Query psy5721
Match_columns 290
No_of_seqs 212 out of 1516
Neff 7.0
Searched_HMMs 29240
Date Sat Aug 17 00:55:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5721.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5721hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kin_B Kinesin heavy chain; mo 100.0 5.5E-37 1.9E-41 246.6 10.9 117 3-119 1-117 (117)
2 2kin_B Kinesin; motor protein, 100.0 4.5E-35 1.6E-39 228.5 5.5 97 1-97 3-99 (100)
3 2y65_A Kinesin, kinesin heavy 100.0 1.3E-30 4.5E-35 246.8 5.5 105 1-105 260-364 (365)
4 3cob_A Kinesin heavy chain-lik 99.9 6.4E-28 2.2E-32 228.6 5.7 83 1-84 255-337 (369)
5 3b6u_A Kinesin-like protein KI 99.9 1.1E-27 3.8E-32 227.1 5.7 86 1-86 280-365 (372)
6 3bfn_A Kinesin-like protein KI 99.9 1.7E-27 5.9E-32 226.7 5.7 88 1-89 275-362 (388)
7 1goj_A Kinesin, kinesin heavy 99.9 2.8E-27 9.7E-32 223.3 6.3 87 1-87 257-343 (355)
8 1x88_A Kinesin-like protein KI 99.9 4.2E-27 1.4E-31 222.5 6.5 81 1-82 278-358 (359)
9 2vvg_A Kinesin-2; motor protei 99.9 4.7E-27 1.6E-31 221.4 6.3 84 1-85 263-346 (350)
10 2wbe_C Bipolar kinesin KRP-130 99.9 3.1E-27 1E-31 224.4 4.8 84 1-85 289-372 (373)
11 1t5c_A CENP-E protein, centrom 99.9 2.8E-26 9.4E-31 216.1 6.9 84 1-86 256-340 (349)
12 1ry6_A Internal kinesin; kines 99.9 2.8E-26 9.5E-31 216.8 5.2 83 1-84 259-341 (360)
13 3nwn_A Kinesin-like protein KI 99.9 3.6E-26 1.2E-30 216.0 5.6 74 1-74 286-359 (359)
14 2zfi_A Kinesin-like protein KI 99.9 2.8E-26 9.4E-31 217.4 4.2 83 1-83 270-363 (366)
15 1bg2_A Kinesin; motor protein, 99.9 1.2E-25 4.1E-30 209.9 6.1 73 1-74 253-325 (325)
16 2owm_A Nckin3-434, related to 99.9 1.1E-25 3.9E-30 217.8 6.0 80 1-82 321-421 (443)
17 2nr8_A Kinesin-like protein KI 99.9 1.2E-25 4.1E-30 212.4 5.6 74 1-74 285-358 (358)
18 1f9v_A Kinesin-like protein KA 99.9 1.6E-25 5.6E-30 210.7 5.2 79 1-79 266-346 (347)
19 3t0q_A AGR253WP; kinesin, alph 99.9 2.8E-25 9.4E-30 209.4 5.2 78 1-78 269-348 (349)
20 3lre_A Kinesin-like protein KI 99.9 2.3E-25 7.9E-30 210.3 4.6 74 1-74 280-355 (355)
21 2h58_A Kinesin-like protein KI 99.9 3E-25 1E-29 207.7 4.9 74 1-75 256-329 (330)
22 2rep_A Kinesin-like protein KI 99.9 3.9E-25 1.3E-29 210.0 5.6 73 1-74 304-376 (376)
23 3dc4_A Kinesin-like protein NO 99.9 4.7E-25 1.6E-29 207.3 5.5 77 1-78 263-339 (344)
24 4etp_A Kinesin-like protein KA 99.9 5E-25 1.7E-29 211.2 5.6 79 1-79 322-402 (403)
25 3u06_A Protein claret segregat 99.9 5.5E-25 1.9E-29 211.3 5.3 76 1-77 310-385 (412)
26 2heh_A KIF2C protein; kinesin, 99.9 5.6E-25 1.9E-29 209.3 5.1 76 1-77 309-385 (387)
27 4a14_A Kinesin, kinesin-like p 99.9 1E-24 3.6E-29 205.1 5.5 72 1-72 271-344 (344)
28 1v8k_A Kinesin-like protein KI 99.9 7.3E-25 2.5E-29 209.8 4.2 78 1-79 329-407 (410)
29 3gbj_A KIF13B protein; kinesin 99.9 1E-24 3.5E-29 205.8 4.6 73 1-73 272-349 (354)
30 4h1g_A Maltose binding protein 99.9 3.3E-24 1.1E-28 219.0 5.4 75 1-75 638-712 (715)
31 3oja_B Anopheles plasmodium-re 96.7 0.064 2.2E-06 52.6 17.6 79 172-250 505-583 (597)
32 2v71_A Nuclear distribution pr 96.2 0.5 1.7E-05 40.1 19.0 77 184-260 89-165 (189)
33 3hnw_A Uncharacterized protein 95.5 0.26 8.8E-06 39.8 12.1 40 211-250 96-135 (138)
34 4h22_A Leucine-rich repeat fli 95.3 0.16 5.4E-06 38.9 9.6 81 175-255 8-88 (103)
35 1c1g_A Tropomyosin; contractIl 95.2 1.3 4.3E-05 37.5 18.4 11 100-110 15-25 (284)
36 3hnw_A Uncharacterized protein 95.1 0.28 9.7E-06 39.6 11.3 65 171-235 70-134 (138)
37 2fxo_A Myosin heavy chain, car 95.0 1 3.4E-05 35.7 14.5 85 170-254 42-126 (129)
38 2v71_A Nuclear distribution pr 94.8 1.2 4.1E-05 37.8 14.7 79 173-254 46-124 (189)
39 3mq7_A Bone marrow stromal ant 94.6 1.2 4.2E-05 34.6 13.1 86 176-264 32-117 (121)
40 3u1c_A Tropomyosin alpha-1 cha 94.0 1.5 5.2E-05 33.3 14.6 66 173-238 6-71 (101)
41 3oja_B Anopheles plasmodium-re 94.0 0.9 3.1E-05 44.3 14.1 39 221-259 540-578 (597)
42 2dfs_A Myosin-5A; myosin-V, in 93.9 0.39 1.3E-05 51.0 12.1 57 196-252 983-1043(1080)
43 3na7_A HP0958; flagellar bioge 93.9 1 3.5E-05 39.7 13.0 7 106-112 19-25 (256)
44 2eqb_B RAB guanine nucleotide 93.7 1.5 5E-05 33.2 11.6 50 172-221 8-57 (97)
45 3a7p_A Autophagy protein 16; c 93.7 1.4 4.8E-05 35.9 12.4 64 191-254 69-132 (152)
46 3o0z_A RHO-associated protein 93.7 0.73 2.5E-05 38.3 10.8 73 176-248 6-78 (168)
47 3na7_A HP0958; flagellar bioge 93.5 2.5 8.5E-05 37.2 15.0 42 172-213 93-134 (256)
48 1ic2_A Tropomyosin alpha chain 93.5 1.6 5.4E-05 31.7 12.2 57 199-255 22-78 (81)
49 2v66_B Nuclear distribution pr 93.3 2.2 7.6E-05 33.0 17.5 74 184-257 36-109 (111)
50 2jee_A YIIU; FTSZ, septum, coi 93.2 1.8 6.2E-05 31.6 11.7 51 198-248 28-78 (81)
51 3i00_A HIP-I, huntingtin-inter 93.1 1.1 3.9E-05 35.2 10.7 70 186-258 11-80 (120)
52 2dfs_A Myosin-5A; myosin-V, in 93.1 1.4 4.7E-05 46.9 14.5 66 184-252 985-1050(1080)
53 2v4h_A NF-kappa-B essential mo 92.7 2.7 9.1E-05 32.4 13.1 35 170-204 25-59 (110)
54 4emc_A Monopolin complex subun 92.6 0.55 1.9E-05 39.7 8.6 96 184-279 14-124 (190)
55 3nmd_A CGMP dependent protein 92.0 0.63 2.2E-05 33.3 7.0 44 178-221 21-64 (72)
56 2eqb_B RAB guanine nucleotide 91.9 0.96 3.3E-05 34.2 8.3 59 176-234 5-63 (97)
57 2jee_A YIIU; FTSZ, septum, coi 91.2 3.3 0.00011 30.2 11.8 66 185-250 8-73 (81)
58 1i84_S Smooth muscle myosin he 91.2 1.5 5.2E-05 46.9 12.2 15 42-56 675-689 (1184)
59 3oja_A Leucine-rich immune mol 90.9 1.6 5.6E-05 41.5 11.2 49 212-260 429-477 (487)
60 3vkg_A Dynein heavy chain, cyt 90.5 2.4 8E-05 49.9 13.6 15 43-57 1776-1790(3245)
61 3u1c_A Tropomyosin alpha-1 cha 90.3 4.7 0.00016 30.4 13.1 41 210-250 36-76 (101)
62 2q6q_A Spindle POLE BODY compo 90.0 2.1 7.1E-05 30.1 7.9 55 177-231 4-58 (74)
63 3jsv_C NF-kappa-B essential mo 89.6 5.2 0.00018 30.0 11.0 73 179-251 5-80 (94)
64 2e7s_A RAB guanine nucleotide 89.6 1.2 4E-05 35.8 7.4 90 181-270 30-134 (135)
65 2v66_B Nuclear distribution pr 89.6 5.9 0.0002 30.6 11.1 32 221-252 38-69 (111)
66 2fxo_A Myosin heavy chain, car 89.5 6.6 0.00022 30.9 15.1 47 214-260 79-125 (129)
67 3oja_A Leucine-rich immune mol 89.1 2.8 9.5E-05 39.9 11.2 43 213-255 423-465 (487)
68 3u59_A Tropomyosin beta chain; 89.1 5.8 0.0002 29.8 14.6 33 219-251 45-77 (101)
69 1ic2_A Tropomyosin alpha chain 88.3 5.6 0.00019 28.7 12.2 65 176-240 6-70 (81)
70 2zqm_A Prefoldin beta subunit 88.1 7.1 0.00024 29.6 11.1 90 172-261 9-113 (117)
71 3cvf_A Homer-3, homer protein 87.5 3 0.0001 30.3 7.7 46 207-252 16-61 (79)
72 2ocy_A RAB guanine nucleotide 86.9 11 0.00038 30.8 11.7 42 218-259 108-149 (154)
73 3a7p_A Autophagy protein 16; c 86.9 11 0.00039 30.6 13.7 52 192-243 77-128 (152)
74 3o0z_A RHO-associated protein 86.8 12 0.00042 30.9 14.8 83 167-249 60-153 (168)
75 3u59_A Tropomyosin beta chain; 86.5 8.6 0.0003 28.9 13.6 28 207-234 40-67 (101)
76 2v4h_A NF-kappa-B essential mo 86.2 9.9 0.00034 29.2 11.8 35 177-211 25-59 (110)
77 2efr_A General control protein 86.1 13 0.00043 30.4 13.8 50 172-221 73-122 (155)
78 3a7o_A Autophagy protein 16; c 86.0 7.2 0.00025 27.5 9.0 22 176-197 18-39 (75)
79 3q8t_A Beclin-1; autophagy, AT 85.7 9.3 0.00032 28.6 14.5 37 170-206 12-48 (96)
80 3nmd_A CGMP dependent protein 85.5 3.6 0.00012 29.3 7.1 17 230-246 45-61 (72)
81 3cve_A Homer protein homolog 1 85.2 8.2 0.00028 27.5 9.5 54 205-258 8-61 (72)
82 3ol1_A Vimentin; structural ge 84.6 12 0.00042 29.0 13.9 24 173-196 17-40 (119)
83 1l8d_A DNA double-strand break 84.4 11 0.00038 28.3 11.8 37 220-256 66-102 (112)
84 3tnu_B Keratin, type II cytosk 84.2 13 0.00045 29.0 12.6 64 175-241 35-98 (129)
85 3tnu_A Keratin, type I cytoske 83.9 14 0.00047 29.0 11.2 39 175-213 37-75 (131)
86 3q8t_A Beclin-1; autophagy, AT 82.7 13 0.00044 27.8 15.1 87 172-258 7-93 (96)
87 2oqq_A Transcription factor HY 82.6 6.1 0.00021 25.0 6.4 35 208-242 7-41 (42)
88 4gkw_A Spindle assembly abnorm 82.1 17 0.00059 28.8 13.6 64 172-235 14-77 (167)
89 1t6f_A Geminin; coiled-coil, c 82.0 3.6 0.00012 25.1 5.0 28 176-203 7-34 (37)
90 3qh9_A Liprin-beta-2; coiled-c 81.9 12 0.00043 27.0 10.8 19 228-246 57-75 (81)
91 3vkg_A Dynein heavy chain, cyt 80.3 1E+02 0.0035 36.6 20.1 82 171-252 2016-2097(3245)
92 3bas_A Myosin heavy chain, str 80.1 15 0.00052 26.9 11.6 21 167-187 12-32 (89)
93 3bas_A Myosin heavy chain, str 79.9 15 0.00053 26.8 12.5 42 185-226 16-57 (89)
94 3ghg_A Fibrinogen alpha chain; 79.8 22 0.00077 34.5 12.3 22 168-189 56-77 (562)
95 2ocy_A RAB guanine nucleotide 79.1 24 0.00084 28.7 13.2 32 233-264 109-140 (154)
96 2zxx_A Geminin; coiled-coil, c 79.1 15 0.00051 26.6 8.4 39 214-252 30-68 (79)
97 3m91_A Proteasome-associated A 79.0 9.3 0.00032 25.3 6.8 37 215-251 13-49 (51)
98 1go4_E MAD1 (mitotic arrest de 78.5 14 0.00046 28.0 8.4 22 223-244 73-94 (100)
99 2xdj_A Uncharacterized protein 77.3 18 0.00063 26.3 10.3 36 214-249 30-65 (83)
100 3tnu_B Keratin, type II cytosk 77.1 19 0.00064 28.1 9.4 36 168-203 35-70 (129)
101 2yy0_A C-MYC-binding protein; 76.9 5 0.00017 26.8 5.0 27 228-254 22-48 (53)
102 3cvf_A Homer-3, homer protein 76.8 19 0.00064 26.1 9.6 49 202-250 25-73 (79)
103 1ci6_A Transcription factor AT 76.7 11 0.00038 25.8 7.0 18 217-234 36-53 (63)
104 1ci6_A Transcription factor AT 76.2 9.2 0.00032 26.3 6.5 35 222-256 27-61 (63)
105 2k48_A Nucleoprotein; viral pr 76.1 23 0.0008 26.9 9.4 24 229-252 79-102 (107)
106 1m1j_B Fibrinogen beta chain; 75.8 57 0.002 31.2 14.5 29 226-254 169-197 (464)
107 2zqm_A Prefoldin beta subunit 75.4 23 0.0008 26.5 10.4 82 171-252 15-111 (117)
108 1wle_A Seryl-tRNA synthetase; 74.8 28 0.00096 33.6 11.8 94 171-267 72-165 (501)
109 3tnu_A Keratin, type I cytoske 74.7 17 0.00058 28.5 8.6 12 176-187 45-56 (131)
110 4gkw_A Spindle assembly abnorm 74.5 20 0.00069 28.4 8.7 18 240-257 99-116 (167)
111 3qh9_A Liprin-beta-2; coiled-c 74.3 22 0.00076 25.7 10.8 23 235-257 50-72 (81)
112 1fxk_A Prefoldin; archaeal pro 74.3 24 0.00081 26.1 11.1 39 210-248 64-102 (107)
113 3swk_A Vimentin; cytoskeleton, 73.8 23 0.0008 25.8 10.8 17 190-206 21-37 (86)
114 3mq9_A Bone marrow stromal ant 73.2 40 0.0014 31.5 12.4 30 229-258 440-469 (471)
115 1gd2_E Transcription factor PA 72.6 8 0.00027 27.3 5.4 16 232-247 50-65 (70)
116 2efr_A General control protein 72.6 37 0.0013 27.6 15.2 62 197-258 77-138 (155)
117 1t2k_D Cyclic-AMP-dependent tr 72.0 13 0.00045 25.1 6.4 33 222-254 26-58 (61)
118 1go4_E MAD1 (mitotic arrest de 71.7 27 0.00092 26.4 8.5 23 236-258 72-94 (100)
119 3efg_A Protein SLYX homolog; x 71.7 17 0.00059 26.0 7.2 26 224-249 34-59 (78)
120 3qne_A Seryl-tRNA synthetase, 71.4 23 0.00079 34.1 10.2 82 174-266 38-119 (485)
121 2wt7_A Proto-oncogene protein 70.7 22 0.00076 24.2 7.5 12 230-241 42-53 (63)
122 1gd2_E Transcription factor PA 70.0 21 0.00072 25.1 7.2 22 215-236 47-68 (70)
123 3lss_A Seryl-tRNA synthetase; 69.9 32 0.0011 33.1 10.8 96 172-267 40-153 (484)
124 4etp_A Kinesin-like protein KA 69.9 9.2 0.00031 35.9 6.9 62 202-263 8-69 (403)
125 3vp9_A General transcriptional 69.7 8.1 0.00028 28.8 5.1 60 176-238 28-88 (92)
126 2wt7_A Proto-oncogene protein 69.4 18 0.00061 24.7 6.6 35 220-254 25-59 (63)
127 1l8d_A DNA double-strand break 69.4 33 0.0011 25.6 12.6 38 212-249 65-102 (112)
128 2yy0_A C-MYC-binding protein; 69.3 10 0.00036 25.2 5.2 32 218-249 19-50 (53)
129 3ghg_A Fibrinogen alpha chain; 68.8 89 0.003 30.4 13.5 30 85-117 47-76 (562)
130 2dq0_A Seryl-tRNA synthetase; 68.6 28 0.00096 33.2 10.1 84 173-267 35-118 (455)
131 1hjb_A Ccaat/enhancer binding 68.5 19 0.00063 26.5 6.9 34 224-257 42-75 (87)
132 4dk0_A Putative MACA; alpha-ha 68.1 35 0.0012 30.6 10.3 57 219-276 116-173 (369)
133 1deq_A Fibrinogen (alpha chain 68.1 70 0.0024 29.7 12.1 30 87-119 52-81 (390)
134 4emc_A Monopolin complex subun 68.0 53 0.0018 27.5 10.5 47 168-214 19-65 (190)
135 3fpp_A Macrolide-specific effl 67.3 20 0.00067 32.0 8.4 84 175-258 68-154 (341)
