RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5721
(290 letters)
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 179 bits (455), Expect = 2e-57
Identities = 83/112 (74%), Positives = 99/112 (88%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G KTH+PYRDSK+TRILQ+SLGGN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 6 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMF 65
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRN 119
G+RAKTIKN V+VN ELTAEEWK++YEKEKEK+ K ++ LE+EL+RWRN
Sbjct: 66 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELNRWRN 117
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 181 bits (462), Expect = 3e-55
Identities = 92/99 (92%), Positives = 96/99 (96%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALADGNKTHIPYRDSKLTRILQESLGGNARTTI+ICCSPASFNESETKSTLDF
Sbjct: 267 ALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFNESETKSTLDF 326
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGK 106
GRRAKT+KNVV VNEELTAEEWKRRYEKEKEK++R KGK
Sbjct: 327 GRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARLKGK 365
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 170 bits (433), Expect = 4e-51
Identities = 58/92 (63%), Positives = 71/92 (77%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL VI+AL DG +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 264 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 323
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEK 99
G RAK+IKN VN EL+ E K+ K K +
Sbjct: 324 GMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ 355
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 161 bits (410), Expect = 8e-51
Identities = 72/91 (79%), Positives = 83/91 (91%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G KTH+PYRDSK+TRILQ+SL GN RTTI+ICCSP+ FNE+ETKSTL F
Sbjct: 10 ALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMF 69
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKE 98
G+RAKTIKN V+VN ELTAEEWK++YEKEKE
Sbjct: 70 GQRAKTIKNTVSVNLELTAEEWKKKYEKEKE 100
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 155 bits (395), Expect = 3e-45
Identities = 48/84 (57%), Positives = 58/84 (69%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISAL DG THIPYRDSKLTR+LQ+SLGGNA+T ++ PAS+N ET +TL +
Sbjct: 287 ALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRY 346
Query: 68 GRRAKTIKNVVTVNEELTAEEWKR 91
RAK IKN VNE+ +
Sbjct: 347 ANRAKNIKNKPRVNEDPKDALLRE 370
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 154 bits (392), Expect = 1e-44
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L V+ AL G +PYRDSKLTR+LQ+SLGG+A + +I +P +T S L+F
Sbjct: 282 VLGKVVDALNQG-LPRVPYRDSKLTRLLQDSLGGSAHSILIANIAPERRFYLDTVSALNF 340
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKE 98
R+K + N NE L +KE
Sbjct: 341 AARSKEVINRPFTNESLQPHALGPVKLSQKE 371
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 152 bits (385), Expect = 9e-44
Identities = 41/78 (52%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L VI+AL D H+PYR+SKLTR+LQESLGG +T+II SP + ET STL++
Sbjct: 296 TLGRVITALVDR-APHVPYRESKLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEY 354
Query: 68 GRRAKTIKNVVTVNEELT 85
RAK I+N VN++LT
Sbjct: 355 AHRAKNIQNKPEVNQKLT 372
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 148 bits (377), Expect = 7e-43
Identities = 45/81 (55%), Positives = 55/81 (67%), Gaps = 1/81 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL VIS L +G THIPYRDSKLTR+LQ+SLGGN++T + SPAS N ET STL +
Sbjct: 270 ALGLVISKLVEG-ATHIPYRDSKLTRLLQDSLGGNSKTLMCANISPASTNYDETMSTLRY 328
Query: 68 GRRAKTIKNVVTVNEELTAEE 88
RAK IKN +NE+ +
Sbjct: 329 ADRAKQIKNKPRINEDPKDAQ 349
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 148 bits (376), Expect = 1e-42
Identities = 42/76 (55%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL++
Sbjct: 285 TLGRVITALVERTP-HVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEY 343
Query: 68 GRRAKTIKNVVTVNEE 83
RAK I N VN++
Sbjct: 344 AHRAKNILNKPEVNQK 359
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 147 bits (374), Expect = 2e-42
Identities = 43/88 (48%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 8 ALRNVISALADG-NKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLD 66
L VI L+DG I YRDSKLTRILQ SLGGNA+T II +P SF+ ET + L
Sbjct: 263 ILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPVSFD--ETLTALQ 320
Query: 67 FGRRAKTIKNVVTVNEELTAEEWKRRYE 94
F AK +KN VNE T E +
Sbjct: 321 FASTAKYMKNTPYVNEVSTDELEHHHHH 348
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 147 bits (373), Expect = 3e-42
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
++ V+ ++A G T IPYRDS LT +LQ SL + T + C SP + SET STL F
Sbjct: 270 SINKVVMSMAAG-HTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 68 GRRAKTIKNVVTVN 81
G AK +
Sbjct: 329 GTSAKAAALEHHHH 342
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 143 bits (364), Expect = 9e-41
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + + SPA N ET ++L +
Sbjct: 262 ALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTY 320
Query: 68 GRRAKTIKNVVTVNEELT-AEEWKRRYEKEKEKSSRYKGKLEKLELE 113
R ++I N + N K+ KE++ R E E++
Sbjct: 321 ASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQ 367
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 143 bits (364), Expect = 9e-41
Identities = 40/87 (45%), Positives = 50/87 (57%), Gaps = 11/87 (12%)
Query: 8 ALRNVISALAD-----------GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASF 56
L VISALA+ IPYRDS LT +L+E+LGGN+RT ++ SPA
Sbjct: 277 TLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADI 336
Query: 57 NESETKSTLDFGRRAKTIKNVVTVNEE 83
N ET STL + RAK I+N V+VN
Sbjct: 337 NYDETLSTLRYADRAKQIRNTVSVNHH 363
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 139 bits (353), Expect = 2e-39
Identities = 53/67 (79%), Positives = 62/67 (92%), Gaps = 1/67 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G T++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 260 ALGNVISALAEG-STYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 318
Query: 68 GRRAKTI 74
G+RAKTI
Sbjct: 319 GQRAKTI 325
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 138 bits (350), Expect = 7e-39
Identities = 25/67 (37%), Positives = 34/67 (50%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L I AL D + HIP+R KLT L++SLGGN ++ + ET S+L F
Sbjct: 292 FLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETLSSLRF 351
Query: 68 GRRAKTI 74
R K +
Sbjct: 352 ASRMKLV 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 138 bits (349), Expect = 1e-38
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL+ I A+ D +K HIP+RDS+LT++L++ G +++ +I SP +T +TL +
Sbjct: 266 ALKECIRAM-DSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKE 96
R K N + + +
Sbjct: 325 SSRVKNKGNSKLEGKPIPNPLLGLDSSRT 353
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 132 bits (335), Expect = 1e-36
Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query: 8 ALRNVISALAD-----GNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETK 62
L VISALAD +PYRDS LT +L++SLGGN++T ++ SPA+ N ET
Sbjct: 279 TLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETL 338
Query: 63 STLDFGRRAKTIKN 76
STL + RAK +
Sbjct: 339 STLRYADRAKHHHH 352
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 131 bits (332), Expect = 3e-36
Identities = 39/67 (58%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 8 ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL NVISAL D + +HIPYRDSK+TRIL++SLGGNA+T +I C SP+S + ET +TL
Sbjct: 278 ALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTL 337
Query: 66 DFGRRAK 72
++ RA+
Sbjct: 338 NYASRAQ 344
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 131 bits (331), Expect = 2e-35
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 23/114 (20%)
Query: 8 ALRNVISALADGNKT---------------------HIPYRDSKLTRILQESLGGNARTT 46
L VI+ALAD + +PYRDS LT +L++SLGGN++T
Sbjct: 328 TLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTA 387
Query: 47 IIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKS 100
+I C SP ++ ET STL + +AK I+ VN+ +R +
Sbjct: 388 MIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQVDGVSAAERDAQIPSIVH 439
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 128 bits (324), Expect = 4e-35
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 273 CLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 332
Query: 66 DFGRRAKTIKN 76
F + + +
Sbjct: 333 RFASKVNSTRL 343
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 126 bits (320), Expect = 1e-34
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL +VI+AL H+P+R+SKLT +LQ+SL G+++T +++ SP N SET +L F
Sbjct: 263 ALGDVIAALRSRQG-HVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETLYSLKF 321
Query: 68 GRRAKTIK 75
R ++++
Sbjct: 322 AERVRSVE 329
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 125 bits (317), Expect = 5e-34
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L +VI AL D K +IP+R+SKLT +LQ SL G+++T + + P + SET ++L
Sbjct: 276 CLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSL 335
Query: 66 DFGRRAKTIKN 76
F + + K
Sbjct: 336 RFASKVNSTKI 346
