RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5721
(290 letters)
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 116 bits (291), Expect = 5e-31
Identities = 58/92 (63%), Positives = 71/92 (77%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL VI+AL DG +H+PYRDSKLTRILQESLGGN+RTT+II CSP+S+N++ET STL F
Sbjct: 263 ALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDAETLSTLRF 322
Query: 68 GRRAKTIKNVVTVNEELTAEEWKRRYEKEKEK 99
G RAK+IKN VN EL+ E K+ K K +
Sbjct: 323 GMRAKSIKNKAKVNAELSPAELKQMLAKAKTQ 354
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 115 bits (287), Expect = 2e-30
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 4 FACGALRNVISALADGN--KTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESET 61
+ L +VI AL + K HIP+R+SKLT +LQ SL G+++T + + SP+S + +ET
Sbjct: 267 KSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINET 326
Query: 62 KSTLDFGRRAKTIKNV 77
++L F + + + V
Sbjct: 327 LNSLRFASKVNSTRLV 342
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 109 bits (273), Expect = 1e-28
Identities = 52/67 (77%), Positives = 62/67 (92%), Gaps = 1/67 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL NVISALA+G+ ++PYRDSK+TRILQ+SLGGN RTTI+ICCSP+S+NESETKSTL F
Sbjct: 258 ALGNVISALAEGST-YVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNESETKSTLLF 316
Query: 68 GRRAKTI 74
G+RAKTI
Sbjct: 317 GQRAKTI 323
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 109 bits (273), Expect = 2e-28
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 6 CGALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTL 65
L VI+AL + H+PYR+SKLTRILQ+SLGG RT+II SPAS N ET STL
Sbjct: 275 LLTLGRVITALVE-RTPHVPYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTL 333
Query: 66 DFGRRAKTIKN 76
++ RAK I N
Sbjct: 334 EYAHRAKNILN 344
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 105 bits (261), Expect = 7e-27
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL+ I A+ +K HIP+RDS+LT++L++ G +++ +I SP +T +TL +
Sbjct: 266 ALKECIRAMD-SDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRY 324
Query: 68 GRRAK 72
R K
Sbjct: 325 SSRVK 329
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 101 bits (251), Expect = 3e-25
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQES-LGGNARTTIIICCSPASFNESETKSTLD 66
AL+ I AL NK H P+R+SKLT++L++S +G N+RT +I SP + T +TL
Sbjct: 295 ALKECIRALGQ-NKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLR 353
Query: 67 FGRRAKTI 74
+ R K +
Sbjct: 354 YADRVKEL 361
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 100 bits (250), Expect = 3e-25
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
AL +VISAL+ GN+ HIPYR+ KLT ++ +SLGGNA+T + + SPA N ET ++L +
Sbjct: 257 ALGDVISALSSGNQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTY 315
Query: 68 GRRAKTIKNVVTVNEELT-AEEWKRRYEKEKEKSSRYKGKLEKLELE 113
R ++I N + N K+ KE++ R E E++
Sbjct: 316 ASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQ 362
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 100 bits (249), Expect = 4e-25
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 11/76 (14%)
Query: 8 ALRNVISALADGNK-----------THIPYRDSKLTRILQESLGGNARTTIIICCSPASF 56
L VISALA+ + IPYRDS LT +L+E+LGGN+RT ++ SPA
Sbjct: 274 TLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADI 333
Query: 57 NESETKSTLDFGRRAK 72
N ET STL + RAK
Sbjct: 334 NYDETLSTLRYADRAK 349
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 99.6 bits (247), Expect = 1e-24
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 8 ALRNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDF 67
L NVI AL HIPYR+SKLT +L SLGGN++T + I SP E+ +L F
Sbjct: 303 ELTNVILALLQKQD-HIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRF 361
Query: 68 GRRAKT 73
+
Sbjct: 362 AASVNS 367
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 37.1 bits (85), Expect = 0.002
Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 10/139 (7%)
Query: 82 EELTAEEWKRRYEKE-KEKSSRYKGKLEKLELELSRWRNGETVKEDEQVNLADPVDMAAS 140
+ E + + KE Y +++ +++ + + +EDE+ + D ++
Sbjct: 628 NAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVING 687
Query: 141 IAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDE--KDEEINQQSQY 198