136 3swy_A Cyclic nucleotide-gated 67.0 23 0.00078 22.9 7.5 42 208-249 2-43 (46)
137 3etw_A Adhesin A; antiparallel 66.3 44 0.0015 26.0 11.1 87 186-272 23-115 (119)
138 3jsv_C NF-kappa-B essential mo 66.0 39 0.0013 25.2 9.2 45 200-244 43-87 (94)
139 1m1j_B Fibrinogen beta chain; 65.7 96 0.0033 29.6 14.6 57 176-232 100-156 (464)
140 1ses_A Seryl-tRNA synthetase; 65.3 24 0.00081 33.3 8.8 82 173-267 32-113 (421)
141 2e7s_A RAB guanine nucleotide 64.8 6.3 0.00022 31.5 3.9 39 218-256 46-84 (135)
142 3swf_A CGMP-gated cation chann 64.5 36 0.0012 24.3 7.9 51 208-258 4-54 (74)
143 3iox_A AGI/II, PA; alpha helix 64.4 1E+02 0.0036 29.6 14.6 38 216-253 71-108 (497)
144 1zxa_A CGMP-dependent protein 64.0 12 0.00043 26.1 4.9 32 175-206 24-55 (67)
145 2w6a_A ARF GTPase-activating p 64.0 31 0.0011 23.4 8.5 26 212-237 35-60 (63)
146 4fla_A Regulation of nuclear P 63.3 58 0.002 26.3 11.9 37 188-224 91-127 (152)
147 3swk_A Vimentin; cytoskeleton, 63.2 40 0.0014 24.5 11.1 74 179-252 3-76 (86)
148 2b9c_A Striated-muscle alpha t 62.7 58 0.002 26.1 13.9 79 181-259 43-121 (147)
149 3vp9_A General transcriptional 62.1 46 0.0016 24.7 8.5 17 235-251 71-87 (92)
150 3m9b_A Proteasome-associated A 62.0 3.5 0.00012 36.4 2.1 35 217-251 60-94 (251)
151 1jnm_A Proto-oncogene C-JUN; B 61.9 13 0.00045 25.2 4.7 31 216-246 27-57 (62)
152 1gu4_A CAAT/enhancer binding p 60.9 27 0.00093 25.1 6.4 31 225-255 43-73 (78)
153 2zxx_A Geminin; coiled-coil, c 57.9 48 0.0016 23.9 7.2 29 176-204 34-62 (79)
154 4fla_A Regulation of nuclear P 57.9 73 0.0025 25.7 13.0 65 194-258 83-147 (152)
155 4fi5_A Nucleoprotein; structur 57.5 62 0.0021 24.8 9.0 25 229-253 66-90 (113)
156 1wle_A Seryl-tRNA synthetase; 57.4 89 0.003 30.1 11.4 33 226-258 117-149 (501)
157 1t6f_A Geminin; coiled-coil, c 57.2 23 0.00078 21.6 4.5 22 200-221 10-31 (37)
158 3s4r_A Vimentin; alpha-helix, 57.1 55 0.0019 24.1 13.0 23 172-194 19-41 (93)
159 1uii_A Geminin; human, DNA rep 56.8 54 0.0018 23.8 9.0 25 218-242 46-70 (83)
160 3mq9_A Bone marrow stromal ant 55.7 1.3E+02 0.0044 27.9 14.3 15 51-65 280-294 (471)
161 3u06_A Protein claret segregat 55.6 23 0.00079 33.3 6.8 62 202-263 8-69 (412)
162 2ic6_A Nucleocapsid protein; h 54.7 56 0.0019 23.4 9.2 67 185-253 7-73 (78)
163 1vcs_A Vesicle transport throu 54.6 24 0.00081 26.5 5.5 19 237-255 72-90 (102)
164 3ol1_A Vimentin; structural ge 53.9 72 0.0025 24.4 14.5 80 166-245 17-103 (119)
165 3iv1_A Tumor susceptibility ge 53.8 59 0.002 23.3 10.1 19 181-199 16-34 (78)
166 2wvr_A Geminin; DNA replicatio 53.7 73 0.0025 27.0 8.8 43 199-241 117-159 (209)
167 2i1j_A Moesin; FERM, coiled-co 53.7 12 0.0004 36.9 4.5 27 236-262 437-463 (575)
168 3cve_A Homer protein homolog 1 52.9 58 0.002 23.0 11.1 48 202-249 19-66 (72)
169 3htk_A Structural maintenance 52.9 47 0.0016 21.9 9.1 25 220-244 28-52 (60)
170 3a7o_A Autophagy protein 16; c 52.6 58 0.002 22.9 9.0 25 219-243 47-71 (75)
171 3i00_A HIP-I, huntingtin-inter 52.2 80 0.0027 24.4 11.7 65 168-235 14-78 (120)
172 2ic9_A Nucleocapsid protein; h 52.0 71 0.0024 23.8 9.0 66 186-253 8-73 (96)
173 1a93_B MAX protein, coiled coi 51.5 28 0.00096 21.0 4.2 25 218-242 7-31 (34)
174 1nlw_A MAD protein, MAX dimeri 51.4 44 0.0015 23.9 6.3 18 231-248 60-77 (80)
175 2w6a_A ARF GTPase-activating p 49.9 58 0.002 22.1 8.3 37 206-242 22-58 (63)
176 2z5i_A TM, general control pro 49.6 47 0.0016 21.8 5.7 36 216-251 10-45 (52)
177 1dh3_A Transcription factor CR 49.5 15 0.00052 24.5 3.2 26 222-247 26-51 (55)
178 1nkp_B MAX protein, MYC proto- 49.5 41 0.0014 23.9 5.9 19 230-248 59-77 (83)
179 3he5_A Synzip1; heterodimeric 49.4 46 0.0016 20.8 7.7 42 186-227 6-47 (49)
180 3ra3_B P2F; coiled coil domain 49.2 24 0.0008 19.7 3.4 23 95-117 4-26 (28)
181 2wt7_B Transcription factor MA 47.9 51 0.0017 24.3 6.1 15 165-179 17-31 (90)
182 3mud_A DNA repair protein XRCC 47.8 72 0.0025 26.4 7.7 9 106-114 69-77 (175)
183 3s9g_A Protein hexim1; cyclin 47.2 88 0.003 23.4 9.8 24 219-242 66-89 (104)
184 2lw1_A ABC transporter ATP-bin 46.8 79 0.0027 22.8 8.0 20 187-206 26-45 (89)
185 2l5g_B Putative uncharacterize 46.2 53 0.0018 20.7 5.7 30 181-210 7-36 (42)
186 3mq7_A Bone marrow stromal ant 46.2 1E+02 0.0034 23.8 14.0 78 179-259 28-105 (121)
187 1nkp_A C-MYC, MYC proto-oncoge 46.0 77 0.0026 22.9 7.0 15 235-249 69-83 (88)
188 4dzn_A Coiled-coil peptide CC- 45.9 34 0.0012 19.8 3.8 25 95-119 6-30 (33)
189 2i1j_A Moesin; FERM, coiled-co 45.2 44 0.0015 32.8 7.1 56 197-252 405-460 (575)
190 3qne_A Seryl-tRNA synthetase, 45.2 92 0.0031 29.9 9.2 73 185-261 35-107 (485)
191 1lwu_C Fibrinogen gamma chain; 44.8 78 0.0027 28.8 8.2 19 234-252 35-53 (323)
192 3m9b_A Proteasome-associated A 44.3 28 0.00097 30.6 5.0 52 219-270 55-106 (251)
193 3iv1_A Tumor susceptibility ge 44.3 85 0.0029 22.5 9.8 25 227-251 48-72 (78)
194 2dq0_A Seryl-tRNA synthetase; 44.1 1.1E+02 0.0039 28.9 9.7 34 226-259 70-103 (455)
195 2wvr_A Geminin; DNA replicatio 43.4 1.5E+02 0.005 25.1 9.0 37 175-211 114-150 (209)
196 3c9i_A Tail needle protein GP2 43.3 1.5E+02 0.0053 25.2 12.1 74 186-259 73-146 (242)
197 1d7m_A Cortexillin I; coiled-c 43.0 98 0.0033 22.8 10.3 7 238-244 45-51 (101)
198 2y3a_B Phosphatidylinositol 3- 42.7 1.6E+02 0.0056 26.2 10.0 40 172-211 35-74 (302)
199 3ni0_A Bone marrow stromal ant 42.7 1E+02 0.0035 22.9 11.2 30 177-206 26-55 (99)
200 1ykh_B RNA polymerase II holoe 42.5 1.1E+02 0.0038 23.8 7.9 23 172-194 53-75 (132)
201 1m1j_C Fibrinogen gamma chain; 42.5 2.2E+02 0.0074 26.7 14.7 28 225-252 105-132 (409)
202 2no2_A HIP-I, huntingtin-inter 42.2 1.1E+02 0.0037 23.1 14.8 42 212-253 55-96 (107)
203 2dq3_A Seryl-tRNA synthetase; 42.2 28 0.00095 32.8 5.0 84 173-267 34-117 (425)
204 4dk0_A Putative MACA; alpha-ha 41.8 1.6E+02 0.0053 26.2 10.0 34 217-250 121-154 (369)
205 1deq_A Fibrinogen (alpha chain 41.8 2.2E+02 0.0074 26.5 12.6 17 172-188 63-79 (390)
206 3hhm_B NISH2 P85alpha; PI3KCA, 41.2 2.2E+02 0.0074 26.2 14.8 88 173-260 144-254 (373)
207 2no2_A HIP-I, huntingtin-inter 40.7 1.2E+02 0.0039 23.0 13.9 31 219-249 69-99 (107)
208 1ses_A Seryl-tRNA synthetase; 40.3 99 0.0034 28.9 8.5 35 225-259 64-98 (421)
209 2wt7_B Transcription factor MA 39.8 1.1E+02 0.0038 22.5 11.1 34 222-255 52-85 (90)
210 1f5n_A Interferon-induced guan 39.7 2.8E+02 0.0096 27.1 13.4 15 249-263 570-584 (592)
211 3k29_A Putative uncharacterize 39.1 1.6E+02 0.0055 24.1 13.6 11 253-263 152-162 (169)
212 1fxk_A Prefoldin; archaeal pro 38.9 1.1E+02 0.0038 22.2 11.3 41 218-258 65-105 (107)
213 3ra3_A P1C; coiled coil domain 38.5 20 0.0007 20.0 2.0 22 229-250 4-25 (28)
214 1gmj_A ATPase inhibitor; coile 38.3 1.1E+02 0.0039 22.2 7.1 46 166-211 34-79 (84)
215 2xnx_M M protein, M1-BC1; cell 37.8 1.4E+02 0.0049 23.8 7.7 32 218-249 73-104 (146)
216 4h22_A Leucine-rich repeat fli 37.6 1.3E+02 0.0044 22.7 11.2 57 178-234 25-81 (103)
217 1m1j_C Fibrinogen gamma chain; 37.3 2.6E+02 0.009 26.1 13.7 44 216-259 89-132 (409)
218 3w03_C DNA repair protein XRCC 37.2 1.1E+02 0.0037 25.5 7.3 21 227-247 161-181 (184)
219 3lay_A Zinc resistance-associa 36.6 1.3E+02 0.0044 24.8 7.7 19 165-183 67-85 (175)
220 1yke_B RNA polymerase II holoe 36.5 1.4E+02 0.0048 23.9 7.7 22 173-194 54-75 (151)
221 3l4q_C Phosphatidylinositol 3- 36.2 1.8E+02 0.0061 23.9 15.2 44 217-260 102-145 (170)
222 1x8y_A Lamin A/C; structural p 35.8 1.2E+02 0.0041 21.8 8.9 30 183-212 28-57 (86)
223 1hjb_A Ccaat/enhancer binding 35.5 1.3E+02 0.0043 21.9 8.9 36 218-253 43-78 (87)
224 2b5u_A Colicin E3; high resolu 34.2 3.3E+02 0.011 26.3 13.3 88 166-261 291-378 (551)
225 2ke4_A CDC42-interacting prote 33.7 1.4E+02 0.0049 22.1 8.3 28 225-252 62-89 (98)
226 3lss_A Seryl-tRNA synthetase; 33.7 2.7E+02 0.0093 26.6 10.5 77 184-260 38-139 (484)
227 4b4t_K 26S protease regulatory 32.9 69 0.0024 30.1 6.1 26 220-245 65-90 (428)
228 3azd_A Short alpha-tropomyosin 32.6 13 0.00043 22.9 0.6 26 222-247 8-33 (37)
229 3fpp_A Macrolide-specific effl 32.5 2.5E+02 0.0086 24.5 10.4 37 226-262 115-151 (341)
230 2l5g_B Putative uncharacterize 31.4 99 0.0034 19.4 4.8 17 231-247 15-31 (42)
231 1f5n_A Interferon-induced guan 31.0 1.1E+02 0.0039 30.0 7.5 19 235-253 522-540 (592)
232 3l4q_C Phosphatidylinositol 3- 30.7 2.2E+02 0.0076 23.3 14.1 33 229-261 100-132 (170)
233 3q0x_A Centriole protein; cent 30.6 1.7E+02 0.006 25.1 7.8 53 168-220 163-215 (228)
234 3t98_B Nucleoporin NUP58/NUP45 30.6 1.6E+02 0.0055 21.6 8.8 27 235-261 61-87 (93)
235 3v86_A De novo design helix; c 30.0 74 0.0025 17.5 3.8 21 96-116 5-25 (27)
236 3s4r_A Vimentin; alpha-helix, 28.5 1.7E+02 0.0059 21.3 13.7 26 224-249 55-80 (93)
237 1gu4_A CAAT/enhancer binding p 28.4 1.6E+02 0.0055 20.9 8.5 27 211-237 43-69 (78)
238 2w83_C C-JUN-amino-terminal ki 27.6 1.7E+02 0.0057 20.9 9.6 33 216-248 42-74 (77)
239 2juz_A UPF0352 protein HI0840; 26.8 37 0.0013 24.4 2.3 17 4-20 32-48 (80)
240 4fi5_A Nucleoprotein; structur 26.3 2.2E+02 0.0074 21.7 10.0 27 233-259 63-89 (113)
241 1p9i_A Cortexillin I/GCN4 hybr 26.1 89 0.0031 17.7 3.4 17 235-251 9-25 (31)
242 2ke4_A CDC42-interacting prote 25.9 2E+02 0.0069 21.2 9.3 69 169-237 15-88 (98)
243 2qyw_A Vesicle transport throu 24.9 2.1E+02 0.0072 21.1 12.0 17 236-252 82-98 (102)
244 1joc_A EEA1, early endosomal a 24.8 1.8E+02 0.0061 22.3 6.3 45 218-262 4-48 (125)
245 2w83_C C-JUN-amino-terminal ki 24.8 1.9E+02 0.0065 20.6 9.7 28 220-247 39-66 (77)
246 2k48_A Nucleoprotein; viral pr 24.7 2.3E+02 0.0077 21.4 10.3 23 165-187 31-53 (107)
247 2oxj_A Hybrid alpha/beta pepti 24.7 1.2E+02 0.0041 18.1 4.4 19 226-244 9-27 (34)
248 1fxk_C Protein (prefoldin); ar 24.5 2.3E+02 0.0079 21.5 12.7 39 214-252 91-129 (133)
249 2jrx_A UPF0352 protein YEJL; h 24.5 36 0.0012 24.6 1.9 16 4-19 32-47 (83)
250 2jpq_A UPF0352 protein VP2129; 24.3 37 0.0013 24.6 1.9 17 4-20 32-48 (83)
251 3vmx_A Voltage-gated hydrogen 24.2 1.5E+02 0.0051 19.2 7.1 28 196-223 10-37 (48)
252 2juw_A UPF0352 protein SO_2176 24.1 37 0.0013 24.4 1.9 16 4-19 32-47 (80)
253 2jr2_A UPF0352 protein CPS_261 23.9 42 0.0014 23.9 2.1 15 4-18 32-46 (76)
254 3s9g_A Protein hexim1; cyclin 23.8 2.3E+02 0.0078 21.2 10.5 20 226-245 66-85 (104)
255 3sjb_C Golgi to ER traffic pro 23.8 2.2E+02 0.0076 21.0 6.9 31 212-242 50-80 (93)
256 2b5u_A Colicin E3; high resolu 23.8 5E+02 0.017 25.0 12.9 27 179-205 317-343 (551)
257 1nlw_A MAD protein, MAX dimeri 23.4 2E+02 0.0067 20.3 5.8 33 173-205 44-76 (80)
258 3a2a_A Voltage-gated hydrogen 23.2 1.7E+02 0.0058 19.5 6.1 16 177-192 26-41 (58)
259 2oa5_A Hypothetical protein BQ 22.8 50 0.0017 25.2 2.5 23 220-242 10-32 (110)
260 2f1m_A Acriflavine resistance 21.7 3.6E+02 0.012 22.6 10.4 37 231-268 104-140 (277)
261 1vcs_A Vesicle transport throu 21.2 2.5E+02 0.0085 20.6 7.8 24 229-252 71-94 (102)
262 1cxz_B Protein (PKN); protein- 20.9 2.5E+02 0.0084 20.4 8.1 28 227-254 58-85 (86)
263 3hhm_B NISH2 P85alpha; PI3KCA, 20.9 4.8E+02 0.017 23.8 15.0 86 178-263 142-243 (373)
264 4b6x_A AVRRPS4, avirulence pro 20.8 2.4E+02 0.0082 20.3 9.0 24 217-240 61-84 (90)
265 1ik9_A DNA repair protein XRCC 20.7 3.8E+02 0.013 22.5 13.1 21 230-250 180-200 (213)
266 3iox_A AGI/II, PA; alpha helix 20.7 5.6E+02 0.019 24.5 16.0 43 218-260 66-108 (497)
267 1cii_A Colicin IA; bacteriocin 20.4 5.7E+02 0.02 24.5 13.1 30 178-207 351-380 (602)
268 3q0x_A Centriole protein; cent 20.2 4.1E+02 0.014 22.7 9.6 42 173-214 175-216 (228)
No 1
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=100.00 E-value=5.5e-37 Score=246.55 Aligned_cols=117 Identities=71% Similarity=1.079 Sum_probs=114.7
Q ss_pred chhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccccCc
Q psy5721 3 IFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNE 82 (290)
Q Consensus 3 N~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~n~ 82 (290)
|+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||+||+.|++.|.+|.