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 125 bits (315), Expect = 2e-33
Identities = 34/103 (33%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L NVI AL HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 317 ELTNVILALLQKQD-HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRF 375
Query: 68 GRRAKTIK-NVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEK 109
+ K N L +S+ G +K
Sbjct: 376 AASVNSCKMTKAKRNRYL-----NNSVANSSTQSNN-SGSFDK 412
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 123 bits (312), Expect = 6e-33
Identities = 29/71 (40%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 8 ALRNVISALA--DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL +VI AL D K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET ++L
Sbjct: 329 ALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSL 388
Query: 66 DFGRRAKTIKN 76
F + + +
Sbjct: 389 RFASKVNSTRL 399
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 119 bits (300), Expect = 1e-31
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 8 ALRNVISALADGNK--THIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
AL NVI+ALAD + HIPYR+SKLTR+L++SLGGN +T +I SP+S +T +TL
Sbjct: 287 ALGNVINALADSKRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTL 346
Query: 66 DFGRRAKTI 74
+ RAK I
Sbjct: 347 KYANRAKDI 355
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 119 bits (301), Expect = 1e-31
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L VI AL++ H+PYR+SKLT +LQ SLGG+A+ + + SP N SE+ ++L F
Sbjct: 311 TLGLVIMALSNKES-HVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRF 369
Query: 68 GRRAK 72
+
Sbjct: 370 ASKVN 374
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 113 bits (286), Expect = 3e-29
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL K H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 336 ALKECIRALGQN-KAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 394
Query: 67 FGRRAKTIKNVVTVN 81
+ R K + + +
Sbjct: 395 YADRVKELSHHHHHH 409
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 108 bits (273), Expect = 1e-27
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 316 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLR 374
Query: 67 FGRRAKTIKN 76
+ R K +
Sbjct: 375 YADRVKELSP 384
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 1e-09
Identities = 59/332 (17%), Positives = 92/332 (27%), Gaps = 98/332 (29%)
Query: 9 LRNV-----ISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKS 63
L NV +A K + R ++T + L T I + + E KS
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVT----DFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 64 TL---------DFGRRAKTIKNVV--TVNEEL-----TAEEWKRRYEKEKEKSSRYKGKL 107
L D R T + E + T + WK +K + + L
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK-HVNCDKLTTII-ESSL 363
Query: 108 EKLELELSR-----------------------WRNGETVKEDEQVNLADPVDMAASIAPT 144
LE R W + VN S+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLV-- 417
Query: 145 PESAPASILPAIPGSGLMLGSLSNEERQKLEEERE---------RLYQQLDEKDEEINQQ 195
E P +IP + E + KLE E + + D D
Sbjct: 418 -EKQPKESTISIPS-------IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469
Query: 196 SQY-----AEKLKEQIMEQEELITTARR---DYEQLQGEMTRLTQENESAKEEVKEVLQA 247
QY LK +E E +T R D+ L+ ++ R +A + LQ
Sbjct: 470 DQYFYSHIGHHLKN--IEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQ 526
Query: 248 LE---------EPT-----RTLLNFFRQSSPK 265
L+ +P +L+F +
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEEN 558
Score = 44.1 bits (103), Expect = 4e-05
Identities = 27/265 (10%), Positives = 75/265 (28%), Gaps = 53/265 (20%)
Query: 9 LRNVISALADGNKTHI---PYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
++++S HI S R+ + +
Sbjct: 42 PKSILS---KEEIDHIIMSKDAVSGTLRLF-----------WTLLSKQEEMVQ------- 80
Query: 66 DFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKE 125
F ++ V+ +N + K + + Y + ++L + + + +
Sbjct: 81 KF------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL------YNDNQVFAK 128
Query: 126 DEQVNLADPVDMAASIAPTPESAPASILPAIPGSG---LMLGSLSNEERQKLEEERERLY 182
V+ P A ++ + GSG + L + + Q + +++
Sbjct: 129 Y-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD--FKIF 185
Query: 183 ----QQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238
+ + + + + ++ + + + + +Q E+ RL +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 239 -----EEV--KEVLQALEEPTRTLL 256
V + A + LL
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILL 270
Score = 33.3 bits (75), Expect = 0.094
Identities = 24/128 (18%), Positives = 51/128 (39%), Gaps = 16/128 (12%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKD-EEINQQSQYAEKLKEQIMEQEELITTARRDYE 221
G + + L + D KD +++ + E++ I+ ++ ++ R +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH-IIMSKDAVSGTLRLFW 69
Query: 222 QLQGEMTRLTQENESAKEEVKEVLQA----LEEPTRTLLNFFRQSSPKGTLLYNHYLLGW 277
L L+++ E ++ V+EVL+ L P +T RQ S T +Y
Sbjct: 70 TL------LSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QRQPSMM-TRMYIEQRDRL 119
Query: 278 PNQSERVS 285
N ++ +
Sbjct: 120 YNDNQVFA 127
Score = 32.1 bits (72), Expect = 0.22
Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 35/120 (29%)
Query: 189 DEEINQQSQYAEKLKEQIME--QEELITTARRDYEQLQGEMTR--LTQENESAKEEVKEV 244
D E + QY K I+ ++ + D + +Q +M + L+ KEE+ +
Sbjct: 8 DFETGEH-QYQYK---DILSVFEDAFVDNF--DCKDVQ-DMPKSILS------KEEIDHI 54
Query: 245 LQA--LEEPTRTLLNFFRQSSPK------GTLLYNHYLLGW--------PNQSERVSLWY 288
+ + T L + +L +Y + Q ++ Y
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMY 112
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 49.3 bits (118), Expect = 8e-07
Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 26/179 (14%)
Query: 82 EELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASI 141
E + R E+ K+ + K+ +L+ ++ +++ ++ ++
Sbjct: 905 ELKKLKIEARSVERYKKLHIGLENKIMQLQRKI----------DEQNKEYKSLLEKMNNL 954
Query: 142 APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEK 201
T + + + E + EEE + ++ EEI + + +
Sbjct: 955 EITYSTETEKLRSDV------------ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQ 1002
Query: 202 LKEQIMEQEELITTARRDYEQLQGEM----TRLTQENESAKEEVKEVLQALEEPTRTLL 256
+ + EE + + EQL E+ T L E E + + + + E L
Sbjct: 1003 TQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061
Score = 37.4 bits (87), Expect = 0.005
Identities = 21/159 (13%), Positives = 59/159 (37%), Gaps = 14/159 (8%)
Query: 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPE 146
+ +R+ +++ ++ K+ LE+ S + + A + + +
Sbjct: 931 MQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQ 990
Query: 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQY----AEKL 202
A + + + E++ +EE ++ + ++ E+ +Q+ E+L
Sbjct: 991 EEIAKLRKEL--------HQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL 1042
Query: 203 KEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEV 241
+I +Q + IT ++L E +L + +
Sbjct: 1043 NRRIHDQAKEITETME--KKLVEETKQLELDLNDERLRY 1079
Score = 37.0 bits (86), Expect = 0.006
Identities = 13/84 (15%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE 226
R + E ++L + + + + L+ +IM+ + I ++Y+ L +
Sbjct: 895 CCYRRMMAKRE----LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK 950
Query: 227 MTRLTQENESAKEEVKEVLQALEE 250
M L + E+++ ++ L
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRM 974
Score = 32.0 bits (73), Expect = 0.27
Identities = 10/90 (11%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 169 EERQKLEEERERLYQQ----LDEKDEEINQQSQY----AEKLKEQIMEQEELITTARRDY 220
E + + ++ R + + Q Y A++ +++ + + ++ +
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 221 EQLQGEMTRLTQENESAKEEVKEVLQALEE 250
L+ ++ +L ++ + +E K +L+ +
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/87 (12%), Positives = 31/87 (35%), Gaps = 5/87 (5%)
Query: 169 EERQKLEEERERLYQ-QLDEKDEEINQQSQYAEKLKEQIMEQEEL-ITTARRDYEQLQGE 226
R K + + + + Y LK + Q A+R+ ++L+ E
Sbjct: 853 LVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIE 912
Query: 227 MTRLTQENESAKE---EVKEVLQALEE 250
+ + + ++ ++ + ++E
Sbjct: 913 ARSVERYKKLHIGLENKIMQLQRKIDE 939
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 47.9 bits (114), Expect = 2e-06
Identities = 18/82 (21%), Positives = 45/82 (54%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E Q+L+ E++++ QQ+ + +E++ ++ +KL+ + + + I D ++ +
Sbjct: 941 ERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Query: 229 RLTQENESAKEEVKEVLQALEE 250
+LT+E + +E V ++ L E
Sbjct: 1001 KLTKERKLLEERVSDLTTNLAE 1022
Score = 47.5 bits (113), Expect = 3e-06
Identities = 31/187 (16%), Positives = 65/187 (34%), Gaps = 20/187 (10%)
Query: 69 RRAKTIKNVVTVNEELTAEEWKRRYEKE-----KEKSSRYKGKLEKLELELSRWRNGETV 123
R + + E L E + E+E + + + + ++ LE +L
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 124 KEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQ 183
+ E+V + E + +ER+ LEE L
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKL---------------TKERKLLEERVSDLTT 1018
Query: 184 QLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
L E++E+ ++ K + I E E + + ++L+ +L E+ E++ E
Sbjct: 1019 NLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Query: 244 VLQALEE 250
+ + E
Sbjct: 1079 LQAQIAE 1085
Score = 42.1 bits (99), Expect = 2e-04
