 64 213-282 68-131 (265)
98 PF13870 DUF4201: Domain of un 90.3 11 0.00023 32.3 20.2 94 169-262 42-135 (177)
99 KOG0161|consensus 90.3 7 0.00015 45.2 14.9 44 169-212 985-1028(1930)
100 TIGR01843 type_I_hlyD type I s 90.3 10 0.00023 36.2 14.6 19 242-260 249-267 (423)
101 PF06785 UPF0242: Uncharacteri 90.2 8.2 0.00018 36.6 12.9 75 178-252 101-175 (401)
102 COG4026 Uncharacterized protei 90.2 4 8.7E-05 36.6 10.4 75 174-248 133-207 (290)
103 PRK15422 septal ring assembly 90.2 6.4 0.00014 29.5 11.2 68 182-249 10-77 (79)
104 PF15290 Syntaphilin: Golgi-lo 90.2 6.4 0.00014 36.4 11.9 36 178-213 70-105 (305)
105 PF14662 CCDC155: Coiled-coil 90.1 12 0.00027 32.7 13.8 50 205-254 68-117 (193)
106 PRK03918 chromosome segregatio 90.1 7.6 0.00017 41.2 14.5 10 50-59 441-450 (880)
107 PF15070 GOLGA2L5: Putative go 89.9 26 0.00057 36.2 19.3 18 88-105 26-43 (617)
108 PF06818 Fez1: Fez1; InterPro 89.8 9.2 0.0002 33.8 12.3 75 184-258 25-106 (202)
109 COG1340 Uncharacterized archae 89.8 17 0.00036 34.0 14.6 59 194-252 183-241 (294)
110 KOG0996|consensus 89.7 5.1 0.00011 43.7 12.5 42 217-258 976-1017(1293)
111 KOG0976|consensus 89.6 4.1 9E-05 42.8 11.3 29 237-265 415-443 (1265)
112 PF09304 Cortex-I_coil: Cortex 89.5 8.1 0.00018 30.7 10.5 33 223-255 42-74 (107)
113 KOG0243|consensus 89.4 25 0.00055 38.2 17.3 83 170-252 477-559 (1041)
114 PF07851 TMPIT: TMPIT-like pro 89.3 6.2 0.00013 37.5 11.6 40 236-276 65-104 (330)
115 PRK03918 chromosome segregatio 89.2 10 0.00022 40.2 14.8 11 22-32 436-446 (880)
116 PF08581 Tup_N: Tup N-terminal 89.2 7.8 0.00017 29.1 12.0 54 179-235 21-74 (79)
117 smart00787 Spc7 Spc7 kinetocho 89.1 15 0.00033 34.6 14.2 56 198-253 205-260 (312)
118 PRK02224 chromosome segregatio 89.0 21 0.00045 38.1 16.9 13 241-253 414-426 (880)
119 PF10205 KLRAQ: Predicted coil 89.0 9.7 0.00021 30.0 11.2 57 200-256 15-71 (102)
120 KOG4005|consensus 88.9 2.9 6.3E-05 37.7 8.6 57 202-258 88-144 (292)
121 PF09730 BicD: Microtubule-ass 88.9 8.8 0.00019 40.2 13.4 83 177-259 28-110 (717)
122 PRK09343 prefoldin subunit bet 88.9 11 0.00024 30.4 13.6 49 219-267 72-120 (121)
123 KOG4657|consensus 88.6 18 0.00039 32.6 13.7 74 171-244 39-119 (246)
124 COG4942 Membrane-bound metallo 88.6 6.5 0.00014 38.5 11.5 96 170-265 39-134 (420)
125 KOG2010|consensus 88.5 4.5 9.8E-05 38.2 9.9 85 173-257 123-207 (405)
126 PF11932 DUF3450: Protein of u 88.4 17 0.00036 32.9 13.6 25 189-213 62-86 (251)
127 PF00261 Tropomyosin: Tropomyo 88.3 19 0.0004 32.4 14.5 56 200-255 179-234 (237)
128 PRK04863 mukB cell division pr 88.3 29 0.00064 39.5 17.9 10 30-39 212-221 (1486)
129 PF09755 DUF2046: Uncharacteri 88.3 23 0.00049 33.4 14.4 23 228-250 181-203 (310)
130 PF15619 Lebercilin: Ciliary p 87.9 18 0.00039 31.8 17.7 28 175-202 81-108 (194)
131 PF12128 DUF3584: Protein of u 87.9 12 0.00025 41.7 14.4 66 218-284 490-559 (1201)
132 PF11544 Spc42p: Spindle pole 87.7 9.6 0.00021 28.4 9.6 45 175-219 4-48 (76)
133 TIGR01843 type_I_hlyD type I s 87.7 20 0.00044 34.1 14.6 35 234-269 248-282 (423)
134 PF10168 Nup88: Nuclear pore c 87.6 16 0.00034 38.5 14.4 32 230-261 637-668 (717)
135 COG1340 Uncharacterized archae 87.5 25 0.00054 32.9 18.2 91 166-256 128-224 (294)
136 PF06818 Fez1: Fez1; InterPro 87.5 11 0.00023 33.4 11.2 85 177-261 11-102 (202)
137 PF15254 CCDC14: Coiled-coil d 87.5 27 0.00058 36.8 15.5 24 93-116 389-412 (861)
138 KOG0964|consensus 87.3 14 0.0003 39.9 13.5 86 173-258 415-500 (1200)
139 PF00261 Tropomyosin: Tropomyo 87.1 22 0.00048 31.9 15.8 25 235-259 172-196 (237)
140 PF14197 Cep57_CLD_2: Centroso 87.0 9.9 0.00021 27.8 10.0 7 179-185 8-14 (69)
141 PF09304 Cortex-I_coil: Cortex 87.0 14 0.0003 29.4 13.0 67 173-239 6-72 (107)
142 PRK04406 hypothetical protein; 86.8 8.8 0.00019 28.5 8.9 30 220-249 27-56 (75)
143 PF11559 ADIP: Afadin- and alp 86.8 17 0.00036 30.2 14.0 20 236-255 130-149 (151)
144 PF06156 DUF972: Protein of un 86.8 6.2 0.00014 31.3 8.6 52 181-246 6-57 (107)
145 PF00769 ERM: Ezrin/radixin/mo 86.7 16 0.00034 33.3 12.4 47 216-262 80-133 (246)
146 PF14197 Cep57_CLD_2: Centroso 86.7 10 0.00022 27.7 9.9 57 191-247 6-62 (69)
147 PF05667 DUF812: Protein of un 86.5 13 0.00029 38.1 13.0 88 175-262 327-431 (594)
148 PRK13169 DNA replication intia 86.4 5.7 0.00012 31.7 8.2 42 180-221 5-46 (110)
149 PF10186 Atg14: UV radiation r 86.4 25 0.00055 31.9 14.5 91 169-259 70-160 (302)
150 PRK13169 DNA replication intia 86.3 6.3 0.00014 31.5 8.3 49 197-245 8-56 (110)
151 TIGR00606 rad50 rad50. This fa 86.1 51 0.0011 37.1 18.3 25 91-115 751-775 (1311)
152 KOG0976|consensus 86.1 15 0.00033 38.8 12.8 81 170-250 121-201 (1265)
153 PF10226 DUF2216: Uncharacteri 86.0 23 0.0005 31.0 14.3 30 184-213 49-78 (195)
154 PF12718 Tropomyosin_1: Tropom 86.0 19 0.00041 30.0 17.6 32 86-117 9-40 (143)
155 COG4026 Uncharacterized protei 85.9 15 0.00033 33.0 11.3 60 192-251 144-203 (290)
156 KOG4360|consensus 85.9 17 0.00036 36.5 12.6 43 191-233 213-255 (596)
157 KOG0996|consensus 85.9 30 0.00066 38.1 15.4 31 87-117 394-424 (1293)
158 PRK02119 hypothetical protein; 85.9 8.3 0.00018 28.4 8.3 43 208-250 13-55 (73)
159 PF07889 DUF1664: Protein of u 85.8 18 0.00039 29.6 12.9 83 170-252 37-123 (126)
160 KOG4673|consensus 85.8 16 0.00036 37.9 12.8 62 173-234 499-560 (961)
161 PF05266 DUF724: Protein of un 85.8 18 0.0004 31.6 11.8 67 173-239 114-180 (190)
162 PRK04778 septation ring format 85.7 44 0.00096 34.1 17.0 78 172-249 351-428 (569)
163 PF10174 Cast: RIM-binding pro 85.7 19 0.00041 38.2 13.8 32 175-206 321-352 (775)
164 PF11932 DUF3450: Protein of u 85.6 27 0.00059 31.5 15.2 55 175-229 41-95 (251)
165 KOG0980|consensus 85.4 57 0.0012 35.0 16.8 21 241-261 542-562 (980)
166 PF10146 zf-C4H2: Zinc finger- 85.3 25 0.00055 31.7 12.8 40 208-247 64-103 (230)
167 COG1382 GimC Prefoldin, chaper 85.2 19 0.0004 29.3 13.3 46 220-265 72-117 (119)
168 KOG0933|consensus 85.2 27 0.00059 37.9 14.5 56 200-255 825-880 (1174)
169 PF06156 DUF972: Protein of un 85.0 8.7 0.00019 30.5 8.6 51 203-253 7-57 (107)
170 PF13851 GAS: Growth-arrest sp 84.9 27 0.00058 30.8 15.3 33 235-267 146-178 (201)
171 PF05667 DUF812: Protein of un 84.8 28 0.00061 35.8 14.3 32 168-199 327-358 (594)
172 PF07106 TBPIP: Tat binding pr 84.6 9.7 0.00021 32.3 9.4 66 167-232 70-137 (169)
173 KOG0933|consensus 84.5 66 0.0014 35.1 18.0 45 195-239 827-871 (1174)
174 KOG2991|consensus 84.4 34 0.00073 31.5 16.2 194 22-255 93-308 (330)
175 TIGR03752 conj_TIGR03752 integ 84.2 22 0.00047 35.5 12.6 83 167-249 57-140 (472)
176 TIGR03319 YmdA_YtgF conserved 83.8 26 0.00057 35.4 13.4 21 191-211 98-118 (514)
177 PF06785 UPF0242: Uncharacteri 83.6 28 0.00061 33.1 12.5 78 182-259 91-175 (401)
178 PF10234 Cluap1: Clusterin-ass 83.3 29 0.00064 32.0 12.4 25 236-260 222-246 (267)
179 PRK02119 hypothetical protein; 83.3 12 0.00026 27.5 8.2 43 202-244 14-56 (73)
180 PF11180 DUF2968: Protein of u 83.2 31 0.00068 30.2 13.2 38 227-264 149-186 (192)
181 COG3074 Uncharacterized protei 83.1 16 0.00035 26.8 10.5 36 206-241 27-62 (79)
182 KOG1962|consensus 82.7 8.7 0.00019 34.3 8.5 60 168-227 150-209 (216)
183 KOG4360|consensus 82.7 57 0.0012 32.9 17.1 94 172-265 208-308 (596)
184 PRK04325 hypothetical protein; 82.7 15 0.00032 27.1 8.5 25 224-248 29-53 (74)
185 PRK01156 chromosome segregatio 82.7 73 0.0016 34.1 18.7 28 172-199 472-499 (895)
186 COG3074 Uncharacterized protei 82.6 17 0.00036 26.7 10.9 60 190-249 18-77 (79)
187 PRK04406 hypothetical protein; 82.3 16 0.00036 27.0 8.6 37 208-244 22-58 (75)
188 PF02403 Seryl_tRNA_N: Seryl-t 82.2 19 0.00042 28.0 9.6 33 221-253 70-102 (108)
189 PF08172 CASP_C: CASP C termin 82.2 40 0.00087 30.8 16.5 32 88-119 3-34 (248)
190 PF15290 Syntaphilin: Golgi-lo 82.1 24 0.00051 32.8 11.1 41 172-212 71-111 (305)
191 PF12325 TMF_TATA_bd: TATA ele 81.9 26 0.00056 28.4 13.7 38 218-255 68-112 (120)
192 PRK10803 tol-pal system protei 81.4 15 0.00032 33.8 9.8 42 212-253 62-103 (263)
193 PF03962 Mnd1: Mnd1 family; I 81.2 33 0.00072 29.9 11.6 92 166-258 59-161 (188)
194 PF10481 CENP-F_N: Cenp-F N-te 81.2 46 0.001 30.9 12.8 28 233-260 103-130 (307)
195 PF00769 ERM: Ezrin/radixin/mo 81.2 43 0.00093 30.4 13.0 83 170-252 48-130 (246)
196 KOG4005|consensus 81.1 15 0.00032 33.3 9.3 68 197-264 90-157 (292)
197 KOG4809|consensus 81.1 32 0.00069 34.9 12.4 74 179-252 334-407 (654)
198 PRK00846 hypothetical protein; 81.0 18 0.00039 27.1 8.4 25 227-251 36-60 (77)
199 KOG4674|consensus 81.0 34 0.00073 39.5 13.9 91 170-260 123-238 (1822)
200 KOG4643|consensus 81.0 87 0.0019 34.2 16.1 31 177-207 489-519 (1195)
201 PRK02793 phi X174 lysis protei 80.8 20 0.00042 26.4 8.5 32 219-250 23-54 (72)
202 PF02183 HALZ: Homeobox associ 80.8 7 0.00015 26.1 5.5 36 212-247 6-41 (45)
203 KOG2129|consensus 80.8 48 0.001 32.6 13.2 61 172-232 161-222 (552)
204 PF14723 SSFA2_C: Sperm-specif 80.7 22 0.00048 30.6 9.8 32 226-257 146-177 (179)
205 KOG0979|consensus 80.7 92 0.002 34.0 16.9 39 223-261 316-354 (1072)
206 PF10168 Nup88: Nuclear pore c 80.6 52 0.0011 34.7 14.6 24 236-259 636-659 (717)
207 COG4467 Regulator of replicati 80.6 5 0.00011 31.9 5.4 43 181-223 6-48 (114)
208 PF15254 CCDC14: Coiled-coil d 80.4 22 0.00048 37.4 11.5 82 170-258 395-488 (861)
209 PF07989 Microtub_assoc: Micro 80.4 21 0.00046 26.4 9.1 29 186-214 3-31 (75)
210 KOG1853|consensus 80.3 48 0.001 30.5 12.4 77 173-252 49-125 (333)
211 PF15070 GOLGA2L5: Putative go 80.2 78 0.0017 32.8 17.6 25 235-259 191-215 (617)
212 KOG0993|consensus 79.9 56 0.0012 32.1 13.3 92 173-264 104-207 (542)
213 KOG0995|consensus 79.9 75 0.0016 32.4 19.1 83 169-251 301-386 (581)
214 PF08581 Tup_N: Tup N-terminal 79.8 23 0.0005 26.6 10.7 71 181-251 2-76 (79)
215 PF10146 zf-C4H2: Zinc finger- 79.8 46 0.001 30.0 14.5 70 185-254 34-103 (230)
216 KOG4657|consensus 79.8 46 0.001 30.0 12.5 69 177-245 59-127 (246)
217 KOG0994|consensus 79.8 17 0.00037 40.0 10.7 86 170-255 1202-1290(1758)
218 PRK04863 mukB cell division pr 79.8 1.2E+02 0.0026 34.8 18.2 10 30-39 196-205 (1486)
219 PF01920 Prefoldin_2: Prefoldi 79.4 26 0.00055 26.8 10.8 36 222-257 66-101 (106)
220 PRK15422 septal ring assembly 79.3 24 0.00052 26.5 10.8 64 185-248 6-69 (79)
221 PF10211 Ax_dynein_light: Axon 79.2 42 0.00092 29.2 13.1 64 186-249 123-187 (189)
222 KOG4674|consensus 79.1 87 0.0019 36.4 16.3 37 170-206 704-740 (1822)
223 PF09755 DUF2046: Uncharacteri 78.8 50 0.0011 31.2 12.4 56 208-263 175-253 (310)
224 KOG3990|consensus 78.6 14 0.00031 33.7 8.4 36 170-205 226-261 (305)
225 TIGR02338 gimC_beta prefoldin, 78.4 31 0.00067 27.2 12.1 79 173-251 14-107 (110)
226 PF15035 Rootletin: Ciliary ro 78.2 45 0.00098 29.0 14.9 74 176-249 81-165 (182)
227 TIGR03185 DNA_S_dndD DNA sulfu 78.1 42 0.0009 34.8 13.0 21 236-256 266-286 (650)
228 KOG0964|consensus 78.0 35 0.00076 37.0 12.2 90 175-264 677-766 (1200)
229 PRK00295 hypothetical protein; 77.7 24 0.00052 25.6 8.3 31 220-250 21-51 (68)
230 PRK04325 hypothetical protein; 77.5 25 0.00054 25.9 8.2 43 202-244 14-56 (74)
231 PF02183 HALZ: Homeobox associ 77.5 13 0.00029 24.7 6.1 40 216-255 3-42 (45)
232 PF14817 HAUS5: HAUS augmin-li 77.4 63 0.0014 33.6 13.8 93 169-265 79-171 (632)
233 PF10481 CENP-F_N: Cenp-F N-te 77.4 33 0.00071 31.8 10.5 46 215-260 92-137 (307)
234 PRK00736 hypothetical protein; 77.4 25 0.00054 25.5 8.1 30 221-250 22-51 (68)
235 PF15619 Lebercilin: Ciliary p 77.1 50 0.0011 29.0 16.7 86 168-253 67-153 (194)
236 TIGR03752 conj_TIGR03752 integ 77.0 55 0.0012 32.7 12.7 84 175-258 58-142 (472)
237 PRK00295 hypothetical protein; 76.6 26 0.00057 25.4 8.2 18 226-243 34-51 (68)
238 TIGR02231 conserved hypothetic 76.3 52 0.0011 33.1 12.8 90 169-258 71-171 (525)
239 PF06160 EzrA: Septation ring 76.3 23 0.00049 36.1 10.3 68 213-280 374-441 (560)
240 PF15372 DUF4600: Domain of un 76.1 43 0.00092 27.6 12.1 34 86-119 3-36 (129)
241 PLN02678 seryl-tRNA synthetase 76.0 28 0.0006 34.6 10.5 84 173-267 37-120 (448)
242 PF05911 DUF869: Plant protein 75.7 54 0.0012 34.9 13.0 51 186-236 116-166 (769)
243 KOG1029|consensus 75.6 22 0.00048 37.5 9.8 39 214-252 468-506 (1118)
244 COG5185 HEC1 Protein involved 75.5 62 0.0013 32.4 12.4 30 226-255 331-360 (622)
245 PRK00846 hypothetical protein; 75.4 32 0.00068 25.8 8.6 47 199-245 15-61 (77)
246 PRK03947 prefoldin subunit alp 75.4 43 0.00093 27.3 13.7 34 222-255 98-131 (140)
247 PF05064 Nsp1_C: Nsp1-like C-t 75.3 4.8 0.0001 32.3 4.2 89 173-261 19-107 (116)
248 KOG0978|consensus 74.7 70 0.0015 33.5 13.3 20 172-191 464-483 (698)
249 PF07926 TPR_MLP1_2: TPR/MLP1/ 74.4 45 0.00098 27.1 14.2 17 243-259 102-118 (132)
250 PF07889 DUF1664: Protein of u 74.2 46 0.001 27.2 9.7 57 172-228 64-120 (126)
251 KOG4809|consensus 74.0 1.1E+02 0.0023 31.3 14.9 88 176-263 313-404 (654)
252 PRK02793 phi X174 lysis protei 73.9 32 0.0007 25.2 8.3 39 206-244 17-55 (72)
253 PF10211 Ax_dynein_light: Axon 73.9 50 0.0011 28.8 10.5 18 44-61 18-35 (189)
254 KOG0980|consensus 73.6 92 0.002 33.5 13.8 55 210-264 430-484 (980)
255 PF10498 IFT57: Intra-flagella 73.5 75 0.0016 30.6 12.5 22 10-32 74-95 (359)
256 PRK13729 conjugal transfer pil 73.3 16 0.00036 36.3 8.1 41 218-258 90-130 (475)
257 PRK11578 macrolide transporter 72.9 78 0.0017 30.1 12.6 103 173-276 96-202 (370)
258 PRK13729 conjugal transfer pil 72.8 20 0.00042 35.8 8.5 38 217-254 82-119 (475)
259 KOG2196|consensus 72.7 76 0.0016 28.9 11.9 89 169-257 71-159 (254)
260 KOG0999|consensus 72.6 1.2E+02 0.0026 31.1 18.1 36 86-121 45-80 (772)
261 PF14992 TMCO5: TMCO5 family 72.5 20 0.00042 33.4 7.9 87 169-255 11-100 (280)
262 KOG1029|consensus 72.1 45 0.00099 35.3 11.0 59 198-256 445-503 (1118)
263 PRK00736 hypothetical protein; 72.1 35 0.00075 24.7 8.0 16 227-242 35-50 (68)
264 KOG4603|consensus 72.0 48 0.001 28.7 9.5 67 166-232 76-144 (201)
265 KOG4643|consensus 71.7 1.6E+02 0.0035 32.3 16.2 17 100-116 417-433 (1195)
266 KOG2391|consensus 71.7 29 0.00062 33.2 8.9 54 190-243 225-278 (365)
267 COG5185 HEC1 Protein involved 71.5 89 0.0019 31.3 12.4 34 176-209 330-363 (622)
268 KOG4460|consensus 71.3 1.3E+02 0.0028 30.9 13.6 25 233-257 663-687 (741)
269 KOG0946|consensus 71.0 21 0.00046 37.8 8.5 46 171-216 652-697 (970)
270 PF05911 DUF869: Plant protein 70.5 1.1E+02 0.0024 32.6 13.8 20 231-250 672-691 (769)
271 TIGR03495 phage_LysB phage lys 70.5 61 0.0013 26.9 11.7 74 179-252 22-95 (135)
272 PF00170 bZIP_1: bZIP transcri 70.5 34 0.00075 24.0 8.6 31 206-236 28-58 (64)
273 PF02403 Seryl_tRNA_N: Seryl-t 70.5 48 0.001 25.7 9.3 33 226-258 68-100 (108)
274 PF03961 DUF342: Protein of un 70.4 31 0.00068 34.0 9.5 79 172-251 330-408 (451)
275 KOG0612|consensus 70.3 1E+02 0.0023 34.3 13.6 36 6-41 216-254 (1317)
276 cd00632 Prefoldin_beta Prefold 70.1 49 0.0011 25.7 12.6 38 222-259 67-104 (105)
277 PF12128 DUF3584: Protein of u 70.0 1.2E+02 0.0026 34.0 14.7 14 101-114 514-527 (1201)
278 KOG0249|consensus 69.9 96 0.0021 32.7 12.7 61 213-273 211-271 (916)
279 cd00632 Prefoldin_beta Prefold 69.8 50 0.0011 25.6 12.0 44 208-251 60-103 (105)
280 TIGR02231 conserved hypothetic 69.7 96 0.0021 31.1 13.0 85 168-252 77-172 (525)
281 KOG2264|consensus 69.5 33 0.00072 35.1 9.2 16 236-251 132-147 (907)
282 PF11180 DUF2968: Protein of u 69.5 79 0.0017 27.8 11.5 72 179-250 108-186 (192)
283 KOG2751|consensus 69.0 1.2E+02 0.0027 29.9 19.2 103 170-272 184-290 (447)
284 PRK03947 prefoldin subunit alp 68.9 62 0.0013 26.4 13.0 45 209-253 92-136 (140)
285 PF05701 WEMBL: Weak chloropla 68.8 1E+02 0.0022 31.2 12.9 34 177-210 289-322 (522)
286 PF07926 TPR_MLP1_2: TPR/MLP1/ 68.8 62 0.0013 26.3 14.4 17 236-252 102-118 (132)
287 PRK05431 seryl-tRNA synthetase 68.5 53 0.0011 32.3 10.5 83 173-266 32-114 (425)
288 PF01920 Prefoldin_2: Prefoldi 68.5 50 0.0011 25.1 9.1 44 208-251 59-102 (106)
289 PF05483 SCP-1: Synaptonemal c 68.4 1.6E+02 0.0035 30.9 16.0 59 171-229 589-647 (786)
290 PRK00409 recombination and DNA 68.0 1.3E+02 0.0028 32.1 13.9 34 178-211 525-558 (782)
291 KOG4603|consensus 67.9 81 0.0018 27.3 10.6 59 167-225 84-144 (201)
292 KOG0239|consensus 67.9 65 0.0014 33.7 11.4 84 187-270 238-331 (670)
293 PLN02320 seryl-tRNA synthetase 67.8 59 0.0013 32.8 10.8 48 220-267 132-179 (502)
294 TIGR00414 serS seryl-tRNA synt 67.6 71 0.0015 31.3 11.2 83 173-266 34-117 (418)
295 PF10205 KLRAQ: Predicted coil 67.6 59 0.0013 25.6 11.7 72 174-252 3-74 (102)
296 PF15035 Rootletin: Ciliary ro 67.5 83 0.0018 27.3 12.1 54 202-255 65-118 (182)
297 PF06160 EzrA: Septation ring 66.6 1.6E+02 0.0034 30.1 17.0 80 172-251 347-426 (560)
298 PF12761 End3: Actin cytoskele 66.5 92 0.002 27.4 11.8 31 221-251 163-193 (195)
299 KOG0946|consensus 66.3 1.9E+02 0.0041 31.0 17.2 27 173-199 748-774 (970)
300 PF06810 Phage_GP20: Phage min 65.5 83 0.0018 26.5 10.2 23 175-197 26-48 (155)
301 PF09738 DUF2051: Double stran 65.3 64 0.0014 30.4 9.9 22 234-255 142-163 (302)
302 TIGR02894 DNA_bind_RsfA transc 65.2 88 0.0019 26.7 11.9 35 214-248 114-148 (161)
303 PF14282 FlxA: FlxA-like prote 65.1 62 0.0013 25.4 8.4 25 227-251 53-77 (106)
304 TIGR02894 DNA_bind_RsfA transc 65.0 41 0.00088 28.7 7.7 30 218-247 104-133 (161)
305 KOG0018|consensus 65.0 1E+02 0.0023 33.8 12.3 74 185-258 404-477 (1141)
306 PF03962 Mnd1: Mnd1 family; I 65.0 73 0.0016 27.7 9.7 85 168-252 68-162 (188)
307 PRK09343 prefoldin subunit bet 64.9 72 0.0016 25.7 12.9 47 208-254 68-114 (121)
308 TIGR02680 conserved hypothetic 64.6 1.9E+02 0.0041 32.9 15.0 42 219-260 355-396 (1353)
309 PF04880 NUDE_C: NUDE protein, 64.5 13 0.00028 31.9 4.8 19 230-248 29-47 (166)
310 PF10224 DUF2205: Predicted co 64.5 59 0.0013 24.5 9.5 44 202-245 21-64 (80)
311 TIGR01069 mutS2 MutS2 family p 64.1 1.4E+02 0.0031 31.8 13.3 18 189-206 531-548 (771)
312 PF00170 bZIP_1: bZIP transcri 64.0 48 0.001 23.3 7.2 26 224-249 32-57 (64)
313 TIGR02449 conserved hypothetic 64.0 53 0.0011 23.8 9.3 22 224-245 34-55 (65)
314 COG3096 MukB Uncharacterized p 63.8 1.4E+02 0.003 31.9 12.5 74 175-248 347-420 (1480)
315 PF12777 MT: Microtubule-bindi 63.7 38 0.00081 32.2 8.3 77 177-253 229-305 (344)
316 PF06810 Phage_GP20: Phage min 63.5 84 0.0018 26.5 9.5 17 219-235 52-68 (155)
317 KOG0994|consensus 63.5 1.8E+02 0.0039 32.6 13.6 40 212-251 1711-1750(1758)
318 TIGR00634 recN DNA repair prot 63.4 99 0.0021 31.4 11.7 15 104-118 188-202 (563)
319 PF13863 DUF4200: Domain of un 63.1 74 0.0016 25.2 12.9 39 214-252 70-108 (126)
320 PRK10803 tol-pal system protei 62.8 80 0.0017 28.9 10.0 29 188-216 59-87 (263)
321 KOG2264|consensus 62.7 83 0.0018 32.3 10.5 27 181-207 98-124 (907)
322 PF10779 XhlA: Haemolysin XhlA 62.6 56 0.0012 23.6 7.2 31 223-253 18-48 (71)
323 PF06120 Phage_HK97_TLTM: Tail 62.5 1.4E+02 0.003 28.1 13.8 32 172-203 77-108 (301)
324 PF07200 Mod_r: Modifier of ru 62.5 84 0.0018 25.8 9.3 14 238-251 98-111 (150)
325 PF13863 DUF4200: Domain of un 62.5 76 0.0017 25.1 15.1 16 219-234 82-97 (126)
326 PF12240 Angiomotin_C: Angiomo 62.3 1.1E+02 0.0025 27.0 12.6 87 179-265 60-169 (205)
327 KOG1003|consensus 62.0 1.1E+02 0.0025 27.0 12.3 43 214-256 161-203 (205)
328 PF15066 CAGE1: Cancer-associa 62.0 1.8E+02 0.0038 29.2 12.8 43 217-259 389-431 (527)
329 KOG0982|consensus 61.8 1.7E+02 0.0037 29.0 14.0 19 186-204 307-325 (502)
330 PF05701 WEMBL: Weak chloropla 61.8 1.9E+02 0.004 29.3 18.1 24 93-116 297-320 (522)
331 PF03961 DUF342: Protein of un 61.5 54 0.0012 32.3 9.2 36 223-258 373-408 (451)
332 KOG4593|consensus 61.5 2.2E+02 0.0047 30.0 14.1 76 177-252 138-220 (716)
333 PRK00888 ftsB cell division pr 60.9 32 0.0007 27.1 6.1 28 218-245 34-61 (105)
334 PF04880 NUDE_C: NUDE protein, 60.2 17 0.00038 31.1 4.8 27 221-248 27-53 (166)
335 PF10805 DUF2730: Protein of u 60.1 83 0.0018 24.7 8.8 20 181-200 40-59 (106)
336 PRK12705 hypothetical protein; 59.9 2E+02 0.0044 29.1 13.1 29 185-213 86-114 (508)
337 TIGR02680 conserved hypothetic 59.5 3.1E+02 0.0068 31.2 18.5 12 56-67 163-174 (1353)
338 PF10498 IFT57: Intra-flagella 59.4 1.7E+02 0.0037 28.2 17.3 21 76-96 183-203 (359)
339 KOG0804|consensus 59.0 2E+02 0.0043 28.7 13.6 42 165-206 328-370 (493)
340 TIGR01010 BexC_CtrB_KpsE polys 58.8 1.7E+02 0.0036 27.8 14.5 58 195-252 247-305 (362)
341 KOG4302|consensus 58.5 2.4E+02 0.0052 29.6 16.1 93 166-258 157-259 (660)
342 PF04012 PspA_IM30: PspA/IM30 58.4 1.3E+02 0.0028 26.4 14.2 15 168-182 29-43 (221)
343 COG4372 Uncharacterized protei 57.7 2E+02 0.0042 28.3 13.3 14 5-18 8-21 (499)
344 COG4372 Uncharacterized protei 57.5 2E+02 0.0043 28.3 13.2 63 176-238 217-279 (499)
345 KOG0963|consensus 57.5 2.4E+02 0.0052 29.2 14.2 32 87-118 110-141 (629)
346 KOG0979|consensus 56.8 2.7E+02 0.0058 30.6 13.5 24 27-50 461-484 (1072)
347 TIGR03545 conserved hypothetic 56.7 2.4E+02 0.0051 28.9 13.4 8 264-271 274-281 (555)
348 PF13870 DUF4201: Domain of un 56.6 1.2E+02 0.0027 25.6 14.0 33 92-124 7-40 (177)
349 PRK00888 ftsB cell division pr 56.4 56 0.0012 25.7 6.8 10 219-228 49-58 (105)
350 PF07851 TMPIT: TMPIT-like pro 56.1 1.9E+02 0.0041 27.6 12.5 18 235-252 71-88 (330)
351 PF15397 DUF4618: Domain of un 56.0 1.7E+02 0.0036 27.0 16.8 39 218-256 186-224 (258)
352 PRK11281 hypothetical protein; 55.8 1.9E+02 0.0042 32.2 12.8 33 172-204 76-108 (1113)
353 PF14817 HAUS5: HAUS augmin-li 55.6 2.6E+02 0.0057 29.1 14.4 90 177-266 80-169 (632)
354 TIGR03545 conserved hypothetic 55.4 96 0.0021 31.7 9.9 21 222-242 216-236 (555)
355 PRK10636 putative ABC transpor 55.3 1.4E+02 0.0029 31.0 11.2 26 228-253 601-626 (638)
356 PF02994 Transposase_22: L1 tr 55.1 36 0.00079 32.8 6.6 30 224-253 157-186 (370)
357 PF08657 DASH_Spc34: DASH comp 54.7 88 0.0019 28.8 8.7 12 31-42 36-47 (259)
358 smart00338 BRLZ basic region l 54.7 72 0.0016 22.4 8.0 33 215-247 30-62 (65)
359 PF04977 DivIC: Septum formati 54.6 67 0.0015 23.0 6.6 20 225-244 31-50 (80)
360 COG1382 GimC Prefoldin, chaper 54.5 1.2E+02 0.0025 24.7 12.8 46 208-253 67-112 (119)
361 PF14915 CCDC144C: CCDC144C pr 54.3 1.9E+02 0.0042 27.2 16.4 41 222-262 218-258 (305)
362 PF14362 DUF4407: Domain of un 54.2 1.8E+02 0.0039 26.8 12.5 8 263-270 239-246 (301)
363 PF07989 Microtub_assoc: Micro 53.9 88 0.0019 23.1 9.5 32 217-248 42-73 (75)
364 PF14389 Lzipper-MIP1: Leucine 53.9 96 0.0021 23.6 9.0 30 226-255 55-84 (88)
365 PF14282 FlxA: FlxA-like prote 53.9 1.1E+02 0.0023 24.1 8.8 16 170-185 20-35 (106)
366 PF15294 Leu_zip: Leucine zipp 53.8 1.9E+02 0.0041 26.9 12.4 46 166-211 129-174 (278)
367 PF05791 Bacillus_HBL: Bacillu 53.8 1.5E+02 0.0032 25.6 10.7 76 170-255 104-179 (184)
368 PF13094 CENP-Q: CENP-Q, a CEN 53.7 1.3E+02 0.0028 25.1 10.6 12 175-186 26-37 (160)
369 COG4477 EzrA Negative regulato 53.4 1.9E+02 0.0041 29.5 11.2 42 204-245 368-409 (570)
370 PF15294 Leu_zip: Leucine zipp 53.2 1.5E+02 0.0032 27.7 9.8 15 169-183 139-153 (278)
371 PF04977 DivIC: Septum formati 53.1 62 0.0013 23.2 6.2 30 222-251 21-50 (80)
372 KOG4302|consensus 53.1 2.9E+02 0.0064 28.9 17.3 93 168-260 102-202 (660)
373 PF11365 DUF3166: Protein of u 52.7 80 0.0017 24.6 6.9 7 181-187 6-12 (96)
374 PF12329 TMF_DNA_bd: TATA elem 52.6 91 0.002 22.9 10.9 40 194-233 30-69 (74)
375 PF12795 MscS_porin: Mechanose 52.3 1.7E+02 0.0038 26.1 13.0 88 171-258 33-132 (240)
376 PF04508 Pox_A_type_inc: Viral 52.3 28 0.00061 19.9 3.2 21 99-119 2-22 (23)
377 PF15134 DUF4570: Domain of un 52.2 1.2E+02 0.0026 24.2 9.5 42 226-270 39-80 (109)
378 PF06428 Sec2p: GDP/GTP exchan 52.1 32 0.00069 27.0 4.7 41 218-258 44-84 (100)
379 PF13118 DUF3972: Protein of u 51.9 78 0.0017 25.9 7.0 50 180-229 74-124 (126)
380 PRK09841 cryptic autophosphory 51.6 3.1E+02 0.0068 28.8 15.1 33 221-253 366-398 (726)
381 PF08172 CASP_C: CASP C termin 51.4 1.9E+02 0.0042 26.3 12.2 25 89-113 11-35 (248)
382 TIGR00414 serS seryl-tRNA synt 51.1 1.5E+02 0.0033 29.0 10.3 32 227-258 71-102 (418)
383 KOG0978|consensus 50.5 3.3E+02 0.0072 28.7 13.7 21 240-260 602-622 (698)
384 COG2900 SlyX Uncharacterized p 50.4 1E+02 0.0022 22.8 8.1 10 206-215 17-26 (72)
385 PF05700 BCAS2: Breast carcino 50.3 1.8E+02 0.004 25.8 11.9 29 223-251 187-215 (221)
386 KOG1003|consensus 50.2 1.8E+02 0.004 25.7 11.2 11 217-227 171-181 (205)
387 KOG1760|consensus 50.1 1.4E+02 0.0031 24.4 11.6 83 176-258 23-121 (131)
388 PHA01750 hypothetical protein 50.0 54 0.0012 23.8 5.1 33 223-255 40-72 (75)
389 KOG2685|consensus 49.9 2.6E+02 0.0057 27.5 12.5 35 176-210 285-319 (421)
390 TIGR02132 phaR_Bmeg polyhydrox 49.5 1.8E+02 0.0038 25.4 10.2 21 173-193 83-103 (189)
391 TIGR01005 eps_transp_fam exopo 49.3 3.1E+02 0.0067 28.8 12.9 31 224-254 375-405 (754)
392 KOG0612|consensus 49.2 4.3E+02 0.0094 29.7 15.3 46 192-237 604-649 (1317)
393 PF00846 Hanta_nucleocap: Hant 49.1 2.7E+02 0.0058 27.3 11.3 69 184-254 3-71 (428)
394 PF05064 Nsp1_C: Nsp1-like C-t 48.7 43 0.00094 26.7 5.1 55 205-259 44-98 (116)
395 PLN02678 seryl-tRNA synthetase 48.4 1.7E+02 0.0036 29.2 10.1 34 225-258 71-104 (448)
396 KOG0709|consensus 48.3 46 0.00099 33.1 6.0 56 213-268 274-329 (472)
397 PF06120 Phage_HK97_TLTM: Tail 48.1 2.4E+02 0.0053 26.5 11.2 38 196-233 73-110 (301)
398 PRK11546 zraP zinc resistance 47.7 1.7E+02 0.0036 24.5 8.5 27 169-195 54-80 (143)
399 KOG3433|consensus 47.7 1.9E+02 0.0042 25.3 11.8 81 172-252 84-164 (203)
400 KOG4807|consensus 47.7 2.9E+02 0.0062 27.2 13.8 141 103-260 296-463 (593)
401 PRK05431 seryl-tRNA synthetase 47.5 1.8E+02 0.0039 28.6 10.2 29 229-257 70-98 (425)
402 PF10234 Cluap1: Clusterin-ass 47.5 2.3E+02 0.0051 26.2 13.6 12 233-244 226-237 (267)
403 PRK10361 DNA recombination pro 47.3 3.1E+02 0.0068 27.6 13.7 84 168-255 28-111 (475)
404 PF05557 MAD: Mitotic checkpoi 47.3 21 0.00046 37.4 3.9 26 223-248 508-533 (722)
405 PF10212 TTKRSYEDQ: Predicted 47.1 3.2E+02 0.007 27.7 11.8 42 209-250 439-480 (518)
406 PRK13182 racA polar chromosome 47.1 1.9E+02 0.0041 25.0 9.5 25 228-252 121-145 (175)
407 PF05546 She9_MDM33: She9 / Md 47.0 2.1E+02 0.0046 25.5 11.7 22 235-256 109-130 (207)
408 KOG4571|consensus 46.9 89 0.0019 29.2 7.4 32 219-250 256-287 (294)
409 TIGR03007 pepcterm_ChnLen poly 46.8 3E+02 0.0064 27.2 18.5 22 98-119 168-189 (498)
410 PF02050 FliJ: Flagellar FliJ 46.6 1.3E+02 0.0027 22.8 12.7 9 206-214 61-69 (123)
411 COG4477 EzrA Negative regulato 46.6 2.3E+02 0.0049 28.9 10.6 80 173-252 351-430 (570)
412 PF12777 MT: Microtubule-bindi 46.4 2.6E+02 0.0057 26.4 14.4 31 176-206 15-45 (344)
413 PF02994 Transposase_22: L1 tr 46.3 85 0.0018 30.3 7.6 44 217-260 143-186 (370)
414 PF15188 CCDC-167: Coiled-coil 46.0 1.3E+02 0.0029 22.9 7.6 19 171-189 7-25 (85)
415 PF14257 DUF4349: Domain of un 45.8 1.3E+02 0.0027 27.2 8.4 64 181-249 130-193 (262)
416 PF13874 Nup54: Nucleoporin co 45.0 1.7E+02 0.0038 24.0 9.5 52 213-264 74-125 (141)
417 PRK10698 phage shock protein P 44.7 2.3E+02 0.005 25.3 13.7 40 171-210 94-133 (222)
418 KOG4196|consensus 44.6 1.8E+02 0.0039 24.0 9.4 30 223-252 79-108 (135)
419 KOG4571|consensus 44.5 84 0.0018 29.4 6.8 41 219-259 249-289 (294)
420 PF11544 Spc42p: Spindle pole 44.1 1.3E+02 0.0029 22.4 9.4 17 200-216 8-24 (76)
421 PF15112 DUF4559: Domain of un 44.0 2.8E+02 0.0062 26.2 12.1 25 49-73 112-136 (307)
422 KOG0993|consensus 43.9 3.3E+02 0.0072 26.9 11.5 26 95-120 35-60 (542)
423 PF05483 SCP-1: Synaptonemal c 43.9 4.1E+02 0.009 28.0 14.9 62 178-239 589-650 (786)
424 PF09728 Taxilin: Myosin-like 43.9 2.8E+02 0.0061 26.1 14.4 19 233-251 280-298 (309)
425 PF06428 Sec2p: GDP/GTP exchan 43.8 99 0.0021 24.2 6.3 31 233-263 45-75 (100)
426 PF04642 DUF601: Protein of un 43.5 2.7E+02 0.0058 25.7 13.1 37 41-77 102-145 (311)
427 PF09787 Golgin_A5: Golgin sub 43.3 3.6E+02 0.0078 27.1 12.4 24 87-110 112-135 (511)
428 PF06632 XRCC4: DNA double-str 42.9 3.1E+02 0.0067 26.3 12.7 24 230-253 185-208 (342)
429 PRK14127 cell division protein 42.1 1.1E+02 0.0024 24.4 6.4 10 230-239 49-58 (109)
430 KOG2077|consensus 41.6 2E+02 0.0044 29.6 9.4 23 226-248 400-422 (832)
431 COG4985 ABC-type phosphate tra 41.6 2.8E+02 0.006 25.3 9.5 45 219-263 215-259 (289)
432 PF05384 DegS: Sensor protein 41.4 2.2E+02 0.0048 24.2 12.8 84 176-259 27-118 (159)