T Consensus 1 N~SL~~Lg~vi~aL~~~~~~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~ 80 (117)
T 3kin_B 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80 (117)
T ss_dssp CCHHHHHHHHHHHHHHSCCSSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCB
T ss_pred CCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecC
Confidence 89999999999999998778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 83 ELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
+++++.|.++|+++.+++..|+..|+.|+.|+.+||+
T Consensus 81 ~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~~~R~ 117 (117)
T 3kin_B 81 ELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999984
No 2
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=100.00 E-value=4.5e-35 Score=228.50 Aligned_cols=97 Identities=73% Similarity=1.058 Sum_probs=92.9
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
+||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||+|+..+++||++||+||.||+.|++.|.+
T Consensus 3 ~IN~SL~~Lg~vI~aL~~~~~~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~~ 82 (100)
T 2kin_B 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSV 82 (100)
T ss_dssp BSSHHHHHHHHHHHHHHHTCCSSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEECC
T ss_pred cchHHHHHHHHHHHHHHhcCCCCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCccee
Confidence 59999999999999999986689999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHH
Q psy5721 81 NEELTAEEWKRRYEKEK 97 (290)
Q Consensus 81 n~~~~~~~~~~~~~~~~ 97 (290)
|.+++++.+.++|+++.
T Consensus 83 n~~~~~~~l~~~~~~e~ 99 (100)
T 2kin_B 83 NLELTAEEWKKKYEKEK 99 (100)
T ss_dssp EEECCHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHhh
Confidence 99999999988887663
No 3
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=99.96 E-value=1.3e-30 Score=246.80 Aligned_cols=105 Identities=87% Similarity=1.191 Sum_probs=89.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||+++++.||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus 260 ~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~~ 339 (365)
T 2y65_A 260 NINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCV 339 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCCHHHHHHHHHHHHHHhcccCccee
Confidence 49999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHHHHHHHHHHHHHHHHHH
Q psy5721 81 NEELTAEEWKRRYEKEKEKSSRYKG 105 (290)
Q Consensus 81 n~~~~~~~~~~~~~~~~~~~~~l~~ 105 (290)
|.+++++.|.++|++++++++.|++
T Consensus 340 n~~~~~~~~~~~~~~e~~~~~~L~~ 364 (365)
T 2y65_A 340 NEELTAEEWKRRYEKEKEKNARLKG 364 (365)
T ss_dssp EEECCSHHHHHC-------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999888777764
No 4
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=99.94 E-value=6.4e-28 Score=228.63 Aligned_cols=83 Identities=42% Similarity=0.591 Sum_probs=80.8
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus 255 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl~TLrfA~rak~i~~~~~~ 333 (369)
T 3cob_A 255 SINKSLSALGDVISALSSGN-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSK 333 (369)
T ss_dssp HHTHHHHHHHHHHHHHHTTC-SCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccCCcc
Confidence 39999999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CccC
Q psy5721 81 NEEL 84 (290)
Q Consensus 81 n~~~ 84 (290)
|...
T Consensus 334 n~~~ 337 (369)
T 3cob_A 334 NVSS 337 (369)
T ss_dssp CEEC
T ss_pred cCCH
Confidence 9986
No 5
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=99.94 E-value=1.1e-27 Score=227.09 Aligned_cols=86 Identities=56% Similarity=0.771 Sum_probs=77.9
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus 280 ~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~ 359 (372)
T 3b6u_A 280 KINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRV 359 (372)
T ss_dssp GCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred hhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEEEEEeCCcccCHHHHHHHHHHHHHHhhcccccee
Confidence 49999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCH
Q psy5721 81 NEELTA 86 (290)
Q Consensus 81 n~~~~~ 86 (290)
|.++..
T Consensus 360 n~~~~~ 365 (372)
T 3b6u_A 360 NEDPKD 365 (372)
T ss_dssp CC----
T ss_pred cCChHH
Confidence 998654
No 6
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=99.94 E-value=1.7e-27 Score=226.72 Aligned_cols=88 Identities=38% Similarity=0.486 Sum_probs=72.6
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus 275 ~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~I~n~p~~ 353 (388)
T 3bfn_A 275 AINTSLFVLGKVVDALNQGL-PRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNFAARSKEVINRPFT 353 (388)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTTTSSSTTCEEEEEEEECCSGGGHHHHHHHHHHHCSEEEEC-----
T ss_pred HhhhhHHHHHHHHHHHhcCC-CCCcCcccHHHHHHHHhhCCCccEEEEEEECCccccHHHHHHHHHHHHHHhhCcCcCcc
Confidence 59999999999999999987 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHHHH
Q psy5721 81 NEELTAEEW 89 (290)
Q Consensus 81 n~~~~~~~~ 89 (290)
|..+++..+
T Consensus 354 n~~~~~~~l 362 (388)
T 3bfn_A 354 NESLQPHAL 362 (388)
T ss_dssp ---------
T ss_pred cCCCCHHHH
Confidence 999887554
No 7
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=99.93 E-value=2.8e-27 Score=223.29 Aligned_cols=87 Identities=62% Similarity=0.878 Sum_probs=83.6
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus 257 ~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~I~n~~~v 336 (355)
T 1goj_A 257 KINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKV 336 (355)
T ss_dssp GGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCC
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHHHHHHHHHHHHHHhhccCCcee
Confidence 49999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCHH
Q psy5721 81 NEELTAE 87 (290)
Q Consensus 81 n~~~~~~ 87 (290)
|.++++.
T Consensus 337 n~~~~~~ 343 (355)
T 1goj_A 337 NAELSPA 343 (355)
T ss_dssp CSSSSCS
T ss_pred CCCCCHH
Confidence 9988763
No 8
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=99.93 E-value=4.2e-27 Score=222.51 Aligned_cols=81 Identities=52% Similarity=0.675 Sum_probs=76.4
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus 278 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~v 356 (359)
T 1x88_A 278 NINQSLLTLGRVITALVERT-PHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEV 356 (359)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC-
T ss_pred hhhHHHHHHHHHHHHHhcCC-CCCccccchHHHHHHHHhCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCccee
Confidence 59999999999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred Cc
Q psy5721 81 NE 82 (290)
Q Consensus 81 n~ 82 (290)
|.
T Consensus 357 n~ 358 (359)
T 1x88_A 357 NQ 358 (359)
T ss_dssp --
T ss_pred CC
Confidence 86
No 9
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=99.93 E-value=4.7e-27 Score=221.37 Aligned_cols=84 Identities=54% Similarity=0.685 Sum_probs=81.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||.+++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|++.|.+
T Consensus 263 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETl~TL~fA~rak~i~n~~~~ 341 (350)
T 2vvg_A 263 KINLSLSALGLVISKLVEGA-THIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRI 341 (350)
T ss_dssp CTTHHHHHHHHHHHHHHHTC-SSCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCC
T ss_pred HHhHHHHHHHHHHHHHHcCC-CCCCccccHHHHHHHHhcCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhcccccee
Confidence 49999999999999999987 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q psy5721 81 NEELT 85 (290)
Q Consensus 81 n~~~~ 85 (290)
|.++.
T Consensus 342 n~~~~ 346 (350)
T 2vvg_A 342 NEDPK 346 (350)
T ss_dssp CBSCT
T ss_pred cCCch
Confidence 99765
No 10
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=99.93 E-value=3.1e-27 Score=224.42 Aligned_cols=84 Identities=49% Similarity=0.647 Sum_probs=80.0
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||.++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.|.+
T Consensus 289 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~v 367 (373)
T 2wbe_C 289 NINQSLLTLGRVITALVDRA-PHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEV 367 (373)
T ss_dssp --CHHHHHHHHHHHHHHHCS-SCCCGGGCHHHHHTHHHHHSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCC
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCccccchHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccccee
Confidence 49999999999999999986 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCC
Q psy5721 81 NEELT 85 (290)
Q Consensus 81 n~~~~ 85 (290)
|..++
T Consensus 368 N~~~s 372 (373)
T 2wbe_C 368 NQKLT 372 (373)
T ss_dssp CEECC
T ss_pred ccccC
Confidence 99865
No 11
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=99.92 E-value=2.8e-26 Score=216.10 Aligned_cols=84 Identities=48% Similarity=0.538 Sum_probs=78.3
Q ss_pred CcchhHhHHHHHHHHHHcCCC-CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNK-THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~-~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
.||+||++||+||.||++++. .||||||||||+||+|+|||||+|+||+||+|+ +++||++||+||.||+.|+|.|.
T Consensus 256 ~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~~~ETlsTL~fA~rak~I~n~~~ 333 (349)
T 1t5c_A 256 NINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPY 333 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--CSHHHHHHHHHHHHHTTCCCCCC
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--CHHHHHHHHHHHHHHhhcccCce
Confidence 599999999999999999763 699999999999999999999999999999997 58999999999999999999999
Q ss_pred cCccCCH
Q psy5721 80 VNEELTA 86 (290)
Q Consensus 80 ~n~~~~~ 86 (290)
+|...++
T Consensus 334 vn~~~~~ 340 (349)
T 1t5c_A 334 VNEVSTD 340 (349)
T ss_dssp CCEEC--
T ss_pred eccCCCC
Confidence 9998765
No 12
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=99.92 E-value=2.8e-26 Score=216.82 Aligned_cols=83 Identities=28% Similarity=0.384 Sum_probs=70.1
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTV 80 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~~ 80 (290)
.||+||++||+||.||..++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+|.+..
T Consensus 259 ~INkSL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~i~n~~~~ 337 (360)
T 1ry6_A 259 NINRSLLALKECIRAMDSDK-NHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLE 337 (360)
T ss_dssp HHHHHHHHHHHHHHHHTTST-TSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCccccCHHHHHHHHHhCCCCeEEEEEEeCCCcccHHHHHHHHHHHHHHhhcccCccc
Confidence 39999999999999999876 89999999999999999999999999999999999999999999999999999996665
Q ss_pred CccC
Q psy5721 81 NEEL 84 (290)
Q Consensus 81 n~~~ 84 (290)
+...
T Consensus 338 ~~~~ 341 (360)
T 1ry6_A 338 GKPI 341 (360)
T ss_dssp ----
T ss_pred CCCC
Confidence 5443
No 13
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.6e-26 Score=216.02 Aligned_cols=74 Identities=34% Similarity=0.465 Sum_probs=67.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 286 ~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~isP~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 286 YINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred hhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHHHcCC
Confidence 59999999999999999987789999999999999999999999999999999999999999999999999976
No 14
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=99.92 E-value=2.8e-26 Score=217.41 Aligned_cols=83 Identities=48% Similarity=0.633 Sum_probs=66.2
Q ss_pred CcchhHhHHHHHHHHHHcC-----------CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhh
Q psy5721 1 MNIFACGALRNVISALADG-----------NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGR 69 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~-----------~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~ 69 (290)
.||+||++||+||.||+++ +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.
T Consensus 270 ~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~ 349 (366)
T 2zfi_A 270 NINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYAD 349 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHHTGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHHHHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHH
Confidence 3999999999999999873 24799999999999999999999999999999999999999999999999
Q ss_pred hccccccccccCcc
Q psy5721 70 RAKTIKNVVTVNEE 83 (290)
Q Consensus 70 rak~i~~~~~~n~~ 83 (290)
||+.|++.|.++..
T Consensus 350 rak~I~~~~~~~~~ 363 (366)
T 2zfi_A 350 RAKQIRNTVSVNHH 363 (366)
T ss_dssp HTC-----------
T ss_pred HHhhccCCCCCCCC
Confidence 99999999988753
No 15
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=99.91 E-value=1.2e-25 Score=209.91 Aligned_cols=73 Identities=73% Similarity=1.026 Sum_probs=70.9
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||.|
T Consensus 253 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 253 NINKSLSALGNVISALAEGS-TYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 325 (325)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHcCC-CCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHHHHHHHHHHHHHhccC
Confidence 59999999999999999986 89999999999999999999999999999999999999999999999999976
No 16
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=99.91 E-value=1.1e-25 Score=217.79 Aligned_cols=80 Identities=44% Similarity=0.633 Sum_probs=73.9
Q ss_pred CcchhHhHHHHHHHHHHcCCC---------------------CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChH
Q psy5721 1 MNIFACGALRNVISALADGNK---------------------THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNES 59 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~---------------------~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~ 59 (290)
.||+||++||+||.||++++. .||||||||||+||+|+|||||+|+||+||||+ +++
T Consensus 321 ~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ 398 (443)
T 2owm_A 321 NINKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYD 398 (443)
T ss_dssp CSSHHHHHHHHHHHHHCC-------------------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHH
T ss_pred hhcHHHHHHHHHHHHHhcccccccccccccccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHH
Confidence 599999999999999987542 499999999999999999999999999999997 599
Q ss_pred hhhhhhhhhhhccccccccccCc
Q psy5721 60 ETKSTLDFGRRAKTIKNVVTVNE 82 (290)
Q Consensus 60 EtlstL~fa~rak~i~~~~~~n~ 82 (290)
||++||+||.||+.|++.|.+|.
T Consensus 399 ETlsTLrfA~rak~I~n~~~vN~ 421 (443)
T 2owm_A 399 ETLSTLRYADQAKRIRTRAVVNQ 421 (443)
T ss_dssp HHHHHHHHHHHHTTCEECCCCCC
T ss_pred HHHHHHHHHHHHhhccccceecc
Confidence 99999999999999999999998
No 17
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=99.91 E-value=1.2e-25 Score=212.36 Aligned_cols=74 Identities=34% Similarity=0.465 Sum_probs=67.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++||+||.||++++..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||.|
T Consensus 285 ~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 285 YINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 59999999999999999987789999999999999999999999999999999999999999999999999976
No 18
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=99.91 E-value=1.6e-25 Score=210.74 Aligned_cols=79 Identities=35% Similarity=0.489 Sum_probs=73.1
Q ss_pred CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721 1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV 78 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~ 78 (290)
.||+||++||+||.||+++. ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+..+
T Consensus 266 ~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~r~~~i~~~~ 345 (347)
T 1f9v_A 266 NINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345 (347)
T ss_dssp HHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTTC-
T ss_pred HHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEeCCccccHHHHHHHHHHHHHHhhhccCC
Confidence 39999999999999999865 4799999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q psy5721 79 T 79 (290)
Q Consensus 79 ~ 79 (290)
.
T Consensus 346 r 346 (347)
T 1f9v_A 346 R 346 (347)
T ss_dssp -
T ss_pred C
Confidence 3
No 19
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=99.91 E-value=2.8e-25 Score=209.38 Aligned_cols=78 Identities=32% Similarity=0.391 Sum_probs=69.9
Q ss_pred CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721 1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV 78 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~ 78 (290)
.||+||++||+||.||+++.. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..+
T Consensus 269 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 269 NINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred hhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 399999999999999998653 699999999999999999999999999999999999999999999999999998654
No 20
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=99.91 E-value=2.3e-25 Score=210.30 Aligned_cols=74 Identities=50% Similarity=0.674 Sum_probs=63.7
Q ss_pred CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++||+||.||++++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||.|
T Consensus 280 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 280 NINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp --CHHHHHHHHHHHHHC--------CCGGGSHHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCcCCcccCHHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 49999999999999999864 369999999999999999999999999999999999999999999999999976
No 21
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=99.91 E-value=3e-25 Score=207.65 Aligned_cols=74 Identities=38% Similarity=0.588 Sum_probs=69.3
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK 75 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~ 75 (290)
.||+||++||+||.||++++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+
T Consensus 256 ~IN~SL~aLg~vI~aL~~~~-~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl~TL~fA~rak~i~ 329 (330)
T 2h58_A 256 HINKSLSALGDVIAALRSRQ-GHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKFAERVRSVE 329 (330)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC---
T ss_pred HhhHhHHHHHHHHHHHhcCC-CCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhhCc
Confidence 39999999999999999886 899999999999999999999999999999999999999999999999999885
No 22
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=99.91 E-value=3.9e-25 Score=209.96 Aligned_cols=73 Identities=37% Similarity=0.528 Sum_probs=65.8
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTI 74 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i 74 (290)
.||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|++++
T Consensus 304 ~INkSL~aLg~vI~aL~~~~-~hVPYRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 304 AINSSLSTLGLVIMALSNKE-SHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp ----CHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred HhhHHHHHHHHHHHHHhcCC-CccCCcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 49999999999999999976 89999999999999999999999999999999999999999999999999764
No 23
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=99.90 E-value=4.7e-25 Score=207.29 Aligned_cols=77 Identities=39% Similarity=0.488 Sum_probs=73.0
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV 78 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~ 78 (290)
.||+||++||+||.||+.++ .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.....+
T Consensus 263 ~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETlsTL~fA~ra~~~~~~~ 339 (344)
T 3dc4_A 263 NINLGLLSINKVVMSMAAGH-TVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRFGTSAKAAALEH 339 (344)
T ss_dssp CSCCHHHHHHHHHHHHHTTC-SSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhHhHHHHHHHHHHHhccC-CcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHHHHHHHHHHHHHhhcCCCC
Confidence 49999999999999999987 899999999999999999999999999999999999999999999999999776543
No 24
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5e-25 Score=211.21 Aligned_cols=79 Identities=35% Similarity=0.484 Sum_probs=70.7
Q ss_pred CcchhHhHHHHHHHHHHcCCC--CCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcccccccc
Q psy5721 1 MNIFACGALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVV 78 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~--~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~ 78 (290)
.||+||++||+||.||+++.. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..+
T Consensus 322 ~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~ 401 (403)
T 4etp_A 322 NINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401 (403)
T ss_dssp HHHHHHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC----
T ss_pred HHHHHHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCC
Confidence 399999999999999998653 599999999999999999999999999999999999999999999999999998765
Q ss_pred c
Q psy5721 79 T 79 (290)
Q Consensus 79 ~ 79 (290)
.
T Consensus 402 r 402 (403)
T 4etp_A 402 R 402 (403)
T ss_dssp -
T ss_pred C
Confidence 3
No 25
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=99.90 E-value=5.5e-25 Score=211.25 Aligned_cols=76 Identities=38% Similarity=0.470 Sum_probs=72.7
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV 77 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~ 77 (290)
.||+||++||+||.||+++. .||||||||||+||+|+|||||+|+||+||||+..+++||++||+||+|++.|+..