Identities = 13/82 (15%), Positives = 32/82 (39%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+ ++KLE E L++Q+ E +I + K +E++ + ++
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 229 RLTQENESAKEEVKEVLQALEE 250
L +E+++ A +
Sbjct: 1120 ELESHISDLQEDLESEKAARNK 1141
Score = 41.4 bits (97), Expect = 3e-04
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+ K EEE + +L+++ + N + +L+ I + +E D E +
Sbjct: 1088 AQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQE-------DLESEKAARN 1140
Query: 229 RLTQENESAKEEVKEVLQALEE 250
+ ++ EE++ + LE+
Sbjct: 1141 KAEKQKRDLSEELEALKTELED 1162
Score = 36.7 bits (85), Expect = 0.008
Identities = 21/135 (15%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 81 NEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAAS 140
EE + +E ++ K + +SS ++ +L+ +++ + KE+E ++ S
Sbjct: 1050 KEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETS 1109
Query: 141 IAPTPESAPASILPAIPGSGLMLGSLSNE------ERQKLEEERERLYQQLDEKDEEINQ 194
+ I L S +++ L EE E L +L++ +
Sbjct: 1110 QKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169
Query: 195 QSQYAEKLKEQIMEQ 209
Q + + ++
Sbjct: 1170 QQELRGSDYKDDDDK 1184
Score = 35.6 bits (82), Expect = 0.018
Identities = 14/83 (16%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+LE+E + L + E L+ I + +E + + + + + +
Sbjct: 1098 QAALARLEDETSQKNNALKKIRE-----------LESHISDLQEDLESEKAARNKAEKQK 1146
Query: 228 TRLTQENESAKEEVKEVLQALEE 250
L++E E+ K E+++ L
Sbjct: 1147 RDLSEELEALKTELEDTLDTTAT 1169
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 42.8 bits (100), Expect = 4e-05
Identities = 11/80 (13%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD----YEQL 223
+E + + + RE ++L E D ++ ++++ E+ A++D ++
Sbjct: 81 TQEPESIRKWREEQRKRLQELDAA-------SKVMEQEWREK------AKKDLEEWNQRQ 127
Query: 224 QGEMTRLTQENESAKEEVKE 243
++ + N A + +
Sbjct: 128 SEQVEKNKINNRIADKAFYQ 147
Score = 27.8 bits (61), Expect = 3.2
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 65 LDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETV 123
LD + + ++L EEW +R ++ EK+ +K + + + +
Sbjct: 101 LDAASKVMEQEWREKAKKDL--EEWNQRQSEQVEKNKINNRIADK---AFYQQPDADII 154
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/92 (20%), Positives = 40/92 (43%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQ 222
+ + ++E +Q ++ + K I+ + + K+ E+IM+ E I T
Sbjct: 50 VENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRY 109
Query: 223 LQGEMTRLTQENESAKEEVKEVLQALEEPTRT 254
LQ Q+ + KE+V ++ +EP +
Sbjct: 110 LQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKD 141
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 7e-04
Identities = 35/225 (15%), Positives = 68/225 (30%), Gaps = 83/225 (36%)
Query: 100 SSRY----KGKLE-KLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILP 154
S+R G LE L + + + ++E L +P + A+ + P +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAA-----DDEPTTPA- 58
Query: 155 AIPGSGLM---LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEE 211
L+ LG +S+ ++ Q+ + L
Sbjct: 59 -----ELVGKFLGYVSSLVEP--------------------SKVGQFDQVLN-------L 86
Query: 212 LITTARRDYEQLQGE-----MTRLTQENESAKEEVKEVLQA-----------LEEPTRTL 255
+T Y L+G +L QEN++ + KE+++ ++ + +
Sbjct: 87 CLTEFENCY--LEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA 144
Query: 256 LNFFRQSSPKGTLLY---------NHYLLGWPNQSERVSLW--YR 289
L FR L + Y E L+ Y
Sbjct: 145 L--FRAVGEGNAQLVAIFGGQGNTDDYF------EELRDLYQTYH 181
Score = 38.1 bits (88), Expect = 0.003
Identities = 32/213 (15%), Positives = 65/213 (30%), Gaps = 70/213 (32%)
Query: 1 MNIFAC-GALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPAS---F 56
M + + + + +H+P ++ I SL N +++ P S
Sbjct: 338 M--LSISNLTQEQVQDYVNKTNSHLP-AGKQV-EI---SLV-NGAKNLVVSGPPQSLYGL 389
Query: 57 NESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEK-SSRY------------ 103
N TL R+AK ++ + + + K K S+R+
Sbjct: 390 N-----LTL---RKAKA---------PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 104 KGKLEKLELELSR----W------------RNGETVKE-DEQV--NLAD-----PVDMAA 139
+ + +L + + +G ++ + + D PV
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 140 SIAPTPESAPASILPAIPGSGLMLGSLSNEERQ 172
T + IL PG LG L++ +
Sbjct: 493 ----TTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 34.6 bits (79), Expect = 0.045
Identities = 50/263 (19%), Positives = 83/263 (31%), Gaps = 82/263 (31%)
Query: 52 SPAS---FNESE--TKSTLDFGRRAKTIKNVVTVN-EELT----AEEWKR---RYEK-EK 97
S A+ +N ++ K T F +I ++V N LT E+ KR Y
Sbjct: 1639 SKAAQDVWNRADNHFKDTYGF-----SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIF 1693
Query: 98 EKSSRYKGKLEKLELELSRWRNGETVKEDEQV-NL---ADPVDMAASIA----------- 142
E K K EK+ E++ T + ++ + + P A
Sbjct: 1694 ETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI 1753
Query: 143 PTP---------E-SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEI 192
P E +A AS+ A +S E ++ R Q +DE
Sbjct: 1754 PADATFAGHSLGEYAALASL--A--------DVMSIESLVEVVFYRGMTMQVAVPRDE-- 1801
Query: 193 NQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEV-------- 244
+S Y ++ A E LQ + + + E+
Sbjct: 1802 LGRSNYG------MIAINPGRVAASFSQEALQ----YVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 245 -------LQALEEPTRTLLNFFR 260
L+AL+ T +LNF +
Sbjct: 1852 QYVAAGDLRALDTVTN-VLNFIK 1873
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 37.1 bits (85), Expect = 0.006
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 164 GSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
G L+ ++EEER ++ + + E+ Q + K K Q ++ E R EQ+
Sbjct: 310 GQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRH--EQM 367
Query: 224 QGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265
+ + +E E + + ++ E R L + +
Sbjct: 368 KKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLE 409
Score = 30.6 bits (68), Expect = 0.56
Identities = 13/71 (18%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
E+ QKL++ L ++ ++ + + Q + +L+E+ + E+ L+ +
Sbjct: 347 KEKVQKLKDSEAELQRRHEQMKKNLEAQHK---ELEEKRRQFEDEKANWEAQQRILEQQN 403
Query: 228 TRLTQENESAK 238
+ T E K
Sbjct: 404 SSRTLEKNKKK 414
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 36.7 bits (83), Expect = 0.007
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE 226
+ + +E + + + + + +KL+++I + ++ + + YE+ E
Sbjct: 155 AKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKE 214
Query: 227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262
+ + T + E+V E Q EE L FFR+
Sbjct: 215 LDQGTPQYMENMEQVFEQCQQFEEK---RLRFFREV 247
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.012
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 34/62 (54%)
Query: 98 EKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIP 157
EK + L+KL+ L + +SAPA L AI
Sbjct: 18 EKQA-----LKKLQASLKLY--------------------------ADDSAPA--L-AIK 43
Query: 158 GS 159
+
Sbjct: 44 AT 45
Score = 26.8 bits (58), Expect = 6.7
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 17/38 (44%)
Query: 238 KEEVKEVLQA---LEEPTRTLLNFFRQSSP----KGTL 268
K+ +K+ LQA L S+P K T+
Sbjct: 19 KQALKK-LQASLKLYAD---------DSAPALAIKATM 46
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 35.5 bits (81), Expect = 0.014
Identities = 9/78 (11%), Positives = 30/78 (38%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
+ + + ++ + + + E+L++++ E + + QL +++++
Sbjct: 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203
Query: 232 QENESAKEEVKEVLQALE 249
E E VK +
Sbjct: 204 WEYECEPGMVKGIHHGPS 221
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 35.2 bits (81), Expect = 0.017
Identities = 7/62 (11%), Positives = 25/62 (40%)
Query: 193 NQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPT 252
+ + +K+ E++ E++ + ++L Q ++++ ++ Q P
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPC 60
Query: 253 RT 254
+
Sbjct: 61 QD 62
Score = 30.5 bits (69), Expect = 0.49
Identities = 10/55 (18%), Positives = 22/55 (40%)
Query: 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE 233
+ + + + EE+ Q QI E E+ ++ +LQ ++ + Q
Sbjct: 1 DSGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; 2.20A {Eubacterium eligens}
Length = 138
Score = 33.9 bits (77), Expect = 0.022
Identities = 11/67 (16%), Positives = 27/67 (40%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ 232
K ++ + L ++ KD+EI + + + I + + + Q + +L
Sbjct: 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131
Query: 233 ENESAKE 239
E +K+
Sbjct: 132 ELNDSKK 138
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 34.9 bits (81), Expect = 0.029
Identities = 13/98 (13%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+E +L +Q+ +EE ++ L Q+ Y+ L+
Sbjct: 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVV---NQDNSQVQQDPQYQSLRARGR 126
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
+ ++ + ++ + L N P G
Sbjct: 127 EIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 34.3 bits (78), Expect = 0.037
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+++ Q E ++LY++ +E+ + E E I EE T + ++
Sbjct: 24 HQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERF 83
Query: 228 TRLTQENESA-----KEEVKEVLQALEEPTRTL 255
R E E E +K + + E L
Sbjct: 84 RREGNEKEMQRILLNSERLKSRIAEIHESRTKL 116
Score = 32.3 bits (73), Expect = 0.17
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY--EQLQ 224