+ +L G+ + SL+ E QKL ++++ +L+ K + +
Sbjct: 688 PEELYGTYEY-LL------GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTD 740
Query: 199 AEKLKEQIMEQEELITTAR 217
+ + E + AR
Sbjct: 741 LKAFEVGYQEFLQRDAEAR 759
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 31.0 bits (70), Expect = 0.080
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 133 DPVDMAASIAPTPESAPASILPAIPGS---GLMLG---SLSNEE-RQKLEEERERLYQQL 185
+ +D SI P P + + AI + G++ + E +K++E +ER+ +++
Sbjct: 92 NGLDSLFSIVQMPGGVPVATV-AINNAKNAGILAASILGIKYPEIARKVKEYKERMKREV 150
Query: 186 DEKDEEINQQSQYAEKLKEQ 205
EK + + Q Y E L ++
Sbjct: 151 LEKAQRLEQIG-YKEYLNQK 169
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 31.9 bits (72), Expect = 0.093
Identities = 30/147 (20%), Positives = 48/147 (32%), Gaps = 21/147 (14%)
Query: 74 IKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELELSR--WRNGETVKEDEQVNL 131
+ + T E K + LE+ + +R W E D L
Sbjct: 362 DPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL 421
Query: 132 ADPVDMAASIAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEKDEE 191
T + A A IL L L L+ E +KL +E + L Q+ E
Sbjct: 422 ------------TEQQAQA-IL------DLRLQKLTGLEHEKLLDEYKELLDQIAELLRI 462
Query: 192 INQQSQYAEKLKEQIMEQEELITTARR 218
+ + E ++E++ E RR
Sbjct: 463 LGSADRLMEVIREELELVREQFGDKRR 489
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli
[TaxId: 562]}
Length = 327
Score = 30.4 bits (69), Expect = 0.21
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 8/76 (10%)
Query: 166 LSNEER--QKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
+ + ER L+ E ++ + + ++++ A L +QI + + ++
Sbjct: 120 MGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPFLPDQI----HFVHS--QELLSR 173
Query: 224 QGEMTRLTQENESAKE 239
++ +E AK+
Sbjct: 174 YPDLDAKGRERAIAKD 189
>d1gs9a_ a.24.1.1 (A:) Apolipoprotein E {Human (Homo sapiens), E4
[TaxId: 9606]}
Length = 144
Score = 29.4 bits (66), Expect = 0.29
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ-EELITTARRDYEQLQ 224
+E+ R RL Q E + Q E+L+ ++ +L RD + LQ
Sbjct: 79 AQARLGADMEDVRGRLVQYRGEVQAMLGQS---TEELRVRLASHLRKLRKRLLRDADDLQ 135
Query: 225 GEMT 228
+
Sbjct: 136 KRLA 139
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532
{Ralstonia eutropha [TaxId: 106590]}
Length = 190
Score = 29.0 bits (64), Expect = 0.45
Identities = 4/35 (11%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 227 MTRLTQ-ENESAKEEVKEVLQALEEPTRTLLNFFR 260
++R E + +++++ + +++ + N F
Sbjct: 4 ISRYPVPELAALPDDIRQRILEVQDKAGFVPNVFL 38
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 28.8 bits (63), Expect = 0.71
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQ-QSQYAEKLKEQIMEQEELITTARRDYEQLQGEM 227
+K+ E E L ++LD + + + ++ ++ EQ+ + + +
Sbjct: 12 ANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDAR 71
Query: 228 TRLTQENESAKEEVKEVLQALEEPTRTLLN 257
R +E E+A+ + Q L + L +
Sbjct: 72 ERAEREREAARGDAAAEKQRLASLLKDLED 101
>d2oyoa1 a.152.1.3 (A:10-195) Uncharacterized protein Dgeo_1446
{Deinococcus geothermalis [TaxId: 68909]}
Length = 186
Score = 27.9 bits (61), Expect = 1.3
Identities = 8/50 (16%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 227 MTRLT-QENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLL 275
++ L + E V+++ E + N FR + G +
Sbjct: 3 ISSLPVPDATQVPEGVRKLWAKAEANIGFVPNVFRAQAVNGEQFLAWWNY 52
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 1.4
Identities = 14/80 (17%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 170 ERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDY------EQL 223
+ + +L + E + + + + ++ E I A R Y E
Sbjct: 286 AIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELR 345
Query: 224 QGEMTRLTQENESAKEEVKE 243
GE+ +L E E+ E+++
Sbjct: 346 YGELPKLEAEVEALSEKLRG 365
>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase
{Trypanosome (Leishmania mexicana) [TaxId: 5665]}
Length = 160
Score = 26.9 bits (59), Expect = 2.2
Identities = 13/118 (11%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 6 CGALRNVISALA---------DGNKTHIPYRDSKLTRILQESLGGNARTTIIICCSPASF 56
A++NV++ + + + R R L +LGG+ A
Sbjct: 9 ASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAV----FGLAGL 64
Query: 57 NESETKSTLDFGRRAKTIKNVVTVNEELTAEEWKRRYEKEKEKSSRYKGKLEKLELEL 114