T Consensus 310 ~INkSL~aLg~vI~aL~~~~-~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~ 385 (412)
T 3u06_A 310 NINRSLSELTNVILALLQKQ-DHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMT 385 (412)
T ss_dssp TTTHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC-
T ss_pred HHhHHHHHHHHHHHHHhccC-CCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhcccc
Confidence 59999999999999999976 89999999999999999999999999999999999999999999999999999854
No 26
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=99.90 E-value=5.6e-25 Score=209.34 Aligned_cols=76 Identities=34% Similarity=0.467 Sum_probs=69.5
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhh-cCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNV 77 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~-l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~ 77 (290)
.||+||++||+||.||+++. .||||||||||+||+|+ +||||+|+||+||||+..+++||++||+||.||+.|++.
T Consensus 309 ~INkSL~aLg~vI~aL~~~~-~hvPYRdSKLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 309 EINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SCCCGGGSHHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHhHHHHHHHHHHHHHhcCC-CCCCccccHHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 39999999999999999876 89999999999999999 599999999999999999999999999999999999764
No 27
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=99.90 E-value=1e-24 Score=205.11 Aligned_cols=72 Identities=54% Similarity=0.754 Sum_probs=68.5
Q ss_pred CcchhHhHHHHHHHHHHcCC--CCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhcc
Q psy5721 1 MNIFACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAK 72 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~--~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak 72 (290)
.||+||++||+||.||++++ ..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.|||
T Consensus 271 ~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 271 QINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred eechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEEEEEeCCCccchhHHhhhhhhhhhcC
Confidence 59999999999999999854 3699999999999999999999999999999999999999999999999996
No 28
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=99.90 E-value=7.3e-25 Score=209.84 Aligned_cols=78 Identities=33% Similarity=0.452 Sum_probs=66.0
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhh-cCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVT 79 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~-l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~~~~~ 79 (290)
.||+||++||+||.||+.+. .||||||||||+||+|+ +||||+|+||+||||+..+++||++||+||.||+.|...|.
T Consensus 329 ~INkSL~aLg~vI~aL~~~~-~hIPYRdSKLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~~ 407 (410)
T 1v8k_A 329 EINKSLLALKECIRALGQNK-AHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHH 407 (410)
T ss_dssp HHHHHHHHHHHHHHHHTC-------CCCCHHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC----
T ss_pred HHhHHHHHHHHHHHHHhcCC-CCCCcccchhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCCC
Confidence 39999999999999999876 89999999999999999 59999999999999999999999999999999999876553
No 29
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=99.90 E-value=1e-24 Score=205.80 Aligned_cols=73 Identities=47% Similarity=0.587 Sum_probs=68.0
Q ss_pred CcchhHhHHHHHHHHHHcC-----CCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccc
Q psy5721 1 MNIFACGALRNVISALADG-----NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKT 73 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~-----~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~ 73 (290)
.||+||++||+||.||+++ +..||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.+|+.
T Consensus 272 ~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 272 NINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHHHhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 3999999999999999873 347999999999999999999999999999999999999999999999999974
No 30
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=99.89 E-value=3.3e-24 Score=218.96 Aligned_cols=75 Identities=33% Similarity=0.527 Sum_probs=70.9
Q ss_pred CcchhHhHHHHHHHHHHcCCCCCCCCCCChhhhhchhhcCCCCcceEEEeeCCCCCChHhhhhhhhhhhhccccc
Q psy5721 1 MNIFACGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIK 75 (290)
Q Consensus 1 ~IN~SL~~L~~vi~aL~~~~~~~vPyRdSkLT~lL~~~l~g~~~t~mi~~vsp~~~~~~EtlstL~fa~rak~i~ 75 (290)
.||+||++||+||.+|+.+...||||||||||+||+|+|||||+|+||+||||+..+++||++||+||.||+.|+
T Consensus 638 ~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slggn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~ 712 (715)
T 4h1g_A 638 AINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNNTR 712 (715)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcCCCceEEEEEEECCChhhHHHHHHHHHHHHHhccce
Confidence 399999999999999998777899999999999999999999999999999999999999999999999999986
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=96.74 E-value=0.064 Score=52.59 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+.+.+.+..+.+..+.+..++....+.+.+.+++++..+++...+++..+..+..+..+++|++..+++++++++++++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5566666677777777777777777777777777777777777777777777777788888888888888877777654
No 32
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.18 E-value=0.5 Score=40.13 Aligned_cols=77 Identities=18% Similarity=0.186 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
++...+++|..+......++..+.+.+.....+++.......-+..+...++.+=+++--|+.+|+|+...-+..||
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QR 165 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQR 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666667777777777777777777777777777777777777777777777788777765555554
No 33
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.47 E-value=0.26 Score=39.83 Aligned_cols=40 Identities=15% Similarity=0.201 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 211 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 211 e~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
..+.++...++.+..++..++.++..+..++.+|+.++++
T Consensus 96 ~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 96 HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444555555555555555555443
No 34
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=95.33 E-value=0.16 Score=38.87 Aligned_cols=81 Identities=25% Similarity=0.329 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+++..+-.-...+.|.+-+.+.=++.-|+..+.++++.++.+.++......++.++......++.++..++.+|.+...-
T Consensus 8 EEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~L 87 (103)
T 4h22_A 8 EEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEM 87 (103)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455666777778888899999999999999999999999999999999999999999999999998876654
Q ss_pred h
Q psy5721 255 L 255 (290)
Q Consensus 255 l 255 (290)
|
T Consensus 88 I 88 (103)
T 4h22_A 88 L 88 (103)
T ss_dssp C
T ss_pred H
Confidence 4
No 35
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=95.17 E-value=1.3 Score=37.53 Aligned_cols=11 Identities=0% Similarity=0.021 Sum_probs=3.9
Q ss_pred HHHHHHHHHHH
Q psy5721 100 SSRYKGKLEKL 110 (290)
Q Consensus 100 ~~~l~~~i~~L 110 (290)
+..+...+..+
T Consensus 15 ~~~~~~~~~~l 25 (284)
T 1c1g_A 15 KENALDRADEA 25 (284)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 36
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.11 E-value=0.28 Score=39.60 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~ 235 (290)
.-.+.++...|.+++.++++++..+...+..++.++......+..+.+++..++.++.+|+.++.
T Consensus 70 l~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 70 YFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777666666666666666666666666666666666666655544
No 37
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.04 E-value=1 Score=35.72 Aligned_cols=85 Identities=14% Similarity=0.252 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
....+..+.+.|..+|..-...+......+..|...-.+.+..+..+...++..+.....|..+-..+.+++.+|...++
T Consensus 42 ~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~le 121 (129)
T 2fxo_A 42 KMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDID 121 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666766666555555555566666666666666666666666666666666666666666666666666666
Q ss_pred HHHhh
Q psy5721 250 EPTRT 254 (290)
Q Consensus 250 E~~~~ 254 (290)
++..+
T Consensus 122 d~e~~ 126 (129)
T 2fxo_A 122 DLELT 126 (129)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 65543
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.78 E-value=1.2 Score=37.77 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.++..+..+..++.+....++.+...++..+.++...... ....+..++.++..++..++.++..+++|+++-+++.
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e---~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ---SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3333444444444444444444444444444333222221 1223666677777777777777777777777766665
Q ss_pred hh
Q psy5721 253 RT 254 (290)
Q Consensus 253 ~~ 254 (290)
..
T Consensus 123 r~ 124 (189)
T 2v71_A 123 RA 124 (189)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=94.60 E-value=1.2 Score=34.59 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.+..+-++-|.+.+.+-..-++.+..|+..|....... .+.++.++.++..|..+++.+..++..|..+.+.+...+
T Consensus 32 ~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~---q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 32 QELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHh
Confidence 34444445556666666666666777766554333222 445777777777777777777777777777777777777
Q ss_pred hhhhhccCC
Q psy5721 256 LNFFRQSSP 264 (290)
Q Consensus 256 ~~~~~~~~~ 264 (290)
-...+.+++
T Consensus 109 ~~~~~~~~~ 117 (121)
T 3mq7_A 109 ADKKYYPSS 117 (121)
T ss_dssp C--------
T ss_pred hhcccCccc
Confidence 666664444
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.99 E-value=1.5 Score=33.26 Aligned_cols=66 Identities=9% Similarity=0.113 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
.+.+++..|....+.-.+...+....+..+.......+..+.++.+.+..++.++..++..+..+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~ 71 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444444444444444444444444444444444444444443333333
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.95 E-value=0.9 Score=44.30 Aligned_cols=39 Identities=15% Similarity=0.173 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+.++.+..+++...+..++.+.++.+++..+.+.+-.+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~ 578 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLE 578 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445455555555555555555544444433
No 42
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.91 E-value=0.39 Score=51.01 Aligned_cols=57 Identities=14% Similarity=0.119 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 196 SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTR----LTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 196 ~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~----lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
...+..+.+++.+.++.+..+.++.+.++++... |+..+..+++++..|+++++++.
T Consensus 983 ~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444333322 22333444455555555555444
No 43
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.85 E-value=1 Score=39.70 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy5721 106 KLEKLEL 112 (290)
Q Consensus 106 ~i~~L~~ 112 (290)
+|..+..
T Consensus 19 ~i~~l~~ 25 (256)
T 3na7_A 19 EIDSLEP 25 (256)
T ss_dssp HHHHTHH
T ss_pred HHHHHHH
Confidence 3333333
No 44
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=93.71 E-value=1.5 Score=33.20 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~ 221 (290)
..+.+++..|..++...+.++..+...+.+-+..-..-+.....+..+++
T Consensus 8 e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 57 (97)
T 2eqb_B 8 NQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 57 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665554444444333333333333333333
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=93.71 E-value=1.4 Score=35.93 Aligned_cols=64 Identities=13% Similarity=0.190 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 191 ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
.|..+..++..++.++.+.++.+....+.++.++.++..|+.++..++++++.++.+-.++...
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~R 132 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVAR 132 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555566666666666666666666666666666666666666666666655555443
No 46
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.69 E-value=0.73 Score=38.34 Aligned_cols=73 Identities=19% Similarity=0.251 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+++..|+.+|.+..+.+..-.....++++...+.....+.++..+..|+..+..|+..-+++.+++..|+.+|
T Consensus 6 eKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L 78 (168)
T 3o0z_A 6 EKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAIL 78 (168)
T ss_dssp ----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555544444444444444444433333333333333333333333333333333333333333
No 47
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.52 E-value=2.5 Score=37.17 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
..+..++..+...+...+++|......++.++..+...+..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433333333333
No 48
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.46 E-value=1.6 Score=31.71 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 199 AEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 199 ~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.+.+..++...+......+.++..++.++..++.+++.+.+.+...+..|++.....
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555556666677777777777788888888888888888888776543
No 49
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.32 E-value=2.2 Score=33.03 Aligned_cols=74 Identities=18% Similarity=0.185 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
.+.....+|..+......+...+.+.+.....+++.......-+..+...+..+=+++--|+.+|+|+....+.
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~ 109 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLESELDEKESLLVS 109 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555666666666677777777777777777777777777778888888888888888889888765544
No 50
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=93.17 E-value=1.8 Score=31.61 Aligned_cols=51 Identities=22% Similarity=0.313 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 198 YAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 198 ~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+++.||.+..........++...+.+..++.+|+.|..+-.++++.|.-.+
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344433333333333333334455555556666666666655555444
No 51
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.13 E-value=1.1 Score=35.17 Aligned_cols=70 Identities=23% Similarity=0.216 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
+++|..|..+...++.++.++... .......+..|...+..|..+++..+........+.+.+.+.+..+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555433 2333445555555666666666555555444444444444444443
No 52
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.06 E-value=1.4 Score=46.89 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+...++++..+...+.++.++....++.+..+. +.+++++..|..++..+++++.++...+.+.+
T Consensus 985 ~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~ 1050 (1080)
T 2dfs_A 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555554444444444443333 34455566666666666666666664444433
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=92.74 E-value=2.7 Score=32.40 Aligned_cols=35 Identities=23% Similarity=0.244 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ 204 (290)
+...|..+.......|..|..+|..+++.+.+.+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666555555554433
No 54
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.62 E-value=0.55 Score=39.68 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh----
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF---- 259 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~---- 259 (290)
+++..+..|..+..++..|.+++......+..+++++..++.+....+..+....+.+.-...-++.+.--++...
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~e~LTGl~V~~~~ed~ 93 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLYEYLCNVRVHKSYEDD 93 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEECCCCCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHHHHccCcEEEEEEEcC
Confidence 3333444444444444444444444444444444444444444444444443333444444444555543333322
Q ss_pred -------hccCCCC----cchhhhhhccCCC
Q psy5721 260 -------RQSSPKG----TLLYNHYLLGWPN 279 (290)
Q Consensus 260 -------~~~~~~~----~~~~~~~~~~~~~ 279 (290)
.|++..| +-+..||-||.+.
T Consensus 94 ~~~~FDc~Qtg~nG~~~~~~~tl~ykL~i~k 124 (190)
T 4emc_A 94 SGLWFDISQGTHSGGSSDDYSIMDYKLGFVK 124 (190)
T ss_dssp SCEEEEEEESCCC-----CCCCCCEEEEEC-
T ss_pred CCeEEEEEecCCCCCcCCcceEEEEEEeecc
Confidence 6777666 3455799998876
No 55
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.01 E-value=0.63 Score=33.28 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~ 221 (290)
+..|+..|..++++|.+....+..+..++.+.+..+..++.+..
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777766666666666555555555544444433
No 56
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=91.87 E-value=0.96 Score=34.22 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
...+.++.++...+.+......++.+|...+.+........+.....++.++..|.+.+
T Consensus 5 ~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 5 SNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888888888888888888888888888888888888888888888888887755
No 57
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=91.16 E-value=3.3 Score=30.19 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
++..+..|.+.-..+.-|+-++.+.+++...+..+++.+...-..+..+++.++++...-+..|..
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666665555555555555555555555555555555555544443
No 58
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=91.15 E-value=1.5 Score=46.86 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.2
Q ss_pred CCcceEEEeeCCCCC
Q psy5721 42 NARTTIIICCSPASF 56 (290)
Q Consensus 42 ~~~t~mi~~vsp~~~ 56 (290)
.+...+|-||-|...
T Consensus 675 ~t~phfvRCIkPN~~ 689 (1184)
T 1i84_S 675 NTNPNFVRCIIPNHE 689 (1184)
T ss_dssp TSEEEECCEECCCSS
T ss_pred hcCCCceeeeCCCCc
Confidence 578889999999754
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.91 E-value=1.6 Score=41.53 Aligned_cols=49 Identities=29% Similarity=0.287 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
+.....++.+..+++.+.+.++++.++.++.++..++.++.+.+.++-+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 3334455555666666666677777777777777777777777666554
No 60
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.51 E-value=2.4 Score=49.91 Aligned_cols=15 Identities=20% Similarity=0.343 Sum_probs=10.6
Q ss_pred CcceEEEeeCCCCCC
Q psy5721 43 ARTTIIICCSPASFN 57 (290)
Q Consensus 43 ~~t~mi~~vsp~~~~ 57 (290)
.+.-+|.|+||....
T Consensus 1776 ~NLHvVL~mSPvg~~ 1790 (3245)
T 3vkg_A 1776 RNLHVVFTMNPASPD 1790 (3245)
T ss_dssp TTCCEEEEECTTSTT
T ss_pred HcCEEEEEECCCCHH
Confidence 366778888887544
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=90.28 E-value=4.7 Score=30.44 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 210 EELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 210 ee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+......+.++..|+.++..+..+++.+.+.+.+..+.|++
T Consensus 36 e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee 76 (101)
T 3u1c_A 36 EERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLF 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 62
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=90.02 E-value=2.1 Score=30.12 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq 231 (290)
....|..+++++++||..+...+..++.++...-+....++.+....+.....|.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3456888999999999999999999988887666665555555555444444443
No 63
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=89.65 E-value=5.2 Score=29.96 Aligned_cols=73 Identities=21% Similarity=0.309 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE---ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qe---e~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..|..+|...++-+......+.+|++.+..++ +.+.-++..+..+..+...=.+--+.+.++..+|+..+.-+
T Consensus 5 ~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~l 80 (94)
T 3jsv_C 5 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 80 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34555566666666555566666666555554 33344445555555544433333333444444444444333
No 64
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.61 E-value=1.2 Score=35.75 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE---------------NESAKEEVKEVL 245 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E---------------~~~~~~e~kel~ 245 (290)
+...++.....+......+.+|...+.+....-...+.....++.++..|.+. -..++.++..|.
T Consensus 30 l~~~l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~ 109 (135)
T 2e7s_A 30 LKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLT 109 (135)
T ss_dssp HHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333333334444444444433333344444444444444444432 366788889999
Q ss_pred HHHhHHHhhhhhhhhccCCCCcchh
Q psy5721 246 QALEEPTRTLLNFFRQSSPKGTLLY 270 (290)
Q Consensus 246 q~LeE~~~~l~~~~~~~~~~~~~~~ 270 (290)
.++.++...|..++-|..-=+.+|+
T Consensus 110 ~ql~e~e~ll~~lq~QL~~LK~v~~ 134 (135)
T 2e7s_A 110 EQLREKDMLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HTTTHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999888888877666654
No 65
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.58 E-value=5.9 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 221 EQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 221 ~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..|+.++..++...+.+...+++|+++-+++.
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLE 69 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 69 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 33444444444444555555555554444443
No 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=89.45 E-value=6.6 Score=30.89 Aligned_cols=47 Identities=6% Similarity=0.075 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
..++..+..+...+......+..+....+.+++.+.++...|.++..
T Consensus 79 ~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~e~ 125 (129)
T 2fxo_A 79 IQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLEL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666777888888888888888888877653
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.12 E-value=2.8 Score=39.87 Aligned_cols=43 Identities=9% Similarity=0.022 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 213 ~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
....+.+.++...+....+.+.+.++++...++..+++....+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333333333444444444444444444444444444444433
No 68
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=89.12 E-value=5.8 Score=29.83 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
++..++.++..++.+++.+.+.+......|++.
T Consensus 45 ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ 77 (101)
T 3u59_A 45 EQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344444444444444444444333
No 69
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=88.29 E-value=5.6 Score=28.66 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEE 240 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e 240 (290)
+++..|....+.-..........+..........+..+.++.+.+..++.++.+.+..+..+...
