Query psy5722
Match_columns 86
No_of_seqs 119 out of 836
Neff 6.1
Searched_HMMs 46136
Date Sat Aug 17 00:56:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5722.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5722hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0240|consensus 99.8 3.3E-19 7.1E-24 141.6 4.9 71 11-83 3-90 (607)
2 KOG0243|consensus 99.8 6.2E-19 1.3E-23 146.9 6.3 73 12-84 46-137 (1041)
3 KOG0239|consensus 99.7 2.7E-17 5.8E-22 133.4 4.3 73 12-84 311-401 (670)
4 cd01370 KISc_KIP3_like Kinesin 99.6 1.9E-16 4.2E-21 118.8 5.5 69 16-84 1-96 (338)
5 cd01373 KISc_KLP2_like Kinesin 99.6 3.3E-16 7.1E-21 117.5 5.5 69 16-84 2-83 (337)
6 KOG4280|consensus 99.6 2.9E-16 6.2E-21 125.5 4.3 71 14-84 4-94 (574)
7 cd01371 KISc_KIF3 Kinesin moto 99.6 1.1E-15 2.5E-20 114.2 5.7 68 15-84 1-90 (333)
8 cd01367 KISc_KIF2_like Kinesin 99.6 1.1E-15 2.4E-20 114.0 5.4 69 16-84 2-93 (322)
9 cd01369 KISc_KHC_KIF5 Kinesin 99.6 1.8E-15 3.9E-20 112.5 5.7 67 15-84 2-85 (325)
10 cd01365 KISc_KIF1A_KIF1B Kines 99.6 2.2E-15 4.8E-20 113.5 5.8 70 15-84 1-97 (356)
11 cd01368 KISc_KIF23_like Kinesi 99.6 2E-15 4.4E-20 113.7 5.5 69 16-84 2-97 (345)
12 cd01364 KISc_BimC_Eg5 Kinesin 99.6 3E-15 6.5E-20 112.4 5.8 69 14-84 1-90 (352)
13 cd01372 KISc_KIF4 Kinesin moto 99.6 3.5E-15 7.6E-20 111.4 5.2 68 15-84 1-82 (341)
14 KOG0245|consensus 99.6 3.1E-15 6.8E-20 124.9 5.3 68 15-84 4-96 (1221)
15 PLN03188 kinesin-12 family pro 99.5 8.3E-15 1.8E-19 124.2 5.6 69 14-84 97-174 (1320)
16 cd01374 KISc_CENP_E Kinesin mo 99.5 1.1E-14 2.5E-19 108.2 5.5 68 16-84 1-82 (321)
17 KOG0242|consensus 99.5 2.8E-14 6.1E-19 116.0 4.9 72 13-84 4-95 (675)
18 cd01376 KISc_KID_like Kinesin 99.5 5.8E-14 1.3E-18 104.5 5.3 67 16-84 1-89 (319)
19 cd01366 KISc_C_terminal Kinesi 99.4 1.2E-13 2.6E-18 102.7 5.7 70 14-84 1-86 (329)
20 KOG0241|consensus 99.4 1.5E-13 3.3E-18 115.0 5.2 71 14-84 3-102 (1714)
21 smart00129 KISc Kinesin motor, 99.4 9.2E-13 2E-17 98.0 5.8 68 16-84 1-88 (335)
22 cd00106 KISc Kinesin motor dom 99.3 1.4E-12 2.9E-17 96.6 5.5 68 16-84 1-87 (328)
23 cd01375 KISc_KIF9_like Kinesin 99.3 1.9E-12 4.1E-17 97.0 4.8 68 16-84 1-89 (334)
24 PF00225 Kinesin: Kinesin moto 99.2 2.4E-11 5.1E-16 90.2 3.7 63 22-84 1-83 (335)
25 KOG0246|consensus 98.9 1.5E-09 3.2E-14 87.4 5.2 69 13-84 206-300 (676)
26 KOG0247|consensus 98.6 6.5E-08 1.4E-12 79.6 4.4 76 10-85 26-124 (809)
27 COG5059 KIP1 Kinesin-like prot 98.5 8.9E-08 1.9E-12 76.9 4.0 69 15-84 22-98 (568)