433 TIGR02338 gimC_beta prefoldin, 41.0 1.7E+02 0.0038 22.8 12.4 37 221-257 70-106 (110)
434 TIGR01730 RND_mfp RND family e 40.9 2.7E+02 0.0058 25.2 9.8 39 230-269 107-145 (322)
435 PF06008 Laminin_I: Laminin Do 40.8 2.8E+02 0.006 25.1 12.0 19 241-259 122-140 (264)
436 PF05008 V-SNARE: Vesicle tran 40.6 1.4E+02 0.003 21.6 7.8 15 225-239 61-75 (79)
437 PF05700 BCAS2: Breast carcino 40.4 2.6E+02 0.0057 24.7 12.8 31 223-253 180-210 (221)
438 PF04859 DUF641: Plant protein 40.3 1.1E+02 0.0023 25.3 6.2 46 168-213 86-131 (131)
439 TIGR01000 bacteriocin_acc bact 40.3 3.7E+02 0.008 26.4 13.4 108 169-276 165-335 (457)
440 PF11221 Med21: Subunit 21 of 40.2 2.1E+02 0.0046 23.6 8.4 26 170-195 63-88 (144)
441 PF10267 Tmemb_cc2: Predicted 40.2 3.7E+02 0.008 26.4 13.3 11 242-252 301-311 (395)
442 PF14988 DUF4515: Domain of un 40.1 2.6E+02 0.0057 24.7 13.9 53 171-223 42-97 (206)
443 PF07208 DUF1414: Protein of u 40.0 24 0.00052 23.5 1.9 16 4-19 7-22 (44)
444 KOG1899|consensus 39.8 2.7E+02 0.0058 29.1 10.0 30 236-265 235-264 (861)
445 PF02388 FemAB: FemAB family; 39.5 2.1E+02 0.0045 27.8 9.2 28 223-250 271-298 (406)
446 PF04012 PspA_IM30: PspA/IM30 39.4 2.6E+02 0.0056 24.4 14.3 39 213-251 100-138 (221)
447 KOG3856|consensus 39.4 39 0.00084 27.6 3.4 45 235-279 13-63 (135)
448 KOG4593|consensus 39.1 4.9E+02 0.011 27.5 13.7 27 233-259 238-264 (716)
449 PLN02320 seryl-tRNA synthetase 39.1 2.5E+02 0.0054 28.4 9.8 30 217-246 136-165 (502)
450 PF06409 NPIP: Nuclear pore co 38.9 2.5E+02 0.0054 25.6 8.7 62 191-252 114-175 (265)
451 TIGR02209 ftsL_broad cell divi 38.7 1.5E+02 0.0033 21.6 7.3 28 217-244 30-57 (85)
452 KOG0018|consensus 38.7 3.5E+02 0.0076 30.0 11.1 29 225-253 725-753 (1141)
453 KOG4787|consensus 38.7 3E+02 0.0065 28.5 10.1 43 216-258 499-548 (852)
454 PLN03188 kinesin-12 family pro 38.4 6.4E+02 0.014 28.6 13.8 39 166-204 1170-1208(1320)
455 KOG4196|consensus 38.4 1.4E+02 0.003 24.7 6.4 33 213-245 83-115 (135)
456 KOG4343|consensus 38.1 2E+02 0.0043 29.4 8.7 41 222-265 306-348 (655)
457 PF09766 FimP: Fms-interacting 37.9 2.8E+02 0.0061 26.6 9.7 31 228-258 118-148 (355)
458 PF09325 Vps5: Vps5 C terminal 37.9 2.7E+02 0.0059 24.2 10.6 181 67-257 5-195 (236)
459 KOG3091|consensus 37.6 2.5E+02 0.0054 28.3 9.3 92 172-263 337-428 (508)
460 PF10458 Val_tRNA-synt_C: Valy 37.4 1.5E+02 0.0032 21.0 8.0 52 208-259 1-66 (66)
461 TIGR00998 8a0101 efflux pump m 37.3 3.3E+02 0.0072 25.0 14.0 109 168-276 79-223 (334)
462 PRK11519 tyrosine kinase; Prov 37.0 5.2E+02 0.011 27.2 15.2 125 96-254 272-399 (719)
463 TIGR03495 phage_LysB phage lys 37.0 2.4E+02 0.0052 23.3 11.8 77 170-246 20-96 (135)
464 TIGR01000 bacteriocin_acc bact 36.9 4.2E+02 0.009 26.0 16.8 155 84-263 90-315 (457)
465 PF03148 Tektin: Tektin family 36.9 4E+02 0.0086 25.8 14.4 94 167-260 235-352 (384)
466 PF07334 IFP_35_N: Interferon- 36.9 74 0.0016 23.8 4.3 28 227-254 2-29 (76)
467 PF10018 Med4: Vitamin-D-recep 36.4 2.8E+02 0.0061 23.9 9.7 68 197-265 2-69 (188)
468 PF13874 Nup54: Nucleoporin co 36.3 1.5E+02 0.0034 24.3 6.7 84 200-290 33-116 (141)
469 PF13942 Lipoprotein_20: YfhG 36.3 2.9E+02 0.0062 24.0 11.5 95 164-268 72-169 (179)
470 PF10458 Val_tRNA-synt_C: Valy 36.2 1.6E+02 0.0034 20.9 8.5 52 187-238 1-66 (66)
471 KOG0962|consensus 36.1 6.6E+02 0.014 28.6 13.0 91 169-259 826-919 (1294)
472 KOG2391|consensus 36.0 3.7E+02 0.0081 25.9 9.8 65 195-259 216-280 (365)
473 PF13815 Dzip-like_N: Iguana/D 35.8 1.5E+02 0.0032 23.6 6.3 43 200-242 76-118 (118)
474 COG4717 Uncharacterized conser 35.7 6.1E+02 0.013 27.6 13.2 198 33-259 494-717 (984)
475 PF07200 Mod_r: Modifier of ru 35.6 2.5E+02 0.0053 23.0 11.2 92 163-255 1-92 (150)
476 KOG3119|consensus 35.5 2.7E+02 0.0059 25.6 8.9 62 197-258 194-255 (269)
477 PRK10636 putative ABC transpor 34.9 3.9E+02 0.0086 27.6 10.9 77 171-247 551-634 (638)
478 PRK14127 cell division protein 34.8 2.1E+02 0.0045 22.8 6.9 42 207-248 26-67 (109)
479 PRK13182 racA polar chromosome 34.8 3E+02 0.0065 23.7 9.8 65 168-234 84-148 (175)
480 KOG3990|consensus 34.8 2.7E+02 0.0059 25.6 8.4 75 191-266 226-301 (305)
481 COG1730 GIM5 Predicted prefold 34.7 2.8E+02 0.006 23.3 13.3 88 167-254 4-137 (145)
482 smart00502 BBC B-Box C-termina 34.7 2.1E+02 0.0045 21.9 13.9 98 171-268 2-108 (127)
483 COG3096 MukB Uncharacterized p 34.6 4.5E+02 0.0098 28.3 10.8 71 189-259 347-417 (1480)
484 PF09728 Taxilin: Myosin-like 34.5 4E+02 0.0086 25.1 14.2 96 167-262 20-115 (309)
485 PRK11546 zraP zinc resistance 34.4 2.8E+02 0.006 23.2 8.9 72 176-247 47-118 (143)
486 PF13815 Dzip-like_N: Iguana/D 34.4 2E+02 0.0042 22.9 6.9 43 178-220 75-117 (118)
487 COG1730 GIM5 Predicted prefold 34.4 2.8E+02 0.006 23.2 12.8 87 175-261 5-130 (145)
488 TIGR01005 eps_transp_fam exopo 34.1 5.7E+02 0.012 26.8 17.4 140 87-261 190-374 (754)
489 KOG2077|consensus 34.0 4.3E+02 0.0092 27.4 10.3 93 170-262 309-405 (832)
490 PRK11448 hsdR type I restricti 33.9 3.7E+02 0.0081 30.0 10.9 85 174-258 147-231 (1123)
491 PF06632 XRCC4: DNA double-str 33.5 4.4E+02 0.0095 25.3 10.8 65 193-257 126-190 (342)
492 KOG0614|consensus 33.2 2.7E+02 0.0059 28.7 8.8 76 172-283 20-95 (732)
493 PF12004 DUF3498: Domain of un 33.0 14 0.00031 37.0 0.0 134 91-255 362-495 (495)
494 cd07429 Cby_like Chibby, a nuc 33.0 1.3E+02 0.0029 23.9 5.4 36 218-253 72-107 (108)
495 PF05622 HOOK: HOOK protein; 32.8 15 0.00032 38.6 0.0 87 172-258 335-424 (713)
496 PF06637 PV-1: PV-1 protein (P 32.4 4.9E+02 0.011 25.5 11.7 84 179-262 281-379 (442)
497 PF07246 Phlebovirus_NSM: Phle 32.4 4.1E+02 0.0089 24.6 10.2 92 177-269 142-246 (264)
498 KOG2307|consensus 32.4 4.1E+02 0.009 27.4 9.9 97 180-288 79-175 (705)
499 PF04129 Vps52: Vps52 / Sac2 f 32.3 5.3E+02 0.012 25.9 11.4 69 176-244 14-82 (508)
500 PF05557 MAD: Mitotic checkpoi 31.8 48 0.001 34.8 3.6 96 172-267 450-547 (722)
No 1
>KOG0240|consensus
Probab=100.00 E-value=9.4e-42 Score=328.56 Aligned_cols=247 Identities=57% Similarity=0.802 Sum_probs=219.3
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
+||+||+|||+||+||++|+++|||||||||||||+|+|||||+|.+|+||+|+..+..||.+||+|+.||+.|+|.+.+
T Consensus 258 ~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~ 337 (607)
T KOG0240|consen 258 NINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWV 337 (607)
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccccccchhhccccccccchhhh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcc
Q psy5721 81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSG 160 (290)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (290)
|...+.+.|++.|+..++.+..+...+..+...|.+|++|+.++.++++.+.......... .. ........
T Consensus 338 n~e~~~e~~~r~~e~~kd~~~~~~~~~~~~~~sl~~~~~~E~~~~de~~~~~~~~k~~~~~-~~----~~~~i~~~---- 408 (607)
T KOG0240|consen 338 NLELTAEEWKRKLEKKKDKNVALKEELEKLRNSLKRWRNGEEVKEDEDFSLKEEAKMSAIL-SE----EEMSITKL---- 408 (607)
T ss_pred hhHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhcccCcccchhhhhHHHHHHhhhhh-hh----hhhhhhhc----
Confidence 9999999999999999999999999999999999999999999998887654433322100 00 00011100
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 161 LMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE 240 (290)
Q Consensus 161 ~~~~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e 240 (290)
....+.+.+.+.+++..|++|++++|.+++++++..++++.++.++++..+...+..+..+.++.++|.+++..+++
T Consensus 409 ---~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e 485 (607)
T KOG0240|consen 409 ---KGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQEENEAAKDE 485 (607)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01246778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHhhhhhhh
Q psy5721 241 VKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 241 ~kel~q~LeE~~~~l~~~~ 259 (290)
++++.++|++++.+.+-..
T Consensus 486 ~~e~~~al~el~~~~~~~~ 504 (607)
T KOG0240|consen 486 VKEVLTALEELAVNYDQKS 504 (607)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 9999999999997765443
No 2
>KOG0243|consensus
Probab=100.00 E-value=1.5e-31 Score=273.74 Aligned_cols=113 Identities=42% Similarity=0.536 Sum_probs=102.3
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||.|||+||+||.++. .|||||+|||||||||||||.++|||||||||+..++.||+|||.||.|||.|+|+|.+
T Consensus 318 ~INqSLLTLGRVInALVe~s-~HIPYRESKLTRLLQDSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPev 396 (1041)
T KOG0243|consen 318 EINQSLLTLGRVINALVEHS-GHIPYRESKLTRLLQDSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEV 396 (1041)
T ss_pred hhhHHHHHHHHHHHHHHccC-CCCCchHHHHHHHHHHHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCcc
Confidence 49999999999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy5721 81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVK 124 (290)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~ 124 (290)
|..+....+ ++.|-.+|..|+.+|...|.-.++.
T Consensus 397 NQkl~K~~l----------lKd~~~EIerLK~dl~AaReKnGvy 430 (1041)
T KOG0243|consen 397 NQKLMKKTL----------LKDLYEEIERLKRDLAAAREKNGVY 430 (1041)
T ss_pred chHHHHHHH----------HHHHHHHHHHHHHHHHHhHhhCceE
Confidence 999888665 4566667888888887776554444
No 3
>KOG4280|consensus
Probab=99.95 E-value=4.6e-29 Score=245.34 Aligned_cols=108 Identities=51% Similarity=0.650 Sum_probs=100.7
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||+++.+.||||||||||+||+|||||||+|+||+||+|+..+++||+|||+||+|||.|+|.|.+
T Consensus 263 ~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~i 342 (574)
T KOG4280|consen 263 NINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVI 342 (574)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccc
Confidence 59999999999999999999779999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
|.++.. ..++.|+.+|+.|+.++.....
T Consensus 343 ned~~~-----------~~~~~lq~ei~~Lk~~l~~~~~ 370 (574)
T KOG4280|consen 343 NEDPKD-----------ALLRELQEEIERLKKELDPGGS 370 (574)
T ss_pred cCCcch-----------hhHHHHHHHHHHHHHhhccccC
Confidence 999874 3567888889999998887543
No 4
>KOG0245|consensus
Probab=99.95 E-value=1.4e-27 Score=241.84 Aligned_cols=104 Identities=41% Similarity=0.531 Sum_probs=96.3
Q ss_pred cchhHhHHHHHHHHHHcCC------CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721 2 NIFACGALRNVISALADGN------KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK 75 (290)
Q Consensus 2 IN~SL~~L~~vi~aL~~~~------~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~ 75 (290)
|||||.|||.||+||++.. +.+||||||.||+||++.||||++|+|||.+||...||+||||||+||.|||+|+
T Consensus 270 INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv 349 (1221)
T KOG0245|consen 270 INKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIV 349 (1221)
T ss_pred cchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhh
Confidence 9999999999999999822 3699999999999999999999999999999999999999999999999999999
Q ss_pred cccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 76 NVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR 116 (290)
Q Consensus 76 ~~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~ 116 (290)
+.+.||+++.. +.|+.|++++..|+..+..
T Consensus 350 ~~avVNEdpna-----------KLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 350 NNAVVNEDPNA-----------KLIRELREEVARLKSLLRA 379 (1221)
T ss_pred ccceeCCCccH-----------HHHHHHHHHHHHHHHHHhc
Confidence 99999999886 4578899999999887653
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.92 E-value=7.6e-26 Score=234.51 Aligned_cols=86 Identities=49% Similarity=0.654 Sum_probs=80.8
Q ss_pred CcchhHhHHHHHHHHHHc----CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721 1 MNIFACGALRNVISALAD----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN 76 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~----~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~ 76 (290)
+||+||++||+||.+|+. ++..||||||||||+||+|+|||||+|+||+||||+..++.||++||+||.||+.|+|
T Consensus 357 ~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKN 436 (1320)
T PLN03188 357 NINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKN 436 (1320)
T ss_pred HHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCc
Confidence 599999999999999986 3447999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCCH
Q psy5721 77 VVTVNEELTA 86 (290)
Q Consensus 77 ~~~~n~~~~~ 86 (290)
.|.+|.....
T Consensus 437 kpvvNe~~~~ 446 (1320)
T PLN03188 437 KAVVNEVMQD 446 (1320)
T ss_pred cceeccchhh
Confidence 9999987643
No 6
>KOG0242|consensus
Probab=99.91 E-value=5e-25 Score=223.24 Aligned_cols=93 Identities=48% Similarity=0.609 Sum_probs=86.3
Q ss_pred CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
+||+||++||+||++|.+|. ..||||||||||||||++|||||+|+|||||+|+..+|+||.+||+||+||+.|++++.
T Consensus 257 ~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~ 336 (675)
T KOG0242|consen 257 HINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQ 336 (675)
T ss_pred hhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccc
Confidence 69999999999999999984 47899999999999999999999999999999999999999999999999999999999
Q ss_pred cCccCCHHHHHHHH
Q psy5721 80 VNEELTAEEWKRRY 93 (290)
Q Consensus 80 ~n~~~~~~~~~~~~ 93 (290)
+|.......+...+
T Consensus 337 ~n~~~~~~~~~~~~ 350 (675)
T KOG0242|consen 337 VNVILSDKALLKYL 350 (675)
T ss_pred cceecchhhhhHHH
Confidence 99988776554433
No 7
>KOG0241|consensus
Probab=99.91 E-value=2.6e-24 Score=215.94 Aligned_cols=104 Identities=44% Similarity=0.561 Sum_probs=92.9
Q ss_pred cchhHhHHHHHHHHHHc-----CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721 2 NIFACGALRNVISALAD-----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN 76 (290)
Q Consensus 2 IN~SL~~L~~vi~aL~~-----~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~ 76 (290)
||+||++||.||+||++ |+.++||||||.||+||+|.|||||+|.||+||||+++||+||+|||+||.|||.|+|
T Consensus 274 inkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN 353 (1714)
T KOG0241|consen 274 INKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVN 353 (1714)
T ss_pred cchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhc
Confidence 89999999999999998 3347999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 77 VVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR 116 (290)
Q Consensus 77 ~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~ 116 (290)
.+.+|.++... -++.++.++..|...|..
T Consensus 354 ~avvNedpnar-----------virElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 354 HAVVNEDPNAR-----------VIRELREEVEKLREQLEQ 382 (1714)
T ss_pred cccccCCchHH-----------HHHHHHHHHHHHHHHHhh
Confidence 99999998762 356666677777666643
No 8
>KOG0244|consensus
Probab=99.90 E-value=5.5e-23 Score=208.33 Aligned_cols=85 Identities=51% Similarity=0.660 Sum_probs=80.6
Q ss_pred cchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 2 NIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 2 IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
||.+|++||+||+||.+.+ ..||||||||||+||+|+||||+.|+||+||||+..|..||++||+||.||+.|+|+|.+
T Consensus 244 IN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vv 323 (913)
T KOG0244|consen 244 INGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVV 323 (913)
T ss_pred cchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccc
Confidence 8999999999999999965 269999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCH
Q psy5721 81 NEELTA 86 (290)
Q Consensus 81 n~~~~~ 86 (290)
|.++..
T Consensus 324 N~d~~~ 329 (913)
T KOG0244|consen 324 NQDPKS 329 (913)
T ss_pred cccHHH
Confidence 996543
No 9
>KOG0247|consensus
Probab=99.89 E-value=3e-22 Score=198.34 Aligned_cols=82 Identities=26% Similarity=0.461 Sum_probs=76.8
Q ss_pred cchhHhHHHHHHHHHHcCC----CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721 2 NIFACGALRNVISALADGN----KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV 77 (290)
Q Consensus 2 IN~SL~~L~~vi~aL~~~~----~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~ 77 (290)
||.||||||+||.+|++++ ..+||||||||||+|+.||.|.++++||+||+|...+|+|++++|+||+.|+.|.+.
T Consensus 360 INtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~ 439 (809)
T KOG0247|consen 360 INTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVA 439 (809)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhccccccc
Confidence 9999999999999999833 379999999999999999999999999999999999999999999999999999988
Q ss_pred cccCcc
Q psy5721 78 VTVNEE 83 (290)
Q Consensus 78 ~~~n~~ 83 (290)
.+++..
T Consensus 440 ~~~~~~ 445 (809)
T KOG0247|consen 440 RPVIKK 445 (809)
T ss_pred Cccccc
Confidence 877543
No 10
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.87 E-value=5.7e-23 Score=195.05 Aligned_cols=81 Identities=52% Similarity=0.682 Sum_probs=78.7
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
+||+||++|++||.+|+.+. .|||||+||||+||+++|||+|+|+||+||+|+..+++||++||+||.+++.|+|.|.+
T Consensus 271 ~iN~SL~~L~~vi~al~~~~-~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~ 349 (352)
T cd01364 271 NINQSLLTLGRVINALVEKS-PHIPYRESKLTRLLQDSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEV 349 (352)
T ss_pred hhhHHHHHHHHHHHHHHcCC-CCCCCcccHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCcccc
Confidence 59999999999999999987 89999999999999999999999999999999999999999999999999999999998
Q ss_pred Cc
Q psy5721 81 NE 82 (290)
Q Consensus 81 n~ 82 (290)
|.
T Consensus 350 n~ 351 (352)
T cd01364 350 NQ 351 (352)
T ss_pred CC
Confidence 85
No 11
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.87 E-value=6e-23 Score=193.99 Aligned_cols=74 Identities=54% Similarity=0.683 Sum_probs=70.1
Q ss_pred CcchhHhHHHHHHHHHHc---CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALAD---GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~---~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
+||+||++||+||.+|++ ++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||.||+.|
T Consensus 261 ~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 261 NINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 599999999999999986 33589999999999999999999999999999999999999999999999999876
No 12
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.86 E-value=1.7e-22 Score=190.97 Aligned_cols=74 Identities=53% Similarity=0.715 Sum_probs=71.0
Q ss_pred CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++|++||.+|+.+.+ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|
T Consensus 263 ~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 263 NINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 499999999999999999773 89999999999999999999999999999999999999999999999999876
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.85 E-value=3.9e-22 Score=189.71 Aligned_cols=81 Identities=51% Similarity=0.645 Sum_probs=76.8
Q ss_pred CcchhHhHHHHHHHHHHcCC-------CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccc
Q psy5721 1 MNIFACGALRNVISALADGN-------KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKT 73 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~-------~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~ 73 (290)
.||+||++|++||.+|+.+. ..||||||||||+||+++|||+++|+||+||+|+..+++||++||+||.+++.
T Consensus 269 ~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~ 348 (356)
T cd01365 269 NINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKTAMIATISPADINYEETLSTLRYADRAKK 348 (356)
T ss_pred HHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhh
Confidence 49999999999999998742 48999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q psy5721 74 IKNVVTVN 81 (290)
Q Consensus 74 i~~~~~~n 81 (290)
|++.|.+|
T Consensus 349 i~~~~~~~ 356 (356)
T cd01365 349 IVNVAVVN 356 (356)
T ss_pred ccCccccC
Confidence 99999875
No 14
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.85 E-value=7.7e-22 Score=187.00 Aligned_cols=72 Identities=26% Similarity=0.427 Sum_probs=68.3
Q ss_pred CcchhHhHHHHHHHHHHcC-----CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADG-----NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~-----~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
.||+||++|++||.+|+++ ...||||||||||+||+|+|||+|+|+||+||||+..+++||++||+||++|+
T Consensus 269 ~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 269 NINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred hhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 4999999999999999983 35899999999999999999999999999999999999999999999999985
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.84 E-value=1.5e-21 Score=183.38 Aligned_cols=74 Identities=73% Similarity=1.042 Sum_probs=71.7
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
+||+||++|++||.+|.++++.|||||||+||+||+++|||+|+|+||+||+|+..++.||++||+||+||+.|
T Consensus 252 ~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 252 KINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred HHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 48999999999999999988799999999999999999999999999999999999999999999999999875
No 16
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.84 E-value=1.7e-21 Score=182.68 Aligned_cols=71 Identities=41% Similarity=0.565 Sum_probs=69.0
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
.||+||++||+||.+|..+. .|||||||+||+||+|+|||+|+|+||+||+|+..++.||++||+||.|||
T Consensus 249 ~iN~Sl~~L~~vi~aL~~~~-~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 249 AINSSLFVLSKVVDALNKGL-PRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred hhhhhHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 59999999999999999987 899999999999999999999999999999999999999999999999986
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.84 E-value=2.3e-21 Score=182.82 Aligned_cols=74 Identities=57% Similarity=0.795 Sum_probs=71.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++|++||.+|.+++..|||||+||||+||+++|||+|+|+||+||+|...++.||++||+||+||+.|
T Consensus 260 ~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 260 KINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 49999999999999999988679999999999999999999999999999999999999999999999999876
No 18
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.84 E-value=2e-21 Score=182.58 Aligned_cols=71 Identities=37% Similarity=0.515 Sum_probs=68.9
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
.||+||++|++||.+|+.++ .||||||||||+||+|+|||+|+|+||+||+|+..++.||++||+||+|+|
T Consensus 252 ~IN~SL~~L~~vi~al~~~~-~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 252 EINKSLLALKECIRALASNK-AHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred HHhHHHHHHHHHHHHHhcCC-CcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 49999999999999999987 899999999999999999999999999999999999999999999999985
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.82 E-value=5.7e-21 Score=180.53 Aligned_cols=75 Identities=56% Similarity=0.761 Sum_probs=71.8
Q ss_pred CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721 1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK 75 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~ 75 (290)
.||+||++|++||.+|..+++ .|||||+||||+||+++|||+++|+||+||+|...++.||++||+||.+|+.|+
T Consensus 265 ~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 265 SINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred HHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 489999999999999999764 799999999999999999999999999999999999999999999999999885
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.82 E-value=7.5e-21 Score=178.47 Aligned_cols=74 Identities=55% Similarity=0.691 Sum_probs=71.1
Q ss_pred CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
+||+||++|++||.+|++++ ..||||||||||+||+++|||+|+|+||+||+|...+++||++||+||.+++.|
T Consensus 247 ~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 247 FINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 59999999999999999985 589999999999999999999999999999999999999999999999999875
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.82 E-value=7.4e-21 Score=179.54 Aligned_cols=72 Identities=40% Similarity=0.569 Sum_probs=69.6
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
+||+||++|++||.+|++++..||||||||||+||+|+|||+|+|+||+||+|+..++.||++||+||.|++
T Consensus 263 ~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 263 YINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred hhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 599999999999999999877899999999999999999999999999999999999999999999999984
No 22
>KOG0246|consensus
Probab=99.81 E-value=1.5e-20 Score=182.00 Aligned_cols=77 Identities=34% Similarity=0.437 Sum_probs=73.2
Q ss_pred cchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCC-CCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 2 NIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGG-NARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 2 IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g-~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
|||||+||..||+||...+ .|+|||.||||.+|+|||-| |++||||+||||...+++.||+||+||.|+|.......
T Consensus 469 INKSLLALKECIRaLg~nk-~H~PFR~SKLTqVLRDSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 469 INKSLLALKECIRALGRNK-SHLPFRGSKLTQVLRDSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred hhHHHHHHHHHHHHhcCCC-CCCCchhhhHHHHHHHhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 9999999999999999987 89999999999999999988 99999999999999999999999999999998875544
No 23
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.81 E-value=2.3e-20 Score=175.59 Aligned_cols=75 Identities=43% Similarity=0.615 Sum_probs=72.6
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKN 76 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~ 76 (290)
.||+||++|++||.+|+.+. .|||||+|+||+||+++|||+++|.||+||||...+++||++||+||.+++.|++
T Consensus 254 ~in~Sl~~L~~vl~~l~~~~-~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~ 328 (329)
T cd01366 254 AINKSLSALGDVISALRSKD-SHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328 (329)
T ss_pred hhhhHHHHHHHHHHHHhcCC-CcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccC
Confidence 48999999999999999986 8999999999999999999999999999999999999999999999999999876
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.80 E-value=1.7e-20 Score=176.65 Aligned_cols=74 Identities=54% Similarity=0.808 Sum_probs=69.8
Q ss_pred CcchhHhHHHHHHHHHHcC-CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~-~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
+||+||++|++||.+|+.+ ...|||||+||||+||+|+|||+|+|+||+||+|+..+++||++||+||.+++.|
T Consensus 261 ~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 261 NINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred eecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 4899999999999999998 4499999999999999999999999999999999999999999999999999876
No 25
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.80 E-value=4e-20 Score=174.25 Aligned_cols=81 Identities=58% Similarity=0.720 Sum_probs=77.2
Q ss_pred CcchhHhHHHHHHHHHHcC-CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 1 MNIFACGALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~-~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
+||+||.+|++||.+|+++ +..|||||+|+||+||+++|+|+++|+||+||+|...+++||++||+||.++++|++.|+
T Consensus 254 ~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~ 333 (335)
T smart00129 254 NINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAI 333 (335)
T ss_pred hhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCC
Confidence 5899999999999999995 458999999999999999999999999999999999999999999999999999999997
Q ss_pred cC
Q psy5721 80 VN 81 (290)
Q Consensus 80 ~n 81 (290)
++
T Consensus 334 ~~ 335 (335)
T smart00129 334 VN 335 (335)
T ss_pred cC
Confidence 64
No 26
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.79 E-value=1.6e-18 Score=173.88 Aligned_cols=106 Identities=42% Similarity=0.515 Sum_probs=87.5
Q ss_pred CcchhHhHHHHHHHHHHc-CCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 1 MNIFACGALRNVISALAD-GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~-~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
+||+||.+||+||.+|.+ +...|||||+|||||+|+++|||+|+|+||+||+|+..+++||.+||+||++|+.|++.+.