T Consensus 6 kKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~k 70 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444333
No 70
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=88.08 E-value=7.1 Score=29.56 Aligned_cols=90 Identities=20% Similarity=0.186 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI---------------TTARRDYEQLQGEMTRLTQENES 236 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~---------------~~~~~e~~~l~~el~~lq~E~~~ 236 (290)
+....+...+++++......+..+...+..+..-+.+.+..- .....-...++..+..+..+...
T Consensus 9 Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~ 88 (117)
T 2zqm_A 9 QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNA 88 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555444444333322221110 11223333444555555555566
Q ss_pred HHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 237 AKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 237 ~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
+......+...++++...|-.++.+
T Consensus 89 le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 89 LERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6666666666666666666666644
No 71
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=87.46 E-value=3 Score=30.32 Aligned_cols=46 Identities=17% Similarity=0.206 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 207 MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 207 ~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
++.+.....++..+..++..+..-+.+-+.++.+++.+.+.|+-+-
T Consensus 16 q~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI 61 (79)
T 3cvf_A 16 QDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSL 61 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3333333333333344444444444444444444444444433333
No 72
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.87 E-value=11 Score=30.75 Aligned_cols=42 Identities=10% Similarity=0.095 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
.+...++.+...|+.++...+.-+..++.+|.+++.-+..+.
T Consensus 108 ~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 108 KEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444445555555555555555555555554444443
No 73
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=86.87 E-value=11 Score=30.58 Aligned_cols=52 Identities=19% Similarity=0.106 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 192 INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 192 i~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
+..+...+..+...+......+..+..++..++-++..++..+..+++|++.
T Consensus 77 l~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 77 LKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333334444444444444444444444433
No 74
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=86.84 E-value=12 Score=30.93 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=48.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q psy5721 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYA-------EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK- 238 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~-------~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~- 238 (290)
....+..++++...|+.+|..-...-.+....+ ..|..++............++..+.+.+..+..+.....
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ei 139 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEI 139 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345566777777888877766554444444433 444444444444455555555666666666666655555
Q ss_pred ---HHHHHHHHHHh
Q psy5721 239 ---EEVKEVLQALE 249 (290)
Q Consensus 239 ---~e~kel~q~Le 249 (290)
-++|-+++.++
T Consensus 140 d~~~eLKalQ~~~e 153 (168)
T 3o0z_A 140 DLNYKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666554
No 75
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=86.47 E-value=8.6 Score=28.85 Aligned_cols=28 Identities=11% Similarity=0.160 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 207 MEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 207 ~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
...+..+.++.+.+..++.++...+..+
T Consensus 40 ~~~E~ei~sL~kKiq~lE~eld~~~e~l 67 (101)
T 3u59_A 40 KQLEEEQQGLQKKLKGTEDEVEKYSESV 67 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 76
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=86.16 E-value=9.9 Score=29.22 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
++..|..+|...++.+......+.++++++...+.
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555544433
No 77
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=86.12 E-value=13 Score=30.42 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~ 221 (290)
..|++++..|..+|.+-+.....-...+.+|...+...+..+......+.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~ 122 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYK 122 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555544444444444444444444444443333333
No 78
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=86.00 E-value=7.2 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQ 197 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~ 197 (290)
..+..|+..|..||.+|..+..
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e 39 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKE 39 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788888888888865543
No 79
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=85.74 E-value=9.3 Score=28.56 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 170 e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
+...+..+.+.|.+.|.+.+.+-..+...+..+..+.
T Consensus 12 eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~ 48 (96)
T 3q8t_A 12 ELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEA 48 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444555555555544444444444444444333
No 80
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=85.52 E-value=3.6 Score=29.33 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 230 LTQENESAKEEVKEVLQ 246 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q 246 (290)
+..+++..+.++++|+.
T Consensus 45 LEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 45 LELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=85.25 E-value=8.2 Score=27.47 Aligned_cols=54 Identities=13% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 205 QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 205 ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
++++.+.....++..+..++..+..-+.+-+.++.+++.+.+.|+-+-..|.++
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~el 61 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTEL 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444444444444444444444444444444455555555444444444433
No 82
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=84.63 E-value=12 Score=28.95 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQS 196 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~ 196 (290)
.|+..+..|+.+++....+-..+.
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~ 40 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVE 40 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666655444333333
No 83
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=84.43 E-value=11 Score=28.34 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
+...+.++..++.++..++.++..+..+++++...+-
T Consensus 66 i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 66 LSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555544443
No 84
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.25 E-value=13 Score=29.03 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ 241 (290)
..++..++..+.....+|..+......|...+.+.+..... ....++..+..+..++..++.+.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~ 98 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDM 98 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566667777777777777777777776666665554322 23333344444444444444433
No 85
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=83.95 E-value=14 Score=29.02 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI 213 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~ 213 (290)
..++..++..++....+|..+......|...+.+.+...
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~ 75 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRY 75 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666666665555543
No 86
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=82.65 E-value=13 Score=27.76 Aligned_cols=87 Identities=14% Similarity=0.182 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
..+..+...+...=...-.++..+...-..+..++...+.....+..+-..+-.+.+.++.++-....+...+..++.=.
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~ 86 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYA 86 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444455555555555555555555555544444444444444444444444555555555444444
Q ss_pred Hhhhhhh
Q psy5721 252 TRTLLNF 258 (290)
Q Consensus 252 ~~~l~~~ 258 (290)
..+|.-+
T Consensus 87 ~~qLdkL 93 (96)
T 3q8t_A 87 QMQLDKL 93 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444433
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=82.59 E-value=6.1 Score=25.00 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
+.+.....++..+..|++.+..|+.|+..+++-++
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 33444445555666677777778888877776543
No 88
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=82.10 E-value=17 Score=28.81 Aligned_cols=64 Identities=17% Similarity=0.301 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~ 235 (290)
..++.-...+..++++-..++...-.++..-+.+..+.........+++.++..++..+|+.++
T Consensus 14 a~L~~D~~s~~~eleEnqeEL~iVgkML~EEqgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~ 77 (167)
T 4gkw_A 14 ADLKQDTESLQKQLEENQEELEIVGNMLREEQGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLE 77 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHH
Confidence 4566666667777777777776666666666555555555555555555555555555555443
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=81.98 E-value=3.6 Score=25.12 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLK 203 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk 203 (290)
.+.++|+..+.+|+++|..+++....|.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567777788888888877666655543
No 90
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=81.93 E-value=12 Score=27.04 Aligned_cols=19 Identities=11% Similarity=0.242 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 228 TRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q 246 (290)
..||.++.....+++.|+.
T Consensus 57 ~~Lq~qLe~kd~ei~rL~~ 75 (81)
T 3qh9_A 57 AQLQEQVALKDAEIERLHS 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHH
Confidence 3334444444444444433
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=80.31 E-value=1e+02 Score=36.61 Aligned_cols=82 Identities=15% Similarity=0.093 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
...++++....+..|.++++++..+...+..|+.+......+...++.+.+..+.++.+-..-...+..|...=.+..++
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~ 2095 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSEN 2095 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHH
Confidence 33444444555555555555555555555555555444444444444444444444444444334444444443334444
Q ss_pred HH
Q psy5721 251 PT 252 (290)
Q Consensus 251 ~~ 252 (290)
+.
T Consensus 2096 l~ 2097 (3245)
T 3vkg_A 2096 FN 2097 (3245)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 92
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=80.12 E-value=15 Score=26.89 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=9.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy5721 167 SNEERQKLEEERERLYQQLDE 187 (290)
Q Consensus 167 ~~~e~~~l~e~~~~L~~~L~e 187 (290)
.+.+.....+++..+...+..
T Consensus 12 ~eeEm~~~eeel~~lke~l~k 32 (89)
T 3bas_A 12 QEEEMKEQLKQMDKMKEDLAK 32 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555544433
No 93
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=79.91 E-value=15 Score=26.85 Aligned_cols=42 Identities=19% Similarity=0.173 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE 226 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~e 226 (290)
+..++.++..+...+++......+.+.....+..+...|..+
T Consensus 16 m~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q 57 (89)
T 3bas_A 16 MKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333333333
No 94
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=79.77 E-value=22 Score=34.46 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKD 189 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd 189 (290)
...-+.+...+++|+.++++..
T Consensus 56 dkqErDltkrINELKnqLEdls 77 (562)
T 3ghg_A 56 DEVNQDFTNRINKLKNSLFEYQ 77 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHH
T ss_pred HhhcCcHHHHHHHHHHHHHHHH
Confidence 3344567777888887776653
No 95
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.13 E-value=24 Score=28.68 Aligned_cols=32 Identities=19% Similarity=0.053 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLNFFRQSSP 264 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~ 264 (290)
+-..++.++..|..++.++...|..++-|..-
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~ 140 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLKN 140 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556777777888888887777777766543
No 96
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=79.12 E-value=15 Score=26.58 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
...-.++..|..++..++.++..++++++.|..-+++..
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555566666666666665555544444433
No 97
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=79.02 E-value=9.3 Score=25.30 Aligned_cols=37 Identities=8% Similarity=0.206 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 215 TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 215 ~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
.+...+..+..+..+|...+..+++++..|..+++.+
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555556666666666666666666554
No 98
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=78.54 E-value=14 Score=28.02 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 223 LQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 223 l~~el~~lq~E~~~~~~e~kel 244 (290)
.+.++..||.|++.++..++.+
T Consensus 73 ~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 73 LREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666665544
No 99
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=77.28 E-value=18 Score=26.27 Aligned_cols=36 Identities=17% Similarity=0.351 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
..+..++..|...++.++.+++.+++..+++-..|+
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555554
No 100
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.06 E-value=19 Score=28.11 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLK 203 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk 203 (290)
..+..++...+..|...++........+...+..++
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e 70 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAE 70 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 344445555555555555555544444444444433
No 101
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=76.86 E-value=5 Score=26.78 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 228 TRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 228 ~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
..|+.|++.++.++..|..+++|+...
T Consensus 22 eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 22 ELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 102
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.76 E-value=19 Score=26.06 Aligned_cols=49 Identities=24% Similarity=0.297 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
|+.++...+..+...+.+-..++.++.++...++..=.++.++.+.|-.
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3333333444444444444455555556666666666666666655543
No 103
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.72 E-value=11 Score=25.84 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~ 234 (290)
+.++..|..++..|+.|+
T Consensus 36 ~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 36 EKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 104
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=76.23 E-value=9.2 Score=26.25 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
.++.+...|..+|..++.++..|+.++.-+...|.
T Consensus 27 ~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 27 ALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555555555554444443
No 105
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=76.06 E-value=23 Score=26.85 Aligned_cols=24 Identities=8% Similarity=0.113 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
+-+.+..+++.++.+|+.+|-+..
T Consensus 79 ~R~~~Vsalq~KiaeLKrqLAd~v 102 (107)
T 2k48_A 79 NRRAAVSTLETKLGELKRQLADLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666655544
No 106
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=75.80 E-value=57 Score=31.20 Aligned_cols=29 Identities=14% Similarity=0.198 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
.+..|+..++.++.++..|+..+..+...
T Consensus 169 ~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 169 SLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555566666666666666554443
No 107
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=75.36 E-value=23 Score=26.53 Aligned_cols=82 Identities=11% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ---------------IMEQEELITTARRDYEQLQGEMTRLTQENE 235 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q---------------l~~qee~~~~~~~e~~~l~~el~~lq~E~~ 235 (290)
...+..+...+..++...+.++......+..+..- ..+..+....+....+.++.++..+..+.+
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~ 94 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK 94 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666555544331 125555666666777777777777777777
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy5721 236 SAKEEVKEVLQALEEPT 252 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~ 252 (290)
....++.+++..|.++-
T Consensus 95 ~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 95 KLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777776654
No 108
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=74.82 E-value=28 Score=33.63 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 171 ~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
.-.+.++...+..++++...+.|..++.+.+++..-...+ .....+.+.+..+...+..++..++++.++++.++.+
T Consensus 72 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~---~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~ 148 (501)
T 1wle_A 72 IISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ---VQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYL 148 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT---GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666666666666666655432210000 0000133455667777888888888888888888888
Q ss_pred HHhhhhhhhhccCCCCc
Q psy5721 251 PTRTLLNFFRQSSPKGT 267 (290)
Q Consensus 251 ~~~~l~~~~~~~~~~~~ 267 (290)
+...|=++.-.+-|-|.
T Consensus 149 ~l~~iPN~~~~~vP~g~ 165 (501)
T 1wle_A 149 RALRLPNQTHPDVPVGD 165 (501)
T ss_dssp HHTTSCCCCCTTCCCSS
T ss_pred HHHhCCCCCCCCCCCCC
Confidence 88888888877777663
No 109
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=74.72 E-value=17 Score=28.51 Aligned_cols=12 Identities=17% Similarity=0.191 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDE 187 (290)
Q Consensus 176 e~~~~L~~~L~e 187 (290)
..+..|...++.
T Consensus 45 r~iq~L~~el~~ 56 (131)
T 3tnu_A 45 RTMQNLEIELQS 56 (131)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 110
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=74.54 E-value=20 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHhhhhh
Q psy5721 240 EVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 240 e~kel~q~LeE~~~~l~~ 257 (290)
.+++|+..|.|+.....+
T Consensus 99 KLrELEADLKEKDsMVe~ 116 (167)
T 4gkw_A 99 KLGELEADLKEKDSMVES 116 (167)
T ss_dssp HTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhHHhhhhHHHHH
Confidence 455666666666555443
No 111
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=74.29 E-value=22 Score=25.73 Aligned_cols=23 Identities=13% Similarity=0.206 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
.+.++++..|+++|+.+.+.+-.
T Consensus 50 KsTK~El~~Lq~qLe~kd~ei~r 72 (81)
T 3qh9_A 50 KATKAEVAQLQEQVALKDAEIER 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHH
Confidence 33334444444444444443333
No 112
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=74.27 E-value=24 Score=26.08 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 210 EELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 210 ee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
.+....+....+.++.++..+..+.+....++.+++..|
T Consensus 64 ~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 64 DELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555555555555555444444
No 113
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=73.79 E-value=23 Score=25.77 Aligned_cols=17 Identities=18% Similarity=0.298 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 190 EEINQQSQYAEKLKEQI 206 (290)
Q Consensus 190 ~ei~~~~~~~~klk~ql 206 (290)
-++......++.++.+.
T Consensus 21 ~e~dn~~~~~edfk~Ky 37 (86)
T 3swk_A 21 VERDNLAEDIMRLREKL 37 (86)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 114
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=73.19 E-value=40 Score=31.51 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.-+...+.++.+++++.++|+++.+++-++
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 440 QGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333445556666666666666666665443
No 115
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=72.57 E-value=8 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.451 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5721 232 QENESAKEEVKEVLQA 247 (290)
Q Consensus 232 ~E~~~~~~e~kel~q~ 247 (290)
.+++.++..+..|..+
T Consensus 50 ~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 50 LENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 116
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=72.55 E-value=37 Score=27.58 Aligned_cols=62 Identities=16% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
..+..|..++.+-+......++.+..|+..+.++..++...+...+.+...|+..-..|..+
T Consensus 77 eqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~ 138 (155)
T 2efr_A 77 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEEL 138 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455566666666666777788889999999999999998988888888888655555443
No 117
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.01 E-value=13 Score=25.13 Aligned_cols=33 Identities=15% Similarity=0.180 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
.++.+...|..++..+..++..|..++..+...
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555555554444443
No 118
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=71.72 E-value=27 Score=26.37 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
..++++..|+.+.+.+...+-.+
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~l 94 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAM 94 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666655554443
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.71 E-value=17 Score=26.04 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
...+.+.+.+++.+..+++.|.+.+.
T Consensus 34 n~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 34 SEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444333333333
No 120
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=71.36 E-value=23 Score=34.13 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 174 l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+.++...+..++++...+.|..++.+.+++.. .++.+.+..+...+..++..++++..+++.++.++..
T Consensus 38 ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~-----------~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA-----------KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555544444433221 1123456667777888888888888888888888888
Q ss_pred hhhhhhhccCCCC
Q psy5721 254 TLLNFFRQSSPKG 266 (290)
Q Consensus 254 ~l~~~~~~~~~~~ 266 (290)
.|=++.-.+-|-|
T Consensus 107 ~iPN~~~~~vP~g 119 (485)
T 3qne_A 107 QVGNIVHESVVDS 119 (485)
T ss_dssp TSCCCCCTTSCCC
T ss_pred hCCCCCCccCCCC
Confidence 8888877777766
No 121
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=70.70 E-value=22 Score=24.19 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q psy5721 230 LTQENESAKEEV 241 (290)
Q Consensus 230 lq~E~~~~~~e~ 241 (290)
|..++..+..++
T Consensus 42 L~~ei~~L~~e~ 53 (63)
T 2wt7_A 42 LQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 122
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=69.99 E-value=21 Score=25.12 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 215 TARRDYEQLQGEMTRLTQENES 236 (290)
Q Consensus 215 ~~~~e~~~l~~el~~lq~E~~~ 236 (290)
.+..++..|..++..|+.|+..
T Consensus 47 ~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 47 STTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555443
No 123
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=69.95 E-value=32 Score=33.12 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHH------HH-HHHHHHHH----HHH-HHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ------IMEQEELI------TT-ARRDYEQL----QGE-MTRLTQE 233 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q------l~~qee~~------~~-~~~e~~~l----~~e-l~~lq~E 233 (290)
-.+.++...+...+++...+.|..++.+.+++.. -......+ .. ...+.+.+ ..+ ...+..+
T Consensus 40 ~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~ 119 (484)
T 3lss_A 40 IEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQ 119 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHHHH
Confidence 3444555556666666666666666666655441 00000000 00 11223334 445 6677778
Q ss_pred HHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCc
Q psy5721 234 NESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGT 267 (290)
Q Consensus 234 ~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~ 267 (290)
+..++++..+++.++.++...|=++.-.+-|-|.