+ E +L EE R Q+L K I ++ + +EQ QE+ + E +
Sbjct: 30 KSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKCSKEYLERFRREGNE 89
Query: 225 GEMTRLTQENESAK---EEVKEVLQALEEPTRTLLNFFRQSSPK 265
EM R+ +E K E+ E LE+ R + R+ +
Sbjct: 90 KEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKR 133
Score = 30.8 bits (69), Expect = 0.48
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 185 LDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQE---NESAKEEV 241
+ ++D+ + + S E + Q+ + R+Y+QL E TR +QE +A E
Sbjct: 1 MSQQDQVVKEDS--VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAF 58
Query: 242 KEVLQALEEPTRT 254
E ++ EE +T
Sbjct: 59 NETIKIFEEQGQT 71
>1p9b_A Adenylosuccinate synthetase; ligase; HET: IMO GDP; 2.00A
{Plasmodium falciparum} SCOP: c.37.1.10
Length = 442
Score = 34.0 bits (79), Expect = 0.054
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 159 SGLMLGSLSNEE--RQKLE---EERERLYQQLD-EKDEEINQQSQYAEKLKEQIMEQEEL 212
G+ LG+L N E + + LY + +K++E+N Y KL+++I++
Sbjct: 156 IGIRLGTLKNFENFKNMYSKLIDHLMDLYNITEYDKEKELNLFYNYHIKLRDRIVDVISF 215
Query: 213 ITTARRD 219
+ T +
Sbjct: 216 MNTNLEN 222
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 33.4 bits (77), Expect = 0.075
Identities = 17/98 (17%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+E KL+ E ++++ E N+ + K +++ +EL+ +
Sbjct: 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLA-----------KSR 79
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
+ + + EV+E+ + ++ L N S P G
Sbjct: 80 EIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVG 117
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin,
overlap complex, coiled-coils, contractIle PROT; HET:
DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Length = 175
Score = 32.4 bits (73), Expect = 0.078
Identities = 16/78 (20%), Positives = 30/78 (38%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ 232
+E + + + KD S EK++ ELI + + + L +
Sbjct: 90 NFSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTTAKNEKSIDDLEE 149
Query: 233 ENESAKEEVKEVLQALEE 250
+ AKEE + Q L++
Sbjct: 150 KVAHAKEENLNMHQMLDQ 167
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 33.4 bits (75), Expect = 0.085
Identities = 11/83 (13%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
E+ +++E ER + Q + + ++++ +E + ++ E+++ +
Sbjct: 483 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHL---KQLTEKMENDR 539
Query: 228 TRLTQENESAKEEVKEVLQALEE 250
+L +E E + + L +
Sbjct: 540 VQLLKEQERTLALKLQEQEQLLK 562
Score = 29.2 bits (64), Expect = 1.7
Identities = 14/88 (15%), Positives = 38/88 (43%), Gaps = 11/88 (12%)
Query: 167 SNEERQKLEEERERLYQQLDEK-----DEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221
S + K+ E +R +Q+ E+ E + Q ++ E + Q+++++E + +
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 557
Query: 222 Q------LQGEMTRLTQENESAKEEVKE 243
+ Q E + E + + +++
Sbjct: 558 EQLLKEGFQKESRIMKNEIQDLQTKMRR 585
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 33.2 bits (75), Expect = 0.11
Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 2/87 (2%)
Query: 169 EERQKLEEER--ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE 226
ERQK+ ++ E+ ++L E + E E Q + +
Sbjct: 688 LERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK 747
Query: 227 MTRLTQENESAKEEVKEVLQALEEPTR 253
L E E+ E VK+V + R
Sbjct: 748 AQALAIETEAELERVKKVREMELIYAR 774
Score = 29.8 bits (66), Expect = 1.4
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E ++E E L +L + I +++ K + ME + + Q
Sbjct: 730 AEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLAN 789
Query: 229 RLTQENESA-----KEEVKEVLQALEE 250
++ + ++++ A E
Sbjct: 790 VEAKKFKEMTEALGPGTIRDLAVAGPE 816
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 32.7 bits (75), Expect = 0.13
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E+ +KL + + E+ ++ Q R +E + E
Sbjct: 187 EKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGR-FEVINNETE 245
Query: 229 RLTQENESAKEEVKEV 244
+L E + + ++
Sbjct: 246 QLKAEEKKILNQFLKI 261
Score = 30.4 bits (69), Expect = 0.70
Identities = 15/123 (12%), Positives = 42/123 (34%), Gaps = 16/123 (13%)
Query: 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPE 146
R +E S +YK + E+L+ ++ E + + ++ + + + +
Sbjct: 162 PVELSRMFEEVSGSIQYKKEYEELKEKI------EKLSKSATESIKNRRRIHGEL----K 211
Query: 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
+ + L + + E E + + ++ E + K+K++
Sbjct: 212 TYKSPGLEVLFQGPRG------SRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKR 265
Query: 207 MEQ 209
E
Sbjct: 266 KEL 268
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 31.0 bits (70), Expect = 0.16
Identities = 14/87 (16%), Positives = 38/87 (43%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E+ L +E+ L Q+ + + + + ++L + ++ E + + E +
Sbjct: 41 EKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTL 255
LT + ++E E+ + +++ TL
Sbjct: 101 ELTAKKRKLEDECSELKRDIDDLELTL 127
Score = 26.0 bits (57), Expect = 8.3
Identities = 13/82 (15%), Positives = 37/82 (45%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+E ++EE RL + L++ + + + L ++ + + + + + +
Sbjct: 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCD 72
Query: 229 RLTQENESAKEEVKEVLQALEE 250
+L + + +VKE+ + LE+
Sbjct: 73 QLIKNKIQLEAKVKEMNKRLED 94
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 32.1 bits (72), Expect = 0.18
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+ +E + + + + + +KL+++I + ++ + + YE+ E+
Sbjct: 164 KAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELD 223
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262
+ T + E+V E Q EE L FFR+
Sbjct: 224 QGTPQYMENMEQVFEQCQQFEE---KRLRFFREV 254
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 32.1 bits (72), Expect = 0.18
Identities = 10/76 (13%), Positives = 28/76 (36%)
Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQ 224
+L N+ +++ ++ Y + +E +K ++ + + A+ DY
Sbjct: 89 NLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSAC 148
Query: 225 GEMTRLTQENESAKEE 240
T + +A +
Sbjct: 149 KTERSATNQERNANAD 164
Score = 31.7 bits (71), Expect = 0.25
Identities = 12/79 (15%), Positives = 28/79 (35%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
+ Q + + + +K+ +++ + ++ + R YEQ E+T+
Sbjct: 145 HSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYN 204
Query: 232 QENESAKEEVKEVLQALEE 250
V E Q E+
Sbjct: 205 SVYIEDMTSVFEKCQTFEK 223
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 32.0 bits (72), Expect = 0.19
Identities = 8/82 (9%), Positives = 26/82 (31%), Gaps = 5/82 (6%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E L+++ R ++ E + + KL + E + +
Sbjct: 140 EYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEH-----YSKNNENSSHLE 194
Query: 229 RLTQENESAKEEVKEVLQALEE 250
++ + + E+ + ++
Sbjct: 195 EARRQWDQQSPYLFELFETIDY 216
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.1 bits (74), Expect = 0.21
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 13/109 (11%)
Query: 171 RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEEL----------ITTARR-- 218
R+K + +ERL + E +++ + ++ +E I E L I +R
Sbjct: 8 REKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG 67
Query: 219 -DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
D ++Q + L +E + +EE+++V + L+ + N S P G
Sbjct: 68 KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVG 116
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 32.2 bits (74), Expect = 0.22
Identities = 17/94 (18%), Positives = 35/94 (37%), Gaps = 11/94 (11%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ 232
+E +L LDE ++++N + K + + ++LI E +L+
Sbjct: 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIA-----------EKEKLSN 85
Query: 233 ENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
E + E+ E + L + N +S
Sbjct: 86 EKKEIIEKEAEADKNLRSKINQVGNIVHESVVDS 119
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 31.7 bits (73), Expect = 0.28
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 13/98 (13%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E L+ E + L ++L E E NQ ++ K + + E L
Sbjct: 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPE-------------EKEALIARGK 74
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
L +E + +E ++E LE + +P G
Sbjct: 75 ALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 31.3 bits (71), Expect = 0.29
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 201 KLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260
K+ E+IM+ E I T LQ Q+ + KE+V ++ +EP + +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding,
kinetoch replication-replication complex; 3.05A
{Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Length = 190
Score = 30.8 bits (69), Expect = 0.29
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 196 SQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTL 255
+ Y +K+QI + L+ L E L+++ ++ E+K++ + ++ +
Sbjct: 5 TVYKNSVKQQIDSADLLV-------ANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQV 57
Score = 27.8 bits (61), Expect = 3.9
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQ-QSQYAE------KLKEQIMEQEELITTARRD 219
++ L E L ++LD K EI Q Q Q +LK Q +Q E +
Sbjct: 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDL 77