T Consensus 262 ~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~ 341 (568)
T COG5059 262 SINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQ 341 (568)
T ss_pred hhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCccc
Confidence 699999999999999998 3348999999999999999999999999999999999999999999999999999999999
Q ss_pred cCc----cCCHHHHHHHHHHHHHHHHHHHHH
Q psy5721 80 VNE----ELTAEEWKRRYEKEKEKSSRYKGK 106 (290)
Q Consensus 80 ~n~----~~~~~~~~~~~~~~~~~~~~l~~~ 106 (290)
+|. ......+...+...+..+..+...
T Consensus 342 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 372 (568)
T COG5059 342 VNSSSDSSREIEEIKFDLSEDRSEIEILVFR 372 (568)
T ss_pred ccCcCcchHHHHHHHhhhhhhhhhhhhHHHH
Confidence 985 223334444333334444444433
No 27
>KOG0239|consensus
Probab=99.76 E-value=3e-19 Score=180.84 Aligned_cols=79 Identities=41% Similarity=0.552 Sum_probs=75.0
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||+... .||||||||||+||+++|||+++|.|+|+|||+..++.||+++|+||.|++.+...+..
T Consensus 568 ~INkSLS~LgdVi~AL~~k~-~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~ 646 (670)
T KOG0239|consen 568 NINKSLSALGDVISALASKR-SHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSAR 646 (670)
T ss_pred HhchhhhhhHHHHHHHhhcC-CCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccc
Confidence 39999999999999999976 99999999999999999999999999999999999999999999999999999876654
No 28
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.74 E-value=1.2e-18 Score=163.49 Aligned_cols=72 Identities=60% Similarity=0.749 Sum_probs=69.2
Q ss_pred CcchhHhHHHHHHHHHHcCC-CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADGN-KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~-~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
+||+||++|++||.+|+.+. ..|||||+||||+||+|+|+|+++|+||+||+|...++.||++||+||+|++
T Consensus 256 ~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 256 NINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 48999999999999999976 6899999999999999999999999999999999999999999999999985
No 29
>PRK11637 AmiB activator; Provisional
Probab=96.53 E-value=0.051 Score=53.21 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.++++..+.+++.+..++|......+..+..++...+..+..+...+...+.++..++.+++.++.++..++.++++...
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred hhhhhhhc
Q psy5721 254 TLLNFFRQ 261 (290)
Q Consensus 254 ~l~~~~~~ 261 (290)
.+....|.
T Consensus 125 ~l~~rlra 132 (428)
T PRK11637 125 LLAAQLDA 132 (428)
T ss_pred HHHHHHHH
Confidence 44444433
No 30
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.43 E-value=0.23 Score=49.91 Aligned_cols=90 Identities=21% Similarity=0.291 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLD---EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~---ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
.+..++.+...+...+. ....+++.+...+.+++..+......+.+...+...++.++..|..+.....++++++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 44444444444444443 333334444445555555555555555555566666666666666666556666666666
Q ss_pred HHhHHHhhhhhhh
Q psy5721 247 ALEEPTRTLLNFF 259 (290)
Q Consensus 247 ~LeE~~~~l~~~~ 259 (290)
+|+++...+.++.
T Consensus 387 ~l~~~~~~~~~~~ 399 (562)
T PHA02562 387 ELDKIVKTKSELV 399 (562)
T ss_pred HHHHHHHHHHHHH
Confidence 6665554444433
No 31
>PRK11637 AmiB activator; Provisional
Probab=95.84 E-value=0.26 Score=48.24 Aligned_cols=90 Identities=8% Similarity=0.140 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
.....+.+++++..+.+.+.+...++......+..+..++......+..+..++..++.++..++.++..++.++...+.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888777888888888888888888888888888888888888888888888888888888777
Q ss_pred HHhHHHhhhh
Q psy5721 247 ALEEPTRTLL 256 (290)
Q Consensus 247 ~LeE~~~~l~ 256 (290)
.+......+-
T Consensus 125 ~l~~rlra~Y 134 (428)
T PRK11637 125 LLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHH
Confidence 7776654443
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=95.80 E-value=0.34 Score=35.77 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.+++.+..|.+.-..+..|+.++.+.+++...+..++..+..+..+++.+-.+...+++.|...+++
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3455566666666667777777777777777777888888888888888888888888888777764
No 33
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=95.79 E-value=0.22 Score=36.90 Aligned_cols=70 Identities=26% Similarity=0.388 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.+...|.+||..|.++..+-++|..+-......+..++..+..++..+..+...++....++..+...+.
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3667889999999999999999888888888888777777777777777777777777777666666554
No 34
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.75 E-value=1.5 Score=41.48 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHhhhhhhhhc-cCCCCcchh
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE-PTRTLLNFFRQ-SSPKGTLLY 270 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE-~~~~l~~~~~~-~~~~~~~~~ 270 (290)
++.+--++.-+++++..++.|.+.++.-+..|...|+- ....++.+-.. +++.+|+|.
T Consensus 191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k~~~~~~k~~~~~~~~~~~v~s 250 (319)
T PF09789_consen 191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERKRKKGIIKLGNSASSNLTGVMS 250 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCCCccccccc
Confidence 46667788899999999999999999999999999994 45555644433 667777764
No 35
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.46 E-value=0.39 Score=42.60 Aligned_cols=72 Identities=14% Similarity=0.327 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
....++.++..++.+|.+.+.+.+ +....+.+++...+..+..+..+++.+.+++..++.+++.++.++..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666667666666655543 223333333444344444444444444444444444444443333333
No 36
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.33 E-value=2.4 Score=39.36 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5721 88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRNG 120 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~ 120 (290)
.+..++..-.++|+.|..+-..|+.++..++..
T Consensus 8 ~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 8 SLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 345566666778888888888888888877654
No 37
>KOG0971|consensus
Probab=95.27 E-value=1.7 Score=46.11 Aligned_cols=20 Identities=20% Similarity=0.391 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy5721 99 KSSRYKGKLEKLELELSRWR 118 (290)
Q Consensus 99 ~~~~l~~~i~~L~~el~~~~ 118 (290)
++..+++++..|+.+|..++
T Consensus 333 eve~lkEr~deletdlEILK 352 (1243)
T KOG0971|consen 333 EVEALKERVDELETDLEILK 352 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 38
>PRK09039 hypothetical protein; Validated
Probab=95.15 E-value=0.83 Score=43.63 Aligned_cols=64 Identities=14% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
..+.........+...++..+++.++.|+.++...+..+...+......+.++..+..+++.+.
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~ 185 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVAL 185 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555566666666666666666665555556666666666655544
No 39
>KOG0971|consensus
Probab=95.15 E-value=0.6 Score=49.27 Aligned_cols=93 Identities=25% Similarity=0.283 Sum_probs=76.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
...+.+.++......|+.+|.+-..+..+...--++++.+|.+.-+.+.-..-+.+.-++....||.|++++++++.+|.
T Consensus 266 qlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~dele 345 (1243)
T KOG0971|consen 266 QLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELE 345 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777788888888888777777777777777888888888887776667777778999999999999999999999
Q ss_pred HHHhHHHhhhhhh
Q psy5721 246 QALEEPTRTLLNF 258 (290)
Q Consensus 246 q~LeE~~~~l~~~ 258 (290)
-.||=+++.+-+.
T Consensus 346 tdlEILKaEmeek 358 (1243)
T KOG0971|consen 346 TDLEILKAEMEEK 358 (1243)
T ss_pred HHHHHHHHHHHhc
Confidence 9999888877665
No 40
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.13 E-value=2.4 Score=38.46 Aligned_cols=93 Identities=23% Similarity=0.273 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+...+.++...|...+.+..+++..++..+..++..+..++..+...+. .++.++..+..+.....++..+|...++
T Consensus 97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~---~~e~e~~~i~e~~~~~~~~~~~L~~~l~ 173 (239)
T COG1579 97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEA---RLEEEVAEIREEGQELSSKREELKEKLD 173 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3344455566666666666666666666666666666666555544333 3344566666666777777777777777
Q ss_pred HHHhhhhhhhhccCCC
Q psy5721 250 EPTRTLLNFFRQSSPK 265 (290)
Q Consensus 250 E~~~~l~~~~~~~~~~ 265 (290)
......-+.+|-...+
T Consensus 174 ~ell~~yeri~~~~kg 189 (239)
T COG1579 174 PELLSEYERIRKNKKG 189 (239)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 7666666666655433
No 41
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=95.09 E-value=1.9 Score=45.51 Aligned_cols=135 Identities=19% Similarity=0.241 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHH
Q psy5721 97 KEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEE 176 (290)
Q Consensus 97 ~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~e 176 (290)
-..+..|..-+..++.++..+++.......+........+ ........+..
T Consensus 237 d~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r~~~~k~le-----------------------------~~~s~~~~mK~ 287 (775)
T PF10174_consen 237 DTKIASLERMLRDLEDEIYRLRSRGELSEADRDRLDKQLE-----------------------------VYKSHSLAMKS 287 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHH-----------------------------HHHhhHHHHHH
Confidence 3456677777777788888777654444333221100000 00111112333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
++..+..+|..++.+|..+...++.+..+..+....+..+...+...+.+...||.+++++..++.+-...++.+..++.
T Consensus 288 k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~ 367 (775)
T PF10174_consen 288 KMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIE 367 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666666666666666666666666666666666666666666666666666666666666666666666655555
Q ss_pred hhhh
Q psy5721 257 NFFR 260 (290)
Q Consensus 257 ~~~~ 260 (290)
.++.
T Consensus 368 ~~qe 371 (775)
T PF10174_consen 368 KLQE 371 (775)
T ss_pred HHHH
Confidence 5543
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.08 E-value=1.9 Score=45.12 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ 204 (290)
...+++++.++.+|+..|..+++.+..++..+..++.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~ 580 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQELRK 580 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999998888866554
No 43
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.03 E-value=1.5 Score=36.56 Aligned_cols=86 Identities=26% Similarity=0.346 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.-.+..+.|...+...+.++..+...+++|+.++...+..++........++.++..++..+...++++..+...+...
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666777788888888888888899999888888888888888888888888888888888888888777777666
Q ss_pred Hhhhhh
Q psy5721 252 TRTLLN 257 (290)
Q Consensus 252 ~~~l~~ 257 (290)
..+.-+
T Consensus 128 ~tq~~~ 133 (151)
T PF11559_consen 128 KTQYEH 133 (151)
T ss_pred HHHHHH
Confidence 655444
No 44
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.01 E-value=0.46 Score=41.52 Aligned_cols=83 Identities=20% Similarity=0.309 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
..+...+...+..+...|..+...+..|+.++.+.+..+....+.++.+..++..|+.++..++++.+.++.+-.++...
T Consensus 101 ~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 101 NDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVER 180 (194)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777777777777777777788888888888888888888888888888888888888877777665
Q ss_pred hhh
Q psy5721 255 LLN 257 (290)
Q Consensus 255 l~~ 257 (290)
...
T Consensus 181 wm~ 183 (194)
T PF08614_consen 181 WMQ 183 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.99 E-value=1.6 Score=36.44 Aligned_cols=59 Identities=17% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 201 KLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 201 klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.+..+....+..+..+..++..+..++..+..+++++..+...|.+.++++...+.++.
T Consensus 42 ~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 42 CLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444455555555555555555555555555555554444443
No 46
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.94 E-value=1.4 Score=36.73 Aligned_cols=42 Identities=31% Similarity=0.366 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
++.+...+..|..+++.....+++....|.+......++-|+
T Consensus 75 ~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 75 AEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 446677777777777777777777777777777777776664
No 47
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.85 E-value=2 Score=40.38 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~ 228 (290)
.++..|...|..|-++...+...|..|..++.+.+..+....-+++.+...+.
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~ 265 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQ 265 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34555555666666666666666666666665555555555444444444433
No 48
>KOG1853|consensus
Probab=94.83 E-value=3.1 Score=37.99 Aligned_cols=88 Identities=22% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+++++.....++++....+.++.+.....+.+++-+.+.+.....+++......--+..+...++.+-+.+.-|+.+|+|
T Consensus 79 Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdE 158 (333)
T KOG1853|consen 79 KEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDE 158 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555556666666666666666665555555554444444443333222222222333333333334444444444444
Q ss_pred HHhhhhhh
Q psy5721 251 PTRTLLNF 258 (290)
Q Consensus 251 ~~~~l~~~ 258 (290)
+...+..+
T Consensus 159 ke~llesv 166 (333)
T KOG1853|consen 159 KEVLLESV 166 (333)
T ss_pred HHHHHHHH
Confidence 44443333
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.77 E-value=0.84 Score=40.51 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
....+...+++++.+..++++...+... +...+..+.+......+..++++..+|..++..++.++..+..+++.+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777777777777766554433 3333344445555555555666666666666666666666666655555
Q ss_pred hhhhhhhhccCCCCcchhhhhhcc
Q psy5721 253 RTLLNFFRQSSPKGTLLYNHYLLG 276 (290)
Q Consensus 253 ~~l~~~~~~~~~~~~~~~~~~~~~ 276 (290)
..+.- +--=-+|+++-.-.++|
T Consensus 167 ~~~~~--~wf~~Gg~v~~~GlllG 188 (206)
T PRK10884 167 RTIIM--QWFMYGGGVAGIGLLLG 188 (206)
T ss_pred HHHHH--HHHHHchHHHHHHHHHH
Confidence 33221 11113455555544554
No 50
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.76 E-value=2.6 Score=36.87 Aligned_cols=73 Identities=19% Similarity=0.208 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 189 DEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 189 d~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
++++..++..+..+.++-...-.....++++++.+..++..||.++..+..+...++....++...-..+++|
T Consensus 66 ~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 66 EEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 3444444444444433333333333333444444444444444444444444444444444444444444433
No 51
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=94.76 E-value=0.82 Score=42.91 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
...+++++..+-.-...+.|.+-..+.-.+.-|+..+.+.++.+..+.+++.....++.++....+.++.++.+|+.+|.
T Consensus 85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665556678889999999999999999999999999999999998888999999999999999999999998
Q ss_pred HHHhhh
Q psy5721 250 EPTRTL 255 (290)
Q Consensus 250 E~~~~l 255 (290)
+....|
T Consensus 165 ~rdeli 170 (302)
T PF09738_consen 165 QRDELI 170 (302)
T ss_pred HHHHHH
Confidence 887666
No 52
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=94.66 E-value=1.2 Score=36.15 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
+|..+|..++.++..+...+..+..+-....+.+
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333
No 53
>KOG0977|consensus
Probab=94.62 E-value=1.9 Score=43.57 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy5721 88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETV 123 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~ 123 (290)
.+..++..-.++|+.|.++-..|+.++..++++.+.
T Consensus 46 ~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~ 81 (546)
T KOG0977|consen 46 ELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGR 81 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 445566666678888888888888888888765433
No 54
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.55 E-value=2.3 Score=46.17 Aligned_cols=19 Identities=16% Similarity=0.223 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 93 YEKEKEKSSRYKGKLEKLE 111 (290)
Q Consensus 93 ~~~~~~~~~~l~~~i~~L~ 111 (290)
+......+..+...+..++
T Consensus 260 l~~~~~~~~~~~~~~~~~~ 278 (1164)
T TIGR02169 260 ISELEKRLEEIEQLLEELN 278 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 55
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.51 E-value=1.5 Score=41.31 Aligned_cols=88 Identities=25% Similarity=0.258 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+.+++..+...-.+..+++..+++..+.+.+++.+.+.....+..+...+-.+...++.++....++...+..+++-.
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444444444444444444455555555555555555555544
Q ss_pred Hhhhhhhh
Q psy5721 252 TRTLLNFF 259 (290)
Q Consensus 252 ~~~l~~~~ 259 (290)
..+|..+.
T Consensus 126 ~~~L~~L~ 133 (314)
T PF04111_consen 126 SNQLDRLR 133 (314)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 44444444
No 56
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=94.43 E-value=1.4 Score=44.41 Aligned_cols=17 Identities=18% Similarity=0.395 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 229 RLTQENESAKEEVKEVL 245 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~ 245 (290)
.|..++.....++.+|+
T Consensus 210 ~L~~q~~e~~~ri~~LE 226 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 57
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=94.38 E-value=6.3 Score=39.56 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN-----------ESAK 238 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~-----------~~~~ 238 (290)
.+.-|+.++.+|-.+++..|........+...|...+...+.....+..++......+.+|+.|+ ..+.
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 35567789999999999999888888888888877776666665556666666666666666655 5566
Q ss_pred HHHHHHHHHHhHHHhhhhhhh
Q psy5721 239 EEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 239 ~e~kel~q~LeE~~~~l~~~~ 259 (290)
+++-.|...|......|..+-
T Consensus 494 EHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 494 EHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 677777777777776666655
No 58
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.27 E-value=1.2 Score=38.97 Aligned_cols=77 Identities=22% Similarity=0.315 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..+..+.......|.....++..+...+..+..++.+....+..+..++..++-++..+...+..++.|+++|-+-.
T Consensus 105 ~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 105 QELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555554433
No 59
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=94.20 E-value=3.2 Score=45.10 Aligned_cols=30 Identities=10% Similarity=0.206 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 230 LTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+..++..+..++..+..++.++...+..+.
T Consensus 460 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~l~ 489 (1164)
T TIGR02169 460 LAADLSKYEQELYDLKEEYDRVEKELSKLQ 489 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444444443
No 60
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.19 E-value=2.9 Score=34.90 Aligned_cols=80 Identities=25% Similarity=0.307 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
...++.++..|...|..-...........+..+..+...+..+..+..+...++.++..+..+.+.+.+..++.+..+.+
T Consensus 19 ~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~e 98 (140)
T PF10473_consen 19 KDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSE 98 (140)
T ss_pred HhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444433333334444444444444444444444444444444444444333333333333333
No 61
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.01 E-value=4.1 Score=38.25 Aligned_cols=32 Identities=31% Similarity=0.301 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 203 KEQIMEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 203 k~ql~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
.++...|.+.++.+..++..++.+...+-.|+
T Consensus 226 ~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~En 257 (306)
T PF04849_consen 226 TEENRRQQEEITSLLSQIVDLQQRCKQLAAEN 257 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33334444444444444444444444333333
No 62
>KOG0250|consensus
Probab=93.91 E-value=2.2 Score=46.07 Aligned_cols=79 Identities=20% Similarity=0.343 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 181 LYQQLDEKDEEINQQSQYA-EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~-~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+...++.+++.|....... ..+..++.+.+.++..+.++++++++.+..|..+.+...++.++.+.++....-.++.+.
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444444443333 444445555555566666666666666666666666665555555555544443333333
No 63
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.89 E-value=1.9 Score=40.63 Aligned_cols=87 Identities=31% Similarity=0.421 Sum_probs=73.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
...+.+.++.+...+.+.|.+.+.+-..+.+++..++.+..+.++.....-+....++-++..++.+.++++..+.-...
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566778888888999999888888888888888888888777777777788888888999999999999999999999
Q ss_pred HHhHHHh
Q psy5721 247 ALEEPTR 253 (290)
Q Consensus 247 ~LeE~~~ 253 (290)
.|+.+..
T Consensus 128 ~L~~L~k 134 (314)
T PF04111_consen 128 QLDRLRK 134 (314)
T ss_dssp HHHCHHT
T ss_pred HHHHHHh
Confidence 9988874
No 64
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.86 E-value=3.2 Score=35.72 Aligned_cols=80 Identities=18% Similarity=0.359 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT-------QENESAKEEVKEVLQA 247 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq-------~E~~~~~~e~kel~q~ 247 (290)
.++...+...+.+...++...+.......+.+...++.+..+......+..+...++ .+.+.....+..+.+.
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 173 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333333334444444444444444444444444 3444444444444443
Q ss_pred HhHHHhh
Q psy5721 248 LEEPTRT 254 (290)
Q Consensus 248 LeE~~~~ 254 (290)
++.+...
T Consensus 174 ~~~l~~~ 180 (191)
T PF04156_consen 174 LQQLEEK 180 (191)
T ss_pred HHHHHHH
Confidence 3333333
No 65
>KOG0999|consensus
Probab=93.78 E-value=4.3 Score=40.99 Aligned_cols=60 Identities=23% Similarity=0.292 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 201 KLKEQIMEQEELITTARRDYEQLQGEMTRLTQ----------ENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 201 klk~ql~~qee~~~~~~~e~~~l~~el~~lq~----------E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
+|+.++.+.+..-+.+-.+...++++.=.||. |.+.++.+++.+..+.+=+..++.+.+|
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555655555544444555555555444444 4477888888888888888888888775
No 66
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.75 E-value=2.2 Score=38.67 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q psy5721 191 EINQQSQYAEKLKE 204 (290)
Q Consensus 191 ei~~~~~~~~klk~ 204 (290)
++.+.+..+.++++
T Consensus 60 qv~~~e~ei~~~r~ 73 (239)
T COG1579 60 QVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 67
>KOG0977|consensus
Probab=93.68 E-value=2.9 Score=42.22 Aligned_cols=83 Identities=30% Similarity=0.442 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ-------IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q-------l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
.+.+++.++.+|..++++.........+.+...+.+ +.+.+-.+..+...+..++.++.+|..|+..+..++.
T Consensus 107 ~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~ 186 (546)
T KOG0977|consen 107 ERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELA 186 (546)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 455555555555555555544444443333322222 3344444455555566666666666666666666666
Q ss_pred HHHHHHhHHH
Q psy5721 243 EVLQALEEPT 252 (290)
Q Consensus 243 el~q~LeE~~ 252 (290)
.+..+|+.-.
T Consensus 187 ~~r~~ld~Et 196 (546)
T KOG0977|consen 187 RARKQLDDET 196 (546)
T ss_pred HHHHHHHHHH
Confidence 6655554433
No 68
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.49 E-value=2.6 Score=39.78 Aligned_cols=53 Identities=28% Similarity=0.497 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..++.++..+...+...++++..++.++..+..+.+....+..+++.++.++.
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445555555555555555555555555554444444
No 69
>PRK09039 hypothetical protein; Validated
Probab=93.47 E-value=1.9 Score=41.15 Aligned_cols=17 Identities=24% Similarity=0.079 Sum_probs=10.1
Q ss_pred EeeCCCCCChHhhhhhhhhh
Q psy5721 49 ICCSPASFNESETKSTLDFG 68 (290)
Q Consensus 49 ~~vsp~~~~~~EtlstL~fa 68 (290)
+.+.|. |...++||-..
T Consensus 13 ~~~wpg---~vd~~~~ll~~ 29 (343)
T PRK09039 13 VDYWPG---FVDALSTLLLV 29 (343)
T ss_pred CCCCch---HHHHHHHHHHH
Confidence 456664 66677766543
No 70
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.31 E-value=2.9 Score=42.22 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 187 ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
..+.++......+.+|+.+.++.......+..+.+.+..+...+...+..+++++..+
T Consensus 175 ~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 175 RLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444433333333334444444444443333333333333333
No 71
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.99 E-value=4.2 Score=44.10 Aligned_cols=10 Identities=10% Similarity=0.215 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q psy5721 100 SSRYKGKLEK 109 (290)
Q Consensus 100 ~~~l~~~i~~ 109 (290)
+..+...+..
T Consensus 686 ~~~l~~~l~~ 695 (1179)
T TIGR02168 686 IEELEEKIAE 695 (1179)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 72
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=92.94 E-value=4.3 Score=44.01 Aligned_cols=15 Identities=13% Similarity=0.215 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHhHH
Q psy5721 237 AKEEVKEVLQALEEP 251 (290)
Q Consensus 237 ~~~e~kel~q~LeE~ 251 (290)
+..++..+..++.++
T Consensus 829 l~~~~~~l~~~~~~~ 843 (1179)
T TIGR02168 829 LERRIAATERRLEDL 843 (1179)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 73
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.93 E-value=3.7 Score=38.80 Aligned_cols=59 Identities=14% Similarity=0.197 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
+...+..+.....++.....++..++.+++.+++++.++..+..++...|-+..|....
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666677777777778888888888888888888888887766543
No 74
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.89 E-value=2.9 Score=42.56 Aligned_cols=81 Identities=27% Similarity=0.349 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT---TARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~---~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..+.+..++|.......+.++..+...+++|+.++........ ...++++.++.++..|..++...+.++.+|...|
T Consensus 425 ~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l 504 (652)
T COG2433 425 KKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKL 504 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555544433321 2246777788888888888888888888888888
Q ss_pred hHHH
Q psy5721 249 EEPT 252 (290)
Q Consensus 249 eE~~ 252 (290)
.++.
T Consensus 505 ~~l~ 508 (652)
T COG2433 505 AELR 508 (652)
T ss_pred HHHH
Confidence 8776
No 75
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.73 E-value=4.2 Score=35.65 Aligned_cols=81 Identities=26% Similarity=0.415 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
....++...+..++.+++.+....+..+.+++..+.+.++....+....+....++.+++...+++++++..+..+.+..
T Consensus 106 ~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 106 EKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666555555566666666666666666666666666677788888888888888888877766554
Q ss_pred H
Q psy5721 252 T 252 (290)
Q Consensus 252 ~ 252 (290)
+
T Consensus 186 ~ 186 (190)
T PF05266_consen 186 A 186 (190)
T ss_pred h
Confidence 3
No 76
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.71 E-value=3.1 Score=36.72 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCC
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~ 266 (290)
......++.++..+.-+.+.+.+....++++-+++....-..+..-.+++
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~ 141 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKT 141 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555544444443333333
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.49 E-value=3 Score=30.79 Aligned_cols=52 Identities=31% Similarity=0.363 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
++|..++...-+.++.++.+++.++++...+..++..+++++..+.++-+.-
T Consensus 7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444455555555555555555555555555555555444433
No 78
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.47 E-value=3.3 Score=43.28 Aligned_cols=38 Identities=29% Similarity=0.273 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL 212 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~ 212 (290)
..+.++|.....+..+....+......|+.++.+.+..
T Consensus 54 ~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~r 91 (717)
T PF09730_consen 54 QAENERLSQLNQELRKECEDLELERKRLREEIKEYKFR 91 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555444443
No 79
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=92.38 E-value=6.9 Score=40.99 Aligned_cols=33 Identities=27% Similarity=0.508 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.....++.++.+|+.|+...++.+..++.++.
T Consensus 544 r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666555555555555553
No 80
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.34 E-value=3.6 Score=40.26 Aligned_cols=86 Identities=12% Similarity=0.208 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL----EEP 251 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L----eE~ 251 (290)
++....++.+...+..|....+...+|..++.+++..+..++..+.....++..+...+......+..++.+. .-+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666666666666666666666666666666666666666666666555555544 345
Q ss_pred Hhhhhhhhhc
Q psy5721 252 TRTLLNFFRQ 261 (290)
Q Consensus 252 ~~~l~~~~~~ 261 (290)
+..|.-++|+
T Consensus 118 a~~L~A~~r~ 127 (420)
T COG4942 118 AEQLAALQRS 127 (420)
T ss_pred HHHHHHHHhc
Confidence 5667777776
No 81
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.26 E-value=3.3 Score=41.59 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.+.+.+..|......+..+..+....+..+..++.....+..++..+..+++.+..+..++..+...
T Consensus 338 ~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke~~~ 404 (562)
T PHA02562 338 KLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKEKYH 404 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444455555555555555555555555555555555554443
No 82
>PRK02224 chromosome segregation protein; Provisional
Probab=91.60 E-value=18 Score=38.59 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQL 185 (290)
Q Consensus 173 ~l~e~~~~L~~~L 185 (290)
.+..+...+...+
T Consensus 318 ~l~~k~~el~~~l 330 (880)
T PRK02224 318 ELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 83
>KOG1962|consensus
Probab=91.57 E-value=2.6 Score=37.65 Aligned_cols=77 Identities=23% Similarity=0.345 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 173 KLEEERERLYQQLDE---KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 173 ~l~e~~~~L~~~L~e---kd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.++++...+..++.- .+++.........+++.+++....++.........++.+.+.++.|.+.+.++...|+.+++
T Consensus 131 ~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 131 KAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 334444444444422 23444455556666666666666666666777777777777777777777777777776654
No 84
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.54 E-value=8.3 Score=35.13 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
..+....+.+...++..+.....+|...+..+.+++..+......+.......+........++.+....+..+..+...
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777777777777777777777777777666666444444455555555555665555555555555
Q ss_pred HhHHH
Q psy5721 248 LEEPT 252 (290)
Q Consensus 248 LeE~~ 252 (290)
+....
T Consensus 142 l~~~r 146 (302)
T PF10186_consen 142 LARRR 146 (302)
T ss_pred HHHHH
Confidence 55444
No 85
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=91.43 E-value=5.5 Score=30.87 Aligned_cols=93 Identities=22% Similarity=0.270 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.+...+......+..++..+-.++..+++.+.++..++...+.++-++.+..+.+..++..|...+..-.+-+..|.+.-
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~E 82 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKETE 82 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34566777788888888999999999999999999999988989989999999999999999999988888888888865
Q ss_pred hHHHhhhhhhhhc
Q psy5721 249 EEPTRTLLNFFRQ 261 (290)
Q Consensus 249 eE~~~~l~~~~~~ 261 (290)
.+....|.++.|+
T Consensus 83 ~~~~~~l~~~Eke 95 (96)
T PF08647_consen 83 KEFVRKLKNLEKE 95 (96)
T ss_pred HHHHHHHHHhhcc
Confidence 5666666666554
No 86
>KOG0995|consensus
Probab=91.30 E-value=18 Score=36.66 Aligned_cols=72 Identities=26% Similarity=0.349 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI---TTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~---~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
.+.+..+++.+...+.+++.+|+.++.+...|+.++..|.-.. ..+..+...++..+..++-+.+.+.+++-
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888899999999999999998888875443222 22223333444444444444444444333
No 87
>KOG0250|consensus
Probab=91.26 E-value=19 Score=39.20 Aligned_cols=68 Identities=19% Similarity=0.365 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
++.+..+.++.|+.+....+..+.++..+.+.+.+++..-+.+....+.++..+...++.....|-.+
T Consensus 395 ~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 395 ELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDL 462 (1074)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444443
No 88
>KOG0804|consensus
Probab=91.23 E-value=5.6 Score=39.12 Aligned_cols=26 Identities=15% Similarity=0.072 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 234 NESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 234 ~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+.+..+.+.+|+.+|-++...|..-+
T Consensus 430 ~~s~d~~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 430 LGSKDEKITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHHHHHhHheehhhhh
Confidence 34455555555555555555444433
No 89
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.23 E-value=4.4 Score=41.30 Aligned_cols=84 Identities=19% Similarity=0.271 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+.+.+..+...+...+.++..+...++.++.++...+.++..+.++... -.....+..+...++..|..+|.|.
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666667777777777777776666666666666554441 1122334455555666666666655
Q ss_pred Hhhhhhhh
Q psy5721 252 TRTLLNFF 259 (290)
Q Consensus 252 ~~~l~~~~ 259 (290)
...+..+-
T Consensus 494 ~~~ve~L~ 501 (652)
T COG2433 494 KKRVEELE 501 (652)
T ss_pred HHHHHHHH
Confidence 55544444
No 90
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.16 E-value=13 Score=34.53 Aligned_cols=65 Identities=22% Similarity=0.340 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ----ENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~----E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.+.....++..++.++......+..+...+..|+..+..++. +.+.+...+..++.++.++...+
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 333333444444444444444444444444444444433332 22334444555555555544443
No 91
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=91.08 E-value=8.9 Score=42.47 Aligned_cols=11 Identities=18% Similarity=0.326 Sum_probs=6.3
Q ss_pred HHHHHHHHHHc
Q psy5721 8 ALRNVISALAD 18 (290)
Q Consensus 8 ~L~~vi~aL~~ 18 (290)
+-..||..|..
T Consensus 553 ~a~~~i~~lk~ 563 (1163)
T COG1196 553 VAKKAIEFLKE 563 (1163)
T ss_pred HHHHHHHHHhh
Confidence 34456666655
No 92
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.03 E-value=2.5 Score=43.03 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCC
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPN 279 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 279 (290)
.+......+.+.+++..+..+-..+.+.+..+.....+....|..+....+.-+..+-.|.+-|-|.
T Consensus 378 ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~ 444 (569)
T PRK04778 378 YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPE 444 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcH
Confidence 3444455555555555555555555555555555555555556665555555455555555555553
No 93
>KOG4673|consensus
Probab=90.84 E-value=4 Score=42.17 Aligned_cols=32 Identities=41% Similarity=0.502 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 183 QQLDEKDEEINQQSQYAEKLKEQIMEQEELIT 214 (290)
Q Consensus 183 ~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~ 214 (290)
..|.+||+.|+++-.+=++|-++...+...|.
T Consensus 446 DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIk 477 (961)
T KOG4673|consen 446 DELAEKDEIINQLMAEGEKLSKKQLAQSAIIK 477 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 36677888888877666666665555444443
No 94
>KOG0161|consensus
Probab=90.82 E-value=9.3 Score=44.24 Aligned_cols=82 Identities=21% Similarity=0.332 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+......|..++..++.++.++...++.....+......+..+...+..+.+++.........++....+|..+++++..
T Consensus 1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555544444444444444444444444444444444444444444444444444443
Q ss_pred hh
Q psy5721 254 TL 255 (290)
Q Consensus 254 ~l 255 (290)
.|
T Consensus 1140 ~L 1141 (1930)
T KOG0161|consen 1140 EL 1141 (1930)
T ss_pred HH
Confidence 33
No 95
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=90.67 E-value=14 Score=35.00 Aligned_cols=31 Identities=39% Similarity=0.527 Sum_probs=17.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQ 197 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~ 197 (290)
+.+....+..++..|++.+.+...+|.-++.
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~ 107 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLRE 107 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 3344455666666666666665555544443
No 96
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.49 E-value=10 Score=35.73 Aligned_cols=55 Identities=7% Similarity=0.105 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
..++.+.....++.....++..++.++...+..+.+...+..+....|-+..++.
T Consensus 208 ~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 208 RAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555555555555555555555555555544
No 97
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.49 E-value=4.2 Score=37.44 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCCccc
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSE 282 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (290)
+.++..++...+.++..++.+.+.+++.+.+.+.-|.+... .++. .+++--|.-.+||--+-++
T Consensus 68 ~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raR---Amq~---nG~~t~Yidvil~SkSfsD 131 (265)
T COG3883 68 IDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRAR---AMQV---NGTATSYIDVILNSKSFSD 131 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---cCChhHHHHHHHccCcHHH
Confidence 33333444444444444444444444444444444443332 2222 2333346777777665554
No 98
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.31 E-value=11 Score=32.29 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.....+.-+...|...++++..++..+...+...-..+...++++.....+...+..++...+..+..+++++..+..+.
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r 121 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKER 121 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777888888899999999988888777777777777777777777777777777777777777777777777777
Q ss_pred hHHHhhhhhhhhcc
Q psy5721 249 EEPTRTLLNFFRQS 262 (290)
Q Consensus 249 eE~~~~l~~~~~~~ 262 (290)
+.+......+..+.
T Consensus 122 ~k~~~~~~~l~~~~ 135 (177)
T PF13870_consen 122 DKLRKQNKKLRQQG 135 (177)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777665443
No 99
>KOG0161|consensus
Probab=90.30 E-value=7 Score=45.17 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL 212 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~ 212 (290)
.++..+++.+..+...++..+++.+++.....++..++.+.+..
T Consensus 985 kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~ 1028 (1930)
T KOG0161|consen 985 KEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVT 1028 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777766666666555555444333
No 100
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=90.28 E-value=10 Score=36.16 Aligned_cols=19 Identities=21% Similarity=0.050 Sum_probs=9.0
Q ss_pred HHHHHHHhHHHhhhhhhhh
Q psy5721 242 KEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 242 kel~q~LeE~~~~l~~~~~ 260 (290)
..+..++.+....+.....