T Consensus 120 i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~ 153 (484)
T 3lss_A 120 VAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQ 153 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 8888888888888888888888887777777663
No 124
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=69.91 E-value=9.2 Score=35.94 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccC
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~ 263 (290)
++.++...++....++++++.++.++..+..++...+..-+.|..++.|++-++-.+-|.-.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP 69 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRP 69 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 34444444445555555566666666667777777777888888899999988888776654
No 125
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=69.71 E-value=8.1 Score=28.81 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=38.4
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLD-EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238 (290)
Q Consensus 176 e~~~~L~~~L~-ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~ 238 (290)
.+...++.+-+ +.+..|+++-+++...+..+-+.+.....+ .+.+++++.+|..|++...
T Consensus 28 ~e~~~~k~q~~~eyE~ki~~Qi~Emq~Ir~tvyeLE~~h~km---Kq~YEeEI~rLr~eLe~r~ 88 (92)
T 3vp9_A 28 QEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKM---KDAYEEEIKHLKLGLEQRD 88 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHcC
Confidence 34444444443 777778888888888888777766665443 3456777777777776543
No 126
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=69.38 E-value=18 Score=24.67 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
+..++.+...|..++..+..++..|..++..+...
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555555555443
No 127
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.38 E-value=33 Score=25.63 Aligned_cols=38 Identities=11% Similarity=0.296 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.+.....+...+..++..+..+...++.++..+...+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666777777777777777777666665
No 128
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=69.28 E-value=10 Score=25.19 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
.+++.+..++..|+.+++.+.+++.++...|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555666666666666666666665554
No 129
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=68.78 E-value=89 Score=30.37 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=16.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 85 TAEEWKRRYEKEKEKSSRYKGKLEKLELELSRW 117 (290)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~ 117 (290)
+...+...+.+. .+.+...|..|+.++.++
T Consensus 47 SGCrLQglLdkq---ErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 47 SGCRMKGLIDEV---NQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp CHHHHHHHHHHH---HHHHHHHHHHHHHHHTHH
T ss_pred cccchhhhHHhh---cCcHHHHHHHHHHHHHHH
Confidence 455555555443 245556666666665544
No 130
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=68.61 E-value=28 Score=33.16 Aligned_cols=84 Identities=18% Similarity=0.217 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+.++...+..++++...+.|..++.+.+++..- .+.+.+..+...+..++..++++.++++.++.++.
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKG-----------EPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC-----------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555544432210 22345566677788888888888888888888888
Q ss_pred hhhhhhhhccCCCCc
Q psy5721 253 RTLLNFFRQSSPKGT 267 (290)
Q Consensus 253 ~~l~~~~~~~~~~~~ 267 (290)
..|=++.-.+-|-|.
T Consensus 104 ~~ipN~~~~~vP~g~ 118 (455)
T 2dq0_A 104 WRLPNITHPSVPVGK 118 (455)
T ss_dssp TTSCCCCCTTSCCCS
T ss_pred HhCCCCCCccCCCCC
Confidence 888888888888764
No 131
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.46 E-value=19 Score=26.52 Aligned_cols=34 Identities=24% Similarity=0.312 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~ 257 (290)
+.+...|..||..++.++..|..++..+...|..
T Consensus 42 ~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 42 QHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555554443
No 132
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=68.10 E-value=35 Score=30.65 Aligned_cols=57 Identities=16% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCC-CCcchhhhhhcc
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSP-KGTLLYNHYLLG 276 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~-~~~~~~~~~~~~ 276 (290)
+.+..+.++...+.++++++..++..+.+++....++.... .-+| .|.+...+.-.|
T Consensus 116 ~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~-i~AP~~G~V~~~~~~~G 173 (369)
T 4dk0_A 116 TLNTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTK-ITSPIDGTVISTPVSEG 173 (369)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS-CCCSCCSCCCBCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCE-EECCCCeEEEEeeCCCC
Confidence 34445555666666667777777777777777766665443 3334 444444444333
No 133
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=68.06 E-value=70 Score=29.74 Aligned_cols=30 Identities=13% Similarity=0.244 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 87 ~~~~~~~~~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
..++..+.+. .+.++..|..|+..|..+..
T Consensus 52 CrLqg~Ldk~---er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 52 CRMKGLIDEV---DQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred chHHHHHHHh---hhhHHHHHHHHHHHHHHHHH
Confidence 3444444433 26677777777777776543
No 134
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=67.97 E-value=53 Score=27.53 Aligned_cols=47 Identities=26% Similarity=0.257 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT 214 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~ 214 (290)
......+..+...|.++|+.++.+|.++...+..++.+....+...+
T Consensus 19 d~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~ 65 (190)
T 4emc_A 19 DLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTS 65 (190)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 33456778888999999999999999988888888888765554443
No 135
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=67.30 E-value=20 Score=31.98 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT---TARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~---~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+..+..++.++......+......+...+..+...+.... ....+.+..+.++...+.++..++.+++..+.+++..
T Consensus 68 ~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 68 ENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333221 1134444555555556666666666666666666665
Q ss_pred Hhhhhhh
Q psy5721 252 TRTLLNF 258 (290)
Q Consensus 252 ~~~l~~~ 258 (290)
...+...
T Consensus 148 ~~~l~~~ 154 (341)
T 3fpp_A 148 KTNLDYT 154 (341)
T ss_dssp TTTTTSS
T ss_pred HHhhhCC
Confidence 5555443
No 136
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=66.96 E-value=23 Score=22.90 Aligned_cols=42 Identities=26% Similarity=0.353 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.++++..++..++.++.++.+|.+|..+....++.=-..||
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888898888877776665444444
No 137
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=66.33 E-value=44 Score=25.97 Aligned_cols=87 Identities=13% Similarity=0.281 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE------MTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~e------l~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
..-+..+++..+..+...+.+..+..........+..+... -..+...+..++...++|+..+.....-+.++.
T Consensus 23 ~~E~qry~~eka~AE~A~~~La~~~~l~~~i~er~~~i~~~~~~~~yk~~y~~l~k~Y~~~~keLd~~ik~qekiIdnFE 102 (119)
T 3etw_A 23 NQEEARFNEERAQADAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFE 102 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555544444333333333221 113444456677788888888888888888888
Q ss_pred hccCCCCcchhhh
Q psy5721 260 RQSSPKGTLLYNH 272 (290)
Q Consensus 260 ~~~~~~~~~~~~~ 272 (290)
+-.+-++|=+-.|
T Consensus 103 ~ik~lr~gn~~~~ 115 (119)
T 3etw_A 103 KIQALRAGNLEHH 115 (119)
T ss_dssp HHHHHHHTTC---
T ss_pred HHHHHHcCCcccc
Confidence 8888777766555
No 138
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=65.98 E-value=39 Score=25.18 Aligned_cols=45 Identities=20% Similarity=0.169 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 200 EKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
.-|+.++.-.+.....-+..-+++.++...|+.++..+..++..|
T Consensus 43 ~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L 87 (94)
T 3jsv_C 43 PVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKL 87 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 334445544444444444445555555555555555555444443
No 139
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.72 E-value=96 Score=29.64 Aligned_cols=57 Identities=9% Similarity=0.094 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ 232 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~ 232 (290)
..+..|...+++.........+.+..++..+...+..+......+..+..++++.+.
T Consensus 100 ~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~ 156 (464)
T 1m1j_B 100 PVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYN 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHH
Confidence 344444444444433332323334444444444444444444444444444444443
No 140
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=65.34 E-value=24 Score=33.26 Aligned_cols=82 Identities=23% Similarity=0.214 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+.++...+..++++...+.|..++.+.+ + ...+.+.+..+...+..++..++++.++++.++.++.
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~-~------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPK-A------------PPEEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS-S------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555544444432 0 0123345566677777788888888888888888888
Q ss_pred hhhhhhhhccCCCCc
Q psy5721 253 RTLLNFFRQSSPKGT 267 (290)
Q Consensus 253 ~~l~~~~~~~~~~~~ 267 (290)
..|=++.-.+-|-|.
T Consensus 99 ~~ipN~~~~~vp~g~ 113 (421)
T 1ses_A 99 LQVPLPPWPGAPVGG 113 (421)
T ss_dssp TTCCCCCCTTSCSSS
T ss_pred HhCCCCCCCCCCCCC
Confidence 888888777777663
No 141
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=64.82 E-value=6.3 Score=31.48 Aligned_cols=39 Identities=18% Similarity=0.362 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL 256 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~ 256 (290)
.+...+..++..-+..-..++.+.+.+.++|+++.+.|-
T Consensus 46 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLF 84 (135)
T 2e7s_A 46 DEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLF 84 (135)
T ss_dssp HHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334443333333335566666667777777766553
No 142
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=64.52 E-value=36 Score=24.25 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 208 ~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
+.++++..++..++.|+.++.+|.+|..+...+++.--..||.....+.+-
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 356677778888888899999999998887776666666666555544433
No 143
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=64.36 E-value=1e+02 Score=29.59 Aligned_cols=38 Identities=16% Similarity=0.235 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
-..++..++.++...+.++.+++++...+..+|.++..
T Consensus 71 Y~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 71 YQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555556666666666777777777777777776555
No 144
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=63.96 E-value=12 Score=26.14 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
.+.+..|+..|.+++.+|..++..+.++..-+
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34667777777888888877776666665433
No 145
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=63.96 E-value=31 Score=23.43 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
....+..++..++.++..||.|+..+
T Consensus 35 VN~~ls~Elr~mQ~~lq~LQsen~~L 60 (63)
T 2w6a_A 35 VNSSLSDELRKLQREIHKLQAENLQL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhhhHHHHHHHHHHHHHHhhhhhh
Confidence 33444444555555555555555443
No 146
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=63.27 E-value=58 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 188 KDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQ 224 (290)
Q Consensus 188 kd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~ 224 (290)
...|+....+.+.-|..=...+++.+...+...+.++
T Consensus 91 L~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK 127 (152)
T 4fla_A 91 LAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYK 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444333333
No 147
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=63.24 E-value=40 Score=24.45 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..|+.++.....+-..+.-.+..++....+.+.++..-...-...+.++..+...++.+.=-.-+|+.+++-+.
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~ 76 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555554433333334444455555544444444444444444433
No 148
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=62.68 E-value=58 Score=26.09 Aligned_cols=79 Identities=13% Similarity=0.192 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
|...-..-+..|..+...+...+....+-+.++....+.+..++.++.+....++.+...+.+|..+|.-...+|-.+.
T Consensus 43 lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE 121 (147)
T 2b9c_A 43 IESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3333344455666777777777777777777777777888888888888888888888888888888877776665554
No 149
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=62.06 E-value=46 Score=24.69 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy5721 235 ESAKEEVKEVLQALEEP 251 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~ 251 (290)
+.+++|+..|..+|+..
T Consensus 71 q~YEeEI~rLr~eLe~r 87 (92)
T 3vp9_A 71 DAYEEEIKHLKLGLEQR 87 (92)
T ss_dssp HHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 44555666666665544
No 150
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=62.04 E-value=3.5 Score=36.39 Aligned_cols=35 Identities=9% Similarity=0.229 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.++..+..++..|..++..+++++..|+.+++.+
T Consensus 60 ~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 60 EARIDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444443
No 151
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.94 E-value=13 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q 246 (290)
++.....++.+...|..++..+..++..|.+
T Consensus 27 Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 27 LEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 152
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.95 E-value=27 Score=25.06 Aligned_cols=31 Identities=23% Similarity=0.328 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.....|..||..++.++..|..++..+...|
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544433
No 153
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=57.91 E-value=48 Score=23.87 Aligned_cols=29 Identities=31% Similarity=0.531 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 176 EERERLYQQLDEKDEEINQQSQYAEKLKE 204 (290)
Q Consensus 176 e~~~~L~~~L~ekd~ei~~~~~~~~klk~ 204 (290)
++..+|+..+..++.+|+.+......|+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~e 62 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAE 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888776666555543
No 154
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=57.89 E-value=73 Score=25.67 Aligned_cols=65 Identities=12% Similarity=0.194 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 194 QQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 194 ~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.+...+..|..++.+....+..++.-...++..+......+++++.....+.+--.++...+..+
T Consensus 83 ~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 83 LLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44455666777777777777777777777777777777777777776666665555555544433
No 155
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=57.52 E-value=62 Score=24.78 Aligned_cols=25 Identities=12% Similarity=0.125 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.-+....+++.++.+|+.+|-+...
T Consensus 66 ~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 66 DREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666655544
No 156
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.41 E-value=89 Score=30.09 Aligned_cols=33 Identities=3% Similarity=0.044 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
+...+..+...++++++.++.++.++...+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888888888888887654
No 157
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=57.21 E-value=23 Score=21.58 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 200 EKLKEQIMEQEELITTARRDYE 221 (290)
Q Consensus 200 ~klk~ql~~qee~~~~~~~e~~ 221 (290)
++|-..+....+.++.++.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~ 31 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENK 31 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444444444443333
No 158
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=57.12 E-value=55 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.095 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQ 194 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~ 194 (290)
..|-++...|+++-...+.+|..
T Consensus 19 AsyIdKVR~LEqqN~~Le~~i~~ 41 (93)
T 3s4r_A 19 ANLIDKVRFLEQQNKILLAELEQ 41 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555543
No 159
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.79 E-value=54 Score=23.82 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
.++..|...+..++.++..+++++.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333
No 160
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.69 E-value=1.3e+02 Score=27.91 Aligned_cols=15 Identities=33% Similarity=0.204 Sum_probs=6.0
Q ss_pred eCCCCCChHhhhhhh
Q psy5721 51 CSPASFNESETKSTL 65 (290)
Q Consensus 51 vsp~~~~~~EtlstL 65 (290)
|+....+-+....-|
T Consensus 280 I~~~sk~~eaA~~Fi 294 (471)
T 3mq9_A 280 INAASPNKELAKEFL 294 (471)
T ss_dssp EBSSCSCHHHHHHHH
T ss_pred EECCCCCHHHHHHHH
Confidence 333333444444444
No 161
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=55.56 E-value=23 Score=33.31 Aligned_cols=62 Identities=16% Similarity=0.156 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccC
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~ 263 (290)
|+.++.+.++....+.++++.++.++..+..++...+.+-+.|..++.++.-++-.+-|.--
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP 69 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRP 69 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 33344444444444444555555555556666666667777888888888877777766543
No 162
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=54.74 E-value=56 Score=23.44 Aligned_cols=67 Identities=12% Similarity=0.200 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
+.+..++|+..++.+.-.++++.+-+.....--.++. ..-+..-+.+..+++.++.+++.+|-+...
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN--K~~~~~R~~~V~~lq~Ki~elkrqlAd~va 73 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN--KSTLQSRRAAVSALETKLGELKRELADLIA 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555544443333321111111 112333444556666666666666655543
No 163
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=54.65 E-value=24 Score=26.46 Aligned_cols=19 Identities=5% Similarity=0.104 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhHHHhhh
Q psy5721 237 AKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 237 ~~~e~kel~q~LeE~~~~l 255 (290)
+..+++.+..+|+.++..+
T Consensus 72 ~~~klr~Yk~dL~~lk~el 90 (102)
T 1vcs_A 72 YSNRMRSYKQEMGKLETDF 90 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 164
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=53.86 E-value=72 Score=24.43 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM-------TRLTQENESAK 238 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el-------~~lq~E~~~~~ 238 (290)
+.......+...+..+...-....-++......++.++.+..+.-.....++.++..+...+ ..|+.++++++
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~ 96 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ 96 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence 34455556666655555555555555555555555555554433333333333333333322 23444455555
Q ss_pred HHHHHHH
Q psy5721 239 EEVKEVL 245 (290)
Q Consensus 239 ~e~kel~ 245 (290)
+++.=+.
T Consensus 97 eEl~FLK 103 (119)
T 3ol1_A 97 EEIAFLK 103 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544433
No 165
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=53.77 E-value=59 Score=23.35 Aligned_cols=19 Identities=16% Similarity=0.363 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYA 199 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~ 199 (290)
++..+.....|+..+.+.-
T Consensus 16 l~E~~~q~qaEl~sLrrT~ 34 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTE 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 3333444444444443333
No 166
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=53.74 E-value=73 Score=26.99 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 199 AEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241 (290)
Q Consensus 199 ~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~ 241 (290)
..+|..++...++.++.++.+++.+.+-....|.-...+++=.
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444455555555555554444444444444443333
No 167
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=53.70 E-value=12 Score=36.92 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 236 SAKEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
.+++++...+.++++.+..|.+.-..+
T Consensus 437 ~~~~~~~~a~~~~~~~~~~l~~~~~~~ 463 (575)
T 2i1j_A 437 RLQEEVEDARRKQDEAAAALLAATTPQ 463 (575)
T ss_dssp -----CHHHHHHHHHHHHHHHTTSCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 334444444555555555555544433
No 168
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=52.93 E-value=58 Score=23.01 Aligned_cols=48 Identities=17% Similarity=0.273 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 202 LKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 202 lk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
|++++...+..+...+.+-..++.++.++...++..=.++.++.+.|-
T Consensus 19 Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 19 LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 333333344444444444444555555555555555555555555554
No 169
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=52.90 E-value=47 Score=21.94 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel 244 (290)
.+.+...+..+...+....+.+.++
T Consensus 28 ~~~~k~~~~~~~~~l~~~~~~I~~~ 52 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKK 52 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444443
No 170
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=52.55 E-value=58 Score=22.91 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKE 243 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~ke 243 (290)
..+.+..++-.+--|+.-+.++...
T Consensus 47 d~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 47 NTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 3333333333344444444443333
No 171
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=52.21 E-value=80 Score=24.43 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENE 235 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~ 235 (290)
+...+.|..+++.|...+... .......+..|+.++...+..++..+...+....+...|..+++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~ 78 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELD 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666554333 22223444455555555555444444444444444444444444
No 172
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=52.02 E-value=71 Score=23.80 Aligned_cols=66 Identities=11% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.+...+|+..++.+.-.++++.+-+.....--.++. ..-+.+-+.+..+++.++.+|+.+|-+...
T Consensus 8 ~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN--k~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 8 KEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN--KSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555554444444433333221111111 112334445566666666666666666554
No 173
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=51.54 E-value=28 Score=21.01 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
+.+...+.+++.+.++|..++++++
T Consensus 7 rKn~a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 7 RKNDTHQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhHhhHHHHHHHHHHHHHHHH
Confidence 3344444444445555544444443
No 174
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=51.43 E-value=44 Score=23.85 Aligned_cols=18 Identities=11% Similarity=0.259 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy5721 231 TQENESAKEEVKEVLQAL 248 (290)
Q Consensus 231 q~E~~~~~~e~kel~q~L 248 (290)
+.+.+.++.++..|.+.|
T Consensus 60 ~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 60 VHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 175
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=49.87 E-value=58 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 206 IMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 206 l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
+...+.++..+-+-+..+..++..+|.++..+..++.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~ 58 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENL 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhh
Confidence 3333444444444444444555555555444444443
No 176
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=49.59 E-value=47 Score=21.81 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
.++.+.+++..+.+|..++.+-+.+.+.+.+.|+..