Query: 220 YEQLQGEMTRLTQENES 236
YE L + E++S
Sbjct: 78 YEYLCNVRVHKSYEDDS 94
>1dj2_A Adenylosuccinate synthetase; GDP, ligase; HET: GDP; 2.90A
{Arabidopsis thaliana} SCOP: c.37.1.10 PDB: 1dj3_A*
Length = 443
Score = 31.3 bits (72), Expect = 0.33
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 159 SGLMLGSLSNEE--RQKLE---EERERLYQQLDEK----DEEINQQSQYAEKLKEQIMEQ 209
+G+ +G L + + QKL+ + +Q EE+ +YA++L+ I +
Sbjct: 163 NGIRVGDLRHMDTLPQKLDLLLSDAAARFQGFKYTPEMLREEVEAYKRYADRLEPYITDT 222
Query: 210 EELITTARRD 219
I +
Sbjct: 223 VHFINDSISQ 232
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
3.02A {Escherichia coli}
Length = 327
Score = 30.9 bits (71), Expect = 0.39
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 163 LGSLSNEER----QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
L L EER + E +E++ Q L+ + E+ + A E I
Sbjct: 45 LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETI 92
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
homodimer, ligase; HET: FYA; 2.50A {Thermus
thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A
1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A*
2amc_A*
Length = 350
Score = 31.1 bits (71), Expect = 0.40
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 163 LGSLSNEER----QKLEEERERLYQQLDEKDEEINQQSQYAEKLKE 204
L +L EER Q+L + L L+ +++ + +++ E L+
Sbjct: 39 LSALPLEERRKRGQELNAIKAALEAALEAREKAL-EEAALKEALER 83
>3g8l_A Lectin-related NK cell receptor LY49L1; natural killer cell
receptor, immune system; 2.50A {Mus musculus}
Length = 190
Score = 30.3 bits (68), Expect = 0.48
Identities = 9/64 (14%), Positives = 23/64 (35%)
Query: 190 EEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALE 249
+N + + + I ++EL+++ + + L +E E K + +
Sbjct: 2 ASLNCHDKCSTTTQSDINLKDELLSSTSIECRPGNDLLESLHKEQNRWYSETKTFSDSSQ 61
Query: 250 EPTR 253
R
Sbjct: 62 HTGR 65
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 30.9 bits (69), Expect = 0.50
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 150 ASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQ--QSQYAEKLKEQIM 207
L + S ++ E +R +L +K+EE+ Q + EK E
Sbjct: 300 RCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKE 359
Query: 208 EQEELITTARRDYEQLQGEMTRLTQENESAKEEVKE 243
++EL R + Q E +L + +S +EV
Sbjct: 360 AEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNA 395
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 30.3 bits (67), Expect = 0.52
Identities = 17/122 (13%), Positives = 43/122 (35%), Gaps = 3/122 (2%)
Query: 119 NGETVKEDEQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEER 178
N E AS A A + +G G + + +L +E
Sbjct: 40 NDEGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEP 99
Query: 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238
E + + +E+ + + + ++ ++++ E+ + ++ Q Q E + N
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAK---KDLEEWNQRQSEQVEKNKINNRIA 156
Query: 239 EE 240
++
Sbjct: 157 DK 158
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 30.6 bits (68), Expect = 0.54
Identities = 14/79 (17%), Positives = 28/79 (35%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
++ + + + + + KL+E++ + + YEQ E+ R T
Sbjct: 158 HTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYT 217
Query: 232 QENESAKEEVKEVLQALEE 250
E+ E QA E
Sbjct: 218 PRYMEDMEQAFESCQAAER 236
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 30.4 bits (69), Expect = 0.64
Identities = 11/116 (9%), Positives = 35/116 (30%), Gaps = 18/116 (15%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQ------------------YAEKLKEQIMEQE 210
+ + +++ R + + IN S+ + +
Sbjct: 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTL 96
Query: 211 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
+ + QL+ L+ + +E +++ + ++ + N +S P
Sbjct: 97 KGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIA 152
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 30.6 bits (69), Expect = 0.69
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 27/74 (36%)
Query: 159 SGL---MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE----------- 204
S L L ER ++R L + Q ++ KL+
Sbjct: 2306 SSLQSQCLHEALKTERPDTHKKRSDL----------LKIQGEFQVKLRILEKSLLNALSQ 2355
Query: 205 ---QIMEQEELITT 215
I++ + +I+T
Sbjct: 2356 ASGNILDDDSVIST 2369
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 30.3 bits (68), Expect = 0.73
Identities = 15/86 (17%), Positives = 32/86 (37%)
Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQ 224
+ + ++LEE + + + + E+ Q + + E RR LQ
Sbjct: 118 KIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQ 177
Query: 225 GEMTRLTQENESAKEEVKEVLQALEE 250
E+ T +E ++ + AL+
Sbjct: 178 KEIGERTHAETVMVKEYRDKIDALKN 203
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 30.2 bits (67), Expect = 0.74
Identities = 18/94 (19%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
+ +E + + + + + +KL+++I + ++ + + YE+ E+
Sbjct: 164 KAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELD 223
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQS 262
+ T + E+V E Q EE L FFR+
Sbjct: 224 QGTPQYMENMEQVFEQCQQFEE---KRLRFFREV 254
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 30.1 bits (68), Expect = 0.76
Identities = 23/120 (19%), Positives = 34/120 (28%), Gaps = 11/120 (9%)
Query: 159 SGLMLGS-------LSNEE-RQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQE 210
L G L E R++ + R Q ++E N A K
Sbjct: 126 GALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLS 185
Query: 211 ELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY 270
E+I D E L Q E K + +P+ T + S L+
Sbjct: 186 EII---TEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSSTSGGLVPRGSSGMILII 242
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 30.0 bits (67), Expect = 0.78
Identities = 14/90 (15%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
++ +E +R Q ++ D +IN EK ++Q + ++ ++ DY + +
Sbjct: 147 ERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQ 206
Query: 232 QENESAKEEVKEVLQALEEPTRTLLNFFRQ 261
E + + Q ++E + +
Sbjct: 207 HEYY--HTHIPNIFQKIQEMEERRIVRMGE 234
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo
sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Length = 121
Score = 28.7 bits (63), Expect = 0.95
Identities = 14/99 (14%), Positives = 39/99 (39%), Gaps = 3/99 (3%)
Query: 159 SGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARR 218
GL + L++E + + + + + L + ++ ++
Sbjct: 15 DGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKA---QGQK 71
Query: 219 DYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLN 257
E+L+GE+T L + + A EV+ + + + + + +
Sbjct: 72 KVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma
protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1
PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Length = 191
Score = 29.4 bits (65), Expect = 1.0
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 4/87 (4%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ-EELITTARRDYEQLQ 224
+E+ RL Q E + Q E+L+ ++ +L RD + LQ
Sbjct: 100 AQARLGADMEDVCGRLVQYRGEVQAMLGQS---TEELRVRLASHLRKLRKRLLRDADDLQ 156
Query: 225 GEMTRLTQENESAKEEVKEVLQALEEP 251
+ E ++ P
Sbjct: 157 KRLAVYQAGAREGAERGLSAIRERLGP 183
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.2 bits (68), Expect = 1.0
Identities = 18/135 (13%), Positives = 37/135 (27%), Gaps = 51/135 (37%)
Query: 159 SGL---MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKE----------- 204
+ + EE +++ +RE L I ++Y KLK
Sbjct: 2126 ESIETRIFDITLTEENAEMQRKREDL----------IKLNTEYKLKLKNLEKRLLEELNN 2175
Query: 205 ---QIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLL----- 256
++E +EL+ T + K+E + + L E
Sbjct: 2176 SQGNMLENDELMVTL------------------NNLKKEAMNIEKKLSESEEFFPQFDNL 2217
Query: 257 -NFFRQSSPKGTLLY 270
+ ++
Sbjct: 2218 VEEYSIIGKHSVKIF 2232
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 29.5 bits (66), Expect = 1.1
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 5/86 (5%)
Query: 170 ERQKLEEERERLYQQLDEKDEEINQQS-----QYAEKLKEQIMEQEELITTARRDYEQLQ 224
E Q+ E ++EK + + + L ++ E T + +
Sbjct: 107 EYQQFVANVEEEEAWINEKMTLVASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVC 166
Query: 225 GEMTRLTQENESAKEEVKEVLQALEE 250
L ++N E + ++ L+
Sbjct: 167 ANGEDLIKKNNHHVENITAKMKGLKG 192
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 28.9 bits (64), Expect = 1.2
Identities = 12/87 (13%), Positives = 36/87 (41%)
Query: 164 GSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
GSL+NE+ +L+++ E L + + + + ++ + I + E L + L
Sbjct: 1 GSLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRIL 60
Query: 224 QGEMTRLTQENESAKEEVKEVLQALEE 250
+ ++ ++ + ++ +
Sbjct: 61 ENSKSQTDKDYYQLQAILEAERRDRGH 87
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/79 (18%), Positives = 33/79 (41%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQ 222
L L+ E K+ E+ L ++ D+ + + + LK+++ + RR Q
Sbjct: 396 LRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQADAQAYGDDRRSPLQ 455
Query: 223 LQGEMTRLTQENESAKEEV 241
+ E +++ + E V
Sbjct: 456 EREEAKAMSEHDMLPSEPV 474
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 29.4 bits (67), Expect = 1.3
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 171 RQKLEEERERLYQQLDEK--DEE-INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