+ + + + R K + + + + + ++L++++
Sbjct: 65 GDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKM 122
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 27.4 bits (60), Expect = 2.2
Identities = 13/121 (10%), Positives = 33/121 (27%), Gaps = 7/121 (5%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
++ + + + + + E E + T+R+ Q
Sbjct: 123 TLKEVFQIASNDHDAAI-----NRYSRLSKKRENDKVKYEVTEDVYTSRKKQHQTMMHYF 177
Query: 229 RLTQENESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLGWPNQSERVSLWY 288
+ K+ +L+ L + ++FF+ S +L + V
Sbjct: 178 CALNTLQYKKK--IALLEPLLGYMQAQISFFKMGSENLNEQLEEFLANIGTSVQNVRREM 235
Query: 289 R 289
Sbjct: 236 D 236
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 27.1 bits (60), Expect = 2.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLY 270
+ AKEEV E+++ L EP+R PKG L+
Sbjct: 18 DEAKEEVAELVEYLREPSR--FQKLGGKIPKGVLMV 51
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 26.1 bits (57), Expect = 2.6
Identities = 10/85 (11%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
+++E+ + L ++ + + + + E+LI E +
Sbjct: 20 VASEDYGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCAN---GEDLIKKNNHHVENITA 76
Query: 226 EMTRLTQENESAKEEVKEVLQALEE 250
+M L + ++ + L+E
Sbjct: 77 KMKGLKGKVSDLEKAAAQRKAKLDE 101
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 105
Score = 26.0 bits (57), Expect = 2.8
Identities = 11/77 (14%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQ 232
+ +++ L I+ + + + I D+E+ + L +
Sbjct: 31 NYIKTYGDIFRALKALKVNIDHVEEIRNFFLNPPVTDDYRIEFREPDFEKA---IEFLCE 87
Query: 233 ENESAKEEVKEVLQALE 249
E++ ++E V++ L+ L+
Sbjct: 88 EHDFSRERVEKALEKLK 104
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 25.1 bits (55), Expect = 3.0
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKDEE 191
+G LS +++ L + RE + L
Sbjct: 5 VGDLSPRQKEALAKFRENVQDVLPALPNP 33
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 25.7 bits (56), Expect = 3.0
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
L+ ++ E L ++ ++ D+ IN Q L+ ++LI +
Sbjct: 26 LNADDDANAGGNVEALIKKHEDFDKAINGHEQKIAALQTV---ADQLIAQNHYASNLVDE 82
Query: 226 EMTRLTQENESAKEEVKEVLQALEE 250
+ ++ + KE + E L +
Sbjct: 83 KRKQVLERWRHLKEGLIEKRSRLGD 107
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 26.0 bits (57), Expect = 3.1
Identities = 20/81 (24%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
E + L E+RE + + + EE N + A++ Q ME + + E M
Sbjct: 64 ELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNK------ENREAHLAAML 117
Query: 229 RLTQENESAKEEVKEVLQALE 249
QE + EEV++ + E
Sbjct: 118 ERLQEKDKHAEEVRKNKELKE 138
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 26.3 bits (58), Expect = 4.2
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 235 ESAKEEVKEVLQALEEPTRTLLNFFRQSSPKGTLLYNHYLLG 276
E AKEE+KE+++ L+ P+R + PKG LL +G
Sbjct: 15 EEAKEELKEIVEFLKNPSR--FHEMGARIPKGVLLVGPPGVG 54
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 26.4 bits (58), Expect = 4.2
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 171 RQKLEEERERLY-QQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQL 223
+++LEE +E+L Q D++ + L+EQI +E + +A+ + + L
Sbjct: 176 QKELEEAKEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVESAQSEQKNL 229
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 25.7 bits (56), Expect = 5.2
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 29 SKLTRILQESLGGNARTTIIICCSPASFNESETKSTLDFGRRAKTIKNVVTVNEELTA 86
K+ + ++ LG +I PA FN+++ ++T D GR A V + E TA
Sbjct: 119 KKMKKTAEDYLGEPVTEAVI--TVPAYFNDAQRQATKDAGRIAGL--EVKRIINEPTA 172
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 25.3 bits (54), Expect = 6.6
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQ 209
+ +KL ER Y+Q + +N +++ ++L +I +
Sbjct: 118 YDEIKAKKLYNERLSKYEQKA--NFILNIENKNIDELLSEIKKV 159
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 25.3 bits (55), Expect = 6.7
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 179 ERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAK 238
+ QL+ ++ Q E ++ I E E L T + E K
Sbjct: 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIK 63
Query: 239 EEVKEV 244
E+K+
Sbjct: 64 AELKDT 69