T Consensus 249 ~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 249 TEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554443
No 101
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.23 E-value=8.2 Score=36.63 Aligned_cols=75 Identities=25% Similarity=0.255 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..+|+.+-+..-.++-.......+.+......|..+..+++++..++-+++.++++.-..+++...|.++|.|..
T Consensus 101 ~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~l 175 (401)
T PF06785_consen 101 SEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEAL 175 (401)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHH
Confidence 344444444445555555556666666666677777777777777777777777777666666666666665543
No 102
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.18 E-value=4 Score=36.64 Aligned_cols=75 Identities=21% Similarity=0.274 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+.+....+...+++..++-..+...++.+..++.+..+.+.+++.++..+++.+.++--+...++....+|...+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~ 207 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGV 207 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccc
Confidence 334444455555555555555556666666666666666666666666666666666666666666655555543
No 103
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.17 E-value=6.4 Score=29.51 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 182 ~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
...+...-+.|.-+.-+++.+|++.....+....+......+..+...++.+-.+-.+.++.|.-.++
T Consensus 10 E~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGkm~ 77 (79)
T PRK15422 10 EAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333444444445555555544444444444444445666666666666666666666655544
No 104
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.16 E-value=6.4 Score=36.42 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
+..|+..|.+-+..+.....+|..|+.||....+.+
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555554444444
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.10 E-value=12 Score=32.73 Aligned_cols=50 Identities=12% Similarity=0.200 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 205 QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 205 ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
++.+.+..+..++.....+..+...+..|+..+-.++..|+.+...+...
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e 117 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAE 117 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 33344444444444444444444444444433333333333333333333
No 106
>PRK03918 chromosome segregation protein; Provisional
Probab=90.08 E-value=7.6 Score=41.24 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=5.2
Q ss_pred eeCCCCCChH
Q psy5721 50 CCSPASFNES 59 (290)
Q Consensus 50 ~vsp~~~~~~ 59 (290)
|=.|-..++.
T Consensus 441 c~~~L~~~~~ 450 (880)
T PRK03918 441 CGRELTEEHR 450 (880)
T ss_pred CCCcCCchhH
Confidence 5556555443
No 107
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.90 E-value=26 Score=36.21 Aligned_cols=18 Identities=22% Similarity=0.566 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5721 88 EWKRRYEKEKEKSSRYKG 105 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~ 105 (290)
.|..+...+...+..|+.
T Consensus 26 ~~qqr~~qmseev~~L~e 43 (617)
T PF15070_consen 26 QWQQRMQQMSEEVRTLKE 43 (617)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 108
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=89.82 E-value=9.2 Score=33.83 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTAR-------RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~-------~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
.+..|+.+|-.++..+...+..+...+..+..+. .+++..+.++.+...+.+-+++.+..+..++.++...+.
T Consensus 25 E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~ 104 (202)
T PF06818_consen 25 EVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELA 104 (202)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333 244444555555555556666777777777777776666
Q ss_pred hh
Q psy5721 257 NF 258 (290)
Q Consensus 257 ~~ 258 (290)
..
T Consensus 105 ~~ 106 (202)
T PF06818_consen 105 CA 106 (202)
T ss_pred hh
Confidence 65
No 109
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=89.78 E-value=17 Score=34.04 Aligned_cols=59 Identities=19% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 194 QQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 194 ~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+.+.......+|...-.....++.+.+.+.+++..+....+....+...++..|.++.
T Consensus 183 ~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~ 241 (294)
T COG1340 183 ELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELE 241 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444444444444444433
No 110
>KOG0996|consensus
Probab=89.74 E-value=5.1 Score=43.74 Aligned_cols=42 Identities=12% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
+.++....+-+..+..+....+.++..+.+...++....+++
T Consensus 976 ~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~ 1017 (1293)
T KOG0996|consen 976 EKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDI 1017 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 333333333333444444444444444555555555433333
No 111
>KOG0976|consensus
Probab=89.58 E-value=4.1 Score=42.81 Aligned_cols=29 Identities=31% Similarity=0.140 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 237 AKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 237 ~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
.+.++.+-+..++-....+..+.-|+|--
T Consensus 415 ~kneL~~a~ekld~mgthl~mad~Q~s~f 443 (1265)
T KOG0976|consen 415 AKNELQEALEKLDLMGTHLSMADYQLSNF 443 (1265)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhH
Confidence 33334444444444444444444555443
No 112
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=89.48 E-value=8.1 Score=30.67 Aligned_cols=33 Identities=24% Similarity=0.472 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
|..-+..|+.++.+..+.+.+|+..+.|+-.++
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555544444444433
No 113
>KOG0243|consensus
Probab=89.37 E-value=25 Score=38.24 Aligned_cols=83 Identities=23% Similarity=0.441 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
....+.++...+...|+.+..++......+.+++.+|...++.++.+...-..+......++..++.....+..+-..|+
T Consensus 477 ~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld 556 (1041)
T KOG0243|consen 477 IKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLD 556 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45567778888888888888899888888999988888888888887777777777788888888888888888877777
Q ss_pred HHH
Q psy5721 250 EPT 252 (290)
Q Consensus 250 E~~ 252 (290)
.+.
T Consensus 557 ~~~ 559 (1041)
T KOG0243|consen 557 RKD 559 (1041)
T ss_pred hhh
Confidence 766
No 114
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=89.25 E-value=6.2 Score=37.53 Aligned_cols=40 Identities=23% Similarity=0.362 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhcc
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLG 276 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (290)
...+.+++++..+.+....+.++. ..-|++.=+|....||
T Consensus 65 e~~~~i~~L~~~Ik~r~~~l~DmE-a~LPkkNGlyL~liLG 104 (330)
T PF07851_consen 65 EERELIEKLEEDIKERRCQLFDME-AFLPKKNGLYLRLILG 104 (330)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHH-hhCCCCCCcccceecc
Confidence 346677888888888888999988 4446666668888999
No 115
>PRK03918 chromosome segregation protein; Provisional
Probab=89.25 E-value=10 Score=40.24 Aligned_cols=11 Identities=27% Similarity=0.314 Sum_probs=5.6
Q ss_pred CCCCCCCChhh
Q psy5721 22 THIPYRDSKLT 32 (290)
Q Consensus 22 ~~vPyRdSkLT 32 (290)
++.|...++|+
T Consensus 436 ~~Cp~c~~~L~ 446 (880)
T PRK03918 436 GKCPVCGRELT 446 (880)
T ss_pred CCCCCCCCcCC
Confidence 45555544443
No 116
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=89.21 E-value=7.8 Score=29.12 Aligned_cols=54 Identities=28% Similarity=0.408 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~ 235 (290)
..+..+-++.+..|+++-+++..++..+-+.+.....++ +.+++++.+|..+++
T Consensus 21 ~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK---~~YEeEI~rLr~eLe 74 (79)
T PF08581_consen 21 NSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK---QQYEEEIARLRRELE 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 333334455555555555555555555544444433322 223444444444443
No 117
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=89.11 E-value=15 Score=34.64 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 198 YAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 198 ~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
++.+++.++..+...+......+..++.++..+...+++...+..++..++.++..
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777777777777777777777777777777777777766665
No 118
>PRK02224 chromosome segregation protein; Provisional
Probab=89.04 E-value=21 Score=38.08 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHHHHhHHHh
Q psy5721 241 VKEVLQALEEPTR 253 (290)
Q Consensus 241 ~kel~q~LeE~~~ 253 (290)
+.+++..++++..
T Consensus 414 l~~l~~~~~~l~~ 426 (880)
T PRK02224 414 LEELREERDELRE 426 (880)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 119
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=89.02 E-value=9.7 Score=30.02 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
.-|++-..+-......+...+...+..+.+++.|++++.-.+..|....+.+...+.
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444555555555555555555555555555555555555554444
No 120
>KOG4005|consensus
Probab=88.92 E-value=2.9 Score=37.75 Aligned_cols=57 Identities=28% Similarity=0.212 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
-|..+.+.++.+..+.+++++|+.+...|++.++.+--++.++-+.|+++...|-++
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 344455556666666666666666666666666666555666665555555554443
No 121
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.91 E-value=8.8 Score=40.21 Aligned_cols=83 Identities=22% Similarity=0.220 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
+.+.+...+.+.+.++.+.+..+...+.+..........+....+.++.+..+|..++..++..-..+.+.-.|+..--|
T Consensus 28 ~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 28 KEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444444444444444444444444444443333333444444444444444444443333333333333333333333
Q ss_pred hhh
Q psy5721 257 NFF 259 (290)
Q Consensus 257 ~~~ 259 (290)
.+|
T Consensus 108 slQ 110 (717)
T PF09730_consen 108 SLQ 110 (717)
T ss_pred HHH
Confidence 333
No 122
>PRK09343 prefoldin subunit beta; Provisional
Probab=88.89 E-value=11 Score=30.45 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT 267 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~ 267 (290)
-...+.+++.-+..++..++.....++..+.+...+|.++..+-+|+||
T Consensus 72 ~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 72 VEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 3345556666666777777777777888888888888888888888876
No 123
>KOG4657|consensus
Probab=88.63 E-value=18 Score=32.55 Aligned_cols=74 Identities=16% Similarity=0.232 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA-------RRDYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~-------~~e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
+..+..-...+-+++.+...+...+.+.+.....++...-+.+..- +.++..+++++..+..-++.++++...
T Consensus 39 r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 39 RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4444444444444666666666666666666665555444443333 333444444444444444444444333
Q ss_pred H
Q psy5721 244 V 244 (290)
Q Consensus 244 l 244 (290)
+
T Consensus 119 ~ 119 (246)
T KOG4657|consen 119 S 119 (246)
T ss_pred H
Confidence 3
No 124
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.55 E-value=6.5 Score=38.53 Aligned_cols=96 Identities=16% Similarity=0.250 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.+.....+++.+...+.+-.++..++..++.+++.++...+..+.....++..+..++..+...+..++.+-.+=...|.
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La 118 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLA 118 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555444444444555
Q ss_pred HHHhhhhhhhhccCCC
Q psy5721 250 EPTRTLLNFFRQSSPK 265 (290)
Q Consensus 250 E~~~~l~~~~~~~~~~ 265 (290)
+.-..+--+-|-++|.
T Consensus 119 ~~L~A~~r~g~~p~~~ 134 (420)
T COG4942 119 EQLAALQRSGRNPPPA 134 (420)
T ss_pred HHHHHHHhccCCCCch
Confidence 5554444444444443
No 125
>KOG2010|consensus
Probab=88.53 E-value=4.5 Score=38.19 Aligned_cols=85 Identities=20% Similarity=0.270 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+++++..+..--..+.|.+-+.+-=.+.-||..|.++++.++...++.+.+..++.++....+++.....+|+++|....
T Consensus 123 EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QRd 202 (405)
T KOG2010|consen 123 EVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQRD 202 (405)
T ss_pred HHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44454444444445556666666667788999999999999999999999999999999999999999999999998888
Q ss_pred hhhhh
Q psy5721 253 RTLLN 257 (290)
Q Consensus 253 ~~l~~ 257 (290)
..|.+
T Consensus 203 eliee 207 (405)
T KOG2010|consen 203 ELIEE 207 (405)
T ss_pred HHHHH
Confidence 87776
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.36 E-value=17 Score=32.93 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 189 DEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 189 d~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
..++..++..+.++...+..++..+
T Consensus 62 ~~e~e~L~~~~~~l~~~v~~q~~el 86 (251)
T PF11932_consen 62 EREIENLEVYNEQLERQVASQEQEL 86 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 127
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=88.35 E-value=19 Score=32.41 Aligned_cols=56 Identities=32% Similarity=0.446 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
..|..++...+......++.+..|+..+..|..++...+...+.+..+|+..-.-|
T Consensus 179 ~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 179 RDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444445555555555666667777777777777777777777777666544433
No 128
>PRK04863 mukB cell division protein MukB; Provisional
Probab=88.34 E-value=29 Score=39.55 Aligned_cols=10 Identities=40% Similarity=0.604 Sum_probs=5.3
Q ss_pred hhhhhchhhc
Q psy5721 30 KLTRILQESL 39 (290)
Q Consensus 30 kLT~lL~~~l 39 (290)
.+|+.+.+|+
T Consensus 212 ~i~~fl~~yl 221 (1486)
T PRK04863 212 AITRSLRDYL 221 (1486)
T ss_pred hHHHHHHHHc
Confidence 4455555555
No 129
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=88.32 E-value=23 Score=33.42 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 228 TRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q~LeE 250 (290)
++|+...+.+..+.+.|+..|+.
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc
Confidence 35566666666677766666655
No 130
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.90 E-value=18 Score=31.76 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKL 202 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~kl 202 (290)
.+....+...+.+++.++......+.+|
T Consensus 81 q~~~r~~~~klk~~~~el~k~~~~l~~L 108 (194)
T PF15619_consen 81 QEQERELERKLKDKDEELLKTKDELKHL 108 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554444433
No 131
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=87.90 E-value=12 Score=41.75 Aligned_cols=66 Identities=29% Similarity=0.455 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchh----hhhhccCCCcccch
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY----NHYLLGWPNQSERV 284 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 284 (290)
.....++.+...++.+.+.+..+++.+.++++++...+.+++++.+|.+|=|+ .| .-||-+.-.+|
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~-~p~We~tIGKV 559 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKN-KPGWEQTIGKV 559 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhC-CCcHHHHhHhh
Confidence 33444445555556666777888888999999999999999999998877553 33 46786654443
No 132
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=87.73 E-value=9.6 Score=28.40 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD 219 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e 219 (290)
-++...|...|.++++||..+...+..++.++....+....++.+
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~ 48 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQ 48 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888888888888888888877776555554443333
No 133
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.71 E-value=20 Score=34.15 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcch
Q psy5721 234 NESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLL 269 (290)
Q Consensus 234 ~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~ 269 (290)
+.....++..++..++.....+.. -..-+|-.|.+
T Consensus 248 l~~~~~~l~~~~~~l~~~~~~l~~-~~i~AP~dG~V 282 (423)
T TIGR01843 248 LTEAQARLAELRERLNKARDRLQR-LIIRSPVDGTV 282 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-cEEECCCCcEE
Confidence 355677888888888777766544 44555655544
No 134
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.62 E-value=16 Score=38.48 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 230 LTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
+..|++.++.+++.|...++++++.+.-.+++
T Consensus 637 ~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~ 668 (717)
T PF10168_consen 637 FKKELERMKDQLQDLKASIEQLKKKLDYQQRQ 668 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666777777777766665544443
No 135
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=87.55 E-value=25 Score=32.94 Aligned_cols=91 Identities=20% Similarity=0.347 Sum_probs=62.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDE------EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~------ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
+++..-..+.+++..|..+|...+. .+..+...+..++.+..+.-+.+..+..+.+.+.++|..+-.+.+.++.
T Consensus 128 L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rk 207 (294)
T COG1340 128 LTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRK 207 (294)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777778877766553 3333445566666677777777788888888888888888877777777
Q ss_pred HHHHHHHHHhHHHhhhh
Q psy5721 240 EVKEVLQALEEPTRTLL 256 (290)
Q Consensus 240 e~kel~q~LeE~~~~l~ 256 (290)
+..++..+..+....+.
T Consensus 208 eade~he~~ve~~~~~~ 224 (294)
T COG1340 208 EADELHEEFVELSKKID 224 (294)
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 77777776666554443
No 136
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=87.48 E-value=11 Score=33.41 Aligned_cols=85 Identities=24% Similarity=0.267 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-------EMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-------el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+|.-|.++|.+-..++++...+|..|+.++.+....+......+..+.. ++..++.|+...+.+..-+...+.
T Consensus 11 EIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~ 90 (202)
T PF06818_consen 11 EISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLG 90 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhh
Confidence 3555666666666666666666666666666666665555555555544 233333344444444444444444
Q ss_pred HHHhhhhhhhhc
Q psy5721 250 EPTRTLLNFFRQ 261 (290)
Q Consensus 250 E~~~~l~~~~~~ 261 (290)
.+...+..+.-.
T Consensus 91 ~le~El~~Lr~~ 102 (202)
T PF06818_consen 91 QLEAELAELREE 102 (202)
T ss_pred hhHHHHHHHHHH
Confidence 444444444433
No 137
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=87.47 E-value=27 Score=36.81 Aligned_cols=24 Identities=13% Similarity=0.302 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 93 YEKEKEKSSRYKGKLEKLELELSR 116 (290)
Q Consensus 93 ~~~~~~~~~~l~~~i~~L~~el~~ 116 (290)
+..++.++..|++++..|...|++
T Consensus 389 ~QplrsENaqLrRrLrilnqqlre 412 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLRE 412 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHH
Confidence 445566777888888888777765
No 138
>KOG0964|consensus
Probab=87.33 E-value=14 Score=39.90 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.++.++..+..++.+++++|..+...+...+.++.+......+..++.+.++.+-..++.|=.+++..+..+.+.|+...
T Consensus 415 ~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~ 494 (1200)
T KOG0964|consen 415 ILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAE 494 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhhhhh
Q psy5721 253 RTLLNF 258 (290)
Q Consensus 253 ~~l~~~ 258 (290)
.+|.+.
T Consensus 495 ~~L~~~ 500 (1200)
T KOG0964|consen 495 KNLRAT 500 (1200)
T ss_pred HHHHHh
Confidence 777654
No 139
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=87.13 E-value=22 Score=31.93 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+.+...++.|.+.|.+.........
T Consensus 172 ~~~e~~i~~L~~~lkeaE~Rae~aE 196 (237)
T PF00261_consen 172 DEYEEKIRDLEEKLKEAENRAEFAE 196 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555544444433
No 140
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=87.00 E-value=9.9 Score=27.76 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5721 179 ERLYQQL 185 (290)
Q Consensus 179 ~~L~~~L 185 (290)
..|+..|
T Consensus 8 ~~Lr~rL 14 (69)
T PF14197_consen 8 ATLRNRL 14 (69)
T ss_pred HHHHHHH
Confidence 3333333
No 141
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=86.99 E-value=14 Score=29.39 Aligned_cols=67 Identities=12% Similarity=0.215 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
.++...+.+...|.-.+..|+........|..+-.+.+.....+..+.......+..|+++++.+..
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555554444444444444444444444444444444444444433333
No 142
>PRK04406 hypothetical protein; Provisional
Probab=86.81 E-value=8.8 Score=28.48 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
++.|..-+.+.+.+++.+..+++.|.+.+.
T Consensus 27 Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 27 IEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444443
No 143
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.80 E-value=17 Score=30.19 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhHHHhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l 255 (290)
.+..+++.-..+++.++..|
T Consensus 130 q~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555443
No 144
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.77 E-value=6.2 Score=31.34 Aligned_cols=52 Identities=35% Similarity=0.514 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
|+..+.+.++.+..+...+..|+.+ +..+-++..+|+.||+.+++.+.++.+
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~--------------~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQ--------------LQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444444433 344444555556666666665555544
No 145
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.73 E-value=16 Score=33.26 Aligned_cols=47 Identities=26% Similarity=0.434 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKE-------EVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~-------e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
+..++..++.++.+|..+.+.... ++......+++....|.++...+
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~~~~~~~ 133 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELLEVMSAP 133 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 334444444444444444444444 44444444555555555555444
No 146
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=86.70 E-value=10 Score=27.67 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
++..+...+..+..++...+..+..+..+.+.....+...-.++..++.++..+..+
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334334344433333333333333333333333333333333333333333
No 147
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.53 E-value=13 Score=38.12 Aligned_cols=88 Identities=25% Similarity=0.370 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-----------------EMTRLTQENESA 237 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-----------------el~~lq~E~~~~ 237 (290)
+.+...|+.+|++....|......+..+...+......+.....+...++. -+.+|+.-.++.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444443333333333333333333 344555555666
Q ss_pred HHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 238 KEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 238 ~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
.+.+.+|.++-+....-|++--|..
T Consensus 407 ~~rl~~L~~qWe~~R~pL~~e~r~l 431 (594)
T PF05667_consen 407 EQRLVELAQQWEKHRAPLIEEYRRL 431 (594)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 6666666666666666555555443
No 148
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.42 E-value=5.7 Score=31.75 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221 (290)
Q Consensus 180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~ 221 (290)
.++..+...+..+..+...+..|+..+.+..++...++-+++
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555444444433333333
No 149
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.41 E-value=25 Score=31.90 Aligned_cols=91 Identities=18% Similarity=0.318 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.....+..++..+...+.++...+..+...+...+..+....................+......+......+..-...+
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l 149 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQL 149 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666677777777777777776666666666544444444444455555555555555555555555555555
Q ss_pred hHHHhhhhhhh
Q psy5721 249 EEPTRTLLNFF 259 (290)
Q Consensus 249 eE~~~~l~~~~ 259 (290)
-.....+-...
T Consensus 150 ~~~l~~ifpI~ 160 (302)
T PF10186_consen 150 IQELSEIFPIE 160 (302)
T ss_pred HHHHHHHhCce
Confidence 55555555554
No 150
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=86.26 E-value=6.3 Score=31.52 Aligned_cols=49 Identities=18% Similarity=0.255 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
..+..+.+++...-..+..+...+..+-++...|+.||+.+++.+.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555666666666666666666666677777777777777766653
No 151
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.14 E-value=51 Score=37.14 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 91 RRYEKEKEKSSRYKGKLEKLELELS 115 (290)
Q Consensus 91 ~~~~~~~~~~~~l~~~i~~L~~el~ 115 (290)
..+......+..+...+..++..+.
T Consensus 751 ~~l~~le~~l~~~~~~le~~~~~l~ 775 (1311)
T TIGR00606 751 NKLQKVNRDIQRLKNDIEEQETLLG 775 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333343444444444444444443
No 152
>KOG0976|consensus
Probab=86.08 E-value=15 Score=38.85 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+...++.-+..++.++.+-+-+|+.....+.++.++|-.....+-...+++.+...++..+..+....-.++.++..+++
T Consensus 121 ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le 200 (1265)
T KOG0976|consen 121 EKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALE 200 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555666666666666666666655554444443333333333333344444444333333333333333
Q ss_pred H
Q psy5721 250 E 250 (290)
Q Consensus 250 E 250 (290)
+
T Consensus 201 ~ 201 (1265)
T KOG0976|consen 201 E 201 (1265)
T ss_pred H
Confidence 3
No 153
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=85.99 E-value=23 Score=31.00 Aligned_cols=30 Identities=27% Similarity=0.339 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
+|+..-.||..++....+|+.+.++....+
T Consensus 49 rlQ~hl~EIR~LKe~NqkLqedNqELRdLC 78 (195)
T PF10226_consen 49 RLQQHLNEIRGLKEVNQKLQEDNQELRDLC 78 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666666666666555554
No 154
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.98 E-value=19 Score=30.00 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 86 AEEWKRRYEKEKEKSSRYKGKLEKLELELSRW 117 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~ 117 (290)
.+.+..+++.....++.+......++.++..+
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL 40 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENEQKEQEITSL 40 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666555443
No 155
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.94 E-value=15 Score=33.05 Aligned_cols=60 Identities=18% Similarity=0.224 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 192 INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 192 i~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.....+.+.|.+++.+.+-.+......++.++.++.+|..+...+-.++-.|...++|+
T Consensus 144 l~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 144 LEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 333333334444444444444444444444444444444444444444444444444443
No 156
>KOG4360|consensus
Probab=85.93 E-value=17 Score=36.50 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE 233 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E 233 (290)
.+.....+++..-.++..+.+.++.+...+..+++++.-+..|
T Consensus 213 q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~E 255 (596)
T KOG4360|consen 213 QARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHE 255 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333334444444444444455444444444444444443333
No 157
>KOG0996|consensus
Probab=85.89 E-value=30 Score=38.07 Aligned_cols=31 Identities=32% Similarity=0.450 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRW 117 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~ 117 (290)
..|.+...+.++..+.+...+..|+.++...
T Consensus 394 ~~~e~~~vk~~E~lK~~~~k~kKleke~ek~ 424 (1293)
T KOG0996|consen 394 QDLEREDVKREEKLKRLTSKIKKLEKEIEKA 424 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666666666666655543
No 158
>PRK02119 hypothetical protein; Provisional
Probab=85.85 E-value=8.3 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+.+.+++-.+..++.|..-+.+.+.+++.++.+++.|.+.|.+
T Consensus 13 ~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 13 ELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333334444444444444444444444444444444
No 159
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=85.85 E-value=18 Score=29.64 Aligned_cols=83 Identities=14% Similarity=0.349 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQ----SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~----~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
-|+.+..-.+.+-.+|++--+.+... .+.+..+-.++.++.+......++...+..++..+..+.+....-+..|.
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le 116 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLE 116 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666665555544443 34556666677777777777777777777777777777777777777777
Q ss_pred HHHhHHH
Q psy5721 246 QALEEPT 252 (290)
Q Consensus 246 q~LeE~~ 252 (290)
..+.+..
T Consensus 117 ~ki~~ie 123 (126)
T PF07889_consen 117 GKIDEIE 123 (126)
T ss_pred HHHHHHh
Confidence 6666554
No 160
>KOG4673|consensus
Probab=85.85 E-value=16 Score=37.90 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
.|+.+.++|.+.|+.|++.-..+..-+.++...+..+++.++..+-.+..++.++..+|+.+
T Consensus 499 ~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~ 560 (961)
T KOG4673|consen 499 KLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATN 560 (961)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh
Confidence 45556666777777776665566666677777777777777777767777777666666654
No 161
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=85.82 E-value=18 Score=31.63 Aligned_cols=67 Identities=25% Similarity=0.286 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
.+++++..-.....+.+.+|..++..+.+++.+.............++..++.....+..++...+.
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~ 180 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAEL 180 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444443333333333334444444444444444444333
No 162
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.74 E-value=44 Score=34.06 Aligned_cols=78 Identities=24% Similarity=0.339 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.+.+++..+...+......++........++.++.+..+.+.....+...+.+.+..+...-..+++.+..+...+.
T Consensus 351 ~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~ 428 (569)
T PRK04778 351 RQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLH 428 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554444444444444444444444444444444444444444444444444334444444443333
No 163
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=85.72 E-value=19 Score=38.22 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
...+..|+..|.-++.+.+.+...++.|+..+
T Consensus 321 r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 321 RQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444444444444444444444444444443
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.64 E-value=27 Score=31.54 Aligned_cols=55 Identities=13% Similarity=0.165 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR 229 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~ 229 (290)
+++++.+..+-.+...++..+..+++.++......+..+...+.++..++.++..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~ 95 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQ 95 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444444444333333
No 165
>KOG0980|consensus
Probab=85.38 E-value=57 Score=34.99 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=10.4
Q ss_pred HHHHHHHHhHHHhhhhhhhhc
Q psy5721 241 VKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 241 ~kel~q~LeE~~~~l~~~~~~ 261 (290)
..++-..++|+.+...+.+|.
T Consensus 542 ~~~~~~~~~e~~~~~~e~e~s 562 (980)
T KOG0980|consen 542 AAELVAREEEREALRLEAERS 562 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333444445555555555555
No 166
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=85.33 E-value=25 Score=31.72 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
..+..+...+.+..+....+.++..|+.-+++++.++..+
T Consensus 64 ~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 64 TLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443
No 167
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.22 E-value=19 Score=29.26 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
.+.+++++..|.-.+.+++...+.++..++++...|..+...--++
T Consensus 72 ~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~ 117 (119)
T COG1382 72 VDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANG 117 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 3344444445555555555555555555555555555555444333
No 168
>KOG0933|consensus
Probab=85.21 E-value=27 Score=37.85 Aligned_cols=56 Identities=16% Similarity=0.327 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
+.+.+++...+..+..+...+..+..++..+...+.....+++.++.+|.+..+.+
T Consensus 825 e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~ 880 (1174)
T KOG0933|consen 825 EELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQ 880 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444444444445555555555555555544433
No 169
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=85.02 E-value=8.7 Score=30.52 Aligned_cols=51 Identities=20% Similarity=0.295 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 203 KEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 203 k~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
-..+...+..+..+..++..+...+..+-.||..++-|+..|...|.+...
T Consensus 7 ~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 7 FDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345566666677777777788888888888888888888888887777665
No 170
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.91 E-value=27 Score=30.79 Aligned_cols=33 Identities=9% Similarity=0.122 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT 267 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~ 267 (290)
--++..+..|...|+.+.++|.+....+.+.++
T Consensus 146 ~lLEkKl~~l~~~lE~keaqL~evl~~~nldp~ 178 (201)
T PF13851_consen 146 LLLEKKLQALSEQLEKKEAQLNEVLAAANLDPA 178 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 446678888888899999999888887777665
No 171
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=84.79 E-value=28 Score=35.82 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYA 199 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~ 199 (290)
..+.+.+.+++..+..++...+.++..+...+
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~ 358 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKMLKSSL 358 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666655555555444333
No 172
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.64 E-value=9.7 Score=32.30 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI--MEQEELITTARRDYEQLQGEMTRLTQ 232 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql--~~qee~~~~~~~e~~~l~~el~~lq~ 232 (290)
++++...+..++..|+.++.+...++..+...+..|...+ .+....+..++.++..++.++..++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556677777788888888888888888777777777654 45555666666666666666666665
No 173
>KOG0933|consensus
Probab=84.54 E-value=66 Score=35.07 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 195 QSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 195 ~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
+++.+...++++...+..+..+..++..+..++...+.+...+.+
T Consensus 827 l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 827 LEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 333444444444444444444444444444443333333333333
No 174
>KOG2991|consensus
Probab=84.36 E-value=34 Score=31.52 Aligned_cols=194 Identities=19% Similarity=0.277 Sum_probs=108.9
Q ss_pred CCCCCCCChhhhhchhhcCC--CCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc------------ccc---CccC
Q psy5721 22 THIPYRDSKLTRILQESLGG--NARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV------------VTV---NEEL 84 (290)
Q Consensus 22 ~~vPyRdSkLT~lL~~~l~g--~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~------------~~~---n~~~ 84 (290)
.+||.-.++-|++|-|+..| .+...|--.+ ....--|.+..+++|.+-+.+.-+ |.+ ..-+
T Consensus 93 ~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~--~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~l 170 (330)
T KOG2991|consen 93 AYVQALEGKYTRLLSDDITNLKESEEKLKQQQ--QEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTL 170 (330)
T ss_pred HHHHHhcCcccchhHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence 57788888889999888765 1100000000 001123455566666654443311 111 0111
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccc
Q psy5721 85 TAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLG 164 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (290)
-+.++.-.+.+++.++..-+..|..++.+|+-|+- .|+. .+ +
T Consensus 171 lDPAinl~F~rlK~ele~tk~Klee~QnelsAwkF------------------TPdS--------------~t------G 212 (330)
T KOG2991|consen 171 LDPAINLFFLRLKGELEQTKDKLEEAQNELSAWKF------------------TPDS--------------KT------G 212 (330)
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHHHHhhhheeee------------------cCCC--------------cc------h
Confidence 12244455667777777777777777777765541 0100 00 0
Q ss_pred cccHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 165 SLSNEERQKLEEERERLYQ-----QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 165 ~~~~~e~~~l~e~~~~L~~-----~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
.+.-..=+-+.++.+.|=. .+.+.+-++.-+...-++++..-.+.-.-+..+.++++.+++-+--||.++...+.
T Consensus 213 K~LMAKCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~ 292 (330)
T KOG2991|consen 213 KMLMAKCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRK 292 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Confidence 1101111222223333322 34556666766777777777777777777778888888888888888888888888
Q ss_pred HHHHHHHHHhHHHhhh
Q psy5721 240 EVKEVLQALEEPTRTL 255 (290)
Q Consensus 240 e~kel~q~LeE~~~~l 255 (290)
++..|...++.....+
T Consensus 293 ~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 293 EIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8888888777665443
No 175
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=84.23 E-value=22 Score=35.46 Aligned_cols=83 Identities=17% Similarity=0.243 Sum_probs=45.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA-RRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~-~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
..+-.+.+--+...++.+++....+...+..+.++|++........+... ..+...++.+...|+.+...+...+..|+
T Consensus 57 P~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 57 PADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666777777777777777777777776665555555432 23333444444444444444444444444
Q ss_pred HHHh
Q psy5721 246 QALE 249 (290)
Q Consensus 246 q~Le 249 (290)
..|+
T Consensus 137 ~~l~ 140 (472)
T TIGR03752 137 RRLA 140 (472)
T ss_pred HHHh
Confidence 4443
No 176
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.75 E-value=26 Score=35.36 Aligned_cols=21 Identities=14% Similarity=0.397 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5721 191 EINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee 211 (290)
.+....+.+...++.+..++.
T Consensus 98 ~Lekre~~Le~ke~~L~~re~ 118 (514)
T TIGR03319 98 SLDKKEENLEKKEKELSNKEK 118 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 177
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=83.65 E-value=28 Score=33.14 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 182 YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE-------QLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 182 ~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~-------~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
..-+++...+-.++....++|+.++-.....+..+..+.+ .++++...++.+++++.++..+.+.+-.++...
T Consensus 91 ~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrE 170 (401)
T PF06785_consen 91 RESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRE 170 (401)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHH
Confidence 3456666777777777778888887666666555544444 444455555666666666666655555555444
Q ss_pred hhhhh
Q psy5721 255 LLNFF 259 (290)
Q Consensus 255 l~~~~ 259 (290)
|.+..
T Consensus 171 LaE~l 175 (401)
T PF06785_consen 171 LAEAL 175 (401)
T ss_pred HHHHH
Confidence 44443
No 178
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=83.35 E-value=29 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
++=+|-..++.+|.++-..++..+|
T Consensus 222 AfmdEyEklE~EL~~lY~~Y~~kfR 246 (267)
T PF10234_consen 222 AFMDEYEKLEEELQKLYEIYVEKFR 246 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666655
No 179
>PRK02119 hypothetical protein; Provisional
Probab=83.31 E-value=12 Score=27.54 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
|..++..++..+..+-..+-..+.++..|++++..+.++++++
T Consensus 14 LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 14 LEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333344444444444444444444443
No 180
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.20 E-value=31 Score=30.25 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
-...+.|..++..+....+.+|..+..++..++++...
T Consensus 149 Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 149 QQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33455566667777777777777777777777776543
No 181
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.07 E-value=16 Score=26.80 Aligned_cols=36 Identities=31% Similarity=0.314 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241 (290)
Q Consensus 206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ 241 (290)
+.+.+++...+..+....+.....|..+++.++++.
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444433
No 182
>KOG1962|consensus
Probab=82.73 E-value=8.7 Score=34.33 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el 227 (290)
+++.+...++...|+..++.+..+++........++++.+....+.+.+.++...+++++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 445566666777777777777777777777777777776666666666655555555544
No 183
>KOG4360|consensus
Probab=82.70 E-value=57 Score=32.90 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-------EMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-------el~~lq~E~~~~~~e~kel 244 (290)
+....++..+...|..|-++++.+...+.+|-.+|-+.++++....-+.+.+.. .-..+++|...++++..++
T Consensus 208 rdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~ 287 (596)
T KOG4360|consen 208 RDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAEC 287 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 344445555666666666666666666666666666666555444333332222 2345677777788888888
Q ss_pred HHHHhHHHhhhhhhhhccCCC
Q psy5721 245 LQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 245 ~q~LeE~~~~l~~~~~~~~~~ 265 (290)
++.+.|....|-.+---.-|+
T Consensus 288 m~~~~EaeeELk~lrs~~~p~ 308 (596)
T KOG4360|consen 288 MQMLHEAEEELKCLRSCDAPK 308 (596)
T ss_pred HHHHHHHHHHHHhhccCCCcc
Confidence 888888877776664433343
No 184
>PRK04325 hypothetical protein; Provisional
Probab=82.67 E-value=15 Score=27.13 Aligned_cols=25 Identities=12% Similarity=0.234 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..-+...+.+++.+..+++.|...|
T Consensus 29 N~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 29 NATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 185
>PRK01156 chromosome segregation protein; Provisional
Probab=82.66 E-value=73 Score=34.13 Aligned_cols=28 Identities=18% Similarity=0.345 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYA 199 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~ 199 (290)
..+..++..+...+.+.+.++..+...+
T Consensus 472 ~~~~~~i~~l~~~i~~l~~~~~~l~~~~ 499 (895)
T PRK01156 472 NHYNEKKSRLEEKIREIEIEVKDIDEKI 499 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333
No 186
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.61 E-value=17 Score=26.70 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 190 EEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 190 ~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+-|.-+.-+++.|+++..........+....+.++.+...++.|-..-.++++.|.-..+
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLGkme 77 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLGKME 77 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 334444445555555555444445555555555666666666666666666666554443
No 187
>PRK04406 hypothetical protein; Provisional
Probab=82.30 E-value=16 Score=27.02 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
.|+..+..+-+.+-..+.++..|++++..+.++++++
T Consensus 22 fQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 22 FQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333333333333333444444444444444443
No 188
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=82.16 E-value=19 Score=27.96 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+.+..+...+..++..++.+..++..++.++..