T Consensus 10 AERsV~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777766543
No 177
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=49.49 E-value=15 Score=24.46 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.|+.+...|..+|..+..++..|.+.
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555554444443
No 178
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=49.47 E-value=41 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 230 LTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~L 248 (290)
++.+.+.++.++..|.+.|
T Consensus 59 l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 59 HQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 179
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.41 E-value=46 Score=20.84 Aligned_cols=42 Identities=17% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el 227 (290)
.+.+.+...++.+.+.++++....+..++-+++++..+..++
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 445566667777777777777777777777666666665443
No 180
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=49.20 E-value=24 Score=19.71 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 95 KEKEKSSRYKGKLEKLELELSRW 117 (290)
Q Consensus 95 ~~~~~~~~l~~~i~~L~~el~~~ 117 (290)
.++.++..|+.+|+.|+.++..+
T Consensus 4 rlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 4 RLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHh
Confidence 45567788888899888887643
No 181
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=47.85 E-value=51 Score=24.34 Aligned_cols=15 Identities=20% Similarity=0.512 Sum_probs=6.5
Q ss_pred cccHHHHHHHHHHHH
Q psy5721 165 SLSNEERQKLEEERE 179 (290)
Q Consensus 165 ~~~~~e~~~l~e~~~ 179 (290)
.++.++...+.....
T Consensus 17 gls~eev~~lKq~RR 31 (90)
T 2wt7_B 17 GFTKDEVIRLKQKRR 31 (90)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 344444444444333
No 182
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=47.78 E-value=72 Score=26.42 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q psy5721 106 KLEKLELEL 114 (290)
Q Consensus 106 ~i~~L~~el 114 (290)
.+..|+..|
T Consensus 69 Yv~el~kAl 77 (175)
T 3mud_A 69 YVGELRKAL 77 (175)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 183
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=47.18 E-value=88 Score=23.45 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
.+..|+.++.+|..||+.+.++..
T Consensus 66 ~v~eLe~everL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555443
No 184
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=46.77 E-value=79 Score=22.77 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5721 187 EKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 187 ekd~ei~~~~~~~~klk~ql 206 (290)
..+..|..+...+..+..+|
T Consensus 26 ~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 185
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.25 E-value=53 Score=20.69 Aligned_cols=30 Identities=37% Similarity=0.424 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 181 LYQQLDEKDEEINQQSQYAEKLKEQIMEQE 210 (290)
Q Consensus 181 L~~~L~ekd~ei~~~~~~~~klk~ql~~qe 210 (290)
|-++++.-|.||...++.+.+++.++.+.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555444443
No 186
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=46.16 E-value=1e+02 Score=23.84 Aligned_cols=78 Identities=15% Similarity=0.141 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.-|+.+|..-.+-+..-+.......+....... ++.++...-+.++..|+-|+..+++++++...+++++......+
T Consensus 28 ~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~---SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~ 104 (121)
T 3mq7_A 28 HLLQQELTEAQKGFQDVEAQAATANHTVMALMA---SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVL 104 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Confidence 345555544444443333333334333333333 33333333355566666677777777766666666666655544
Q ss_pred h
Q psy5721 259 F 259 (290)
Q Consensus 259 ~ 259 (290)
.
T Consensus 105 ~ 105 (121)
T 3mq7_A 105 S 105 (121)
T ss_dssp H
T ss_pred h
Confidence 3
No 187
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.96 E-value=77 Score=22.93 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHh
Q psy5721 235 ESAKEEVKEVLQALE 249 (290)
Q Consensus 235 ~~~~~e~kel~q~Le 249 (290)
+.++.++..|...|+
T Consensus 69 ~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 69 DLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 188
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.89 E-value=34 Score=19.77 Aligned_cols=25 Identities=16% Similarity=0.323 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q psy5721 95 KEKEKSSRYKGKLEKLELELSRWRN 119 (290)
Q Consensus 95 ~~~~~~~~l~~~i~~L~~el~~~~~ 119 (290)
.++.++..|+.+|+.|+-|+..++.
T Consensus 6 alkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 6 ALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3455666677777777777665554
No 189
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=45.20 E-value=44 Score=32.77 Aligned_cols=56 Identities=27% Similarity=0.357 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 197 QYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 197 ~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..-+.|..++.+.+..+..+..+.+.-..+..+++.++..+++...+-+++|.+..
T Consensus 405 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~~~~~l~~~~ 460 (575)
T 2i1j_A 405 AERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAAT 460 (575)
T ss_dssp -------------------------------------CHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444555566666666666666666677777788877777777666666665433
No 190
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.17 E-value=92 Score=29.92 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 185 L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
+-+.|++-.++...++.++.+....-..+..+.+. .++...+..+...++++++.++.++.++...+.++...
T Consensus 35 ~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~----~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 35 IIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKA----KEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444433333332221 12356788888888888888888888888887765443
No 191
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=44.84 E-value=78 Score=28.76 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q psy5721 234 NESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 234 ~~~~~~e~kel~q~LeE~~ 252 (290)
++..+..+.+|++++.++.
T Consensus 35 l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 35 WRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444443333
No 192
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=44.30 E-value=28 Score=30.57 Aligned_cols=52 Identities=27% Similarity=0.266 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcchh
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY 270 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~~~ 270 (290)
.+..++.++..+...|+.+.+.++.+.+++..++..+..++..++--|+++-
T Consensus 55 ~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvle 106 (251)
T 3m9b_A 55 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLA 106 (251)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEE
Confidence 3445666666666666666666666666666666666666655555555444
No 193
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=44.25 E-value=85 Score=22.48 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEP 251 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~ 251 (290)
+.+++.|-......+..|+...+|+
T Consensus 48 i~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 48 VTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444433
No 194
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.07 E-value=1.1e+02 Score=28.89 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+...+..+...++++++.++.++.++...+.++.
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888899999999999998888887654
No 195
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=43.36 E-value=1.5e+02 Score=25.13 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 175 EEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 175 ~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
.++...|+..+..++++|+.++.++..|+.-....+.
T Consensus 114 LeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~ 150 (209)
T 2wvr_A 114 LKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQY 150 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999999988888888765444333
No 196
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=43.35 E-value=1.5e+02 Score=25.15 Aligned_cols=74 Identities=18% Similarity=0.223 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 186 DEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 186 ~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
++-|=.+...+..+..++.++.+.+..+...+..+..++-.+.....+...++.++..+...+...+..+-.++
T Consensus 73 DEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 73 DEQDVELADHEARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccceeeecchhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 34444555666777777777778887777777777766666666555666666666666665555554444444
No 197
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=43.03 E-value=98 Score=22.79 Aligned_cols=7 Identities=14% Similarity=0.605 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy5721 238 KEEVKEV 244 (290)
Q Consensus 238 ~~e~kel 244 (290)
+..+.++
T Consensus 45 ~~~i~el 51 (101)
T 1d7m_A 45 EKRLREL 51 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 198
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=42.74 E-value=1.6e+02 Score=26.24 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
+.+-++..++.+.++.|...++.....+.-.++|+..|+.
T Consensus 35 ~~~~~~~~~~~~~~~~k~~a~~af~~~~~~f~~q~~~qe~ 74 (302)
T 2y3a_B 35 DQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEK 74 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777888888888888887777766666666665553
No 199
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=42.73 E-value=1e+02 Score=22.92 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEINQQSQYAEKLKEQI 206 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei~~~~~~~~klk~ql 206 (290)
+..+-++-|.+.+.+.+.-.+.+..|+.-|
T Consensus 26 qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL 55 (99)
T 3ni0_A 26 QLTRTQDSLLQAETQANSCNLTVVTLQESL 55 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555554443
No 200
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.47 E-value=1.1e+02 Score=23.83 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEKDEEINQ 194 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ekd~ei~~ 194 (290)
..+...+..+-..|-.+.+.|..
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~ 75 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINK 75 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666555555555543
No 201
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=42.47 E-value=2.2e+02 Score=26.65 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
..+..|+..+...+..+..|++++.++.
T Consensus 105 ~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 105 NTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 202
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=42.17 E-value=1.1e+02 Score=23.10 Aligned_cols=42 Identities=12% Similarity=0.193 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.+..+.+++..-..++..++..++...+....+...+.++..
T Consensus 55 ~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 55 VLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444433
No 203
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=42.17 E-value=28 Score=32.80 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+.++...+..++++...+.|..++.+.+++..- .+.+.+..+...+..++..++++.++++.++.++.
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREG-----------KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC-----------SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555555555444444322110 12234455667777888888888888888898888
Q ss_pred hhhhhhhhccCCCCc
Q psy5721 253 RTLLNFFRQSSPKGT 267 (290)
Q Consensus 253 ~~l~~~~~~~~~~~~ 267 (290)
..|=++.-.+-|-|.
T Consensus 103 ~~ipN~~~~~vp~g~ 117 (425)
T 2dq3_A 103 LWIPNLPHPSVPVGE 117 (425)
T ss_dssp HTSCCCCCTTSCCCS
T ss_pred HhCCCCCCCCCCCCC
Confidence 888888877777764
No 204
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=41.84 E-value=1.6e+02 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.193 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE 250 (290)
+......+.++..++.++..++.++...+..|+.
T Consensus 121 ~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~ 154 (369)
T 4dk0_A 121 KATLNNAKAEMDVVQENIKQAEIEVNTAETNLGY 154 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444445555555555555555555555543
No 205
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=41.84 E-value=2.2e+02 Score=26.47 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 172 QKLEEERERLYQQLDEK 188 (290)
Q Consensus 172 ~~l~e~~~~L~~~L~ek 188 (290)
+.+..+++.|.+.|.+.
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 56667777777766554
No 206
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.19 E-value=2.2e+02 Score=26.24 Aligned_cols=88 Identities=18% Similarity=0.247 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL-----------------------ITTARRDYEQLQGEMTR 229 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~-----------------------~~~~~~e~~~l~~el~~ 229 (290)
.+-+...+..+.++.|...++.....+.-.++++..++.- ...+...++.+.....+
T Consensus 144 ~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~ 223 (373)
T 3hhm_B 144 RLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRR 223 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3334555666667777766666665555555555444421 12233444445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 230 LTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
|+.++.+....++++..++.-++-.|+.+-+
T Consensus 224 l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k 254 (373)
T 3hhm_B 224 LEEDLKKQAAEYREIDKRMNSIKPDLIQLRK 254 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHH
Confidence 6777777777777777777777766666655
No 207
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=40.74 E-value=1.2e+02 Score=22.96 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 219 e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
++..++..+...+.+...+...+..+..+.+
T Consensus 69 el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~ 99 (107)
T 2no2_A 69 ELQVLQGSLETSAQSEANWAAEFAELEKERD 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444443333
No 208
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=40.27 E-value=99 Score=28.93 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
++...+..+...++++++.++.++.++...+..+.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888888888888888888887776644
No 209
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=39.85 E-value=1.1e+02 Score=22.48 Aligned_cols=34 Identities=26% Similarity=0.293 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhh
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l 255 (290)
.|+.+...|+.+.+.+..++..+..+++..+..+
T Consensus 52 ~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 52 HLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 210
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=39.74 E-value=2.8e+02 Score=27.13 Aligned_cols=15 Identities=0% Similarity=-0.040 Sum_probs=6.7
Q ss_pred hHHHhhhhhhhhccC
Q psy5721 249 EEPTRTLLNFFRQSS 263 (290)
Q Consensus 249 eE~~~~l~~~~~~~~ 263 (290)
+.+...|.+++++.+
T Consensus 570 ~~~~~ei~~l~~~~~ 584 (592)
T 1f5n_A 570 RIMKNEIQDLQTKMR 584 (592)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhc
Confidence 334445555555433
No 211
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=39.11 E-value=1.6e+02 Score=24.14 Aligned_cols=11 Identities=18% Similarity=0.305 Sum_probs=5.1
Q ss_pred hhhhhhhhccC
Q psy5721 253 RTLLNFFRQSS 263 (290)
Q Consensus 253 ~~l~~~~~~~~ 263 (290)
.++..+.|+--
T Consensus 152 ~s~~~~~~~~k 162 (169)
T 3k29_A 152 GQLLHQLHKQK 162 (169)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHH
Confidence 34444555443
No 212
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=38.92 E-value=1.1e+02 Score=22.24 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNF 258 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~ 258 (290)
.-...++..+..+..+...+......++..++++...|-.+
T Consensus 65 e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 65 ELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666667777777777777777766665443
No 213
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.50 E-value=20 Score=19.96 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q psy5721 229 RLTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE 250 (290)
.|..|++++++.+.-|.|.+-.
T Consensus 4 alefendaleqkiaalkqkias 25 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIAS 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHH
Confidence 3455666666666655555433
No 214
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=38.27 E-value=1.1e+02 Score=22.16 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee 211 (290)
+...+++.|..-...+..+|+.-.++|..++..+.+.++.+...+.
T Consensus 34 frqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 34 FRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 215
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=37.78 E-value=1.4e+02 Score=23.85 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+.++.....+..+..++..++.++..+..++.
T Consensus 73 rdleasr~akk~~ea~la~l~~~~~~LeAE~a 104 (146)
T 2xnx_M 73 REQEINRNLLGNAKLELDQLSSEKEQLTIEKA 104 (146)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444444444444444444444433
No 216
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=37.63 E-value=1.3e+02 Score=22.67 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQEN 234 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~ 234 (290)
...|.-+++-..+.++.+...+..++++..+.-..+..+......++.++..++.++
T Consensus 25 Ksal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L 81 (103)
T 4h22_A 25 KTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEAL 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444544444444444444444444444444444443
No 217
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=37.30 E-value=2.6e+02 Score=26.09 Aligned_cols=44 Identities=0% Similarity=-0.058 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
+..++..++..+.....++..++..+..++..++.+...+..+.
T Consensus 89 ml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~ 132 (409)
T 1m1j_C 89 IIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLE 132 (409)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444444444444555555555555666666665555544
No 218
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=37.24 E-value=1.1e+02 Score=25.51 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5721 227 MTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~ 247 (290)
+.+|+.+++.++.+-.+++.+
T Consensus 161 n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 161 NEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 219
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.63 E-value=1.3e+02 Score=24.77 Aligned_cols=19 Identities=16% Similarity=0.361 Sum_probs=8.9
Q ss_pred cccHHHHHHHHHHHHHHHH
Q psy5721 165 SLSNEERQKLEEERERLYQ 183 (290)
Q Consensus 165 ~~~~~e~~~l~e~~~~L~~ 183 (290)
.++++.+.++.+-..+.+.
T Consensus 67 nLT~EQq~ql~~I~~e~r~ 85 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYT 85 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 3555555555544443333
No 220
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=36.51 E-value=1.4e+02 Score=23.93 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQ 194 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~ 194 (290)
.+...+..+-..|-.+.+.|..
T Consensus 54 ~f~~~~~ela~dli~kakqIe~ 75 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINK 75 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555565555555555543
No 221
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=36.24 E-value=1.8e+02 Score=23.88 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
...+..+......|...+.+....++++..++..++-.|+.+.+
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~qL~K 145 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRK 145 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34444555555666666666666777777777766666665554
No 222
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=35.80 E-value=1.2e+02 Score=21.76 Aligned_cols=30 Identities=7% Similarity=0.204 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 183 QQLDEKDEEINQQSQYAEKLKEQIMEQEEL 212 (290)
Q Consensus 183 ~~L~ekd~ei~~~~~~~~klk~ql~~qee~ 212 (290)
.++.+....|..+...+.+++.++..+-..
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ql~E 57 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQQLDE 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333
No 223
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=35.49 E-value=1.3e+02 Score=21.93 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~ 253 (290)
.....|+.+...|..+++.++.++..|.+-|-.+-.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 344445555555555555555555555555554444
No 224
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=34.16 E-value=3.3e+02 Score=26.29 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 166 ~~~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
++..+..+-+++.++.++.-+.+.- ++..+...++.+.+|.+-++.++...+.......-+..+..+++++ -
T Consensus 291 lt~~elkqrqeee~r~~qew~~~hp-~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~~~~~-------n 362 (551)
T 2b5u_A 291 LSPDQVKQRQDEENRRQQEWDATHP-VEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSELDAA-------N 362 (551)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh-------h
Confidence 4455555555555555554433322 2234444666666666555554444333332223333334444333 3
Q ss_pred HHHhHHHhhhhhhhhc
Q psy5721 246 QALEEPTRTLLNFFRQ 261 (290)
Q Consensus 246 q~LeE~~~~l~~~~~~ 261 (290)
..|.+..+...++.|.
T Consensus 363 ~~~~~~~~~~~~f~~~ 378 (551)
T 2b5u_A 363 KTLADAIAEIKQFNRF 378 (551)
T ss_dssp HHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHhhhhhhhh
Confidence 3334444455555443
No 225
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=33.75 E-value=1.4e+02 Score=22.06 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 225 GEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 225 ~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.++...-..++.++.++..++.-|.|+.
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444455555555555555543
No 226
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.68 E-value=2.7e+02 Score=26.59 Aligned_cols=77 Identities=9% Similarity=0.117 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------H------HH-HHHHHHHH----HHH-HHHHH
Q psy5721 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD-------------Y------EQ-LQGEMTRL----TQE-NESAK 238 (290)
Q Consensus 184 ~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e-------------~------~~-l~~el~~l----q~E-~~~~~ 238 (290)
.+-+.|++-..+...++.++.+....-+.+..+.+. + .. -.++...+ .++ ...++
T Consensus 38 ~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 117 (484)
T 3lss_A 38 AIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLS 117 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHHH
Confidence 344455555555555666666555555555443330 0 00 11234455 666 77788
Q ss_pred HHHHHHHHHHhHHHhhhhhhhh
Q psy5721 239 EEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 239 ~e~kel~q~LeE~~~~l~~~~~ 260 (290)
++++.++.++.++...+.++..