KLE ER ++++ D + I Q ++ +E Q ++ D++Q+Q ++
Sbjct: 6 VAKLEALHER-HEEVQALLGDAQTIADQERFRALSREY--AQLSDVSRCFTDWQQVQEDI 62
Query: 228 TRLTQ------ENESAKEEVKEV---LQALEEPTRTLL 256
E A++E++E + LE+ + LL
Sbjct: 63 ETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLL 100
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 29.4 bits (67), Expect = 1.4
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 15/96 (15%)
Query: 173 KLEEERERLYQQLDEK--DEE-INQQSQYAEKLKEQIMEQEELITTARRDYEQLQG---- 225
KL+ E Y++L+ D E + + +Y + + + R+Y ++
Sbjct: 4 KLDRLEEE-YRELEALLSDPEVLKDKGRYQSLSRRY--AEMGEVIGLIREYRKVLEDLEQ 60
Query: 226 --EMTRLTQENESAKEEVKEV---LQALEEPTRTLL 256
+ + E AK E + + +ALE+ L
Sbjct: 61 AESLLDDPELKEMAKAEREALLARKEALEKELERHL 96
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 29.1 bits (65), Expect = 1.4
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQ-----SQYAEKLKEQIMEQEELITTARRDYEQLQGE 226
Q+ + L ++ ++ AE L E+ E I ++ +
Sbjct: 16 QRFLSDFRDLMSWINGIRGLVSSDELAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQF 75
Query: 227 MTRLTQENESAKEEVKEVLQALEE 250
+L A E+K+ L L++
Sbjct: 76 GQQLLAHGHYASPEIKQKLDILDQ 99
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.3 bits (66), Expect = 1.4
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 15/113 (13%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQS-QYAEKLKE--------------QIMEQEELI 213
++ K + E R + D ++ N S EK+K+ +
Sbjct: 34 DQLVKADSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTAD 93
Query: 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
A Q++ + + E ++ E R + N S P
Sbjct: 94 ALANLKVSQIKKVRLLIDEAILKCDAERIKLEAERFENLREIGNLLHPSVPIS 146
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane,
transmembrane receptor, cell membrane, glycoprotein,
phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D*
3su8_X*
Length = 644
Score = 29.3 bits (65), Expect = 1.5
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 193 NQQSQYAEKLKEQIMEQE-ELITTARRDYEQLQGEMTRLTQENESA 237
Q + +K++ Q+ E + ++++ L EMT LT + +
Sbjct: 25 KQALRDYKKVQIQLENLESSVRDRCKKEFTDLMTEMTDLTSDLLGS 70
>3c1l_A Putative antioxidant defense protein MLR4105; structural genomics,
joint center for structural genomics, J protein
structure initiative; 2.00A {Mesorhizobium loti}
Length = 188
Score = 28.6 bits (64), Expect = 1.6
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNFFR 260
++ L + E K EE + N +
Sbjct: 6 ISALDLASGELSEPTKAYFAKCEEKLGLVPNVLK 39
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 28.3 bits (64), Expect = 1.7
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 162 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQ 194
+ E ++ E Q++ E D ++ +
Sbjct: 127 IFSLYDKEIADSVKSYMESNAQKIIEDDSKLKR 159
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 29.2 bits (65), Expect = 1.7
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 82 EELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASI 141
+ E + + ++ Y G E G T E+++ + + + +
Sbjct: 626 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 685
Query: 142 APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDE 187
+L G+ + SL+ E QKL ++++ +L+
Sbjct: 686 PEELYGTYEYLL------GMRIWSLTKERYQKLLKQKQEKETELEN 725
>2v40_A Adenylosuccinate synthetase isozyme 2; ligase, purine biosynthesis,
metal- binding, purine metabolism, nucleotide-binding,
GDP, ADSS2, magnesium; HET: GDP; 1.9A {Homo sapiens}
PDB: 1iwe_A* 1j4b_A 1lny_A* 1lon_A* 1loo_A* 1mez_A*
1mf0_A* 1mf1_A* 2dgn_A*
Length = 459
Score = 29.0 bits (66), Expect = 1.8
Identities = 12/68 (17%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 159 SGLMLGSLSNEE---RQKLE---EERERLYQQLD-EKDEEINQQSQYAEKLKEQIMEQEE 211
SGL + L ++ ++ + + + +Y L+ + + E+ + Y EK+K + +
Sbjct: 180 SGLRMCDLVSDFDGFSERFKVLANQYKSIYPTLEIDIEGELQKLKGYMEKIKPMVRDGVY 239
Query: 212 LITTARRD 219
+ A
Sbjct: 240 FLYEALHG 247
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 28.9 bits (65), Expect = 1.8
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
E AKEE+KE+++ L+ P+R F + PKG LL
Sbjct: 46 EEAKEELKEIVEFLKNPSR----FHEMGARIPKGVLLV 79
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 28.8 bits (65), Expect = 1.8
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
E AKEEV E++ L+ P R + + PKG LL
Sbjct: 17 EEAKEEVVEIVDFLKYPER----YANLGAKIPKGVLLV 50
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 28.3 bits (64), Expect = 2.0
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 162 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 197
+L +KL E RE++ +++ DE++ + +
Sbjct: 122 ILALKDENIAKKLIEYREKMKKKVYASDEKVKEMFK 157
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 28.7 bits (64), Expect = 2.0
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
+++E+ + L ++ + + + + E+LI E +
Sbjct: 238 VASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANG---EDLIKKNNHHVENITA 294
Query: 226 EMTRLTQENESAKEEVKEVLQALEE 250
+M L + ++ + L+E
Sbjct: 295 KMKGLKGKVSDLEKAAAQRKAKLDE 319
Score = 27.2 bits (60), Expect = 6.6
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 169 EERQKLEEERERLYQQLDEKDEEIN---------------QQSQYAEKLKEQIMEQEELI 213
R+ E RL+Q + D+E + + + L+++ E +
Sbjct: 99 AARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAEL 158
Query: 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250
+ + +L+ +N KEE+++ L +
Sbjct: 159 AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVD 195
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 2.0
Identities = 17/120 (14%), Positives = 34/120 (28%), Gaps = 21/120 (17%)
Query: 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
S PA P S+ + + +QL ++ +I + ++
Sbjct: 1218 SVPA---PGKGILTTAREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVE------NEL 1268
Query: 207 MEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
+ +L+ E +NE E +E+ E R + K
Sbjct: 1269 ------------EALKLEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKR 1316
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 28.4 bits (64), Expect = 2.1
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
E AKEE+KE+++ L+ P+R F + PKG LL
Sbjct: 22 EEAKEELKEIVEFLKNPSR----FHEMGARIPKGVLLV 55
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A
{Saccharomyces cerevisiae} PDB: 3vp8_A
Length = 92
Score = 27.2 bits (60), Expect = 2.2
Identities = 16/80 (20%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 162 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE 221
+L ++ E Q +E Q + D ++NQQ ++++ + E+E + YE
Sbjct: 15 LLDAIRQEFLQVSQEANTYRLQNQKDYDFKMNQQLAEMQQIRNTVYERELTHRKMKDAYE 74
Query: 222 QLQGEMTRLTQENESAKEEV 241
+ E+ L E ++
Sbjct: 75 E---EIKHLKLGLEQRDHQI 91
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 28.0 bits (62), Expect = 2.3
Identities = 16/83 (19%), Positives = 36/83 (43%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+++ K EEE + L +L E + + KL++ I + E+ + + Y+ + EM
Sbjct: 69 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEM 128
Query: 228 TRLTQENESAKEEVKEVLQALEE 250
+L + E + + +
Sbjct: 129 KQLEDKVEELLSKNYHLENEVAR 151
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 28.4 bits (64), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
+ AKEEV E+++ L EP+R F + PKG L+
Sbjct: 18 DEAKEEVAELVEYLREPSR----FQKLGGKIPKGVLMV 51
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 28.7 bits (64), Expect = 2.5
Identities = 22/139 (15%), Positives = 45/139 (32%), Gaps = 14/139 (10%)
Query: 87 EEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASIAPTPE 146
+E+++ Y+K E Y+ +LE++E EL+ + E NL + +
Sbjct: 159 DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLD 218
Query: 147 SAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
+ + E+ + + L+E E + + E K+
Sbjct: 219 KVRRIF------------GRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKD-- 264
Query: 207 MEQEELITTARRDYEQLQG 225
E + L G
Sbjct: 265 FEVRVHAPNGVLTIDNLSG 283
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 28.2 bits (62), Expect = 2.6
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 167 SNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY--EQLQ 224
+ E +L EE R Q+L K I ++ + +EQ QE+ + E +
Sbjct: 29 KSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNE 88
Query: 225 GEMTRLTQENESAKEEVKEVLQALEE 250
EM R+ +E K + E+ ++ +
Sbjct: 89 KEMQRILLNSERLKSRIAEIHESRTK 114
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A
{Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A*
Length = 330
Score = 28.5 bits (64), Expect = 2.6
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 166 LSNEER--QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
+ + ER L+ E ++ + + ++++ A L +QI + + ++
Sbjct: 123 MGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQI----HFVHS--QELLSR 176
Query: 224 QGEMTRLTQENESAKE 239
++ +E AK+
Sbjct: 177 YPDLDAKGRERAIAKD 192
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 27.1 bits (60), Expect = 2.7
Identities = 10/73 (13%), Positives = 34/73 (46%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
Q L+ ++E + ++ + + + +++L++ I++ E+ + +Q+ E+ +
Sbjct: 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71
Query: 232 QENESAKEEVKEV 244
A+E +