T Consensus 70 ~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 70 EELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 189
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.16 E-value=40 Score=30.77 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 88 EWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 88 ~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
.+...+.....++...+.-|..|+..|.....
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556667777788888888888888877654
No 190
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=82.05 E-value=24 Score=32.80 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL 212 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~ 212 (290)
+-|..+...-...|.++|.||..++..+.++++.-.+.|-.
T Consensus 71 RHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECH 111 (305)
T PF15290_consen 71 RHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECH 111 (305)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666778889999999999999998875544433
No 191
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.85 E-value=26 Score=28.40 Aligned_cols=38 Identities=24% Similarity=0.421 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhHHHhhh
Q psy5721 218 RDYEQLQGEMTRLTQENES-------AKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~-------~~~e~kel~q~LeE~~~~l 255 (290)
..+..++.++..++...++ ..+++.+|+..+.+++..+
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444433 3445555555555555433
No 192
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.36 E-value=15 Score=33.77 Aligned_cols=42 Identities=12% Similarity=0.273 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.+..++.++.+|..+++.++.+++.++++.+++-..|+++-.
T Consensus 62 ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 62 QLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555666666677777777778888888888877643
No 193
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.24 E-value=33 Score=29.87 Aligned_cols=92 Identities=24% Similarity=0.335 Sum_probs=51.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE---------- 235 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~---------- 235 (290)
...........+...|...+......|..+...++..+..-.+.+ .-..+-.+...++.++..|+.+++
T Consensus 59 Fps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~-eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i 137 (188)
T PF03962_consen 59 FPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESE-EREELLEELEELKKELKELKKELEKYSENDPEKI 137 (188)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 334455666777777888887777777777777777655433332 222233444455555555555543
Q ss_pred -HHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 236 -SAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 236 -~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
..++++..+..+.+.-+-+|--+
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l 161 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSL 161 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34444444444554444444333
No 194
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=81.22 E-value=46 Score=30.87 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
++.+.+..+..|.+++...+..|...|+
T Consensus 103 Ql~s~Kkqie~Leqelkr~KsELErsQ~ 130 (307)
T PF10481_consen 103 QLNSCKKQIEKLEQELKRCKSELERSQQ 130 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
No 195
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=81.18 E-value=43 Score=30.44 Aligned_cols=83 Identities=27% Similarity=0.354 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
++..|+.+...+.................-..|..++.+....+..+....+....+...|+.++..++.....-...|-
T Consensus 48 ea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L~ 127 (246)
T PF00769_consen 48 EAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEELL 127 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444433433333333333333444456667777888888888888888888888999998888887777777765
Q ss_pred HHH
Q psy5721 250 EPT 252 (290)
Q Consensus 250 E~~ 252 (290)
...
T Consensus 128 ~~~ 130 (246)
T PF00769_consen 128 EVM 130 (246)
T ss_dssp ---
T ss_pred HHH
Confidence 544
No 196
>KOG4005|consensus
Probab=81.07 E-value=15 Score=33.34 Aligned_cols=68 Identities=16% Similarity=0.130 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
..++++..++.+..+....+..+++.|......|..++..+..++..+.++|-+++.+-++--|+-+.
T Consensus 90 aRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~~~~~~~v~ee 157 (292)
T KOG4005|consen 90 ARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQQQHNTRVIEE 157 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHHHHHhhHHHhh
Confidence 34567777888888888888899999999999999999999999999999999998887777766543
No 197
>KOG4809|consensus
Probab=81.05 E-value=32 Score=34.91 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+.++....+..+.|+++...+.....++.+.++..+++.....+++.++..+.--++..+++.-.+..+|....
T Consensus 334 e~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh 407 (654)
T KOG4809|consen 334 ESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAH 407 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333444444444444444444444444444444444444444444333
No 198
>PRK00846 hypothetical protein; Provisional
Probab=81.05 E-value=18 Score=27.07 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.+.+.+++.++..++-|...|.+.
T Consensus 36 v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 36 LADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333444444444333
No 199
>KOG4674|consensus
Probab=80.98 E-value=34 Score=39.54 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN--------------- 234 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~--------------- 234 (290)
+++.+++...+....+..++.++..+...+..+...+.+.+.........-..++-+..++..+.
T Consensus 123 qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~ 202 (1822)
T KOG4674|consen 123 QKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELS 202 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555555555555555555555555555555444444443333222222333333333333
Q ss_pred ------HHHHHH----HHHHHHHHhHHHhhhhhhhh
Q psy5721 235 ------ESAKEE----VKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 235 ------~~~~~e----~kel~q~LeE~~~~l~~~~~ 260 (290)
.++..+ +.+|...|..++..+..++.
T Consensus 203 ~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~ 238 (1822)
T KOG4674|consen 203 KVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQE 238 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 55555556666666655554
No 200
>KOG4643|consensus
Probab=80.98 E-value=87 Score=34.22 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIM 207 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~ 207 (290)
++..+..-|...+.+++.+.....+++.+++
T Consensus 489 ~iknlnk~L~~r~~elsrl~a~~~elkeQ~k 519 (1195)
T KOG4643|consen 489 QIKNLNKSLNNRDLELSRLHALKNELKEQYK 519 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543
No 201
>PRK02793 phi X174 lysis protein; Provisional
Probab=80.80 E-value=20 Score=26.36 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.++.|..-+.+.+.+++.+..+++.|.+.|.+
T Consensus 23 tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 23 TIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444
No 202
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=80.77 E-value=7 Score=26.11 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.+..+....+.+..+...|..|++.++.++..|...
T Consensus 6 Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 6 DYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444444444433
No 203
>KOG2129|consensus
Probab=80.75 E-value=48 Score=32.58 Aligned_cols=61 Identities=21% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME-QEELITTARRDYEQLQGEMTRLTQ 232 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~-qee~~~~~~~e~~~l~~el~~lq~ 232 (290)
.++..++.+++..-.-+..-+++++.+...|...+++ ++.....+-+.+++|+.+..-||.
T Consensus 161 nKlm~ki~Klen~t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~ 222 (552)
T KOG2129|consen 161 NKLMNKIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQK 222 (552)
T ss_pred HHHHHHHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555544333334444444444444444432 222223333444444444444443
No 204
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=80.70 E-value=22 Score=30.65 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
+.+.||.--.+.++++.+|+.+|++...+|.+
T Consensus 146 EaeQLQsLR~avRqElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 146 EAEQLQSLRSAVRQELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45567777788999999999999999888754
No 205
>KOG0979|consensus
Probab=80.70 E-value=92 Score=33.97 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
.+.++..+..++++++..-...+..++.....|+..|+-
T Consensus 316 ~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q~e 354 (1072)
T KOG0979|consen 316 IEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQAE 354 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444555555555555555555555566666666543
No 206
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.59 E-value=52 Score=34.72 Aligned_cols=24 Identities=13% Similarity=0.224 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
..++|++.+..++..++..|...-
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk 659 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLK 659 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666555555543
No 207
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=80.58 E-value=5 Score=31.88 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l 223 (290)
+..++...+..|+.+.+.+..+|+.+...-+....++-+++.|
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~L 48 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKL 48 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHH
Confidence 4555666666666666666666655554444444433333333
No 208
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.42 E-value=22 Score=37.39 Aligned_cols=82 Identities=28% Similarity=0.324 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDE------------EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~------------ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
+...|.++..-|.++|.+++. |+..+....--|..++++. .+..+-++.+...|-..++..
T Consensus 395 ENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es-------~k~~e~lq~kneellk~~e~q 467 (861)
T PF15254_consen 395 ENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQES-------LKSQELLQSKNEELLKVIENQ 467 (861)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHH-------HHhHHHHHHhHHHHHHHHHHH
Confidence 334455555556666655443 3333333333333333333 333334444444555555666
Q ss_pred HHHHHHHHHHHhHHHhhhhhh
Q psy5721 238 KEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 238 ~~e~kel~q~LeE~~~~l~~~ 258 (290)
++|++.+...+.|+...|.+.
T Consensus 468 ~~Enk~~~~~~~ekd~~l~~~ 488 (861)
T PF15254_consen 468 KEENKRLRKMFQEKDQELLEN 488 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 666666666666666555544
No 209
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=80.40 E-value=21 Score=26.44 Aligned_cols=29 Identities=28% Similarity=0.305 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELIT 214 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~ 214 (290)
.+-++.|..++.+.=.|+-.+-..++.+.
T Consensus 3 rEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 3 REQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455566666666556655555555554
No 210
>KOG1853|consensus
Probab=80.31 E-value=48 Score=30.48 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+++.+...+...+.+.+.+.+.+.-+.+..|++...+ ....-+....|+.++....+.-+.+...+++|+|+-+.+.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q---~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLE 125 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQ---RVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLE 125 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3444445555555555555555555555555544333 2333445556666666666777777777777777655554
No 211
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.22 E-value=78 Score=32.83 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
++-..-+++|...|.++...+.++.
T Consensus 191 q~Eq~~~keL~~kl~~l~~~l~~~~ 215 (617)
T PF15070_consen 191 QSEQHVKKELQKKLGELQEKLHNLK 215 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344456566665555555554
No 212
>KOG0993|consensus
Probab=79.91 E-value=56 Score=32.09 Aligned_cols=92 Identities=22% Similarity=0.322 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEK------LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~k------lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
.|+.+...+.+.-..++.++..+.+.+.+ |..++..-.+.-..++.-.--++.++..+...+..+++.++++..
T Consensus 104 ~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k 183 (542)
T KOG0993|consen 104 NLEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSK 183 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 34445555555555555555555544433 333443333333344444455666677777777777777777775
Q ss_pred HHhHHH------hhhhhhhhccCC
Q psy5721 247 ALEEPT------RTLLNFFRQSSP 264 (290)
Q Consensus 247 ~LeE~~------~~l~~~~~~~~~ 264 (290)
+...++ ..++++-|..||
T Consensus 184 ~~~h~a~slh~~t~lL~L~RD~s~ 207 (542)
T KOG0993|consen 184 AKHHKAESLHVFTDLLNLARDKSE 207 (542)
T ss_pred hhcccchHHHHHHHHHHHhcCCch
Confidence 554443 345566677654
No 213
>KOG0995|consensus
Probab=79.87 E-value=75 Score=32.43 Aligned_cols=83 Identities=22% Similarity=0.262 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQS---QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~---~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
.+...-+++++.++.+.++....|..+. ..++++..+..+.++.+.....+.+.+..+.-.+..+.+..-+++....
T Consensus 301 ~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~ 380 (581)
T KOG0995|consen 301 SEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKF 380 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3344444556666666666665555443 3344444444444444444444444444444333333333333333333
Q ss_pred HHHhHH
Q psy5721 246 QALEEP 251 (290)
Q Consensus 246 q~LeE~ 251 (290)
..+..+
T Consensus 381 ~~~~~l 386 (581)
T KOG0995|consen 381 IDLNSL 386 (581)
T ss_pred HHHHHH
Confidence 333333
No 214
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=79.84 E-value=23 Score=26.56 Aligned_cols=71 Identities=27% Similarity=0.334 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN----ESAKEEVKEVLQALEEP 251 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~----~~~~~e~kel~q~LeE~ 251 (290)
|...|+....|+..+.+....++.+-.+.+.++.+.-.+++.+...+..|...- +.+++++..|..+|+..
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667777788888888888887777888888877788888777777776665 56777888888887764
No 215
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.81 E-value=46 Score=30.02 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
|.+..++++.+.++-...-++|......+..++..+...+.+..+.+.....+.++...|..+.+++...
T Consensus 34 L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 34 LEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455555555555666666666666666666666666666666666666555
No 216
>KOG4657|consensus
Probab=79.80 E-value=46 Score=29.99 Aligned_cols=69 Identities=22% Similarity=0.321 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
+.+.+.+.+.+-+.++......+.+-.......+..+..++.+.+.+..-+..+..|.+.+++=+++-.
T Consensus 59 e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr 127 (246)
T KOG4657|consen 59 ELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKR 127 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444445555555544444444444434444444444444444444444444444444444444333
No 217
>KOG0994|consensus
Probab=79.80 E-value=17 Score=39.97 Aligned_cols=86 Identities=20% Similarity=0.263 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDE---KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~e---kd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
....+++++...+..|.. -...|.++....+.|++++....+.+...+..+......+..-..+++++..+...|..
T Consensus 1202 ~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~ 1281 (1758)
T KOG0994|consen 1202 RFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLT 1281 (1758)
T ss_pred HHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHH
Confidence 345666666666666632 23456666677777777777777776666666665555444444444444444444444
Q ss_pred HHhHHHhhh
Q psy5721 247 ALEEPTRTL 255 (290)
Q Consensus 247 ~LeE~~~~l 255 (290)
...|++.++
T Consensus 1282 ~~keL~e~~ 1290 (1758)
T KOG0994|consen 1282 TYKELREQL 1290 (1758)
T ss_pred HHHHHHHHH
Confidence 444444443
No 218
>PRK04863 mukB cell division protein MukB; Provisional
Probab=79.78 E-value=1.2e+02 Score=34.81 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=4.5
Q ss_pred hhhhhchhhc
Q psy5721 30 KLTRILQESL 39 (290)
Q Consensus 30 kLT~lL~~~l 39 (290)
++-++|+..+
T Consensus 196 kF~kLf~tai 205 (1486)
T PRK04863 196 KFYRLIEASL 205 (1486)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 219
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=79.37 E-value=26 Score=26.76 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
.++.++..+..+++.++...+.+...+.+....|-.
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555555555555555555544443
No 220
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=79.33 E-value=24 Score=26.46 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
++..+..|.+.-..+.=|+-++.+.+++...+..+++.....-..|..+++.++++...-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerL 69 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555555554444433
No 221
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=79.21 E-value=42 Score=29.21 Aligned_cols=64 Identities=23% Similarity=0.268 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE-QLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~-~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.+.+.+|..+......|..++.+.+..+..+++... ..+.+....+.|.+.++..++.|.+.|+
T Consensus 123 ~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l~ 187 (189)
T PF10211_consen 123 QELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQLE 187 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555555555543333 2344445556666666666666665554
No 222
>KOG4674|consensus
Probab=79.10 E-value=87 Score=36.40 Aligned_cols=37 Identities=22% Similarity=0.345 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
+...+.+....|+..+...+..+......+......+
T Consensus 704 e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~ 740 (1822)
T KOG4674|consen 704 EVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKL 740 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3344445555555555555444444444443333333
No 223
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=78.81 E-value=50 Score=31.19 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHhHHHhhhhhhhhccC
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENE-----------------------SAKEEVKEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~-----------------------~~~~e~kel~q~LeE~~~~l~~~~~~~~ 263 (290)
+|+..+..+.+.+..+..+...||..++ ....+++.|.++...+..+|...+++.+
T Consensus 175 EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~ 253 (310)
T PF09755_consen 175 EQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHS 253 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455666777777777777777652 2344566666666666666666665554
No 224
>KOG3990|consensus
Probab=78.55 E-value=14 Score=33.72 Aligned_cols=36 Identities=36% Similarity=0.435 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ 205 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q 205 (290)
....+++++..|...|.++|..|-.....|..|+..
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad 261 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD 261 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc
Confidence 457889999999999999999997776666666654
No 225
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=78.38 E-value=31 Score=27.16 Aligned_cols=79 Identities=19% Similarity=0.350 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ---------------IMEQEELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q---------------l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
.+..++..+..++...+.+++.....+..+..- ..+..+....+...++.++..+..+....+.+
T Consensus 14 ~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l 93 (110)
T TIGR02338 14 QLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERL 93 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555554444433333321 12444445566666666666666666666666
Q ss_pred HHHHHHHHHHHhHH
Q psy5721 238 KEEVKEVLQALEEP 251 (290)
Q Consensus 238 ~~e~kel~q~LeE~ 251 (290)
+..+++++..|.++
T Consensus 94 ~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 94 REQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 226
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=78.15 E-value=45 Score=28.95 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT-------TARRDYEQL----QGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~-------~~~~e~~~l----~~el~~lq~E~~~~~~e~kel 244 (290)
.-.+-|+.+|+........+...+.++..+.......+. .-+.....+ ...+-.|..++.+++-...+|
T Consensus 81 qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~el 160 (182)
T PF15035_consen 81 QVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAEL 160 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 345556667766666666666666655554433222221 111111111 224567777777777777777
Q ss_pred HHHHh
Q psy5721 245 LQALE 249 (290)
Q Consensus 245 ~q~Le 249 (290)
..+.+
T Consensus 161 r~~Te 165 (182)
T PF15035_consen 161 RTATE 165 (182)
T ss_pred HHHHH
Confidence 76544
No 227
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=78.13 E-value=42 Score=34.75 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhHHHhhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~ 256 (290)
.++.+++.+..++.+....+.
T Consensus 266 ~Le~ei~~le~e~~e~~~~l~ 286 (650)
T TIGR03185 266 QLERQLKEIEAARKANRAQLR 286 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444433333
No 228
>KOG0964|consensus
Probab=77.97 E-value=35 Score=36.98 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
..+...|+..|++...+|+...+.+.++...++..+..+.....+...+..++.....+-....+.+.--...|++....
T Consensus 677 ~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~ 756 (1200)
T KOG0964|consen 677 RSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEIKTS 756 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555556655555555565555555555555555555555555555555444444444444455555555
Q ss_pred hhhhhhccCC
Q psy5721 255 LLNFFRQSSP 264 (290)
Q Consensus 255 l~~~~~~~~~ 264 (290)
+..+.-+++.
T Consensus 757 l~~~~~~~~~ 766 (1200)
T KOG0964|consen 757 LHKLESQSNY 766 (1200)
T ss_pred HHHHHHHHHh
Confidence 5555544443
No 229
>PRK00295 hypothetical protein; Provisional
Probab=77.68 E-value=24 Score=25.56 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
++.|..-+.+.+.+++.++.+++.|.+.+.+
T Consensus 21 ie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 21 IQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444443
No 230
>PRK04325 hypothetical protein; Provisional
Probab=77.55 E-value=25 Score=25.92 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
|..++..|+..+..+-+.+-..+.++.+|+.++..+.++++++
T Consensus 14 LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 14 LEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333333444444444444444444443
No 231
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=77.47 E-value=13 Score=24.74 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
++++.+.|...-..|..+++++..++..|..++..+...+
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566666666777777777777777777777766665443
No 232
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=77.42 E-value=63 Score=33.57 Aligned_cols=93 Identities=19% Similarity=0.276 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..+.+++.++++|+..+...+++|......+..-...+...-..+.......--|+.--.++..+...+.+.. +.|
T Consensus 79 ~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~----~rl 154 (632)
T PF14817_consen 79 RRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYT----KRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 3566777777777777777777776666655554444444444444443333333333333444444444444 444
Q ss_pred hHHHhhhhhhhhccCCC
Q psy5721 249 EEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 249 eE~~~~l~~~~~~~~~~ 265 (290)
..--..+-+.+|.+...
T Consensus 155 ~~~~~~~q~~~R~a~~~ 171 (632)
T PF14817_consen 155 QGQVEQLQDIQRKAKVE 171 (632)
T ss_pred HHHHHHHHHHHhhccCc
Confidence 44445556667755444
No 233
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.38 E-value=33 Score=31.82 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 215 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 215 ~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
..+..+.-++.++......++.+.++++.+..+|+.-........-
T Consensus 92 ~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~ 137 (307)
T PF10481_consen 92 VKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDV 137 (307)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Confidence 3344555677788899999999999999999999987766664443
No 234
>PRK00736 hypothetical protein; Provisional
Probab=77.35 E-value=25 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.232 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+.|...+.+.+.+++.+..+++.|...+.+
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444433
No 235
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=77.15 E-value=50 Score=28.95 Aligned_cols=86 Identities=21% Similarity=0.307 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITT-ARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~-~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
..+.+.+.+............+..+......+.+++.++...+..... .-.+-+.+..++..+...++....+++.|..
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek 146 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK 146 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666777777777777777777766655431 1234567788888888888888888888887
Q ss_pred HHhHHHh
Q psy5721 247 ALEEPTR 253 (290)
Q Consensus 247 ~LeE~~~ 253 (290)
.++-...
T Consensus 147 ~leL~~k 153 (194)
T PF15619_consen 147 QLELENK 153 (194)
T ss_pred HHHHHhh
Confidence 7665443
No 236
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=77.01 E-value=55 Score=32.68 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY-EQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~-~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
..-+..|-.++.+.+.++..+....+.++++.+..+.........+ ..++.+-.+++.+.+.++++...++..|.++..
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777778888888888888888877776665544443332 334444455666666666666666666666666
Q ss_pred hhhhh
Q psy5721 254 TLLNF 258 (290)
Q Consensus 254 ~l~~~ 258 (290)
+|..+
T Consensus 138 ~l~~~ 142 (472)
T TIGR03752 138 RLAGV 142 (472)
T ss_pred HHhhc
Confidence 66443
No 237
>PRK00295 hypothetical protein; Provisional
Probab=76.58 E-value=26 Score=25.38 Aligned_cols=18 Identities=17% Similarity=0.184 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5721 226 EMTRLTQENESAKEEVKE 243 (290)
Q Consensus 226 el~~lq~E~~~~~~e~ke 243 (290)
++..|+.++..+.+++++
T Consensus 34 ~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 34 VIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 238
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.29 E-value=52 Score=33.06 Aligned_cols=90 Identities=19% Similarity=0.268 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYA---EKLKEQIM-EQ-------EELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~---~klk~ql~-~q-------ee~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
.....+++++..++..+...+.++......+ +.+..... .. .........-..-+.+++..+..+...+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREA 150 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666555555444333 22221110 00 0112333344444444555555555555
Q ss_pred HHHHHHHHHHHhHHHhhhhhh
Q psy5721 238 KEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 238 ~~e~kel~q~LeE~~~~l~~~ 258 (290)
..++++++.++.++...|..+
T Consensus 151 ~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 151 ERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 555555555555555554444
No 239
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=76.29 E-value=23 Score=36.13 Aligned_cols=68 Identities=15% Similarity=0.274 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCCc
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQ 280 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (290)
.+.+....+.+...+..+..+...+.+.+..|...-.+....|..+....+--+..|..+-|-|-|..
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~ 441 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLEKSNLPGLPED 441 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 35566666677777777777777777777777777777778888888777777777888888888753
No 240
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=76.05 E-value=43 Score=27.57 Aligned_cols=34 Identities=26% Similarity=0.528 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 86 AEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
+.+|+.+|+-+.+.+..|..+|..|+..+...++
T Consensus 3 ~nEWktRYEtQ~E~N~QLekqi~~l~~kiek~r~ 36 (129)
T PF15372_consen 3 GNEWKTRYETQLELNDQLEKQIIILREKIEKIRG 36 (129)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4689999999999999999999999999887664
No 241
>PLN02678 seryl-tRNA synthetase
Probab=75.96 E-value=28 Score=34.59 Aligned_cols=84 Identities=27% Similarity=0.345 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+.++...+..+++....+.|+.++.+..++.. ..+.+.+.++...+..++..++.+++++++++.++.
T Consensus 37 ~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~-----------~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 37 ALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIA-----------KEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555555432211 123344556677788888888888899999999988
Q ss_pred hhhhhhhhccCCCCc
Q psy5721 253 RTLLNFFRQSSPKGT 267 (290)
Q Consensus 253 ~~l~~~~~~~~~~~~ 267 (290)
..|=++.--+-|-|+
T Consensus 106 ~~iPNi~~~~VP~G~ 120 (448)
T PLN02678 106 KTIGNLVHDSVPVSN 120 (448)
T ss_pred HhCCCCCCccCCCCC
Confidence 888888877777664
No 242
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.74 E-value=54 Score=34.85 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENES 236 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~ 236 (290)
.+++.-|..+.........++......+..+++++..|..++.-++.|++.
T Consensus 116 ~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kelei 166 (769)
T PF05911_consen 116 QEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEI 166 (769)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333444445555555666666666666666666666543
No 243
>KOG1029|consensus
Probab=75.64 E-value=22 Score=37.52 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
...+.+++.+.........|.+.+.++++++++.|..++
T Consensus 468 tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~ 506 (1118)
T KOG1029|consen 468 TTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLA 506 (1118)
T ss_pred chHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555555555566666666666666666655443
No 244
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=75.54 E-value=62 Score=32.40 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.+.+|+.+.+..+++++.|+...+++..++
T Consensus 331 ~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 331 KLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 455555555666666666666555555544
No 245
>PRK00846 hypothetical protein; Provisional
Probab=75.43 E-value=32 Score=25.76 Aligned_cols=47 Identities=15% Similarity=0.083 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 199 AEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 199 ~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
+..|..++..++..+..+-+.+-..+..+.+++.++..+.++++++.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444455555555555555555544
No 246
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=75.42 E-value=43 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.++..+..+....+.+.+.+..+.+.+++....+
T Consensus 98 ~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 98 ILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444433333
No 247
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=75.33 E-value=4.8 Score=32.32 Aligned_cols=89 Identities=22% Similarity=0.346 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+++-+++....|.+..+....+...+..--+.|.+...++..+..++..++..-.++..+++....+..+|...|+.+.
T Consensus 19 ~Leeiin~W~~eLe~q~k~F~~qA~~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 19 TLEEIINKWNKELEEQEKEFNEQATQVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp ------------------------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555566666666677777777777777777777778888888888888888888887777
Q ss_pred hhhhhhhhc
Q psy5721 253 RTLLNFFRQ 261 (290)
Q Consensus 253 ~~l~~~~~~ 261 (290)
..+..+...
T Consensus 99 ~~~~~l~~~ 107 (116)
T PF05064_consen 99 KQVEKLLSN 107 (116)
T ss_dssp CTT------
T ss_pred HHHHHHHHH
Confidence 776666543
No 248
>KOG0978|consensus
Probab=74.71 E-value=70 Score=33.55 Aligned_cols=20 Identities=35% Similarity=0.737 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEE 191 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~e 191 (290)
+.+++.+.+|.+++.++|+.
T Consensus 464 ed~Qeqn~kL~~el~ekdd~ 483 (698)
T KOG0978|consen 464 EDMQEQNQKLLQELREKDDK 483 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34667778888888777763
No 249
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=74.40 E-value=45 Score=27.10 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=7.3
Q ss_pred HHHHHHhHHHhhhhhhh
Q psy5721 243 EVLQALEEPTRTLLNFF 259 (290)
Q Consensus 243 el~q~LeE~~~~l~~~~ 259 (290)
.|..++.+....+.++.
T Consensus 102 ~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 250
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.17 E-value=46 Score=27.24 Aligned_cols=57 Identities=19% Similarity=0.352 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~ 228 (290)
+.+..++..+-..+++..+-.......+..++..+......+.........|+.++.
T Consensus 64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444433
No 251
>KOG4809|consensus
Probab=74.04 E-value=1.1e+02 Score=31.27 Aligned_cols=88 Identities=22% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 176 EERERLYQQL----DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 176 e~~~~L~~~L----~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..|+.|..+= .++-++|.+.+.....|++.+......+.........|++.+..|...-.....+++.+.=+|+.+
T Consensus 313 r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqk 392 (654)
T KOG4809|consen 313 RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQK 392 (654)
T ss_pred HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHH
Confidence 5555555432 233456777777777777766666666666666666777777777777777888888888899999
Q ss_pred HhhhhhhhhccC
Q psy5721 252 TRTLLNFFRQSS 263 (290)
Q Consensus 252 ~~~l~~~~~~~~ 263 (290)
+..+..|.+|.-
T Consensus 393 kEec~kme~qLk 404 (654)
T KOG4809|consen 393 KEECSKMEAQLK 404 (654)
T ss_pred HHHHHHHHHHHH
Confidence 988888887753
No 252
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.95 E-value=32 Score=25.19 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
+..|+..+..+-+.+-..+.++..+++++..+.++++++
T Consensus 17 lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 17 LAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333334444444444444444443
No 253
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=73.87 E-value=50 Score=28.79 Aligned_cols=18 Identities=17% Similarity=0.078 Sum_probs=9.0
Q ss_pred cceEEEeeCCCCCChHhh
Q psy5721 44 RTTIIICCSPASFNESET 61 (290)
Q Consensus 44 ~t~mi~~vsp~~~~~~Et 61 (290)
....+-+||+.+..-.+.
T Consensus 18 ~~~~~q~vS~~p~tR~dV 35 (189)
T PF10211_consen 18 GQLWIQFVSSAPATRQDV 35 (189)
T ss_pred CeeeEeeeCCCCCCHHHH
Confidence 344555666655443333
No 254
>KOG0980|consensus
Probab=73.65 E-value=92 Score=33.49 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 210 EELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 210 ee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
+++++.+..+...+-.+....+.++++..+-+-++..+..+++-+|.+++|+.+.
T Consensus 430 kek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 430 KEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444445555555555555556666666666666666665543
No 255
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=73.48 E-value=75 Score=30.63 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=8.7
Q ss_pred HHHHHHHHcCCCCCCCCCCChhh
Q psy5721 10 RNVISALADGNKTHIPYRDSKLT 32 (290)
Q Consensus 10 ~~vi~aL~~~~~~~vPyRdSkLT 32 (290)
.+++.+|+.-. ..+-|-.|||+
T Consensus 74 ~~Il~~lr~~g-~~~df~p~kLk 95 (359)
T PF10498_consen 74 SNILDELRKLG-VPVDFPPSKLK 95 (359)
T ss_pred HHHHHHHHccC-CCCCCChHHhh
Confidence 33444444422 23334444443
No 256
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.30 E-value=16 Score=36.32 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.+.+.+..+...++..++.++.+++.|+.+++....+....
T Consensus 90 qElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~~~ 130 (475)
T PRK13729 90 RELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTA 130 (475)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Confidence 33333333444444555555555555555554444443333
No 257
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=72.89 E-value=78 Score=30.05 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT---TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~---~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.++.++..++.++.+.+..+.+.+..+...+.++..++.... ....+.+..+.++...+.+++.++..+...+..++
T Consensus 96 ~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 175 (370)
T PRK11578 96 QAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDTAATELAVKQAQIGTIDAQIKRNQASLD 175 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444444443333321 12334444444444455555566666666666666
Q ss_pred HHHhhhhhhhhccCCCCc-chhhhhhcc
Q psy5721 250 EPTRTLLNFFRQSSPKGT-LLYNHYLLG 276 (290)
Q Consensus 250 E~~~~l~~~~~~~~~~~~-~~~~~~~~~ 276 (290)
.....+... +.-+|-.| +...|...|
T Consensus 176 ~~~~~l~~~-~I~AP~dG~V~~~~~~~G 202 (370)
T PRK11578 176 TAKTNLDYT-RIVAPMAGEVTQITTLQG 202 (370)
T ss_pred HHHHHHhcC-EEECCCCcEEEeeecCCC
Confidence 655554432 34445444 444555545
No 258
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.80 E-value=20 Score=35.82 Aligned_cols=38 Identities=13% Similarity=0.323 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+++++.++.++..+.++.+..++++++++.++..+..+
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333344444433333333
No 259
>KOG2196|consensus
Probab=72.71 E-value=76 Score=28.93 Aligned_cols=89 Identities=20% Similarity=0.191 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..-..|++-+++-.-+|.+-+....++...+..--+.|.+-.+++..+-.+..+.+..-.+|-.+++-.....++|++-|
T Consensus 71 l~~~~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L 150 (254)
T KOG2196|consen 71 LTYKTLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLL 150 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777788887887777777787788888888888888888888888888888888888777777777777
Q ss_pred hHHHhhhhh
Q psy5721 249 EEPTRTLLN 257 (290)
Q Consensus 249 eE~~~~l~~ 257 (290)
..+...+..
T Consensus 151 ~~lE~k~~~ 159 (254)
T KOG2196|consen 151 DPLETKLEL 159 (254)
T ss_pred HHHHHHHhc
Confidence 766655543
No 260
>KOG0999|consensus
Probab=72.64 E-value=1.2e+02 Score=31.11 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5721 86 AEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGE 121 (290)
Q Consensus 86 ~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~ 121 (290)
...+..+|+.+..+....+.++..++.-+..++..+
T Consensus 45 K~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~h 80 (772)
T KOG0999|consen 45 KEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQH 80 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888888888888888887776543
No 261
>PF14992 TMCO5: TMCO5 family
Probab=72.48 E-value=20 Score=33.36 Aligned_cols=87 Identities=24% Similarity=0.370 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL---ITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~---~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
..-+.+-+....|-+.+++++..|..+..++.++.....+.++. ....+.....++.+-.+|..+++..-.-+.+++
T Consensus 11 ~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l~~~~~elq 90 (280)
T PF14992_consen 11 KDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHLSKSVQELQ 90 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhhhhhhhhhh
Confidence 33456778888999999999999999999888877655544443 233345566677777788888888877778888
Q ss_pred HHHhHHHhhh
Q psy5721 246 QALEEPTRTL 255 (290)
Q Consensus 246 q~LeE~~~~l 255 (290)
.++.+....+
T Consensus 91 ~k~~e~~~~~ 100 (280)
T PF14992_consen 91 RKQDEQETNV 100 (280)
T ss_pred hhhccccCCC
Confidence 8877776664
No 262
>KOG1029|consensus
Probab=72.13 E-value=45 Score=35.34 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 198 YAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 198 ~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
+++.|..++.+...++...+-.+.....++..+....+..-.++..|++.+.|..+.|+
T Consensus 445 eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333344444444444444444444443
No 263
>PRK00736 hypothetical protein; Provisional
Probab=72.13 E-value=35 Score=24.73 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5721 227 MTRLTQENESAKEEVK 242 (290)
Q Consensus 227 l~~lq~E~~~~~~e~k 242 (290)
+..|+.++..+.++++
T Consensus 35 i~~L~~ql~~L~~rl~ 50 (68)
T PRK00736 35 VEQMRKKLDALTERFL 50 (68)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 264
>KOG4603|consensus
Probab=72.03 E-value=48 Score=28.68 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=40.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ--IMEQEELITTARRDYEQLQGEMTRLTQ 232 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q--l~~qee~~~~~~~e~~~l~~el~~lq~ 232 (290)
.+.++...+..++..|..+++.+.+.+.....++..|..- +.+..+.+.++.++...+.+.+..+..
T Consensus 76 ~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 76 VSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred CChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666777777777777766666666666666555543 345555556666666666665555544
No 265
>KOG4643|consensus
Probab=71.71 E-value=1.6e+02 Score=32.28 Aligned_cols=17 Identities=12% Similarity=0.251 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 100 SSRYKGKLEKLELELSR 116 (290)
Q Consensus 100 ~~~l~~~i~~L~~el~~ 116 (290)
++.|.+.|..+...+..