>d1umna_ a.25.1.1 (A:) Dodecameric ferritin homolog {Streptococcus
suis [TaxId: 1307]}
Length = 151
Score = 25.4 bits (55), Expect = 6.9
Identities = 8/62 (12%), Positives = 27/62 (43%)
Query: 189 DEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRLTQENESAKEEVKEVLQAL 248
DE + + Y +++ E+++ + +++ + L N + +E++ V++
Sbjct: 42 DEYMEEIDGYLDEMSERLITLGGAPFSTLKEFSENSQLKEVLGDYNVTIEEQLARVVEVF 101
Query: 249 EE 250
Sbjct: 102 RY 103
>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 148
Score = 25.1 bits (55), Expect = 7.2
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 7/57 (12%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
+E Q LE ER+R E I Q+ ++L Q + + L+ R +Q
Sbjct: 2 QECQNLEVERQRRL-------ERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASR 51
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol
transfer protein sec14p {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 24.4 bits (53), Expect = 7.2
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 141 IAPTPESAPASILPAIPGSGLMLGSLSNEERQKLEEERERLYQQLDEK 188
+ P++ P LP G+L + + + L E R+ L +
Sbjct: 7 LESYPQNCPPDALPG------TPGNLDSAQEKALAELRKLLEDAGFIE 48
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal
oligomerisation domain {Escherichia coli [TaxId: 562]}
Length = 95
Score = 24.4 bits (53), Expect = 7.9
Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 163 LGSLSNEERQKLEEERERLYQQLDEKD----EEINQQSQYAEKLKEQIMEQEE 211
L S ++ + + + +QLD + + ++ ++ +KL+ + EE
Sbjct: 38 LESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAEQLEE 90
>d1rp4a_ a.227.1.1 (A:) Endoplasmic oxidoreductin 1, Ero1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 374
Score = 25.6 bits (56), Expect = 8.0
Identities = 11/61 (18%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 150 ASILPAIPGSGLMLGSLS--NEERQKLEEERERLYQQLDEK--DEEINQQSQYAEKLKEQ 205
A + A+ L S + ++++ + + + QLD K +E++ + + LK++
Sbjct: 223 AVVAKALWKIQPYLPEFSFCDLVNKEIKNKMDNVISQLDTKIFNEDLVFANDLSLTLKDE 282
Query: 206 I 206
Sbjct: 283 F 283
>d2p90a1 c.56.8.1 (A:6-274) Hypothetical protein Cgl1923
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 269
Score = 25.4 bits (55), Expect = 8.6
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQ 205
LE + E++++QL E+ EE ++ + L++Q
Sbjct: 228 ALERDAEKVHRQLMEQTEESSEIQRVVGALEQQ 260
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.5 bits (55), Expect = 9.2
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 2/84 (2%)
Query: 169 EERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMT 228
ER K E + + + + Q +E + + E + R + Q
Sbjct: 208 VERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTL 267
Query: 229 --RLTQENESAKEEVKEVLQALEE 250
+L ++ + KE ++ + ++
Sbjct: 268 ALKLQEQEQLLKEGFQKESRIMKN 291
>d2g8la1 e.50.1.1 (A:1-284) Hypothetical protein PH1575 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 284
Score = 25.2 bits (55), Expect = 9.4
Identities = 8/92 (8%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 173 KLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQGEMTRL-- 230
+ + E Q +D + + ++ K + + + + G
Sbjct: 14 QCQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLELYKFLGNDDPFIE 73
Query: 231 --TQENESAKEEVKEVLQALEEPTRTLLNFFR 260
+ E A++ + + L+ +
Sbjct: 74 YKLKSEEMARKVADIIKRKLKLDFELAVKLAI 105
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 24.2 bits (52), Expect = 9.5
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 3/84 (3%)
Query: 166 LSNEERQKLEEERERLYQQLDEKDEEINQQSQYAEKLKEQIMEQEELITTARRDYEQLQG 225
+S+E+ + + L ++ + E+ + + + ++L E++Q
Sbjct: 21 VSSEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDT---GKKLSDDNTIGKEEIQQ 77
Query: 226 EMTRLTQENESAKEEVKEVLQALE 249
+ + + K+ Q LE
Sbjct: 78 RLAQFVDHWKELKQLAAARGQRLE 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.127 0.351
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,014,289
Number of extensions: 46958
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 105
Length of query: 290
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 206
Effective length of database: 1,254,276
Effective search space: 258380856
Effective search space used: 258380856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)