Sbjct: 72 DSLLFAEENAAKA 84
>1m5y_A SurviVal protein, surviVal protein SURA; surviVal protein A,
periplasmic molecular chaperone, membrane protein
folding, GRAM negative bacteria; 3.00A {Escherichia
coli} SCOP: a.223.1.2 d.26.1.1 d.26.1.1 PDB: 2pv3_A
Length = 408
Score = 28.5 bits (63), Expect = 2.8
Identities = 9/93 (9%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 174 LEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRD-----YEQLQGEMT 228
++ + + + +++ + ++ E+++ + ++ ++ EQL +
Sbjct: 22 VDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIA 81
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261
+ ++N ++++ L T N R+
Sbjct: 82 NIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRK 114
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.3 bits (64), Expect = 2.8
Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 19/102 (18%)
Query: 171 RQKLEEERERLYQQLDEK--DEE-INQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+L+ +R Y++L E D + ++ ++ E +E+ R+Y+Q+ +
Sbjct: 16 YDQLQAVEDR-YEELGELLSDPDVVSDTKRFMELSREE--ANSRETVAVYREYKQVVQNI 72
Query: 228 TR----LTQEN------ESAKEEVKEV---LQALEEPTRTLL 256
+ + E AKEE+K + EE R LL
Sbjct: 73 ADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLL 114
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 28.7 bits (65), Expect = 3.0
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 10/82 (12%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYE-----Q 222
E KL EE +L + + + E + + + + ++ E I A R Y+ +
Sbjct: 436 EAEIAKLTEEIAKLRAEWEREREILRK----LREAQHRLDEVRREIELAERQYDLNRAAE 491
Query: 223 LQ-GEMTRLTQENESAKEEVKE 243
L+ GE+ +L E E+ E+++
Sbjct: 492 LRYGELPKLEAEVEALSEKLRG 513
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high
density lipop (HDL), lipid binding, plasma, lipid
transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Length = 185
Score = 27.7 bits (61), Expect = 3.3
Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME-QEELITTARRDYEQL 223
L E + LEE + ++ LD+ ++ ++ E ++++ + EL AR+ +L
Sbjct: 82 GLRQEMSKDLEEVKAKVQPYLDDFQKKWQEE---MELYRQKVEPLRAELQEGARQKLHEL 138
Query: 224 QGEMTRLTQENESAKEEVKEVLQALEEP 251
Q +++ L +E + L+ P
Sbjct: 139 QEKLSPLGEEMRDRARAHVDALRTHLAP 166
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54
activator, bacterial transcription, DIM transcription;
HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1
c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Length = 387
Score = 27.8 bits (63), Expect = 4.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQI 206
E +KL +E E L ++ D K+EE +S +++ E+I
Sbjct: 117 EHRKLRKENELLRREKDLKEEEYVFESPKMKEILEKI 153
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 28.0 bits (61), Expect = 4.0
Identities = 13/90 (14%), Positives = 33/90 (36%), Gaps = 5/90 (5%)
Query: 161 LMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY 220
L + NEE + E L + ++ + + E L + I + + ++
Sbjct: 594 LAQDGVINEEALSVTE----LDRVYGGLTTKVQESLKKQEGLLKNIQVSHQEFSKMKQSN 649
Query: 221 EQLQGEMTRLTQENESAKEEVKEVLQALEE 250
+ + + +A + E++ L+E
Sbjct: 650 NEAN-LREEVLKNLATAYDNFVELVANLKE 678
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 27.5 bits (61), Expect = 4.1
Identities = 6/53 (11%), Positives = 16/53 (30%), Gaps = 3/53 (5%)
Query: 171 RQKLEEERERL---YQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY 220
+ K E Q + + +L+ +I E+++ +
Sbjct: 190 KSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHKIALVEDVLKEGHHHH 242
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 26.6 bits (58), Expect = 4.1
Identities = 13/86 (15%), Positives = 31/86 (36%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
N+ + L +E +Q + + K Q E E+ +++ E+L E
Sbjct: 22 NQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81
Query: 228 TRLTQENESAKEEVKEVLQALEEPTR 253
+ E ++ + + + + R
Sbjct: 82 ASMKLELDALRSKYEALQNFARTVAR 107
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 27.7 bits (61), Expect = 4.2
Identities = 14/83 (16%), Positives = 40/83 (48%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+E L+++ + +LD+ E + + E +++ + E + + R + + E+
Sbjct: 40 EDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEEL 99
Query: 228 TRLTQENESAKEEVKEVLQALEE 250
R + +A ++++E +A +E
Sbjct: 100 DRAQERLATALQKLEEAEKAADE 122
Score = 27.7 bits (61), Expect = 4.4
Identities = 16/88 (18%), Positives = 38/88 (43%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+ +LEEE + + L + + + SQ +K +E+I + + A E + +
Sbjct: 187 EGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSV 246
Query: 228 TRLTQENESAKEEVKEVLQALEEPTRTL 255
T+L + + ++E+ + + L
Sbjct: 247 TKLEKSIDDLEDELYAQKLKYKAISEEL 274
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 27.7 bits (61), Expect = 4.4
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 6/88 (6%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELI------TTARRDYEQ 222
+ + + + Q L + E N + E+LK++ Q E+ A Y+
Sbjct: 122 AGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKL 181
Query: 223 LQGEMTRLTQENESAKEEVKEVLQALEE 250
+ + E E + Q +EE
Sbjct: 182 YVEKYALAKADFEQKMTETAQKFQDIEE 209
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator
family, PSI, protein structure initiative; HET: MSE;
2.25A {Bacillus subtilis} SCOP: a.4.5.28
Length = 155
Score = 27.0 bits (60), Expect = 4.6
Identities = 6/36 (16%), Positives = 15/36 (41%)
Query: 162 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQ 197
L L+ EE + +L Q + +++ ++
Sbjct: 119 YLSFLTEEEMLQAAHITAKLAQAAETDEKQNMKRGN 154
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase,
actin-bindi protein binding, cytoskeleton regulator;
2.70A {Drosophila melanogaster}
Length = 190
Score = 27.3 bits (60), Expect = 4.7
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 167 SNEERQKLEEERERLYQQLDEKD---EEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
+ER LE +R+ LY+Q++E +I ++ L + + + DY+
Sbjct: 99 RQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMC-----ADYDYF 153
Query: 224 QGEMTRLTQENESAKEEVK---EVLQALEE 250
+L + +K E L +L +
Sbjct: 154 INMKAKLIADARDLAVRIKGSEEQLSSLSD 183
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A
{Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A
Length = 417
Score = 27.6 bits (60), Expect = 5.1
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 127 EQVNLADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLD 186
+ + M APTP + PAS+L N R + +E+ D
Sbjct: 3 DPIRTKPKSSMQIDNAPTPHNTPASVLNPSY------LKNGNPVRAQAQEQ--------D 48
Query: 187 EKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQ 246
+K IN++ A + Q+ L + +D + + VKE L
Sbjct: 49 DKIGTINEEDILANQPLLLQSIQDRLGSLVGQDSGYV-----------GGLPKNVKEKLL 97
Query: 247 ALEE 250
+L+
Sbjct: 98 SLKT 101
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 27.6 bits (61), Expect = 5.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 133 DPVDMAASIAPTPESAPASILPAIPGSGL----MLGSLSNEE-RQKLEEERERLYQQLDE 187
V S P S + + GS + G LSN KL + L +
Sbjct: 357 WGVQDVWSSLRLPSGLGCSTVLSPEGSAQFAAQIFG-LSNHLVWSKLRASILNTWISLKQ 415
Query: 188 KDEEINQQS 196
D++I + +
Sbjct: 416 ADKKIRECN 424
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 27.6 bits (62), Expect = 5.2
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
E AKEE+KE+++ L+ P+R F + PKG LL
Sbjct: 37 EEAKEELKEIVEFLKNPSR----FHEMGARIPKGVLLV 70
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma,
lipid binding protein; 1.7A {Homo sapiens} SCOP:
a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Length = 165
Score = 27.0 bits (59), Expect = 5.6
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 165 SLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIME-QEELITTARRDYEQL 223
+ +E+ R RL Q E + Q E+L+ ++ +L RD + L
Sbjct: 99 AAQARLGADMEDVRGRLVQYRGEVQAMLGQS---TEELRVRLASHLRKLRKRLLRDADDL 155
Query: 224 QGEMT 228
Q +
Sbjct: 156 QKRLA 160
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 27.5 bits (62), Expect = 5.6
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 6/38 (15%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLLY 270
E A EE+KEV++ L++P++ F R + PKG LL
Sbjct: 22 EEAIEELKEVVEFLKDPSK----FNRIGARMPKGILLV 55
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 27.6 bits (61), Expect = 5.7
Identities = 11/91 (12%), Positives = 36/91 (39%), Gaps = 9/91 (9%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLK---------EQIMEQEELITTARRD 219
E Q + +R Q +I + ++ + + ++ + +L+ + +
Sbjct: 830 AELQTIRLPADRKIQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEIN 889
Query: 220 YEQLQGEMTRLTQENESAKEEVKEVLQALEE 250
+ + G + ++N+ E ++EV + +
Sbjct: 890 LDYILGLIFEHNRQNKGKGEMIEEVKRLIRS 920
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 27.4 bits (60), Expect = 6.0
Identities = 12/78 (15%), Positives = 33/78 (42%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
L++E + L + EK +++++ E + I+ EE + + + +
Sbjct: 14 SHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTN 73
Query: 232 QENESAKEEVKEVLQALE 249
+ S ++++ E+ E
Sbjct: 74 AKIASIQKKMSEIKSERE 91
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 27.4 bits (60), Expect = 6.1
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLK------EQIMEQEELITTARRDYE 221
++ EER L Q+ ++ I Q A Q+ EQ T+ +D