T Consensus 417 ~e~Leeri~ql~qq~~e 433 (1195)
T KOG4643|consen 417 HEILEERINQLLQQLAE 433 (1195)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 266
>KOG2391|consensus
Probab=71.71 E-value=29 Score=33.16 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 190 EEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 190 ~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
++++.+..+.+.+++.-++...-...++...+.|+.++..++...+.++..+++
T Consensus 225 eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 225 EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444444555555444444445555555666666666666666666666666
No 267
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=71.55 E-value=89 Score=31.34 Aligned_cols=34 Identities=26% Similarity=0.420 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ 209 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~q 209 (290)
-.+.+|...+..++++|..+......|+.++..|
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 4566777778888888888877777777776433
No 268
>KOG4460|consensus
Probab=71.26 E-value=1.3e+02 Score=30.88 Aligned_cols=25 Identities=16% Similarity=0.118 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
|++-+..+++.|...+|..++....
T Consensus 663 Elq~~~~~~~~L~~~iET~~~~~~K 687 (741)
T KOG4460|consen 663 ELQLIPDQLRHLGNAIETVTMKKDK 687 (741)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4444555666666666666655433
No 269
>KOG0946|consensus
Probab=71.00 E-value=21 Score=37.77 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA 216 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~ 216 (290)
.+++..-..+++..+.+.|.+++++.++...|..+.++.++++...
T Consensus 652 ~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 652 HEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666666677777777666665555555555544333
No 270
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=70.53 E-value=1.1e+02 Score=32.65 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q psy5721 231 TQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 231 q~E~~~~~~e~kel~q~LeE 250 (290)
+.|+..+...+..|+.+|+.
T Consensus 672 e~E~~~l~~Ki~~Le~Ele~ 691 (769)
T PF05911_consen 672 EAEAEELQSKISSLEEELEK 691 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 271
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=70.52 E-value=61 Score=26.88 Aligned_cols=74 Identities=9% Similarity=0.118 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..++..++.....+..+...+..+..+|................|..........+...+..+++|..+.+++.
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR 95 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLR 95 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 44555555555555555555555555555444444444444445555556666666777777777777777766
No 272
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=70.48 E-value=34 Score=24.03 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 206 IMEQEELITTARRDYEQLQGEMTRLTQENES 236 (290)
Q Consensus 206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~ 236 (290)
+.+.+..+..+..++..|..++..|..++..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 273
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=70.45 E-value=48 Score=25.67 Aligned_cols=33 Identities=30% Similarity=0.397 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
+...+..+...++++++.++.++.+....+..+
T Consensus 68 ~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 68 DAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666655443
No 274
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=70.43 E-value=31 Score=34.00 Aligned_cols=79 Identities=29% Similarity=0.402 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+.++...|..++.+...++..+.+.+..++..-. ....-.........+......+..++..++++..+++.+++..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555566666666666666555555544443111 0001112223333444444444555555555555555444443
No 275
>KOG0612|consensus
Probab=70.27 E-value=1e+02 Score=34.29 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHHcCC---CCCCCCCCChhhhhchhhcCC
Q psy5721 6 CGALRNVISALADGN---KTHIPYRDSKLTRILQESLGG 41 (290)
Q Consensus 6 L~~L~~vi~aL~~~~---~~~vPyRdSkLT~lL~~~l~g 41 (290)
|.-+|.|+.-.++|. ..-|---|---.-+|+.-=+|
T Consensus 216 LADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~ 254 (1317)
T KOG0612|consen 216 LADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDG 254 (1317)
T ss_pred eccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCC
Confidence 445678887777754 133444455556666655444
No 276
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=70.13 E-value=49 Score=25.68 Aligned_cols=38 Identities=8% Similarity=0.165 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.++..+..+..+...+...++.+..++.++...|.+++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~~ 104 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQAQ 104 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444555555555555555555554443
No 277
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=69.96 E-value=1.2e+02 Score=34.01 Aligned_cols=14 Identities=21% Similarity=0.442 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy5721 101 SRYKGKLEKLELEL 114 (290)
Q Consensus 101 ~~l~~~i~~L~~el 114 (290)
..++.++..++..+
T Consensus 514 ~~~~~~~~~~~~~~ 527 (1201)
T PF12128_consen 514 RQARRELEELRAQI 527 (1201)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 278
>KOG0249|consensus
Probab=69.88 E-value=96 Score=32.68 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhh
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHY 273 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~ 273 (290)
...+.++.+.|.+++..+...++++..+.+.|....+.+...+..+-+++-.+..-|+.|.
T Consensus 211 rmaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~mrd~~ 271 (916)
T KOG0249|consen 211 RMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQELRDHL 271 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhcchh
Confidence 3444455556666666666666666666666666666666666666665556666666553
No 279
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=69.82 E-value=50 Score=25.64 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
...+....+....+.++.++.++..+.+....++.+++..|.++
T Consensus 60 ~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 60 EKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777777777777777777777777777765
No 280
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=69.67 E-value=96 Score=31.13 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKL-----------KEQIMEQEELITTARRDYEQLQGEMTRLTQENES 236 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~kl-----------k~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~ 236 (290)
..+.+.++.+++.+...++-.+..+.-+....... ...+.+..+.......+...+..++..+..+...
T Consensus 77 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (525)
T TIGR02231 77 RKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRE 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666665555555554443333211 1123344444444445555555666666666666
Q ss_pred HHHHHHHHHHHHhHHH
Q psy5721 237 AKEEVKEVLQALEEPT 252 (290)
Q Consensus 237 ~~~e~kel~q~LeE~~ 252 (290)
+++++..++++|..+.
T Consensus 157 ~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 157 LEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 6666666666666554
No 281
>KOG2264|consensus
Probab=69.47 E-value=33 Score=35.07 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHhHH
Q psy5721 236 SAKEEVKEVLQALEEP 251 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~ 251 (290)
+++-++..-+.+++|+
T Consensus 132 ~Lk~~ieqaq~~~~El 147 (907)
T KOG2264|consen 132 ALKGEIEQAQRQLEEL 147 (907)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3333333333334443
No 282
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=69.45 E-value=79 Score=27.77 Aligned_cols=72 Identities=15% Similarity=0.223 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIM-------EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~-------~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.+|..+....+..|.........|...+. .--..-...+.+...|+.+....+.++..+...+..|+.+.++
T Consensus 108 ~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~~ 186 (192)
T PF11180_consen 108 AQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQANE 186 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444444444444444544432 2222223445666666666667777777777777777666554
No 283
>KOG2751|consensus
Probab=69.04 E-value=1.2e+02 Score=29.87 Aligned_cols=103 Identities=22% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.+.+..+..+|-+++.+.+++-..+...+.+++.+-.+..++-...-++.....-+.-..+.++++++-+..=-+.+|+
T Consensus 184 e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qld 263 (447)
T KOG2751|consen 184 ELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLD 263 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHH
Confidence 34555566666666666555544444444444444433333333334444444444555556666777766666666666
Q ss_pred HHHhhhhhh----hhccCCCCcchhhh
Q psy5721 250 EPTRTLLNF----FRQSSPKGTLLYNH 272 (290)
Q Consensus 250 E~~~~l~~~----~~~~~~~~~~~~~~ 272 (290)
-+....+-. ++.+-+=||..+.|
T Consensus 264 kL~ktNv~n~~F~I~~~G~fgtIN~FR 290 (447)
T KOG2751|consen 264 KLRKTNVFNATFHIWHDGEFGTINNFR 290 (447)
T ss_pred HHHhhhhhhheeeEeecccccccccce
Confidence 666544332 36677777776665
No 284
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=68.93 E-value=62 Score=26.35 Aligned_cols=45 Identities=16% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 209 QEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 209 qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.++.+..+.+..+.++..+..++..+....+++..+.+.+.++..
T Consensus 92 ~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~ 136 (140)
T PRK03947 92 LDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQ 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666777776666666666666666554
No 285
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=68.81 E-value=1e+02 Score=31.15 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE 210 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe 210 (290)
+.......|.....++..+...+..|+.+|...+
T Consensus 289 ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K 322 (522)
T PF05701_consen 289 ELEEAKKELEKAKEEASSLRASVESLRSELEKEK 322 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444443333
No 286
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=68.80 E-value=62 Score=26.30 Aligned_cols=17 Identities=24% Similarity=0.372 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy5721 236 SAKEEVKEVLQALEEPT 252 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~ 252 (290)
.++.++.++...++++.
T Consensus 102 ~le~e~~~~~~r~~dL~ 118 (132)
T PF07926_consen 102 QLEKELSELEQRIEDLN 118 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 287
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.52 E-value=53 Score=32.29 Aligned_cols=83 Identities=31% Similarity=0.370 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+-++..++..+++....+.+..++.+.+++..- .+.+.+..+...+..++..+++++++++.++.++.
T Consensus 32 ~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~-----------~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T PRK05431 32 ELDEERRELQTELEELQAERNALSKEIGQAKRKG-----------EDAEALIAEVKELKEEIKALEAELDELEAELEELL 100 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555554322110 12334566667777788888888888888888888
Q ss_pred hhhhhhhhccCCCC
Q psy5721 253 RTLLNFFRQSSPKG 266 (290)
Q Consensus 253 ~~l~~~~~~~~~~~ 266 (290)
..|=++...+-|-|
T Consensus 101 ~~iPN~~~~~vP~g 114 (425)
T PRK05431 101 LRIPNLPHDSVPVG 114 (425)
T ss_pred HhCCCCCCccCCCC
Confidence 88877776666654
No 288
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.49 E-value=50 Score=25.10 Aligned_cols=44 Identities=25% Similarity=0.373 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
...+....+....+.++.++..+.........++++++..|.++
T Consensus 59 ~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 59 DKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566677777777888888888888888888877777653
No 289
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=68.43 E-value=1.6e+02 Score=30.91 Aligned_cols=59 Identities=22% Similarity=0.312 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR 229 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~ 229 (290)
...++.++..|+.++..+..-|..+.+...-|+.++..--.......-.+..++.++..
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~ 647 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELEN 647 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777778888877777777777777666666544444443333333334333333
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=67.95 E-value=1.3e+02 Score=32.12 Aligned_cols=34 Identities=41% Similarity=0.513 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
.+..+.+++++..++......+++++.++....+
T Consensus 525 l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~ 558 (782)
T PRK00409 525 LEELERELEQKAEEAEALLKEAEKLKEELEEKKE 558 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555555555555555554443333
No 291
>KOG4603|consensus
Probab=67.90 E-value=81 Score=27.32 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=44.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYA--EKLKEQIMEQEELITTARRDYEQLQG 225 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~--~klk~ql~~qee~~~~~~~e~~~l~~ 225 (290)
.+.....+.++...|.+.....+.||..+...+ +.+.+++...++.+...++.+..+..
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888888877654 56777777777777777766666654
No 292
>KOG0239|consensus
Probab=67.89 E-value=65 Score=33.74 Aligned_cols=84 Identities=20% Similarity=0.209 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHhhhh
Q psy5721 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENES----------AKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 187 ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~----------~~~e~kel~q~LeE~~~~l~ 256 (290)
-.+++|..+.+.+..++..+......+..+.++++..-..+..++.++.. -+.+.+.|..++.|++-+|.
T Consensus 238 ~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGnIR 317 (670)
T KOG0239|consen 238 TIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGNIR 317 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCce
Confidence 33444556666666666655555555554444444444433333333322 22666777888888888888
Q ss_pred hhhhccCCCCcchh
Q psy5721 257 NFFRQSSPKGTLLY 270 (290)
Q Consensus 257 ~~~~~~~~~~~~~~ 270 (290)
.+-|+.....+-..
T Consensus 318 V~CRvRP~~~~e~~ 331 (670)
T KOG0239|consen 318 VFCRVRPLLPSEKQ 331 (670)
T ss_pred EEEEecCCCccccc
Confidence 88887665554433
No 293
>PLN02320 seryl-tRNA synthetase
Probab=67.76 E-value=59 Score=32.82 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT 267 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~ 267 (290)
.+.+.++...+..++..+++++++++.++.++...|=++..-+=|-|.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G~ 179 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVGG 179 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 445666777888888888888999999999988888888877777653
No 294
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=67.64 E-value=71 Score=31.32 Aligned_cols=83 Identities=25% Similarity=0.394 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD-YEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e-~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
.+-++...+..+++....+.|..++.+..++..- .+ .+.+.++...+..++..++++.++++.++.++
T Consensus 34 ~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~-----------~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQAKRNELSKQIGKAKGQK-----------KDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555553322110 11 33455566677777777888888888888888
Q ss_pred HhhhhhhhhccCCCC
Q psy5721 252 TRTLLNFFRQSSPKG 266 (290)
Q Consensus 252 ~~~l~~~~~~~~~~~ 266 (290)
...|=++...+-|-|
T Consensus 103 ~~~lPN~~~~~vP~g 117 (418)
T TIGR00414 103 LLSIPNIPHESVPVG 117 (418)
T ss_pred HHhCCCCCCccCCCC
Confidence 877777776665544
No 295
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=67.56 E-value=59 Score=25.64 Aligned_cols=72 Identities=24% Similarity=0.303 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+..+..+|+.+..-..+.+..-..-...|+.+| ...+..+.+++.++..|..-|+.+..++..|+.+++...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~L-------k~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~ 74 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQL-------KEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEESE 74 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555555433333322223333344443 344445556666777777777777888888888877553
No 296
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=67.51 E-value=83 Score=27.31 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
+-..|.+-...+..+..-+..|.+++......|+++..++..+..+++.+...|
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555665566666666666666666666666666555554443333
No 297
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=66.56 E-value=1.6e+02 Score=30.10 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.+.+++..+...+..-...++.....-..+...+.+..+.+.....+...+...+..|..+-..+++.+..+...|.+.
T Consensus 347 ~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~i 426 (560)
T PF06160_consen 347 RELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREI 426 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444433333444444444444444444444444444444444444444444444444333
No 298
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.48 E-value=92 Score=27.45 Aligned_cols=31 Identities=6% Similarity=0.248 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+.+++..+..+++.++..++.=+++|+.+
T Consensus 163 ~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 163 KSVREDLDTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444444443
No 299
>KOG0946|consensus
Probab=66.28 E-value=1.9e+02 Score=31.01 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYA 199 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~ 199 (290)
.+......+..+|.+++..+.+.+...
T Consensus 748 ~l~~~q~~l~~~L~k~~~~~es~k~~~ 774 (970)
T KOG0946|consen 748 KLENDQELLTKELNKKNADIESFKATQ 774 (970)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 334445555566666666666555433
No 300
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=65.46 E-value=83 Score=26.53 Aligned_cols=23 Identities=39% Similarity=0.605 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQ 197 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~ 197 (290)
..+...+..+|.+.+..|..+..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555555555555555443
No 301
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=65.26 E-value=64 Score=30.36 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhHHHhhh
Q psy5721 234 NESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 234 ~~~~~~e~kel~q~LeE~~~~l 255 (290)
++..+.....+..++.++...|
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444333
No 302
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.15 E-value=88 Score=26.72 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
..+...++.|+.++..|..++..++++.+.|..=+
T Consensus 114 ~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im 148 (161)
T TIGR02894 114 ESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIM 148 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333
No 303
>PF14282 FlxA: FlxA-like protein
Probab=65.15 E-value=62 Score=25.43 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
...|+.++..+...+..++.+.-+.
T Consensus 53 ~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 53 IQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 304
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=65.05 E-value=41 Score=28.73 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.+++.++.++..|+.+++.+..++.+|.+.
T Consensus 104 ~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~ 133 (161)
T TIGR02894 104 KENERLKNQNESLQKRNEELEKELEKLRQR 133 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444333
No 305
>KOG0018|consensus
Probab=64.97 E-value=1e+02 Score=33.77 Aligned_cols=74 Identities=28% Similarity=0.323 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
..+.++.++.+..+++++..........+.+..+....+..++..++.....++++..++..+|.+.-.+|...
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~~~~~~~~~~e~n~eL~~~~~ql~da 477 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESLVSSAEEEPYELNEELVEVLDQLLDA 477 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 34445566666666666666666666666666666666666777777766666666666666666655555544
No 306
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=64.97 E-value=73 Score=27.71 Aligned_cols=85 Identities=21% Similarity=0.339 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQ------YAEKLKEQIMEQEELITTARRDYEQLQ----GEMTRLTQENESA 237 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~------~~~klk~ql~~qee~~~~~~~e~~~l~----~el~~lq~E~~~~ 237 (290)
......+.+++..+...+.+....|..... ....+-.++.+.+..+..+..++..+. +.+..+..+...+
T Consensus 68 ~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 68 QNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 444455666666666666666655555432 122223333444444444444444332 2455556666666
Q ss_pred HHHHHHHHHHHhHHH
Q psy5721 238 KEEVKEVLQALEEPT 252 (290)
Q Consensus 238 ~~e~kel~q~LeE~~ 252 (290)
++.......-+.-+.
T Consensus 148 ~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 148 KEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHhhHHHHH
Confidence 665555555444443
No 307
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.92 E-value=72 Score=25.65 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+..+....+....+.++.++..+..+.+.++..+++++..|.++-..
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555667777777777788888888888888888888877776544
No 308
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=64.60 E-value=1.9e+02 Score=32.95 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
.....+.....++.+++....+..+....+++....+.....
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~el~~~a~ 396 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAE 396 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444445554444444444444444444443333
No 309
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=64.53 E-value=13 Score=31.89 Aligned_cols=19 Identities=32% Similarity=0.532 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 230 LTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~L 248 (290)
|+.+++.+++|+++|.++|
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 310
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=64.49 E-value=59 Score=24.48 Aligned_cols=44 Identities=20% Similarity=0.368 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
+.+++......+..+-..++..+++...|..||+.+.+.|..|.
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555666666666666666666553
No 311
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.08 E-value=1.4e+02 Score=31.75 Aligned_cols=18 Identities=28% Similarity=0.482 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5721 189 DEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 189 d~ei~~~~~~~~klk~ql 206 (290)
..++......++++++++
T Consensus 531 ~~~~~~~~~e~~~~~~~l 548 (771)
T TIGR01069 531 NEHLEKLLKEQEKLKKEL 548 (771)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 312
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=64.01 E-value=48 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.++..|..+++.+..++..|..++.
T Consensus 32 e~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 32 EEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 313
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=63.96 E-value=53 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 224 QGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~ 245 (290)
..+-..|...++.+...+..+-
T Consensus 34 ~~ER~~L~ekne~Ar~rvEamI 55 (65)
T TIGR02449 34 REERAQLLEKNEQARQKVEAMI 55 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444433
No 314
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=63.85 E-value=1.4e+02 Score=31.94 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
++++++.+..+.+....++.+.-.++...+++.+-+......+.+++.+..++..+|.-+++....-=.++|++
T Consensus 347 QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQQAi 420 (1480)
T COG3096 347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQQAI 420 (1480)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 35666666666666666666666666666666666666556666666666666666665555554444444443
No 315
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.65 E-value=38 Score=32.23 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+.......|.++..++..+...+..|+.++.+.......++.+++..+.++.+-..=...+..|...=...++++..
T Consensus 229 ~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~~ 305 (344)
T PF12777_consen 229 ELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELEE 305 (344)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHHH
Confidence 33444444444444444444444444444444333333334444444444444444333444444333333333333
No 316
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=63.52 E-value=84 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 219 DYEQLQGEMTRLTQENE 235 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~ 235 (290)
.++.++.++..|+.++.
T Consensus 52 d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 52 DNEELKKQIEELQAKNK 68 (155)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 317
>KOG0994|consensus
Probab=63.51 E-value=1.8e+02 Score=32.61 Aligned_cols=40 Identities=15% Similarity=0.224 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
.+..++.+...-+..+....+++.-++.++.++.+.+.++
T Consensus 1711 ~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~r 1750 (1758)
T KOG0994|consen 1711 RLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINER 1750 (1758)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhhh
Confidence 3344444444444445555555555555555555555443
No 318
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=63.37 E-value=99 Score=31.43 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy5721 104 KGKLEKLELELSRWR 118 (290)
Q Consensus 104 ~~~i~~L~~el~~~~ 118 (290)
..++..++.++.+..
T Consensus 188 ~~eld~L~~ql~ELe 202 (563)
T TIGR00634 188 AQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 319
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=63.08 E-value=74 Score=25.17 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..-.+.......++..+..++..++.++..+...+....
T Consensus 70 ~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 70 EEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555666777777777777777777777776665
No 320
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.83 E-value=80 Score=28.89 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 188 KDEEINQQSQYAEKLKEQIMEQEELITTA 216 (290)
Q Consensus 188 kd~ei~~~~~~~~klk~ql~~qee~~~~~ 216 (290)
....|..+.+++.+|+.+++++...+..+
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33333344444444444444444443333
No 321
>KOG2264|consensus
Probab=62.67 E-value=83 Score=32.33 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIM 207 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~ 207 (290)
++..-++...+|++....++.+++.+.
T Consensus 98 le~krqel~seI~~~n~kiEelk~~i~ 124 (907)
T KOG2264|consen 98 LEVKRQELNSEIEEINTKIEELKRLIP 124 (907)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444433
No 322
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=62.62 E-value=56 Score=23.64 Aligned_cols=31 Identities=13% Similarity=0.344 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
++..+..+..-....+.+++.+...|++...
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444443
No 323
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=62.53 E-value=1.4e+02 Score=28.14 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLK 203 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk 203 (290)
.++.+.+......+++.+.+|..+...+..+.
T Consensus 77 ~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~ 108 (301)
T PF06120_consen 77 AKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQ 108 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555554444444433
No 324
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.49 E-value=84 Score=25.81 Aligned_cols=14 Identities=14% Similarity=0.150 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHhHH
Q psy5721 238 KEEVKEVLQALEEP 251 (290)
Q Consensus 238 ~~e~kel~q~LeE~ 251 (290)
...++....+.++.
T Consensus 98 ~~~L~~~~~e~eee 111 (150)
T PF07200_consen 98 LARLQAAASEAEEE 111 (150)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 325
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.47 E-value=76 Score=25.10 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5721 219 DYEQLQGEMTRLTQEN 234 (290)
Q Consensus 219 e~~~l~~el~~lq~E~ 234 (290)
++..+..++..++.+.
T Consensus 82 ei~~l~~~l~~l~~~~ 97 (126)
T PF13863_consen 82 EIKKLKAELEELKSEI 97 (126)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 326
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=62.31 E-value=1.1e+02 Score=27.05 Aligned_cols=87 Identities=17% Similarity=0.266 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----HHHHHHH------------H--HHHHHHHHHHHHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL----I-----TTARRDY------------E--QLQGEMTRLTQENE 235 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~----~-----~~~~~e~------------~--~l~~el~~lq~E~~ 235 (290)
..|..+|.+|++.|-.++..+.+..++..+.-.. + +...++. . +..+++-.....+.
T Consensus 60 ~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~q 139 (205)
T PF12240_consen 60 SNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQ 139 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHH
Confidence 3467778888888888888887776653211100 0 0001111 0 12456666677778
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
.++..++.|..++-|+.+.|-.+|..|.-+
T Consensus 140 emE~RIK~LhaqI~EKDAmIkVLQqrs~~~ 169 (205)
T PF12240_consen 140 EMENRIKALHAQIAEKDAMIKVLQQRSRKD 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 889999999999999999999999666543
No 327
>KOG1003|consensus
Probab=62.02 E-value=1.1e+02 Score=26.95 Aligned_cols=43 Identities=30% Similarity=0.346 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
...++.+..|+.....|...+...+.+...+...|++....|-
T Consensus 161 E~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~ 203 (205)
T KOG1003|consen 161 EFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQELE 203 (205)
T ss_pred HHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445777888888888888888888888888888887766654
No 328
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=62.00 E-value=1.8e+02 Score=29.16 Aligned_cols=43 Identities=9% Similarity=0.212 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.+.++++++-+...|..++..+.+...|+-+|...+++++.+|
T Consensus 389 ~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQ 431 (527)
T PF15066_consen 389 EKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQ 431 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHH
Confidence 3445555555555555555555555555555555555555444
No 329
>KOG0982|consensus
Probab=61.82 E-value=1.7e+02 Score=28.96 Aligned_cols=19 Identities=21% Similarity=0.309 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 186 DEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ 204 (290)
+..+.+...++..+..++.
T Consensus 307 qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 330
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=61.78 E-value=1.9e+02 Score=29.31 Aligned_cols=24 Identities=38% Similarity=0.549 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 93 YEKEKEKSSRYKGKLEKLELELSR 116 (290)
Q Consensus 93 ~~~~~~~~~~l~~~i~~L~~el~~ 116 (290)
+.+.+.++..|+..+..|+.+|..
T Consensus 297 L~~~k~E~~~L~~~vesL~~ELe~ 320 (522)
T PF05701_consen 297 LEKAKEEASSLRASVESLRSELEK 320 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 331
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=61.49 E-value=54 Score=32.30 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.......+......+.++++++..++.++...+...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344556666666666666666666666666665554
No 332
>KOG4593|consensus
Probab=61.45 E-value=2.2e+02 Score=29.96 Aligned_cols=76 Identities=16% Similarity=0.290 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE-------ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe-------e~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
........+.++...+..+.+.+.++...+.+.. .....+...+.+++.++.+.-.+++...+.+.+..+++.
T Consensus 138 ~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~ 217 (716)
T KOG4593|consen 138 NLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQELQASLE 217 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555555554443333 333333334444444444444444444444444444444
Q ss_pred HHH
Q psy5721 250 EPT 252 (290)
Q Consensus 250 E~~ 252 (290)
+..
T Consensus 218 e~~ 220 (716)
T KOG4593|consen 218 ERA 220 (716)
T ss_pred HHH
Confidence 443
No 333
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=60.90 E-value=32 Score=27.05 Aligned_cols=28 Identities=14% Similarity=0.198 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
+++..++.++..++++++.++.++..|+
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444444445555555555555553
No 334
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=60.22 E-value=17 Score=31.13 Aligned_cols=27 Identities=37% Similarity=0.481 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+.|..+..+|..|+..+++|+ .+++.+
T Consensus 27 E~L~~~~QRLkDE~RDLKqEl-~V~ek~ 53 (166)
T PF04880_consen 27 ENLREEVQRLKDELRDLKQEL-IVQEKL 53 (166)
T ss_dssp HHHHHCH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHh
Confidence 344444555555555555555 444433
No 335
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=60.08 E-value=83 Score=24.71 Aligned_cols=20 Identities=30% Similarity=0.420 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAE 200 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~ 200 (290)
+.+.+...+..+..+++.+.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLE 59 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 336
>PRK12705 hypothetical protein; Provisional
Probab=59.86 E-value=2e+02 Score=29.12 Aligned_cols=29 Identities=24% Similarity=0.511 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
+.++++.+......+.+...++...+..+
T Consensus 86 l~~~e~~l~~~~~~l~~~~~~l~~~~~~l 114 (508)
T PRK12705 86 LVQKEEQLDARAEKLDNLENQLEEREKAL 114 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 337
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=59.47 E-value=3.1e+02 Score=31.21 Aligned_cols=12 Identities=8% Similarity=-0.081 Sum_probs=6.2
Q ss_pred CChHhhhhhhhh
Q psy5721 56 FNESETKSTLDF 67 (290)
Q Consensus 56 ~~~~EtlstL~f 67 (290)
..|.+.+...-|
T Consensus 163 ~~Yr~~v~~~lf 174 (1353)
T TIGR02680 163 TDYRRAVDEELF 174 (1353)
T ss_pred HHHHHHHHHHhc
Confidence 456655544444
No 338
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.42 E-value=1.7e+02 Score=28.18 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=13.8
Q ss_pred cccccCccCCHHHHHHHHHHH
Q psy5721 76 NVVTVNEELTAEEWKRRYEKE 96 (290)
Q Consensus 76 ~~~~~n~~~~~~~~~~~~~~~ 96 (290)
.....-...++..|+..+++.
T Consensus 183 ~~~i~es~vd~~eWklEvERV 203 (359)
T PF10498_consen 183 PEEIIESKVDPAEWKLEVERV 203 (359)
T ss_pred hhhcccccCCHHHHHHHHHHH
Confidence 334445567788998777765
No 339
>KOG0804|consensus
Probab=59.01 E-value=2e+02 Score=28.72 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=20.2
Q ss_pred cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 165 SLSNEERQKLEEERERLYQ-QLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 165 ~~~~~e~~~l~e~~~~L~~-~L~ekd~ei~~~~~~~~klk~ql 206 (290)
...+..|..+++...++.+ +|.-.....+...+....++...
T Consensus 328 sqleSqr~y~e~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~ 370 (493)
T KOG0804|consen 328 SQLESQRKYYEQIMSEYEQSQLENQKQYYELLITEADSLKQES 370 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh
Confidence 3455566666665555555 44444444444334443333333
No 340
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=58.81 E-value=1.7e+02 Score=27.78 Aligned_cols=58 Identities=22% Similarity=0.339 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 195 QSQYAEKLKEQIMEQEELITT-ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 195 ~~~~~~klk~ql~~qee~~~~-~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+...+..++.++......+.. ..........+...|+.+.+..+.-...+...+++..
T Consensus 247 l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 247 LQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333221 1122344455677888888888887777777777666
No 341
>KOG4302|consensus
Probab=58.49 E-value=2.4e+02 Score=29.55 Aligned_cols=93 Identities=22% Similarity=0.240 Sum_probs=55.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIM--------EQEELITTARR--DYEQLQGEMTRLTQENE 235 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~--------~qee~~~~~~~--e~~~l~~el~~lq~E~~ 235 (290)
++....+.|..++..|+++..++-+++......+..+-..|. +.+..+..... ......+-+.+|.....
T Consensus 157 lsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~ 236 (660)
T KOG4302|consen 157 LSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVK 236 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHH
Confidence 344566677777777777777777777776666666665541 22222211111 11223445666777777
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.++++.++..+.+.++..++.++
T Consensus 237 ~l~~~k~qr~~kl~~l~~~~~~L 259 (660)
T KOG4302|consen 237 KLKEEKKQRLQKLQDLRTKLLEL 259 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777666665
No 342
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=58.44 E-value=1.3e+02 Score=26.39 Aligned_cols=15 Identities=13% Similarity=0.264 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLY 182 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~ 182 (290)
+...+++++.+..+.
T Consensus 29 ~q~ird~e~~l~~a~ 43 (221)
T PF04012_consen 29 EQAIRDMEEQLRKAR 43 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444433333
No 343
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.70 E-value=2e+02 Score=28.28 Aligned_cols=14 Identities=29% Similarity=0.171 Sum_probs=11.6
Q ss_pred hHhHHHHHHHHHHc
Q psy5721 5 ACGALRNVISALAD 18 (290)
Q Consensus 5 SL~~L~~vi~aL~~ 18 (290)
+..+||-||-++.+
T Consensus 8 ~vlvLgGVIA~~gD 21 (499)
T COG4372 8 FVLVLGGVIAYAGD 21 (499)
T ss_pred HHHHHHhHHHHHhh
Confidence 56789999999887
No 344
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=57.51 E-value=2e+02 Score=28.26 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
++........+..+.+|++....+.....++....+.+..-++..+.++.+...++.|...++
T Consensus 217 ~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le 279 (499)
T COG4372 217 EELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666666666666666666666666666666666666666665554333
No 345
>KOG0963|consensus
Probab=57.50 E-value=2.4e+02 Score=29.22 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWR 118 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~ 118 (290)
..|....++.-.+++.++.++..+..++...+
T Consensus 110 ~~~l~k~~~~~~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 110 AELLNKQQKASEENEELKEELEEVNNELADLK 141 (629)
T ss_pred HHHhhhhhhhhhhHHHHHHHHHHHHHHHhhhh
Confidence 34445555544556666777766666665544
No 346
>KOG0979|consensus
Probab=56.78 E-value=2.7e+02 Score=30.62 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=14.9
Q ss_pred CCChhhhhchhhcCCCCcceEEEe
Q psy5721 27 RDSKLTRILQESLGGNARTTIIIC 50 (290)
Q Consensus 27 RdSkLT~lL~~~l~g~~~t~mi~~ 50 (290)
.+-+-...|..++|-+....+|+|
T Consensus 461 k~~~~A~~lEn~v~~~~~~~Fi~~ 484 (1072)
T KOG0979|consen 461 KNAEFAKYLENFVGFNDLKAFICC 484 (1072)
T ss_pred CChHHHHHHHcccCccccceeeee
Confidence 444555666677777766666654
No 347
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=56.70 E-value=2.4e+02 Score=28.93 Aligned_cols=8 Identities=25% Similarity=0.148 Sum_probs=3.7
Q ss_pred CCCcchhh
Q psy5721 264 PKGTLLYN 271 (290)
Q Consensus 264 ~~~~~~~~ 271 (290)
..+++.++
T Consensus 274 ~~~~~~~~ 281 (555)
T TIGR03545 274 KSGDLKNF 281 (555)
T ss_pred CcccHHHH
Confidence 44445543
No 348
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.60 E-value=1.2e+02 Score=25.65 Aligned_cols=33 Identities=30% Similarity=0.344 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccc
Q psy5721 92 RYEKEKEKSSRYKGKLEKLELELSRWRN-GETVK 124 (290)
Q Consensus 92 ~~~~~~~~~~~l~~~i~~L~~el~~~~~-~~~~~ 124 (290)
...+.+-.+..++.++..++..+..... |++..
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~ 40 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKEELGEGLH 40 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3455566677788888888888776553 44443
No 349
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.38 E-value=56 Score=25.70 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q psy5721 219 DYEQLQGEMT 228 (290)
Q Consensus 219 e~~~l~~el~ 228 (290)
++..|..++.
T Consensus 49 ~n~~L~~eI~ 58 (105)
T PRK00888 49 RNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 350
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.08 E-value=1.9e+02 Score=27.63 Aligned_cols=18 Identities=28% Similarity=0.250 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHhHHH
Q psy5721 235 ESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~ 252 (290)
+.+++++++....+.+-.
T Consensus 71 ~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 71 EKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHhhHHHHH
Confidence 333334444443333333
No 351
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.04 E-value=1.7e+02 Score=26.99 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
..+..+..++.....+.+.+++++..|.++.+++.....
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444555555555555555555555555544443
No 352
>PRK11281 hypothetical protein; Provisional
Probab=55.84 E-value=1.9e+02 Score=32.20 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ 204 (290)
++.+++.+.+.+++.+-.+++....+.++++++
T Consensus 76 ~~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~ 108 (1113)
T PRK11281 76 DRQKEETEQLKQQLAQAPAKLRQAQAELEALKD 108 (1113)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 444556666777777766666666666666555
No 353
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=55.65 E-value=2.6e+02 Score=29.13 Aligned_cols=90 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
+...|...+.....+|..+.+.+..+..++..++..+.....++.+...+---|++-....+..-+.+.+-...+...+.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666666666666665555555555555555554444444445555555555555555555555
Q ss_pred hhhhccCCCC
Q psy5721 257 NFFRQSSPKG 266 (290)
Q Consensus 257 ~~~~~~~~~~ 266 (290)
.++-..+.+.
T Consensus 160 ~~q~~~R~a~ 169 (632)
T PF14817_consen 160 QLQDIQRKAK 169 (632)
T ss_pred HHHHHHhhcc
Confidence 5555544333
No 354
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=55.43 E-value=96 Score=31.72 Aligned_cols=21 Identities=24% Similarity=0.586 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5721 222 QLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~k 242 (290)
...+++..++.+..+.++.++
T Consensus 216 ~~~~e~d~lk~e~~~~~~~i~ 236 (555)
T TIGR03545 216 KIKEEFDKLKKEGKADKQKIK 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333
No 355
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=55.29 E-value=1.4e+02 Score=30.95 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 228 TRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
..+..+.++.+.++.++..+-+++..
T Consensus 601 ~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 601 TACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 356
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=55.11 E-value=36 Score=32.82 Aligned_cols=30 Identities=10% Similarity=0.278 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+..+..+.........+++.+.+.|+++..