T Consensus 118 ~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 118 DQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877766543
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.87 E-value=69 Score=30.12 Aligned_cols=26 Identities=31% Similarity=0.418 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~ 245 (290)
.+.++.++..++.++...+++++.++
T Consensus 65 ~e~l~~~~~~~~~e~~~~~ee~~~l~ 90 (428)
T 4b4t_K 65 EDYIKDEQRHLKRELKRAQEEVKRIQ 90 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33344444455555555555554443
No 228
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=32.57 E-value=13 Score=22.87 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 222 QLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 222 ~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
.++.++..++.+++.+.+++..++.+
T Consensus 8 avKkKiq~lq~q~d~aee~~~~~~~~ 33 (37)
T 3azd_A 8 AVRRKIRSLQEQNYHLENEVARLKKL 33 (37)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 229
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.52 E-value=2.5e+02 Score=24.46 Aligned_cols=37 Identities=5% Similarity=0.063 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
++...+.++...+.++..++.+++.....+.....+.
T Consensus 115 ~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l 151 (341)
T 3fpp_A 115 DLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555555555666666666666666655555443
No 230
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=31.37 E-value=99 Score=19.45 Aligned_cols=17 Identities=6% Similarity=0.212 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy5721 231 TQENESAKEEVKEVLQA 247 (290)
Q Consensus 231 q~E~~~~~~e~kel~q~ 247 (290)
-+|.+..++++.+++..
T Consensus 15 drEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 15 DREITMVEQQISKLKKK 31 (42)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=30.98 E-value=1.1e+02 Score=29.97 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhHHHh
Q psy5721 235 ESAKEEVKEVLQALEEPTR 253 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~ 253 (290)
.++++.++.|.+.+++-..
T Consensus 522 ~~~~e~~~ql~~kme~~~~ 540 (592)
T 1f5n_A 522 RSYQEHLKQLTEKMENDRV 540 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 232
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=30.74 E-value=2.2e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
.|+.-++++.+-...|.+.|...++...++.|.
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERe 132 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKR 132 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555556666666666655555554
No 233
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=30.61 E-value=1.7e+02 Score=25.10 Aligned_cols=53 Identities=9% Similarity=0.186 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY 220 (290)
Q Consensus 168 ~~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~e~ 220 (290)
...+.-+..+.+.++..+......+.+...+...+..++.+.....+.+++..
T Consensus 163 e~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~ 215 (228)
T 3q0x_A 163 SVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQY 215 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666665555555555555555555555544444444444333
No 234
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=30.58 E-value=1.6e+02 Score=21.62 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhHHHhhhhhhhhc
Q psy5721 235 ESAKEEVKEVLQALEEPTRTLLNFFRQ 261 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~~~~l~~~~~~ 261 (290)
-++-..+..+.++++..+...+++.|+
T Consensus 61 iaLAa~l~~lH~~V~~~Ke~Yl~~rr~ 87 (93)
T 3t98_B 61 VALAAQLQSIHENVKVLKEQYLSYRKM 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666654
No 235
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=29.97 E-value=74 Score=17.53 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5721 96 EKEKSSRYKGKLEKLELELSR 116 (290)
Q Consensus 96 ~~~~~~~l~~~i~~L~~el~~ 116 (290)
++.++-.|+.++..|+.++..
T Consensus 5 lkdevgelkgevralkdevkd 25 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKD 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhHHHHHHHHHhc
Confidence 345566666666666666554
No 236
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=28.51 E-value=1.7e+02 Score=21.31 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5721 224 QGEMTRLTQENESAKEEVKEVLQALE 249 (290)
Q Consensus 224 ~~el~~lq~E~~~~~~e~kel~q~Le 249 (290)
+..+..|+.+++.+..+...+.-+++
T Consensus 55 e~~i~~Lr~~i~~~~~ek~~l~~e~d 80 (93)
T 3s4r_A 55 EEEMRELRRQVDQLTNDKARVEVERD 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333333333333
No 237
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.42 E-value=1.6e+02 Score=20.91 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 211 ELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 211 e~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
.....++.++..|..++..|..|+..+
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 238
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=27.59 E-value=1.7e+02 Score=20.85 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 216 ARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248 (290)
Q Consensus 216 ~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~L 248 (290)
+..+...+..++..++.-....+..+++++++|
T Consensus 42 Lt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 42 LTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554
No 239
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=26.79 E-value=37 Score=24.40 Aligned_cols=17 Identities=29% Similarity=0.229 Sum_probs=14.5
Q ss_pred hhHhHHHHHHHHHHcCC
Q psy5721 4 FACGALRNVISALADGN 20 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~~~ 20 (290)
-||++||+|+.-|-+..
T Consensus 32 LSLMvLGN~vTnlln~~ 48 (80)
T 2juz_A 32 LSLIALGNMASNLLTTS 48 (80)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 48999999999988754
No 240
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=26.28 E-value=2.2e+02 Score=21.74 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHhhhhhhh
Q psy5721 233 ENESAKEEVKEVLQALEEPTRTLLNFF 259 (290)
Q Consensus 233 E~~~~~~e~kel~q~LeE~~~~l~~~~ 259 (290)
-++.....+.-|+..|.+++.+|-+..
T Consensus 63 tl~~R~~~Vs~lq~KiaeLKrqLAd~v 89 (113)
T 4fi5_A 63 TLTDREGVAVSIQAKIDELKRQLADRI 89 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655544
No 241
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=26.09 E-value=89 Score=17.73 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhHH
Q psy5721 235 ESAKEEVKEVLQALEEP 251 (290)
Q Consensus 235 ~~~~~e~kel~q~LeE~ 251 (290)
.+++.+++.+....+|+
T Consensus 9 asleaenkqlkakveel 25 (31)
T 1p9i_A 9 ASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 242
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=25.85 E-value=2e+02 Score=21.24 Aligned_cols=69 Identities=14% Similarity=0.206 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ-----IMEQEELITTARRDYEQLQGEMTRLTQENESA 237 (290)
Q Consensus 169 ~e~~~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q-----l~~qee~~~~~~~e~~~l~~el~~lq~E~~~~ 237 (290)
..++.++.++..|...+.......+.+.++..-+.+. -..++..+......++.|+.++.+++.-+..+
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677777666655544444444444333321 12234445555555555555555555554444
No 243
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.89 E-value=2.1e+02 Score=21.08 Aligned_cols=17 Identities=6% Similarity=0.112 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy5721 236 SAKEEVKEVLQALEEPT 252 (290)
Q Consensus 236 ~~~~e~kel~q~LeE~~ 252 (290)
.+..+++.++.+|+.++
T Consensus 82 ~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 82 PMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445555555554443
No 244
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=24.84 E-value=1.8e+02 Score=22.27 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhhcc
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~ 262 (290)
++...+-+.......|++.++.++.+|...|++....+.++-+.+
T Consensus 4 ~e~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~ 48 (125)
T 1joc_A 4 DERRALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGREN 48 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 245
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.82 E-value=1.9e+02 Score=20.56 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVKEVLQA 247 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~kel~q~ 247 (290)
++.+..+...++.|+.+..+-...+...
T Consensus 39 vdELt~E~e~l~~El~s~~~~~~r~~~r 66 (77)
T 2w83_C 39 VDELTCEKDVLQGELEAVKQAKLKLEEK 66 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444433333333333
No 246
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.74 E-value=2.3e+02 Score=21.41 Aligned_cols=23 Identities=26% Similarity=0.182 Sum_probs=13.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHHH
Q psy5721 165 SLSNEERQKLEEERERLYQQLDE 187 (290)
Q Consensus 165 ~~~~~e~~~l~e~~~~L~~~L~e 187 (290)
.++-...+++++++...++||.-
T Consensus 31 ~~tM~~ieeLQ~Ei~~~E~QL~i 53 (107)
T 2k48_A 31 PFTMSTLQELQENITAHEQQLVT 53 (107)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555543
No 247
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=24.65 E-value=1.2e+02 Score=18.14 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5721 226 EMTRLTQENESAKEEVKEV 244 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel 244 (290)
+...|..+++.++.++..|
T Consensus 9 kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 9 KVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHH
Confidence 3333344444444444333
No 248
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=24.51 E-value=2.3e+02 Score=21.45 Aligned_cols=39 Identities=8% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 214 ~~~~~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.-+.+..+.++..+..++..+...++.+..+...++++.
T Consensus 91 ~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 91 ESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555566666666666666666666666666666554
No 249
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=24.49 E-value=36 Score=24.62 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.7
Q ss_pred hhHhHHHHHHHHHHcC
Q psy5721 4 FACGALRNVISALADG 19 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~~ 19 (290)
-||++||+|+.-|-+.
T Consensus 32 LSLMvLGNmvTNlln~ 47 (83)
T 2jrx_A 32 LSLMVLGNMVTNLINT 47 (83)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4899999999988763
No 250
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=24.32 E-value=37 Score=24.59 Aligned_cols=17 Identities=6% Similarity=0.081 Sum_probs=14.0
Q ss_pred hhHhHHHHHHHHHHcCC
Q psy5721 4 FACGALRNVISALADGN 20 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~~~ 20 (290)
-||++||+|+.-|-+..
T Consensus 32 LSLMvLGNmvTNlln~~ 48 (83)
T 2jpq_A 32 LTLMIAGNIATNVLNQR 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 48999999999887643
No 251
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=24.25 E-value=1.5e+02 Score=19.18 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 196 SQYAEKLKEQIMEQEELITTARRDYEQL 223 (290)
Q Consensus 196 ~~~~~klk~ql~~qee~~~~~~~e~~~l 223 (290)
++....|-.++.+.+..++..+++++++
T Consensus 10 Ke~n~~L~~kv~~Le~~c~~~eQEieRL 37 (48)
T 3vmx_A 10 KQINIQLATKIQHLEFSCSEKEQEIERL 37 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3333334344444444444444444433
No 252
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=24.13 E-value=37 Score=24.41 Aligned_cols=16 Identities=25% Similarity=0.326 Sum_probs=13.4
Q ss_pred hhHhHHHHHHHHHHcC
Q psy5721 4 FACGALRNVISALADG 19 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~~ 19 (290)
-||++||+|+.-|-+.
T Consensus 32 LSLMvLGN~vTnlln~ 47 (80)
T 2juw_A 32 LSLMALGNCVTHLLER 47 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4899999999988764
No 253
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=23.93 E-value=42 Score=23.90 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=13.4
Q ss_pred hhHhHHHHHHHHHHc
Q psy5721 4 FACGALRNVISALAD 18 (290)
Q Consensus 4 ~SL~~L~~vi~aL~~ 18 (290)
-||++||+|+.-+-+
T Consensus 32 LSLMvLGN~vTnlln 46 (76)
T 2jr2_A 32 LALMCLGNAVTNIIA 46 (76)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 489999999998887
No 254
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=23.85 E-value=2.3e+02 Score=21.17 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy5721 226 EMTRLTQENESAKEEVKEVL 245 (290)
Q Consensus 226 el~~lq~E~~~~~~e~kel~ 245 (290)
++..|..+++.++.++..|.
T Consensus 66 ~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 66 RVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 255
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=23.82 E-value=2.2e+02 Score=20.98 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 212 LITTARRDYEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 212 ~~~~~~~e~~~l~~el~~lq~E~~~~~~e~k 242 (290)
+++.+.+..+++.+++..+..++.+.+....
T Consensus 50 KWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~ 80 (93)
T 3sjb_C 50 KWTKNNRKLDSLDKEINNLKDEIQSENKAFQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444433
No 256
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=23.78 E-value=5e+02 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 179 ERLYQQLDEKDEEINQQSQYAEKLKEQ 205 (290)
Q Consensus 179 ~~L~~~L~ekd~ei~~~~~~~~klk~q 205 (290)
+..+.++++...|+++....+.+.++.
T Consensus 317 ~~Aer~~e~a~ael~~a~k~~a~~~er 343 (551)
T 2b5u_A 317 EAAERNYERARAELNQANEDVARNQER 343 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455554444444444443
No 257
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.36 E-value=2e+02 Score=20.32 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ 205 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~q 205 (290)
.-.+-+..|+........++..+......|+.+
T Consensus 44 kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~ 76 (80)
T 1nlw_A 44 KAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555544444444444444444444333
No 258
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.24 E-value=1.7e+02 Score=19.47 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy5721 177 ERERLYQQLDEKDEEI 192 (290)
Q Consensus 177 ~~~~L~~~L~ekd~ei 192 (290)
++..|..+..++|.||
T Consensus 26 kv~~Le~~c~e~eQEi 41 (58)
T 3a2a_A 26 KIQHLEFSCSEKEQEI 41 (58)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 259
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.78 E-value=50 Score=25.25 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 220 YEQLQGEMTRLTQENESAKEEVK 242 (290)
Q Consensus 220 ~~~l~~el~~lq~E~~~~~~e~k 242 (290)
.+.|..++.+|+.||.+++..++
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777777777776654
No 260
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=21.70 E-value=3.6e+02 Score=22.63 Aligned_cols=37 Identities=19% Similarity=0.181 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHhhhhhhhhccCCCCcc
Q psy5721 231 TQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTL 268 (290)
Q Consensus 231 q~E~~~~~~e~kel~q~LeE~~~~l~~~~~~~~~~~~~ 268 (290)
+.+++.++.++...+.+|+.....+... ..-+|-.|.
T Consensus 104 ~~~~~~a~a~l~~a~a~l~~a~~~l~~~-~I~AP~~G~ 140 (277)
T 2f1m_A 104 LADAQQANAAVTAAKAAVETARINLAYT-KVTSPISGR 140 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT-EECCSSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcC-EEECCCCeE
Confidence 3334444444444444555444444333 344444443
No 261
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=21.20 E-value=2.5e+02 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHH
Q psy5721 229 RLTQENESAKEEVKEVLQALEEPT 252 (290)
Q Consensus 229 ~lq~E~~~~~~e~kel~q~LeE~~ 252 (290)
.+...+..++.++..++.++..+.
T Consensus 71 ~~~~klr~Yk~dL~~lk~elk~~~ 94 (102)
T 1vcs_A 71 MYSNRMRSYKQEMGKLETDFKRSR 94 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555554443
No 262
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=20.89 E-value=2.5e+02 Score=20.41 Aligned_cols=28 Identities=11% Similarity=0.069 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhh
Q psy5721 227 MTRLTQENESAKEEVKEVLQALEEPTRT 254 (290)
Q Consensus 227 l~~lq~E~~~~~~e~kel~q~LeE~~~~ 254 (290)
......++......+..|+++|.++..+
T Consensus 58 ~~~V~~eL~~sn~kl~~L~~eL~eL~a~ 85 (86)
T 1cxz_B 58 LGPVELLLRGSSRRLDLLHQQLQELHAH 85 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3445666677777777777777777654
No 263
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=20.85 E-value=4.8e+02 Score=23.81 Aligned_cols=86 Identities=16% Similarity=0.256 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARR----------------DYEQLQGEMTRLTQENESAKEEV 241 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~~~~~----------------e~~~l~~el~~lq~E~~~~~~e~ 241 (290)
...|+........+|....+.++-..+.+.-.++.+...++ +...+..-...|+.-++++.+-.
T Consensus 142 ~~~~~~~~~~~~~e~~~k~~a~~af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~ 221 (373)
T 3hhm_B 142 YDRLYEEYTRTSQEIQMKRTAIEAFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSR 221 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 33444444444455555455555555555544554433332 23344444556666667777777
Q ss_pred HHHHHHHhHHHhhhhhhhhccC
Q psy5721 242 KEVLQALEEPTRTLLNFFRQSS 263 (290)
Q Consensus 242 kel~q~LeE~~~~l~~~~~~~~ 263 (290)
..|++.|...++...++.|+-.
T Consensus 222 ~~l~~~~~~~~~~~~~~~~~~~ 243 (373)
T 3hhm_B 222 RRLEEDLKKQAAEYREIDKRMN 243 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 7777888877777777776654
No 264
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=20.83 E-value=2.4e+02 Score=20.27 Aligned_cols=24 Identities=8% Similarity=0.255 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 217 RRDYEQLQGEMTRLTQENESAKEE 240 (290)
Q Consensus 217 ~~e~~~l~~el~~lq~E~~~~~~e 240 (290)
.+.+..-..++..|+.....+-+|
T Consensus 61 ~~~L~qAraDL~~l~r~~av~g~E 84 (90)
T 4b6x_A 61 SQQLRHARADLADLQRRFAVLRNE 84 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333333344444455554444443
No 265
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=20.73 E-value=3.8e+02 Score=22.54 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q psy5721 230 LTQENESAKEEVKEVLQALEE 250 (290)
Q Consensus 230 lq~E~~~~~~e~kel~q~LeE 250 (290)
...=+...|.+++++++.|..
T Consensus 180 F~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 180 FILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 333445666666666655543
No 266
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=20.72 E-value=5.6e+02 Score=24.53 Aligned_cols=43 Identities=7% Similarity=0.111 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhhhhhh
Q psy5721 218 RDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260 (290)
Q Consensus 218 ~e~~~l~~el~~lq~E~~~~~~e~kel~q~LeE~~~~l~~~~~ 260 (290)
.....++.++...+.+...+..+++.+++++..-+..+-++..
T Consensus 66 ~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~~~~k~lae~ek 108 (497)
T 3iox_A 66 AKLAKYQADLAKYQKDLADYPVKLKAYEDEQTSIKAALAELEK 108 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666677777777666666666543
No 267
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=20.39 E-value=5.7e+02 Score=24.49 Aligned_cols=30 Identities=13% Similarity=0.253 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 178 RERLYQQLDEKDEEINQQSQYAEKLKEQIM 207 (290)
Q Consensus 178 ~~~L~~~L~ekd~ei~~~~~~~~klk~ql~ 207 (290)
...|++-+++...+|.+...-+..+..++-
T Consensus 351 ~~~lrQRlddArNEItsaeSaInslqaqvS 380 (602)
T 1cii_A 351 WDKLRQRLLDARNKITSAESAVNSARNNLS 380 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888888777776666655543
No 268
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=20.25 E-value=4.1e+02 Score=22.72 Aligned_cols=42 Identities=10% Similarity=0.169 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5721 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT 214 (290)
Q Consensus 173 ~l~e~~~~L~~~L~ekd~ei~~~~~~~~klk~ql~~qee~~~ 214 (290)
.+.++...|.+.|++-..|++.+...++..++++.+..+...
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~ 216 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYD 216 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555554444443
Done!