Sbjct: 9 SDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVT 68
Query: 222 QLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPK 265
+ ++ +E ++EV A++E L +
Sbjct: 69 EYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQR 112
Score = 27.0 bits (59), Expect = 8.1
Identities = 12/77 (15%), Positives = 28/77 (36%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
+ +L +Q E+ ++Y ++L E+ E + E+ RL+
Sbjct: 44 LAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLS 103
Query: 232 QENESAKEEVKEVLQAL 248
Q S + + + +
Sbjct: 104 QPGGSEDQRLNALAERF 120
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 26.9 bits (60), Expect = 6.3
Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 162 MLGSLSNEERQKLEEERERLYQQLDEKDEEINQQ--SQYAEKLK 203
+LG E +K++E +ER+ +++ EK + + Q +Y + +
Sbjct: 140 ILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQKE 183
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 27.1 bits (61), Expect = 6.5
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 3 IFACG-----ALRNVISALADGNK 21
I+ G ++I A + GNK
Sbjct: 267 IYLAGETTTQGPSSLIIAASQGNK 290
>1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative
decarboxylase, rossmann fold, MAla dehydrogenase; HET:
NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB:
1llq_A*
Length = 605
Score = 27.4 bits (61), Expect = 6.5
Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 21/84 (25%)
Query: 142 APTPESAPASILPAIPGSGLMLGSLSN-------EERQKL-------------EEERERL 181
A P + P + L+ N ERQ L E++ R+
Sbjct: 23 ALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRV 82
Query: 182 YQQLDEKDEEINQQSQYAEKLKEQ 205
+L E+ ++ + + L+++
Sbjct: 83 ITKLREQPNDL-ARYIQLDGLQDR 105
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 26.0 bits (57), Expect = 6.6
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 191 EINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250
+ AE+ + + E+ + + LQ ++ E E E VKE + LE+
Sbjct: 17 DKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQ 76
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus
norvegicus}
Length = 96
Score = 26.0 bits (57), Expect = 6.7
Identities = 16/83 (19%), Positives = 42/83 (50%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
E ++L E ERL Q+L++ ++ ++ EK++ + ++ +R+Y + + +
Sbjct: 10 QRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQ 69
Query: 228 TRLTQENESAKEEVKEVLQALEE 250
L E +S + +++ L++
Sbjct: 70 LELDDELKSVENQMRYAQMQLDK 92
>1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent,
NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET:
NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB:
2aw5_A
Length = 555
Score = 27.3 bits (61), Expect = 6.7
Identities = 6/52 (11%), Positives = 20/52 (38%), Gaps = 14/52 (26%)
Query: 167 SNEERQKL-------------EEERERLYQQLDEKDEEINQQSQYAEKLKEQ 205
+ EERQ+L + + + + + +++ + L+++
Sbjct: 19 TLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLD-RYILLMSLQDR 69
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.5 bits (62), Expect = 7.0
Identities = 11/64 (17%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 174 LEEERERLYQQLDEKDEEINQQSQ------YAEKLKEQIMEQE-ELITTARRDYEQLQGE 226
+EE R R ++L E + + + EK ++++E E + E+++
Sbjct: 798 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREA 857
Query: 227 MTRL 230
++++
Sbjct: 858 LSQI 861
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 27.2 bits (59), Expect = 7.3
Identities = 13/79 (16%), Positives = 32/79 (40%)
Query: 172 QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLT 231
+E + E + + +KL +++ + + + + YE++ ++ + T
Sbjct: 158 HLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTT 217
Query: 232 QENESAKEEVKEVLQALEE 250
+ E+V E Q EE
Sbjct: 218 PQYMEGMEQVFEQCQQFEE 236
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 26.8 bits (60), Expect = 7.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSS--PKGTLL 269
AK EV+E + L+ P R F + + PKG LL
Sbjct: 12 HEAKLEVREFVDYLKSPER----FLQLGAKVPKGALL 44
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 27.1 bits (61), Expect = 7.6
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARR 218
L L+N + LE E + L + + ++ +KE++ E ++ + R
Sbjct: 448 LYRLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERL 503
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC
domain, protein transport, endocytosis; 2.00A {Mus
musculus} PDB: 2v8s_V
Length = 102
Score = 25.8 bits (56), Expect = 8.2
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 157 PGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTA 216
PG + + S+E +KL E L + L E + + E+ K+ + + +E A
Sbjct: 3 PGIHMAASAASSEHFEKLHEIFRGLLEDLQGVPERL-LGTAGTEEKKKLVRDFDEKQQEA 61
Query: 217 RRDYEQLQGE 226
+++ E
Sbjct: 62 NETLAEMEEE 71
>3ps0_A Crispr-associated protein, CSA2; viral resistance, CAS, CASS, RNA-
RNA-recognition motif, nucleic-acid binding; 2.00A
{Sulfolobus solfataricus}
Length = 328
Score = 26.7 bits (58), Expect = 8.5
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 7/130 (5%)
Query: 82 EELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAASI 141
E+ K E E++K+ R K ++ L LS G K + + + +
Sbjct: 205 PSTFGEKVKGEEELERQKAKRVKSAIKALYSLLSGNFGG---KRSRFLPSMKLMSLVVTK 261
Query: 142 APTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEK 201
P + + L + Y +E E +
Sbjct: 262 TDFPFMPE---PAHDDDYIKTTIMRLGKAKGVLNGNLAKAYVINNEGIEVGEGVTV-LST 317
Query: 202 LKEQIMEQEE 211
+++ +++ EE
Sbjct: 318 VEDLVVKLEE 327
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 26.4 bits (58), Expect = 9.0
Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 15/97 (15%)
Query: 169 EERQKLEEERERLYQQLDEKDEEIN---------------QQSQYAEKLKEQIMEQEELI 213
R+ E RL+Q + D+E + + + L+++ E +
Sbjct: 99 AARRAKLNESHRLHQFFRDMDDEESWIKEKKLLVSSEDYGRDLTGVQNLRKKHKRLEAEL 158
Query: 214 TTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEE 250
+ + +L+ +N KEE+++ L +
Sbjct: 159 AAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVD 195
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.40A {Thermotoga maritima}
Length = 280
Score = 26.7 bits (60), Expect = 9.2
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 159 SGLMLGS----LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELIT 214
GL + S LS EERQ + LYQ L + + AEK+KE++++
Sbjct: 180 DGLAMSSRNVYLSPEERQ----QALSLYQSLKIAENLYLNGERDAEKIKEEMIKHLSRFD 235
Query: 215 TARRDY 220
+ DY
Sbjct: 236 KVKIDY 241
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 26.9 bits (60), Expect = 9.5
Identities = 9/56 (16%), Positives = 21/56 (37%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARR 218
L L+ E ++ E++ L + E++ + ++ E + RR
Sbjct: 690 LRHLAKLEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAKKFGDERR 745
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 27.0 bits (60), Expect = 9.7
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 6/100 (6%)
Query: 168 NEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGE- 226
+K + + Y++L +E + L + E + A +L G
Sbjct: 144 GVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDGVA 203
Query: 227 MTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKG 266
+ R + + + L L + + + K
Sbjct: 204 LYRFPRRVRVEYVKKERAGLRLP-----LAAWVEKEAYKP 238
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 26.9 bits (59), Expect = 9.7
Identities = 14/96 (14%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
+ ++E K EE + ++ + + + ++L + + L++ + EQ+
Sbjct: 27 VISDEIPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLASR---AQGLLSAGHPEGEQIIR 83
Query: 226 EMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQ 261
++ + K+ +E + LE L R+
Sbjct: 84 LQGQVDKHYAGLKDVAEERKRKLEN-MYHLFQLKRE 118
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional
3-deoxy-7-phosphoheptulonate synthase/chorismat listeria
monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB:
3tfc_A*
Length = 385
Score = 26.7 bits (59), Expect = 9.8
Identities = 17/121 (14%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 159 SGLMLGS--LSNEERQKLEEERERLYQQLDEKDEEI----NQQSQYAEKLKEQIMEQEEL 212
SG+ LG+ L + + E L Q+D+ + ++ ++++ +++ + Q L
Sbjct: 9 SGVDLGTENLYFQSNAMVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSL 68
Query: 213 ITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNH 272
R+ E L E V+++ + + + L + +
Sbjct: 69 RFDPLREREML--NTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKK 126
Query: 273 Y 273
Sbjct: 127 E 127
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 26.7 bits (60), Expect = 9.9
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARR 218
L L+N + L+EE L +++ I + +K+++ E ++ T R
Sbjct: 424 LYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRL 479
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.127 0.351
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,209,669
Number of extensions: 244538
Number of successful extensions: 1641
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1465
Number of HSP's successfully gapped: 413
Length of query: 290
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 197
Effective length of database: 4,105,140
Effective search space: 808712580
Effective search space used: 808712580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.7 bits)