T Consensus 157 Ed~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 157 EDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333334444444444444443
No 357
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=54.74 E-value=88 Score=28.76 Aligned_cols=12 Identities=8% Similarity=0.321 Sum_probs=7.1
Q ss_pred hhhhchhhcCCC
Q psy5721 31 LTRILQESLGGN 42 (290)
Q Consensus 31 LT~lL~~~l~g~ 42 (290)
+|.|++|.-...
T Consensus 36 It~LIrD~~~~E 47 (259)
T PF08657_consen 36 ITSLIRDTEPHE 47 (259)
T ss_pred hHHHhcCCCHhh
Confidence 667776665443
No 358
>smart00338 BRLZ basic region leucin zipper.
Probab=54.71 E-value=72 Score=22.38 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 215 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 215 ~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.++.++..++.+...|..++..+..++..|.+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 359
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=54.57 E-value=67 Score=22.99 Aligned_cols=20 Identities=40% Similarity=0.630 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5721 225 GEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel 244 (290)
.++..++.+++.++.+++.+
T Consensus 31 ~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 31 KEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333
No 360
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=54.50 E-value=1.2e+02 Score=24.69 Aligned_cols=46 Identities=17% Similarity=0.308 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
..++....+....+.++-++..|+.+-+...+++++|+.+|..+-.
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677788888888888888888888888888888888876543
No 361
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=54.35 E-value=1.9e+02 Score=27.18 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
.+++.+..+|.|+-=+++.+.+....-+-+...+++.|.+.
T Consensus 218 s~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f 258 (305)
T PF14915_consen 218 SLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555555555555555555556666666443
No 362
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=54.18 E-value=1.8e+02 Score=26.80 Aligned_cols=8 Identities=25% Similarity=0.256 Sum_probs=4.2
Q ss_pred CCCCcchh
Q psy5721 263 SPKGTLLY 270 (290)
Q Consensus 263 ~~~~~~~~ 270 (290)
+...|++-
T Consensus 239 ~~~~G~l~ 246 (301)
T PF14362_consen 239 SANDGFLA 246 (301)
T ss_pred ccCCCHHH
Confidence 55555553
No 363
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=53.89 E-value=88 Score=23.12 Aligned_cols=32 Identities=25% Similarity=0.312 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.+++-.+..++..++.+++.++..+.++..++
T Consensus 42 ~keNieLKve~~~L~~el~~~~~~l~~a~~~~ 73 (75)
T PF07989_consen 42 LKENIELKVEVESLKRELQEKKKLLKEAEKAI 73 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444433
No 364
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=53.88 E-value=96 Score=23.56 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
....+-.|+..++.+|-.|++.+.++...+
T Consensus 55 ~~keLL~EIA~lE~eV~~LE~~v~~L~~~l 84 (88)
T PF14389_consen 55 KAKELLEEIALLEAEVAKLEQKVLSLYRQL 84 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666665555555443
No 365
>PF14282 FlxA: FlxA-like protein
Probab=53.86 E-value=1.1e+02 Score=24.07 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQL 185 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L 185 (290)
....|.+.+..|..+|
T Consensus 20 ~I~~L~~Qi~~Lq~ql 35 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQL 35 (106)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 366
>PF15294 Leu_zip: Leucine zipper
Probab=53.81 E-value=1.9e+02 Score=26.95 Aligned_cols=46 Identities=28% Similarity=0.429 Sum_probs=26.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
....++..+.++...|+..+...+......-.+-.++..+|.+...
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777776666555555444444455555444444
No 367
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.79 E-value=1.5e+02 Score=25.62 Aligned_cols=76 Identities=13% Similarity=0.329 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.++.+.+.+..|+.++.....+...+...+..++..+ ......+......++.-+..-...+..|+.+++
T Consensus 104 ~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l----------~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~ 173 (184)
T PF05791_consen 104 DKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKL----------QKDSRNLKTDVDELQSILAGENGDIPQLQKQIE 173 (184)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHH
Confidence 3445555555555555444444444444444333332 233334444445555555555555666666665
Q ss_pred HHHhhh
Q psy5721 250 EPTRTL 255 (290)
Q Consensus 250 E~~~~l 255 (290)
+....+
T Consensus 174 ~~~~~I 179 (184)
T PF05791_consen 174 NLNEEI 179 (184)
T ss_dssp HHTGGG
T ss_pred HHHHHH
Confidence 555443
No 368
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=53.67 E-value=1.3e+02 Score=25.06 Aligned_cols=12 Identities=25% Similarity=0.335 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLD 186 (290)
Q Consensus 175 ~e~~~~L~~~L~ 186 (290)
-.....|..+|.
T Consensus 26 l~~~~~LE~qL~ 37 (160)
T PF13094_consen 26 LDRKRALERQLA 37 (160)
T ss_pred HHHHHHHHHHHH
Confidence 333444444443
No 369
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=53.38 E-value=1.9e+02 Score=29.47 Aligned_cols=42 Identities=21% Similarity=0.359 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 204 EQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 204 ~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
..+..+..-.+.+....+..+..+..++.+-..+.+.+..|.
T Consensus 368 ~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~Lr 409 (570)
T COG4477 368 ENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLR 409 (570)
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333444444444444444444444333333333333
No 370
>PF15294 Leu_zip: Leucine zipper
Probab=53.24 E-value=1.5e+02 Score=27.70 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQ 183 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~ 183 (290)
.+...+..+...++.
T Consensus 139 ~EN~kLk~rl~~le~ 153 (278)
T PF15294_consen 139 EENEKLKERLKSLEK 153 (278)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 371
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=53.12 E-value=62 Score=23.18 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
.+..++..++.+++.+++++.+|+.+++.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555555555555555555555
No 372
>KOG4302|consensus
Probab=53.11 E-value=2.9e+02 Score=28.93 Aligned_cols=93 Identities=25% Similarity=0.265 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH---HHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ----EELI---TTA-RRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~q----ee~~---~~~-~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
.+....+....+.|+.+.+++-.++..+...++++-..+... ...+ ..+ .+.++.++.++..|+.|-....+
T Consensus 102 ke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rle 181 (660)
T KOG4302|consen 102 KEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLE 181 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666777888888888888888888888877776555 1111 111 26677777778888888777777
Q ss_pred HHHHHHHHHhHHHhhhhhhhh
Q psy5721 240 EVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 240 e~kel~q~LeE~~~~l~~~~~ 260 (290)
++-++.+++..+-..|..-++
T Consensus 182 kv~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 182 KVLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHhCCCcc
Confidence 777777777777766665544
No 373
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=52.72 E-value=80 Score=24.63 Aligned_cols=7 Identities=43% Similarity=0.354 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy5721 181 LYQQLDE 187 (290)
Q Consensus 181 L~~~L~e 187 (290)
|+.+|+-
T Consensus 6 LR~qLqF 12 (96)
T PF11365_consen 6 LRRQLQF 12 (96)
T ss_pred HHHHHHH
Confidence 3333333
No 374
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=52.58 E-value=91 Score=22.90 Aligned_cols=40 Identities=25% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 194 QQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE 233 (290)
Q Consensus 194 ~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E 233 (290)
.+...+.+|+.++.+.+..+..+...+.....++..++..
T Consensus 30 ~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 30 KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666665555555555555555555444443
No 375
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.28 E-value=1.7e+02 Score=26.06 Aligned_cols=88 Identities=19% Similarity=0.270 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ------------IMEQEELITTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q------------l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
.+.+.++...|.+.+..-..++......+..++.. +.+.+..+..........+..+......+....
T Consensus 33 ~~~~~~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~ 112 (240)
T PF12795_consen 33 IKKQKKRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEIQ 112 (240)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666667777777667776666666666443 234444444444444444444444444443333
Q ss_pred HHHHHHHHHHhHHHhhhhhh
Q psy5721 239 EEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 239 ~e~kel~q~LeE~~~~l~~~ 258 (290)
.......+.+.+....+.+.
T Consensus 113 ~~p~~aq~~l~~~~~~l~ei 132 (240)
T PF12795_consen 113 TRPERAQQQLSEARQRLQEI 132 (240)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 33333333344433333333
No 376
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=52.28 E-value=28 Score=19.94 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q psy5721 99 KSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 99 ~~~~l~~~i~~L~~el~~~~~ 119 (290)
++..++..|..|+.+|...+.
T Consensus 2 E~~rlr~rI~dLer~L~~C~~ 22 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECRR 22 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHhc
Confidence 467788999999999987653
No 377
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=52.18 E-value=1.2e+02 Score=24.20 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY 270 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~ 270 (290)
+........+++.+.+..|.+.++.....|-.- ..|.+.++.
T Consensus 39 ~kk~~~~a~~~A~kRN~~LLqDie~~eksLq~r---~~p~P~~~~ 80 (109)
T PF15134_consen 39 EKKSQQQASEAAKKRNKQLLQDIEAAEKSLQTR---PLPPPEVVS 80 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCCchHHH
Confidence 334455667889999999999999999888443 666666654
No 378
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=52.13 E-value=32 Score=27.00 Aligned_cols=41 Identities=12% Similarity=0.214 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
++...++.+...+..++...+..+..++.+|.+++..+..+
T Consensus 44 ~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~~~~ 84 (100)
T PF06428_consen 44 RERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVMESM 84 (100)
T ss_dssp HHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33334444444444444444444444444555554444443
No 379
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=51.87 E-value=78 Score=25.94 Aligned_cols=50 Identities=30% Similarity=0.378 Sum_probs=30.8
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 180 RLYQ-QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR 229 (290)
Q Consensus 180 ~L~~-~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~ 229 (290)
.||. .|+.||+-|..++.+..-||+-+...++.+..-++.++.+++++..
T Consensus 74 ~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 74 NLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444 4566777777777666666666666666666656666655555443
No 380
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=51.56 E-value=3.1e+02 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
-..+.++.+|+++.+..++-...+.+..+|...
T Consensus 366 p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 366 PSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556777888888888877777777777653
No 381
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.44 E-value=1.9e+02 Score=26.33 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 89 WKRRYEKEKEKSSRYKGKLEKLELE 113 (290)
Q Consensus 89 ~~~~~~~~~~~~~~l~~~i~~L~~e 113 (290)
+...+++.++.+.+|..-+..+...
T Consensus 11 l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 11 LEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555566666666666666654
No 382
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=51.14 E-value=1.5e+02 Score=29.03 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
...+..+...++++++.+++++.++...+.+.
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777777776666553
No 383
>KOG0978|consensus
Probab=50.45 E-value=3.3e+02 Score=28.75 Aligned_cols=21 Identities=24% Similarity=0.271 Sum_probs=8.4
Q ss_pred HHHHHHHHHhHHHhhhhhhhh
Q psy5721 240 EVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 240 e~kel~q~LeE~~~~l~~~~~ 260 (290)
..+.++.+++.+.-.+-...+
T Consensus 602 k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 602 KRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 333444444444443333333
No 384
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.42 E-value=1e+02 Score=22.78 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q psy5721 206 IMEQEELITT 215 (290)
Q Consensus 206 l~~qee~~~~ 215 (290)
+..|+..+..
T Consensus 17 ~AfQE~tiee 26 (72)
T COG2900 17 LAFQEQTIEE 26 (72)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 385
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=50.28 E-value=1.8e+02 Score=25.75 Aligned_cols=29 Identities=14% Similarity=0.191 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+-.+.-.+...+..++.++..++++..++
T Consensus 187 ~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 187 LVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444443
No 386
>KOG1003|consensus
Probab=50.16 E-value=1.8e+02 Score=25.69 Aligned_cols=11 Identities=9% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEM 227 (290)
Q Consensus 217 ~~e~~~l~~el 227 (290)
+++.+.++..+
T Consensus 171 eke~DdlE~kl 181 (205)
T KOG1003|consen 171 EKERDDLEEKL 181 (205)
T ss_pred cccHHHHHHhh
Confidence 33333333333
No 387
>KOG1760|consensus
Probab=50.05 E-value=1.4e+02 Score=24.40 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-------H------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ---EEL-------I------TTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~q---ee~-------~------~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
.+-.+++.-..+...+|...+..++.+..-..+. .+. + -....-...+++....+..+++.++.
T Consensus 23 N~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 23 NEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666666555555544422111 111 0 12334455666666777777777777
Q ss_pred HHHHHHHHHhHHHhhhhhh
Q psy5721 240 EVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 240 e~kel~q~LeE~~~~l~~~ 258 (290)
+.+.....++++++.|-..
T Consensus 103 ~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 103 ELESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766443
No 388
>PHA01750 hypothetical protein
Probab=50.05 E-value=54 Score=23.79 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.+.++..|..|+++.+-++..++++..|.+..+
T Consensus 40 V~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 40 VNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 345555666666666666666666666655544
No 389
>KOG2685|consensus
Probab=49.90 E-value=2.6e+02 Score=27.48 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE 210 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe 210 (290)
+...+|+.++....+||.+....|+.++.-|.+.+
T Consensus 285 dar~kL~~ql~k~leEi~~~e~~I~~le~airdK~ 319 (421)
T KOG2685|consen 285 DARNKLEWQLAKTLEEIADAENNIEALERAIRDKE 319 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccc
Confidence 45566777777777777777777777666654433
No 390
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=49.55 E-value=1.8e+02 Score=25.37 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEIN 193 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~ 193 (290)
.+++++..+..+++++=+.+.
T Consensus 83 nlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 83 NLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666655444443
No 391
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.34 E-value=3.1e+02 Score=28.81 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+.++.+|+++.+..++-...+.+.+++....
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~ 405 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAASR 405 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567778888888888888888877776533
No 392
>KOG0612|consensus
Probab=49.18 E-value=4.3e+02 Score=29.75 Aligned_cols=46 Identities=17% Similarity=0.148 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 192 INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 192 i~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
........++.+.+-....+.+..++.++..+++.+.....++...
T Consensus 604 ~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~ 649 (1317)
T KOG0612|consen 604 NKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKV 649 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHH
Confidence 3333444444444444445555555555555555554444444333
No 393
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=49.12 E-value=2.7e+02 Score=27.29 Aligned_cols=69 Identities=16% Similarity=0.260 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
.+.+..++|+..++.+.-.++++++-++....--.++. ..-+..-+....+++.++.+++++|-+..+.
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e~dpD~~n--k~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~ 71 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYEKDPDDVN--KSTLQQRQSVVSALQDKIAELKRQLADRVAA 71 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556666666666666666666555554433222222 1234445556677777777777777765443
No 394
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=48.66 E-value=43 Score=26.74 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 205 QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 205 ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
++..-+..+......+..|..++..+...-..+++.+.-+..+-.|+...|..+.
T Consensus 44 ~V~~wDr~Lv~n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE 98 (116)
T PF05064_consen 44 QVNAWDRQLVENGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLE 98 (116)
T ss_dssp -----TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444444444444444444444444433
No 395
>PLN02678 seryl-tRNA synthetase
Probab=48.39 E-value=1.7e+02 Score=29.19 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
++...+..+...++++++.++.++.++...+.++
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777888888888888888888777643
No 396
>KOG0709|consensus
Probab=48.29 E-value=46 Score=33.08 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcc
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTL 268 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~ 268 (290)
+..++..+.....+...|+.+.+.++..+..|.++|..++..++...--+.+.||-
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC 329 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTC 329 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchh
Confidence 45566666667777778888888888888888888888888887777777777753
No 397
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=48.10 E-value=2.4e+02 Score=26.54 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 196 SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE 233 (290)
Q Consensus 196 ~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E 233 (290)
...+.++...|..++..+..+++++..++..+..++.+
T Consensus 73 ~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~ 110 (301)
T PF06120_consen 73 RANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQ 110 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666544443
No 398
>PRK11546 zraP zinc resistance protein; Provisional
Probab=47.73 E-value=1.7e+02 Score=24.54 Aligned_cols=27 Identities=26% Similarity=0.183 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQ 195 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~ 195 (290)
...+++..+...|+++|-.|..|++.+
T Consensus 54 ~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 54 KIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666665555555443
No 399
>KOG3433|consensus
Probab=47.70 E-value=1.9e+02 Score=25.30 Aligned_cols=81 Identities=17% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
++|++..+...+......+.+.....-.+..++.-.+...++.++.+..+.+..++..++...-..-+....+....-|.
T Consensus 84 qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~~K~~~ea 163 (203)
T KOG3433|consen 84 QELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHLEKTMAEA 163 (203)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333333333322222233333333333344444444444433333333333333333333
Q ss_pred H
Q psy5721 252 T 252 (290)
Q Consensus 252 ~ 252 (290)
+
T Consensus 164 a 164 (203)
T KOG3433|consen 164 A 164 (203)
T ss_pred H
Confidence 3
No 400
>KOG4807|consensus
Probab=47.70 E-value=2.9e+02 Score=27.23 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHHH
Q psy5721 103 YKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLY 182 (290)
Q Consensus 103 l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~e~~~~L~ 182 (290)
|+.+|+.|+.++.-||-...-+.......++.. .|..........+-....-..-+++++.|+
T Consensus 296 L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~-----------------~~~~~~~qatCERgfAaMEetHQkkiEdLQ 358 (593)
T KOG4807|consen 296 LEKEVQALRAQLEAWRLQGEAPQSALRSQEDGH-----------------IPPGYISQATCERGFAAMEETHQKKIEDLQ 358 (593)
T ss_pred HHHHHHHHHHHHHHHHHhccCchhhHhhhhhcc-----------------CCccHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy5721 183 QQLDEKDEEINQQSQYA--------------------EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE--- 239 (290)
Q Consensus 183 ~~L~ekd~ei~~~~~~~--------------------~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~--- 239 (290)
.+.+..-+.+.+-+.-+ +.+..++.......+..+---..+.+++..+++|++.+.+
T Consensus 359 RqHqRELekLreEKdrLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYS 438 (593)
T KOG4807|consen 359 RQHQRELEKLREEKDRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYS 438 (593)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ----HHHHHHHHHhHHHhhhhhhhh
Q psy5721 240 ----EVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 240 ----e~kel~q~LeE~~~~l~~~~~ 260 (290)
++.-|.+++++....|.--||
T Consensus 439 QKCLEnahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 439 QKCLENAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
No 401
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.50 E-value=1.8e+02 Score=28.60 Aligned_cols=29 Identities=31% Similarity=0.335 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
.+..+...+++++++++.++.+....+.+
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555554444443
No 402
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=47.47 E-value=2.3e+02 Score=26.17 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q psy5721 233 ENESAKEEVKEV 244 (290)
Q Consensus 233 E~~~~~~e~kel 244 (290)
|.+.++.+++.+
T Consensus 226 EyEklE~EL~~l 237 (267)
T PF10234_consen 226 EYEKLEEELQKL 237 (267)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 403
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=47.34 E-value=3.1e+02 Score=27.56 Aligned_cols=84 Identities=14% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
......+..+...+..++......+..+ ...+.+.......+......+..++.++..++..++..++...+-.+.
T Consensus 28 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~ 103 (475)
T PRK10361 28 AQQKAEQLAEREEMVAELSAAKQQITQS----EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQ 103 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHHhhh
Q psy5721 248 LEEPTRTL 255 (290)
Q Consensus 248 LeE~~~~l 255 (290)
|++....|
T Consensus 104 l~~~~~~L 111 (475)
T PRK10361 104 MINSEQRL 111 (475)
T ss_pred HHHHHHHH
No 404
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=47.26 E-value=21 Score=37.41 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
++.++..|+.+++.+.+++..|+.+|
T Consensus 508 L~~~~~~Le~e~~~L~~~~~~Le~~l 533 (722)
T PF05557_consen 508 LQKEIEELERENERLRQELEELESEL 533 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 405
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=47.06 E-value=3.2e+02 Score=27.72 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 209 QEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 209 qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
....+..+.......+.+...+..++..+.+.+..|+++|+-
T Consensus 439 f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 439 FYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444433
No 406
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=47.06 E-value=1.9e+02 Score=24.95 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 228 TRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
-...+|.+.+-+.+..|++.+....
T Consensus 121 l~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 121 LQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 407
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=46.96 E-value=2.1e+02 Score=25.47 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhHHHhhhh
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~ 256 (290)
..++..+.+.+.+.++.-..|.
T Consensus 109 ~~ak~~l~~aE~~~e~~~~~L~ 130 (207)
T PF05546_consen 109 EEAKEALEEAEEKVEEAFDDLM 130 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445444444443
No 408
>KOG4571|consensus
Probab=46.93 E-value=89 Score=29.24 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+.+.++.+..+|..+++.+..||+.|.|.+.|
T Consensus 256 e~~~Le~rN~~LK~qa~~lerEI~ylKqli~e 287 (294)
T KOG4571|consen 256 ELEGLEKRNEELKDQASELEREIRYLKQLILE 287 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444443
No 409
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=46.84 E-value=3e+02 Score=27.18 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc
Q psy5721 98 EKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 98 ~~~~~l~~~i~~L~~el~~~~~ 119 (290)
..+..++.++...+.++..++.
T Consensus 168 ~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 168 EQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777654
No 410
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=46.61 E-value=1.3e+02 Score=22.78 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q psy5721 206 IMEQEELIT 214 (290)
Q Consensus 206 l~~qee~~~ 214 (290)
+..++..+.
T Consensus 61 i~~~~~~~~ 69 (123)
T PF02050_consen 61 IQQQQQELE 69 (123)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 411
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=46.58 E-value=2.3e+02 Score=28.93 Aligned_cols=80 Identities=28% Similarity=0.360 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+++++..+.+.+++-.+.+.....--..+...+...+..+.....+..++.+.+..|...=-.+++....+..+|.+.+
T Consensus 351 ~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eik 430 (570)
T COG4477 351 KFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666555555556666677777777777777777777777777666666666666666665554
No 412
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=46.37 E-value=2.6e+02 Score=26.45 Aligned_cols=31 Identities=35% Similarity=0.577 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
..+..++.+|..+.-++.+.....+++-+++
T Consensus 15 ~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 15 EQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444444443
No 413
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=46.30 E-value=85 Score=30.28 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
...+..+++.+..+...++...+.++.+...+..+...+.++.-
T Consensus 143 ~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 143 NSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555555555443
No 414
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=45.98 E-value=1.3e+02 Score=22.88 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKD 189 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd 189 (290)
.+.+++++...+..|+.-+
T Consensus 7 Id~lEekl~~cr~~le~ve 25 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVE 25 (85)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 415
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=45.84 E-value=1.3e+02 Score=27.25 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+..++.+.+..+..++....+|.+-+..-+ .-.++-.++.++.+.+.+++.++.+++.|.+..+
T Consensus 130 vT~~y~D~~arl~~l~~~~~rl~~ll~ka~-----~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 130 VTEQYVDLEARLKNLEAEEERLLELLEKAK-----TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444455555554444444443332111 1234445666677777777777777766666544
No 416
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=44.96 E-value=1.7e+02 Score=23.97 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
+...++....+...+-++....+.++..-.-+..+-+++...+..+.++...
T Consensus 74 l~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 74 LEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3444444455555555666666666666556666666666666666655443
No 417
>PRK10698 phage shock protein PspA; Provisional
Probab=44.72 E-value=2.3e+02 Score=25.26 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE 210 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe 210 (290)
+..+.+.+..|..++..-+..+.++...+.+|+.++.+.+
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak 133 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETR 133 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666666666665555555555555554333
No 418
>KOG4196|consensus
Probab=44.57 E-value=1.8e+02 Score=24.00 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
|+.+...|+.+++.+++++..+..+++-..
T Consensus 79 LE~~k~~L~qqv~~L~~e~s~~~~E~da~k 108 (135)
T KOG4196|consen 79 LEKEKAELQQQVEKLKEENSRLRRELDAYK 108 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555554444444
No 419
>KOG4571|consensus
Probab=44.55 E-value=84 Score=29.38 Aligned_cols=41 Identities=24% Similarity=0.439 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+-+.+..++..|...|+.+++.+.+++.++..++..++++.
T Consensus 249 e~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 249 EKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666666666666666555543
No 420
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=44.13 E-value=1.3e+02 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 200 EKLKEQIMEQEELITTA 216 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~ 216 (290)
..|+.++.+.++++..+
T Consensus 8 k~L~~kL~~K~eEI~rL 24 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRL 24 (76)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 421
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=44.05 E-value=2.8e+02 Score=26.15 Aligned_cols=25 Identities=12% Similarity=0.035 Sum_probs=16.3
Q ss_pred EeeCCCCCChHhhhhhhhhhhhccc
Q psy5721 49 ICCSPASFNESETKSTLDFGRRAKT 73 (290)
Q Consensus 49 ~~vsp~~~~~~EtlstL~fa~rak~ 73 (290)
.+..|+.+|..--|+-|.|+...+.
T Consensus 112 d~~gpe~cDasALLNlin~Cd~F~~ 136 (307)
T PF15112_consen 112 DKTGPEECDASALLNLINSCDHFKK 136 (307)
T ss_pred ccCChhhcCHHHHHHHHHHhhcccc
Confidence 3455777777777777766655544
No 422
>KOG0993|consensus
Probab=43.94 E-value=3.3e+02 Score=26.93 Aligned_cols=26 Identities=8% Similarity=0.124 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy5721 95 KEKEKSSRYKGKLEKLELELSRWRNG 120 (290)
Q Consensus 95 ~~~~~~~~l~~~i~~L~~el~~~~~~ 120 (290)
....+...|+.++..-.+++...++-
T Consensus 35 a~q~dl~~lrtql~~a~aeme~ikai 60 (542)
T KOG0993|consen 35 AAQDDLGHLRTQLWEAQAEMENIKAI 60 (542)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777777777777666643
No 423
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=43.93 E-value=4.1e+02 Score=28.02 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKE 239 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~ 239 (290)
+..+...+.-..+.++.....++.|.++....+..++.-......|+.++..|+.|++.+++
T Consensus 589 ~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 589 MKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444555555555555555555555566666667777777655544
No 424
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=43.85 E-value=2.8e+02 Score=26.05 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q psy5721 233 ENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~ 251 (290)
+.....+++..+...++-+
T Consensus 280 er~~~~~~~~~~~~k~~kL 298 (309)
T PF09728_consen 280 ERQKLEKELEKLKKKIEKL 298 (309)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444443333333
No 425
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=43.85 E-value=99 Score=24.24 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhccC
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~ 263 (290)
+-..++.++..|..+|.+....|..++.|..
T Consensus 45 e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~ 75 (100)
T PF06428_consen 45 ERAALEEKNEQLEKQLKEKEALLESLQAQLK 75 (100)
T ss_dssp HHHHHHHHHHHHHHCTTHHCHCCCHCTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777777777766666665543
No 426
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=43.54 E-value=2.7e+02 Score=25.70 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=25.9
Q ss_pred CCCcceEEEeeCCCCCChHhhhhh-------hhhhhhccccccc
Q psy5721 41 GNARTTIIICCSPASFNESETKST-------LDFGRRAKTIKNV 77 (290)
Q Consensus 41 g~~~t~mi~~vsp~~~~~~Etlst-------L~fa~rak~i~~~ 77 (290)
|.+.-.+|..-.++..+++|-.+| |-||..++.+...
T Consensus 102 ~d~q~LVvlss~~se~~~s~~r~~~p~pAPP~~FAD~mRtlv~p 145 (311)
T PF04642_consen 102 GDPQDLVVLSSRESETRESERRSTSPLPAPPMPFADTMRTLVHP 145 (311)
T ss_pred CCCcceEEecccchhhhhhccccCCCCCCCCccHHHHHHhhcCC
Confidence 335556666666677778888887 7899888876543
No 427
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=43.35 E-value=3.6e+02 Score=27.13 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 87 EEWKRRYEKEKEKSSRYKGKLEKL 110 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~i~~L 110 (290)
..+...|.....+++.++..+..+
T Consensus 112 a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 112 AVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666665
No 428
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=42.90 E-value=3.1e+02 Score=26.28 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 230 LTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
...=+...|.+|++|++.|.....
T Consensus 185 F~~vLNeKK~KIR~lq~~L~~~~~ 208 (342)
T PF06632_consen 185 FVLVLNEKKAKIRELQRLLASAKE 208 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhc
Confidence 333345566666666666655553
No 429
>PRK14127 cell division protein GpsB; Provisional
Probab=42.13 E-value=1.1e+02 Score=24.38 Aligned_cols=10 Identities=50% Similarity=0.531 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q psy5721 230 LTQENESAKE 239 (290)
Q Consensus 230 lq~E~~~~~~ 239 (290)
|+.++..+++
T Consensus 49 Lk~e~~~l~~ 58 (109)
T PRK14127 49 LQQENARLKA 58 (109)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 430
>KOG2077|consensus
Probab=41.63 E-value=2e+02 Score=29.65 Aligned_cols=23 Identities=35% Similarity=0.476 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 226 EMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~L 248 (290)
+|.+.-++-.++++++-+|+.+.
T Consensus 400 EMaRVLMeRNqYKErLMELqEav 422 (832)
T KOG2077|consen 400 EMARVLMERNQYKERLMELQEAV 422 (832)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 55566667778888888877643
No 431
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=41.58 E-value=2.8e+02 Score=25.34 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccC
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~ 263 (290)
-.+.+-.+..+||+....+.+++..|.++++.-..-+.+++=+-+
T Consensus 215 ~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l~~~Dm~G~~~ 259 (289)
T COG4985 215 FQQHYVAEKSELQKRLAQLQTELDALRAELERQFLYLVDMQGETV 259 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceEEEEccCCCEe
Confidence 344566677788888888888888888887776666666654433
No 432
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=41.44 E-value=2.2e+02 Score=24.18 Aligned_cols=84 Identities=23% Similarity=0.294 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA--------RRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~--------~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.+...+...|.+-..++...-..+.+|...-..-...+... +.++...-++...+|.++...+++-+.|...
T Consensus 27 ~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~r 106 (159)
T PF05384_consen 27 QEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRER 106 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555565555655555555555555443333333222 3444455556666777777777766666666
Q ss_pred HhHHHhhhhhhh
Q psy5721 248 LEEPTRTLLNFF 259 (290)
Q Consensus 248 LeE~~~~l~~~~ 259 (290)
-+++...|..+.
T Consensus 107 RD~LErrl~~l~ 118 (159)
T PF05384_consen 107 RDELERRLRNLE 118 (159)
T ss_pred HHHHHHHHHHHH
Confidence 666665555544
No 433
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=41.01 E-value=1.7e+02 Score=22.81 Aligned_cols=37 Identities=11% Similarity=0.210 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
..+...+..+......++.....+...+.++..+|-+
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~ 106 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLREQLKELQEKIQE 106 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555443
No 434
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=40.92 E-value=2.7e+02 Score=25.22 Aligned_cols=39 Identities=13% Similarity=0.129 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcch
Q psy5721 230 LTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLL 269 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~ 269 (290)
.+.+++.++..++..+.+++.+...+..+ ..-+|-.|..
T Consensus 107 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~-~i~AP~~G~V 145 (322)
T TIGR01730 107 AKAAVEAAQADLEAAKASLASAQLNLRYT-EIRAPFDGTI 145 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-EEECCCCcEE
Confidence 33334444444444444555554444443 3444444433
No 435
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=40.78 E-value=2.8e+02 Score=25.10 Aligned_cols=19 Identities=26% Similarity=0.344 Sum_probs=10.0
Q ss_pred HHHHHHHHhHHHhhhhhhh
Q psy5721 241 VKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 241 ~kel~q~LeE~~~~l~~~~ 259 (290)
..++..+|.|....|-++.
T Consensus 122 ~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 122 SEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554
No 436
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=40.63 E-value=1.4e+02 Score=21.57 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy5721 225 GEMTRLTQENESAKE 239 (290)
Q Consensus 225 ~el~~lq~E~~~~~~ 239 (290)
.++..++.++..++.
T Consensus 61 ~kl~~yr~~l~~lk~ 75 (79)
T PF05008_consen 61 SKLRSYRSELKKLKK 75 (79)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 437
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=40.40 E-value=2.6e+02 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
|+.+-..+-..+-........|++++.++..
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444444333
No 438
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=40.32 E-value=1.1e+02 Score=25.31 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
......++.-..+|+.+++.||.+|..+...+..+.......++.+
T Consensus 86 qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekrl 131 (131)
T PF04859_consen 86 QSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKRL 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 439
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=40.32 E-value=3.7e+02 Score=26.40 Aligned_cols=108 Identities=13% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------HHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE------------------------------------QIMEQEEL 212 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~------------------------------------ql~~qee~ 212 (290)
..+..+......+.+++...+.++........-+++ .+.+.+..
T Consensus 165 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (457)
T TIGR01000 165 TQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQ 244 (457)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 213 ITTARRDYEQLQGEMT---------------------------RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~---------------------------~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
+..++.++..++.++. ....+++..+.++..++..+......+....=.+.-.
T Consensus 245 i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~l~~~~I~AP~d 324 (457)
T TIGR01000 245 IDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKEDSQKGVIKAPED 324 (457)
T ss_pred HHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEECCCC
Q ss_pred Ccchhhhhhcc
Q psy5721 266 GTLLYNHYLLG 276 (290)
Q Consensus 266 ~~~~~~~~~~~ 276 (290)
|.+...+...|
T Consensus 325 G~V~~~~~~~G 335 (457)
T TIGR01000 325 GVLHLNPETKG 335 (457)
T ss_pred eEEEecccCCC
No 440
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=40.19 E-value=2.1e+02 Score=23.58 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQ 195 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~ 195 (290)
....++.....|-..|-.+.+.|..+
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~L 88 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYL 88 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666443
No 441
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.17 E-value=3.7e+02 Score=26.36 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=4.3
Q ss_pred HHHHHHHhHHH
Q psy5721 242 KEVLQALEEPT 252 (290)
Q Consensus 242 kel~q~LeE~~ 252 (290)
+++...+|--.
T Consensus 301 Rdi~E~~Es~q 311 (395)
T PF10267_consen 301 RDIWEVMESCQ 311 (395)
T ss_pred hHHHHHHHHHH
Confidence 33333443333
No 442
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=40.14 E-value=2.6e+02 Score=24.66 Aligned_cols=53 Identities=26% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE---QIMEQEELITTARRDYEQL 223 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~---ql~~qee~~~~~~~e~~~l 223 (290)
...|...+..|+.+|-+++.++..+.+.+..++. .-..++..+..++.++...
T Consensus 42 ~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~Le~e~~~~ 97 (206)
T PF14988_consen 42 VSRYAKQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQTLEEELEKM 97 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888777766655543 2233444444444444433
No 443
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=40.04 E-value=24 Score=23.51 Aligned_cols=16 Identities=13% Similarity=0.285 Sum_probs=13.3
Q ss_pred hhHhHHHHHHHHHHcC
Q psy5721 4 FACGALRNVISALADG 19 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~~ 19 (290)
-|||+||+|+.-+-+.
T Consensus 7 LsLMvLGN~vTniln~ 22 (44)
T PF07208_consen 7 LSLMVLGNMVTNILNT 22 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhh
Confidence 4899999999887753
No 444
>KOG1899|consensus
Probab=39.80 E-value=2.7e+02 Score=29.13 Aligned_cols=30 Identities=17% Similarity=0.225 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
+.+.++..|+.++.|+....--++|+.+++
T Consensus 235 stk~e~a~L~Eq~~eK~~e~~rl~~~lv~~ 264 (861)
T KOG1899|consen 235 STKGEMAPLREQRSEKNDEEMRLLRTLVQR 264 (861)
T ss_pred cccchhhhHHHHHhhhhhHHHHHHHHHHHH
Confidence 344566667777777777666666666554
No 445
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=39.47 E-value=2.1e+02 Score=27.85 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 223 LQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.+.++..++.+++++..++.++++-+.+
T Consensus 271 ~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 271 KKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666666655554433
No 446
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=39.44 E-value=2.6e+02 Score=24.40 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
...+...+..+......|...+..++.++.+++...+.+
T Consensus 100 ~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 100 AERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444444444444443333
No 447
>KOG3856|consensus
Probab=39.39 E-value=39 Score=27.61 Aligned_cols=45 Identities=29% Similarity=0.381 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhcc------CCCCcchhhhhhccCCC
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLNFFRQS------SPKGTLLYNHYLLGWPN 279 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~~~~~~------~~~~~~~~~~~~~~~~~ 279 (290)
+..+.|++++-+.-.|+..+|++++||- =-..|-+|+|..-||-.
T Consensus 13 e~~kaEL~elikkrqe~eetl~nLe~qIY~~EgsYle~ts~~gniirG~e~ 63 (135)
T KOG3856|consen 13 EDTKAELAELIKKRQELEETLANLERQIYAFEGSYLEDTSNNGNIIRGWER 63 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhh
Confidence 3445555555555566666666666652 23456789999999963
No 448
>KOG4593|consensus
Probab=39.15 E-value=4.9e+02 Score=27.46 Aligned_cols=27 Identities=37% Similarity=0.441 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
|+++....+++--++++++...+-...
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q~~ 264 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQLR 264 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666667777777777776665544
No 449
>PLN02320 seryl-tRNA synthetase
Probab=39.09 E-value=2.5e+02 Score=28.45 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
..+...+.+++..+..++..+++++.++..
T Consensus 136 ~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 136 VEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555444
No 450
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=38.94 E-value=2.5e+02 Score=25.56 Aligned_cols=62 Identities=13% Similarity=0.107 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+|+.......+-.+++...+.+.++.++.+..-++....-..|...+++..++++......+
T Consensus 114 kI~g~rKtA~~~~rKl~~ke~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaE 175 (265)
T PF06409_consen 114 KINGKRKTAKKHLRKLSMKECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAE 175 (265)
T ss_pred HHhhHHHhhHHHHHHHHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444333223333333333333344444444444445555555555555554444333
No 451
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=38.75 E-value=1.5e+02 Score=21.57 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
..+...++.++..++.+++.++.++..+
T Consensus 30 ~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 30 NNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 452
>KOG0018|consensus
Probab=38.67 E-value=3.5e+02 Score=29.96 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
-++..+.++++..+.+.++|+...++...
T Consensus 725 p~i~~i~r~l~~~e~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 725 PEISEIKRKLQNREGEMKELEERMNKVED 753 (1141)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666555555443
No 453
>KOG4787|consensus
Probab=38.67 E-value=3e+02 Score=28.54 Aligned_cols=43 Identities=19% Similarity=0.067 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 216 ARRDYEQLQGEM-------TRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 216 ~~~e~~~l~~el-------~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
....+.+|+.++ .+|+.|++...-..+++.+.++++.+.+..-
T Consensus 499 d~~kIK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~~~~t 548 (852)
T KOG4787|consen 499 DELKIKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAVETQT 548 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHHhhhH
Confidence 334444555443 3788899999989999999999988777654
No 454
>PLN03188 kinesin-12 family protein; Provisional
Probab=38.45 E-value=6.4e+02 Score=28.64 Aligned_cols=39 Identities=28% Similarity=0.423 Sum_probs=26.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ 204 (290)
.++.+|+-|.++...|+.||.+--+.+..--..+.+|++
T Consensus 1170 ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~e 1208 (1320)
T PLN03188 1170 EREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKE 1208 (1320)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 456677777888888888887776666555555555553
No 455
>KOG4196|consensus
Probab=38.41 E-value=1.4e+02 Score=24.66 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
...+..+++.|.+++.+++.|+++++.....+.
T Consensus 83 k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 83 KAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666666554444
No 456
>KOG4343|consensus
Probab=38.11 E-value=2e+02 Score=29.40 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh--hccCCC
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF--RQSSPK 265 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~--~~~~~~ 265 (290)
.|+..+..+-.|++.++.|+.-|.++|+++.. +.+ ++.||+
T Consensus 306 ~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~---En~~~kvpsp~ 348 (655)
T KOG4343|consen 306 GLEARLQALLSENEQLKKENATLKRQLDELVS---ENQRLKVPSPK 348 (655)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh---cCcccccCCCc
Confidence 44555555666666666666666666666654 333 566666
No 457
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=37.94 E-value=2.8e+02 Score=26.56 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 228 TRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
..++.++...+..+..+...|..+......+
T Consensus 118 ~~l~~~~~~k~~~L~~l~~~L~~l~~a~~pl 148 (355)
T PF09766_consen 118 KKLQQENKKKKKFLDSLPPQLKSLKKAAKPL 148 (355)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3333344444444444444444333333333
No 458
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=37.94 E-value=2.7e+02 Score=24.19 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=0.0
Q ss_pred hhhhccccccccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCC
Q psy5721 67 FGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPE 146 (290)
Q Consensus 67 fa~rak~i~~~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 146 (290)
|+..+..+.+....-.++++ .+...+..+..|...+..+..-+..+.....-.................++..
T Consensus 5 ~~~~~~s~~~~~~~~~e~D~-----~F~~~~~~~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~-- 77 (236)
T PF09325_consen 5 FGKLFDSVSNSSPKMKEPDE-----WFEEIKDYVDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEE-- 77 (236)
T ss_pred HHHHHHHHHccCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCC--
Q ss_pred CCCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Q psy5721 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYA----------EKLKEQIMEQEELITTA 216 (290)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~----------~klk~ql~~qee~~~~~ 216 (290)
......+.........+..............|...|.+.-.-+...+..+ +.+...+...+.....+
T Consensus 78 ---~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~kl 154 (236)
T PF09325_consen 78 ---KSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIESVKEALNRRDKKLIEYQNAEKELQKKKAQLEKL 154 (236)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
......-..++..+..++..++..+..+....+.....+..
T Consensus 155 ~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~~~is~~~k~ 195 (236)
T PF09325_consen 155 KASGKNRQDKVEQAENEIEEAERRVEQAKDEFEEISENIKK 195 (236)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 459
>KOG3091|consensus
Probab=37.58 E-value=2.5e+02 Score=28.30 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
++|..++.---+++..-...|+.....+.+|+..-.+---++...++....|...+.++....+.++..=--|.-.-|++
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~EE~L 416 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDEEEL 416 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccHHHH
Q ss_pred HhhhhhhhhccC
Q psy5721 252 TRTLLNFFRQSS 263 (290)
Q Consensus 252 ~~~l~~~~~~~~ 263 (290)
...|+.+.+++.
T Consensus 417 r~Kldtll~~ln 428 (508)
T KOG3091|consen 417 RAKLDTLLAQLN 428 (508)
T ss_pred HHHHHHHHHHhc
No 460
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=37.40 E-value=1.5e+02 Score=21.00 Aligned_cols=52 Identities=25% Similarity=0.391 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQEN--------------ESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~--------------~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+.+..+..+.++...++.++..++..+ +.-+....++..+++.+...|-.+.
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 461
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=37.28 E-value=3.3e+02 Score=25.01 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG-----------------EMTRL 230 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~-----------------el~~l 230 (290)
.......+.....+..++...+..+.+....+...+.++...+..+...+.+.++++. .....
T Consensus 79 ~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a~~~~~~a 158 (334)
T TIGR00998 79 ELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHARKALLSA 158 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH-------------------HHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhcc
Q psy5721 231 TQENESAKE-------------------EVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLG 276 (290)
Q Consensus 231 q~E~~~~~~-------------------e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~ 276 (290)
+.++++++. .++..+.+++.....+....=.+.-.|.+...|.-.|
T Consensus 159 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G 223 (334)
T TIGR00998 159 KAALNAAIQEQLNANQALVRGTPLKKQPAVQEAKERLKTAWLALKRTVIRAPFDGYVARRFVQVG 223 (334)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhhCcEEEcCCCcEEEEEecCCC
No 462
>PRK11519 tyrosine kinase; Provisional
Probab=37.04 E-value=5.2e+02 Score=27.16 Aligned_cols=125 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHH
Q psy5721 96 EKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLE 175 (290)
Q Consensus 96 ~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~ 175 (290)
..+.+..++.++...+..+..++....+....... ...-.....++
T Consensus 272 L~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea----------------------------------~~~l~~~~~l~ 317 (719)
T PRK11519 272 LAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEA----------------------------------KAVLDSMVNID 317 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHH----------------------------------HHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQ---LQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~---l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+...+..++.+.......-.-.+..++.+....+..++.++.+... .+.++.+|+++.+..++-...+.+..+|..
T Consensus 318 ~ql~~l~~~~~~l~~~y~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 318 AQLNELTFKEAEISKLYTKEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred hh
Q psy5721 253 RT 254 (290)
Q Consensus 253 ~~ 254 (290)
..
T Consensus 398 i~ 399 (719)
T PRK11519 398 IT 399 (719)
T ss_pred HH
No 463
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=37.03 E-value=2.4e+02 Score=23.33 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
....+...++.....+......|..+...+..+.......+..-..+..........+..-+.+++.++.|+..+..
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~ 96 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRR 96 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHH
No 464
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.93 E-value=4.2e+02 Score=26.02 Aligned_cols=155 Identities=14% Similarity=0.162 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchh--------hhcccCCcccccCCCCCCCCCCCCCCCC
Q psy5721 84 LTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDE--------QVNLADPVDMAASIAPTPESAPASILPA 155 (290)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (290)
+++......+......+..++.++..|+.++.....+...-... ............
T Consensus 90 ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~~~~~~~f~~~~~~~~~~~~~~~~~q~~~~~---------------- 153 (457)
T TIGR01000 90 YDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSIENGRNQFPTDDSFGYRNLFNGYLAQVESLT---------------- 153 (457)
T ss_pred ECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCcchhHHHHHHHHHHHHHHHH----------------
Q ss_pred CCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q psy5721 156 IPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE------------------------ 211 (290)
Q Consensus 156 ~~~~~~~~~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee------------------------ 211 (290)
......+..+..+.+.+..++...+..+......+..++....-.++
T Consensus 154 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (457)
T TIGR01000 154 ---------SETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGTKVANFNPYQSLYENYQAQLKSA 224 (457)
T ss_pred ---------HHHhhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHhh
Q ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHhHHH
Q psy5721 212 ------------LITTARRDYEQLQGEMTRLTQENE---------------------------SAKEEVKEVLQALEEPT 252 (290)
Q Consensus 212 ------------~~~~~~~e~~~l~~el~~lq~E~~---------------------------~~~~e~kel~q~LeE~~ 252 (290)
....+..++..++.++..++.+.. ...+++.+...++.++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~ 304 (457)
T TIGR01000 225 SDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELE 304 (457)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhccC
Q psy5721 253 RTLLNFFRQSS 263 (290)
Q Consensus 253 ~~l~~~~~~~~ 263 (290)
..+.....+..
T Consensus 305 ~~l~~a~~~l~ 315 (457)
T TIGR01000 305 SKIKSLKEDSQ 315 (457)
T ss_pred HHHHHHHHHHh
No 465
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.91 E-value=4e+02 Score=25.77 Aligned_cols=94 Identities=20% Similarity=0.304 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT------------------ 228 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~------------------ 228 (290)
....+.....-...|.+-+.+-....++++..+.+..+++..++..+..++..+.....-+.
T Consensus 235 ~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElc 314 (384)
T PF03148_consen 235 ANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELC 314 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHH
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 229 ------RLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 229 ------~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
.|..|+..+.+-+..|++.|.+....+-.+.+
T Consensus 315 rD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~ 352 (384)
T PF03148_consen 315 RDPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLER 352 (384)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 466
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=36.89 E-value=74 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+..++.|+..++.+++.++.+|++.+..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 467
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=36.44 E-value=2.8e+02 Score=23.88 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCC
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~ 265 (290)
+.++.|-..-......+..+ ...+....++..|..+..++...++.+...|.+....|.....+..++
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~ 69 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEK 69 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 468
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=36.32 E-value=1.5e+02 Score=24.27 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchhhhhhccCCC
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPN 279 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 279 (290)
+.|+..+..|++.+......+..+..++..++.-.......+.++.+...++...++..-+... +.-..|.|-
T Consensus 33 ~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~e-------ilr~~g~~l 105 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQE-------ILRNRGYAL 105 (141)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcCCCC
Q ss_pred cccchhhcccC
Q psy5721 280 QSERVSLWYRL 290 (290)
Q Consensus 280 ~~~~~~~~~~~ 290 (290)
+.+--.|+-+|
T Consensus 106 ~~eEe~L~~~l 116 (141)
T PF13874_consen 106 SPEEEELRKRL 116 (141)
T ss_dssp -----------
T ss_pred CHHHHHHHHHH
No 469
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=36.31 E-value=2.9e+02 Score=23.98 Aligned_cols=95 Identities=18% Similarity=0.161 Sum_probs=0.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 164 GSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 164 ~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
..++..+|+.+...++.+.. +.-..+.=|-+-=.++.-..-.+..+..++..--..-..+++++++....
T Consensus 72 A~~T~~ERR~~~~~l~~y~~----------~~P~~vRPL~QlWRe~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~ 141 (179)
T PF13942_consen 72 AEPTPAERRQMVDRLNSYSL----------QFPASVRPLLQLWREQQVLQLQLSEERARYQRLQQSSDSELDALRQQQQR 141 (179)
T ss_pred CCCCHHHHHHHHHHHHHhhh----------hcCHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHhhhhhhh---hccCCCCcc
Q psy5721 244 VLQALEEPTRTLLNFF---RQSSPKGTL 268 (290)
Q Consensus 244 l~q~LeE~~~~l~~~~---~~~~~~~~~ 268 (290)
|+.+|+.-...|.++- ||.|+.|..
T Consensus 142 Lq~qL~~T~RKLEnLTDIERQLSSRK~~ 169 (179)
T PF13942_consen 142 LQYQLDTTTRKLENLTDIERQLSSRKQA 169 (179)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhccCCC
No 470
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=36.21 E-value=1.6e+02 Score=20.89 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 187 EKDEEINQQSQYAEKLKEQIMEQEELI--------------TTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 187 ekd~ei~~~~~~~~klk~ql~~qee~~--------------~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
+.+.++..+...+.++..++......+ ..-+.....++.++..+...+..++
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 471
>KOG0962|consensus
Probab=36.14 E-value=6.6e+02 Score=28.58 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE---QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~---ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
.++..+.++...++..+.....+.......+.++.. ........+.........+++++..++.+......++++++
T Consensus 826 ~Ek~~~~~~~~~~rke~E~~~k~~~~~~~~i~~l~~~~~e~k~~~~~~~~~l~~~~qle~~~~~l~e~~~~~~s~~~e~~ 905 (1294)
T KOG0962|consen 826 KEKSKKQESLDKLRKEIECLQKEVIEQEREISRLINLRNELKEEKQKIERSLARLQQLEEDIEELSEEITRLDSKVKELL 905 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Q ss_pred HHHhHHHhhhhhhh
Q psy5721 246 QALEEPTRTLLNFF 259 (290)
Q Consensus 246 q~LeE~~~~l~~~~ 259 (290)
....-+...+-+++
T Consensus 906 ~~~~~~~~~l~e~~ 919 (1294)
T KOG0962|consen 906 ERIQPLKVELEEAQ 919 (1294)
T ss_pred hhhcchhhhHHHHH
No 472
>KOG2391|consensus
Probab=36.03 E-value=3.7e+02 Score=25.85 Aligned_cols=65 Identities=9% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 195 QSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 195 ~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
...+..+.++++..+....+++.+.-+.+.+-...|.++.++++++..+|+...+=++.-..+.+
T Consensus 216 ~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal 280 (365)
T KOG2391|consen 216 REKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREAL 280 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
No 473
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=35.76 E-value=1.5e+02 Score=23.64 Aligned_cols=43 Identities=26% Similarity=0.378 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
+.|-..+...++.+..+..+.+.++..+.....++..++.|.|
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~k 118 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKESK 118 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 474
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=35.71 E-value=6.1e+02 Score=27.62 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhchhhcCCCCcceEEEeeCCCCCChHhhhhhh-----hhhhhccccccccccCccCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 33 RILQESLGGNARTTIIICCSPASFNESETKSTL-----DFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKL 107 (290)
Q Consensus 33 ~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL-----~fa~rak~i~~~~~~n~~~~~~~~~~~~~~~~~~~~~l~~~i 107 (290)
.+|+-.|+-...+.+++-+.|++....++..++ --|..+..-.+..-.-.-.....++.-..+.+..+..+...+
T Consensus 494 ~if~~~fa~~~~vfl~a~i~sssr~v~~~k~~~~~i~~~~a~l~~~de~~~l~~dl~~~~r~rq~~~~~r~~ld~leaa~ 573 (984)
T COG4717 494 LIFQIIFAVAQIVFLSAEIKSSSRAVREEKAAVTDIPEELARLLITDELPELAVDLLVQSRIRQHWQQLRKALDQLEAAY 573 (984)
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHhcccCCCChHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHH
Q psy5721 108 EKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDE 187 (290)
Q Consensus 108 ~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~e~~~~L~~~L~e 187 (290)
+.|+..+..+.++......+|...-... .++.+.-......+-...+.+.+
T Consensus 574 e~lE~r~~~~e~~~~e~~se~e~~l~~l-----------------------------~l~~el~~~~~~d~ls~mkd~~~ 624 (984)
T COG4717 574 EALEGRFAAAEAAMAEWQSEWEEALDEL-----------------------------GLSRELSPEQQLDILSTMKDLKK 624 (984)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHhc-----------------------------cCCccCCcHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q psy5721 188 KDEEINQQSQYAEKLKEQIMEQEELI--------------------TTARRDYEQLQGEMTR-LTQENESAKEEVKEVLQ 246 (290)
Q Consensus 188 kd~ei~~~~~~~~klk~ql~~qee~~--------------------~~~~~e~~~l~~el~~-lq~E~~~~~~e~kel~q 246 (290)
+.+.+..+...+..|+++....++.. .......+...++-.. ++......++-+-+|.+
T Consensus 625 ~~q~~~EL~~q~~~L~ee~~af~~~v~~l~~~~e~~~~~ls~~~~~~r~~~~~e~~~Ee~r~~le~~~~~t~El~~~L~a 704 (984)
T COG4717 625 LMQKKAELTHQVARLREEQAAFEERVEGLLAVLEAQFIDLSTLFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRA 704 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhHHHHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHH
Q ss_pred HHhHHHhhhhhhh
Q psy5721 247 ALEEPTRTLLNFF 259 (290)
Q Consensus 247 ~LeE~~~~l~~~~ 259 (290)
+++.-...+..++
T Consensus 705 e~~~~~kei~dLf 717 (984)
T COG4717 705 ELELHRKEILDLF 717 (984)
T ss_pred HHHHHHHHHHHHH
No 475
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=35.59 E-value=2.5e+02 Score=22.97 Aligned_cols=92 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 163 ~~~~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
...++..+...+..--..+..-+...+. +..+...++.+..+....-+..-+.+.++..+..++.....++..++.+..
T Consensus 1 L~~lS~~eL~~Ll~d~~~l~~~v~~l~~-~~~~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~ 79 (150)
T PF07200_consen 1 LQDLSTEELQELLSDEEKLDAFVKSLPQ-VQELQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQ 79 (150)
T ss_dssp GGS-TTHHHHHHHHH-HHHHHHGGGGS---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHcCHHHHHHHHHcCHH-HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhHHHhhh
Q psy5721 243 EVLQALEEPTRTL 255 (290)
Q Consensus 243 el~q~LeE~~~~l 255 (290)
.+.++++++....
T Consensus 80 ~k~~~~~~l~~~~ 92 (150)
T PF07200_consen 80 EKEQQQDELSSNY 92 (150)
T ss_dssp HHHHHHHHHHHCH
T ss_pred HHHHHHHHHHccC
No 476
>KOG3119|consensus
Probab=35.46 E-value=2.7e+02 Score=25.56 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
...++-+.-....+......+........++..|..||++++.++..|++++..+...+...
T Consensus 194 ~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 194 EYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 477
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.85 E-value=3.9e+02 Score=27.56 Aligned_cols=77 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE-------LITTARRDYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee-------~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
...+.+....++..+...+++|..++..+..+..++.+-.- .+..+..+...++.++..+..+-+.+.+++.+
T Consensus 551 ~~~~~~~~~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~ 630 (638)
T PRK10636 551 EAELRTQTQPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQ 630 (638)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q psy5721 244 VLQA 247 (290)
Q Consensus 244 l~q~ 247 (290)
+..+
T Consensus 631 ~~~~ 634 (638)
T PRK10636 631 MLLE 634 (638)
T ss_pred Hhhh
No 478
>PRK14127 cell division protein GpsB; Provisional
Probab=34.84 E-value=2.1e+02 Score=22.81 Aligned_cols=42 Identities=31% Similarity=0.499 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 207 MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 207 ~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.+-..-+.....+++.+..++..|+.++..+++++.+++..+
T Consensus 26 ~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 26 DEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 479
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=34.82 E-value=3e+02 Score=23.72 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
+.-.+.++++.+.+..++++.+..++.....+..++ |.....++.++...++.|+..+.++...+
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYq--ll~hr~e~ee~~~~l~~le~~~~~~e~~~ 148 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQ--LLQHRREMEEMLERLQKLEARLKKLEPIY 148 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH--HHHhHHHHHHHHHHHHHHHHHHHHHHhhc
No 480
>KOG3990|consensus
Probab=34.79 E-value=2.7e+02 Score=25.64 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHhhhhhhhhccCCCC
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE-VKEVLQALEEPTRTLLNFFRQSSPKG 266 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e-~kel~q~LeE~~~~l~~~~~~~~~~~ 266 (290)
.|..+..++..|+.-|-+....+-+..+.+..|..+ ...+.+++..-.+ +..|+.+.++.-..+-.|-..-|+.+
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~~lk~~a~l~~sKsSnk 301 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEESLKAIAQLRNSKSSNK 301 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
No 481
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=2.8e+02 Score=23.27 Aligned_cols=88 Identities=16% Similarity=0.266 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI---------------------------------------- 206 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql---------------------------------------- 206 (290)
...+.+++......+..+++....+|..+...+.++..-+
T Consensus 4 ~~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iG 83 (145)
T COG1730 4 TQQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIG 83 (145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 207 ------MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 207 ------~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
.+.++.+..+.+..+.+...+..++..++.+.+....+.+++.++...
T Consensus 84 sg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~ 137 (145)
T COG1730 84 SGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQK 137 (145)
T ss_pred CceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 482
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=34.65 E-value=2.1e+02 Score=21.87 Aligned_cols=98 Identities=15% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH--------HHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA-RRDYEQLQGEMTRLTQEN--------ESAKEEV 241 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~-~~e~~~l~~el~~lq~E~--------~~~~~e~ 241 (290)
+..+......+..........+..+...+..++......+..+... ..-...++..-..+-.++ ..+....
T Consensus 2 k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~ 81 (127)
T smart00502 2 REALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQL 81 (127)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHHhhhhhhhhccCCCCcc
Q psy5721 242 KEVLQALEEPTRTLLNFFRQSSPKGTL 268 (290)
Q Consensus 242 kel~q~LeE~~~~l~~~~~~~~~~~~~ 268 (290)
..+...+..+...+...++....+.++
T Consensus 82 ~~l~~~l~~l~~~~~~~e~~l~~~~~~ 108 (127)
T smart00502 82 ESLTQKQEKLSHAINFTEEALNSGDPT 108 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCh
No 483
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=34.64 E-value=4.5e+02 Score=28.33 Aligned_cols=71 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 189 DEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 189 d~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.+.|+.-...++++--.+++|.............-+........|.++++..+.+++|+|+-..-..+.+|
T Consensus 347 QEKI~RYQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQALD~QQTRAlQYQ 417 (1480)
T COG3096 347 QEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQALDVQQTRAIQYQ 417 (1480)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
No 484
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=34.45 E-value=4e+02 Score=25.05 Aligned_cols=96 Identities=18% Similarity=0.253 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
+.+....+..+...+-......+.++.........+..+.......+..+.....+|+.=...||.+|..++++...+..
T Consensus 20 ~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 20 PEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHhhhhhhhhcc
Q psy5721 247 ALEEPTRTLLNFFRQS 262 (290)
Q Consensus 247 ~LeE~~~~l~~~~~~~ 262 (290)
+.+++...+.+-+..+
T Consensus 100 eee~kR~el~~kFq~~ 115 (309)
T PF09728_consen 100 EEEEKRKELSEKFQAT 115 (309)
T ss_pred HHHHHHHHHHHHHHHH
No 485
>PRK11546 zraP zinc resistance protein; Provisional
Probab=34.44 E-value=2.8e+02 Score=23.24 Aligned_cols=72 Identities=8% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
++...++...++...+...+++.+-.-+.+|...-..-..-.+.+..+..|+..|+.++...+-+...-..+
T Consensus 47 EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 47 EQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 486
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.42 E-value=2e+02 Score=22.89 Aligned_cols=43 Identities=30% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY 220 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~ 220 (290)
.+.|...+...++++......+++++..+..+.+++..+.++.
T Consensus 75 q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 75 QEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 487
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=2.8e+02 Score=23.24 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE--------------------------------- 221 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~--------------------------------- 221 (290)
..+..+|-.+++..+.+|..+.+.+..+...+.+.+..+..++.-..
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 222 ------QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 222 ------~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
...+-+..+....+.++.....++++|.++...+..+...
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~ 130 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQE 130 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 488
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=34.08 E-value=5.7e+02 Score=26.79 Aligned_cols=140 Identities=9% Similarity=0.095 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccc
Q psy5721 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSL 166 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (290)
+...+..+=....+..++.++...+.++..++....+...+... +
T Consensus 190 ~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~-----------------------------------~ 234 (754)
T TIGR01005 190 ESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNAT-----------------------------------L 234 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcc-----------------------------------c
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQS-----------------------QYAEKLKEQIMEQEELITTARRDYEQL 223 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~-----------------------~~~~klk~ql~~qee~~~~~~~e~~~l 223 (290)
.......+..+....+.++...+......+ ..+..++.++.+.+..+..+......-
T Consensus 235 ~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~ 314 (754)
T TIGR01005 235 ATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQAELRATIADLSTTMLAN 314 (754)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q ss_pred HHHHHHHHHHHHHHHHHHH----------------------HHHHHHhHHHhhhhhhhhc
Q psy5721 224 QGEMTRLTQENESAKEEVK----------------------EVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~k----------------------el~q~LeE~~~~l~~~~~~ 261 (290)
.-++..++.+++.++..+. .|..++.+++..+..+...
T Consensus 315 hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~ 374 (754)
T TIGR01005 315 HPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQ 374 (754)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHh
No 489
>KOG2077|consensus
Probab=33.98 E-value=4.3e+02 Score=27.42 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ--- 246 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q--- 246 (290)
+..+|.+-.+.|.---.+.=....++.-+..=|+.++..-+..-..+++.+..+++++.++.+++..++++-++-..
T Consensus 309 ENsqLLetKNALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddi 388 (832)
T KOG2077|consen 309 ENSQLLETKNALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDI 388 (832)
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q ss_pred -HHhHHHhhhhhhhhcc
Q psy5721 247 -ALEEPTRTLLNFFRQS 262 (290)
Q Consensus 247 -~LeE~~~~l~~~~~~~ 262 (290)
.-..+...-.+|+|+.
T Consensus 389 PmAqRkRFTRvEMaRVL 405 (832)
T KOG2077|consen 389 PMAQRKRFTRVEMARVL 405 (832)
T ss_pred cHHHHhhhHHHHHHHHH
No 490
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=33.88 E-value=3.7e+02 Score=30.04 Aligned_cols=85 Identities=20% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+..++..|+.++.....+..+.....+...+++...+.....++.++..++.++..++++........++-..+....+.
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAETSQERKQKRKEITDQAA 226 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q ss_pred hhhhh
Q psy5721 254 TLLNF 258 (290)
Q Consensus 254 ~l~~~ 258 (290)
.-+++
T Consensus 227 ~~~~~ 231 (1123)
T PRK11448 227 KRLEL 231 (1123)
T ss_pred ccccC
No 491
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=33.49 E-value=4.4e+02 Score=25.27 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 193 NQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 193 ~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
......+.-+-..+.........+.+++++|+.+..++..+++.+-....+++.+|-.+=..+++
T Consensus 126 e~i~el~d~~l~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLN 190 (342)
T PF06632_consen 126 EVIRELFDWCLDANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLN 190 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG0614|consensus
Probab=33.22 E-value=2.7e+02 Score=28.68 Aligned_cols=76 Identities=22% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.++..+..|...+..+++++.++...+..+.+++-.++..++.+.++..++..
T Consensus 20 ~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~~ltnel~k~r~-------------------------- 73 (732)
T KOG0614|consen 20 RELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIAKLTNELDKLRS-------------------------- 73 (732)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhc--------------------------
Q ss_pred HhhhhhhhhccCCCCcchhhhhhccCCCcccc
Q psy5721 252 TRTLLNFFRQSSPKGTLLYNHYLLGWPNQSER 283 (290)
Q Consensus 252 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (290)
-+|-+.+--.|.--|-|-++.+
T Consensus 74 ----------~~p~~~~~~~~l~p~tpl~~~~ 95 (732)
T KOG0614|consen 74 ----------VLPQKAQSAASLGPGTPLASPR 95 (732)
T ss_pred ----------CCcccccCccccCCCCCCCCCc
No 493
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=32.99 E-value=14 Score=37.02 Aligned_cols=134 Identities=13% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhcccCCcccccCCCCCCCCCCCCCCCCCCCcccccccccHHH
Q psy5721 91 RRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEE 170 (290)
Q Consensus 91 ~~~~~~~~~~~~l~~~i~~L~~el~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 170 (290)
+.+.+....++.|.++|..|++.|......-..++......+.... ++..+-
T Consensus 362 ~~~~~~~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~----------------------------Kll~qy 413 (495)
T PF12004_consen 362 KEYRESMKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQ----------------------------KLLLQY 413 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----------------------------HHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
...+++-.++|+++-.+||..+.....-+-...+++..-..+....-...+++ ++.-...+.++..-+..|..+|..
T Consensus 414 q~RLedSE~RLr~QQ~eKd~qmksII~RL~~vEeELrre~~~m~~~~~~kqri---i~aQ~~~i~~Ldaan~Rl~sal~~ 490 (495)
T PF12004_consen 414 QARLEDSEERLRRQQEEKDSQMKSIISRLMAVEEELRREHAEMQAVLDHKQRI---IDAQEKRIAALDAANSRLMSALTQ 490 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhhhhhHHHHHHHhhhhHHHHHHHHhhhhhhhhhhhhhHHHHhcccccchHH---HHHhhhhccccccccccccccccc
Q ss_pred HHhhh
Q psy5721 251 PTRTL 255 (290)
Q Consensus 251 ~~~~l 255 (290)
++..+
T Consensus 491 lk~ry 495 (495)
T PF12004_consen 491 LKERY 495 (495)
T ss_dssp -----
T ss_pred cccCC
No 494
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=32.97 E-value=1.3e+02 Score=23.94 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.+...++.++..|+.||.-++-++.-|.+.|-|.++
T Consensus 72 ~e~~rlkkk~~~LeEENNlLklKievLLDMLtetta 107 (108)
T cd07429 72 REVLRLKKKNQQLEEENNLLKLKIEVLLDMLAETTA 107 (108)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 495
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=32.79 E-value=15 Score=38.58 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQ---QSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~---~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+.+++....+.+.....++++.. ....++.+++++.+.+..+.......+.++.++..++.++.++..+...+..+.
T Consensus 335 k~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~ 414 (713)
T PF05622_consen 335 KELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEER 414 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHhhhhhh
Q psy5721 249 EEPTRTLLNF 258 (290)
Q Consensus 249 eE~~~~l~~~ 258 (290)
+.+...+.++
T Consensus 415 ~~L~e~~eeL 424 (713)
T PF05622_consen 415 DSLRETNEEL 424 (713)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
No 496
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=32.41 E-value=4.9e+02 Score=25.50 Aligned_cols=84 Identities=17% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN---------------ESAKEEVKE 243 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~---------------~~~~~e~ke 243 (290)
.+.....+.....|...-.+..+|+.+-.+.+..+....+.-++...+-..-.+++ .+++.+...
T Consensus 281 tKveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~ 360 (442)
T PF06637_consen 281 TKVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDS 360 (442)
T ss_pred HHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhHHHhhhhhhhhcc
Q psy5721 244 VLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 244 l~q~LeE~~~~l~~~~~~~ 262 (290)
|..+|++++..+-.+..|+
T Consensus 361 L~keLeekkreleql~~q~ 379 (442)
T PF06637_consen 361 LAKELEEKKRELEQLKMQL 379 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 497
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=32.40 E-value=4.1e+02 Score=24.58 Aligned_cols=92 Identities=18% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH----HHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE---------MTRLTQENESAKE----EVKE 243 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~e---------l~~lq~E~~~~~~----e~ke 243 (290)
..+.+....+++|..|....+.++. ..+.+-...++..+..++.++..+ ...+-.|+++... +.+-
T Consensus 142 ~~~~~~~~~~ekd~~i~~~~~~~e~-d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~e~~~r~~~lr~~~~~ 220 (264)
T PF07246_consen 142 DYEELKKEAEEKDQLIKEKTQEREN-DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKILHEELEARESGLRNESKW 220 (264)
T ss_pred cHHHHHHHHHHHHHHHHHHhhchhh-hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHHHHHHHHhHhhhHHHHHH
Q ss_pred HHHHHhHHHhhhhhhhhccCCCCcch
Q psy5721 244 VLQALEEPTRTLLNFFRQSSPKGTLL 269 (290)
Q Consensus 244 l~q~LeE~~~~l~~~~~~~~~~~~~~ 269 (290)
|..++.+.+....-++...+...+.+
T Consensus 221 l~~el~~aK~~~~~~~~~~~~~~sv~ 246 (264)
T PF07246_consen 221 LEHELSDAKEDMIRLRNDISDFTSVP 246 (264)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhHH
No 498
>KOG2307|consensus
Probab=32.37 E-value=4.1e+02 Score=27.44 Aligned_cols=97 Identities=23% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 180 RLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 180 ~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.|...|...|+.++..++-+.++++++......+.......+..-.+....+....-+..-+. +-...+.+...|....
T Consensus 79 nLStnLVgld~aln~i~qpL~qlreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~-v~~~ieKL~k~L~s~p 157 (705)
T KOG2307|consen 79 NLSTNLVGLDDALNKIEQPLNQLREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIY-VLVAIEKLSKMLLSPP 157 (705)
T ss_pred hhhhhhccHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCc
Q ss_pred hccCCCCcchhhhhhccCCCcccchhhcc
Q psy5721 260 RQSSPKGTLLYNHYLLGWPNQSERVSLWY 288 (290)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (290)
+.-+|-|+.+ -||+.+|.
T Consensus 158 sk~q~~~a~s-----------LERiAlel 175 (705)
T KOG2307|consen 158 SKEQQDGATS-----------LERIALEL 175 (705)
T ss_pred ccccccccch-----------HHHHHHHH
No 499
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.26 E-value=5.3e+02 Score=25.89 Aligned_cols=69 Identities=12% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
++...|+.++.+.|.-+..++.++...+.+|...-..+..++.+-..+..++..-+.-.+.+..-+.++
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i 82 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDI 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 500
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=31.78 E-value=48 Score=34.79 Aligned_cols=96 Identities=28% Similarity=0.379 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+......+...+.+...++.........+...+.............+..+.+++..|+.++..++.++..|.+++..+
T Consensus 450 ~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~L 529 (722)
T PF05557_consen 450 QLVDEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEEL 529 (722)
T ss_dssp --------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhh--hhhccCCCCc
Q psy5721 252 TRTLLN--FFRQSSPKGT 267 (290)
Q Consensus 252 ~~~l~~--~~~~~~~~~~ 267 (290)
...|.. ++-...|++|
T Consensus 530 e~~l~~~~L~g~~~~~~t 547 (722)
T PF05557_consen 530 ESELEKLTLQGEFNPSKT 547 (722)
T ss_dssp HHHHHHHCCCT--BTTTE
T ss_pred HHHHHHhhhccccCCCCc
Done!