28 KOG0244|consensus 98.5 5.9E-08 1.3E-12 81.1 2.1 59 23-83 1-73 (913)
29 cd01363 Motor_domain Myosin an 98.4 1.2E-07 2.6E-12 65.8 2.0 24 61-84 8-32 (186)
30 PF12444 Sox_N: Sox developmen 80.6 1.6 3.4E-05 27.5 2.2 28 57-84 53-82 (84)
31 PF06603 UpxZ: UpxZ family of 74.0 0.96 2.1E-05 29.6 -0.2 17 67-83 55-71 (106)
32 PF15376 DUF4603: Domain of un 48.1 8.1 0.00018 33.8 0.8 47 23-72 1091-1142(1286)
33 PF12746 GNAT_acetyltran: GNAT 46.2 12 0.00026 27.8 1.4 22 60-81 15-38 (265)
34 PF11406 Tachystatin_A: Antimi 45.9 4.3 9.3E-05 22.1 -0.8 14 71-84 5-18 (44)
35 COG4517 Uncharacterized protei 36.1 19 0.00041 23.4 0.9 30 57-86 14-46 (109)
36 COG3245 CycB Cytochrome c5 [En 34.6 22 0.00047 23.9 1.1 12 66-77 88-99 (126)
37 KOG0258|consensus 28.5 30 0.00066 27.9 1.1 72 13-86 212-293 (475)
38 PF01187 MIF: Macrophage migra 28.0 16 0.00035 23.2 -0.4 8 74-81 107-114 (114)
39 PF05127 Helicase_RecD: Helica 26.0 86 0.0019 21.9 2.9 23 64-86 103-125 (177)
40 PF03474 DMA: DMRTA motif; In 24.8 45 0.00097 18.0 1.0 16 64-79 16-31 (39)
41 PF10665 Minor_capsid_1: Minor 23.4 48 0.001 21.6 1.2 14 73-86 58-71 (114)
42 PHA03092 semaphorin-like prote 23.3 57 0.0012 21.9 1.5 18 66-83 30-48 (134)
43 PF03657 UPF0113: Uncharacteri 20.5 35 0.00075 23.6 0.1 12 21-32 1-12 (162)
No 1
>KOG0240|consensus
Probab=99.77 E-value=3.3e-19 Score=141.63 Aligned_cols=71 Identities=41% Similarity=0.567 Sum_probs=59.5
Q ss_pred cccCCCeeEEEeecCCCchhhhcCCceeEecCCCCCcceE---------------EeCCCCCccceee--hhhHHHHHHc
Q psy5722 11 IAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGL---------------SLGIGTASESSSE--HTKLIGDVIT 73 (86)
Q Consensus 11 ~~~~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v---------------~~~~~~tQ~~Vye--~~plV~~vl~ 73 (86)
+...|+|+|+|||||+|..|...++..+..+.+. +..+ +|.+.++|++||+ ++|+|++||.
T Consensus 3 d~~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~--~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~ 80 (607)
T KOG0240|consen 3 DSAECSIKVVCRFRPLNGLENNLGSKFIDCFENG--ENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLL 80 (607)
T ss_pred CCCCCceEEEEEeecCCchhhhcCCcCccCCCCC--cceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhc
Confidence 4477999999999999999998888877766663 1222 3446679999999 9999999999
Q ss_pred ccceeEEeee
Q psy5722 74 GQNDKEKRMT 83 (86)
Q Consensus 74 GYNgTIf~~~ 83 (86)
|||||||+||
T Consensus 81 GYNGTvfaYG 90 (607)
T KOG0240|consen 81 GYNGTVFAYG 90 (607)
T ss_pred ccceeEEEec
Confidence 9999999996
No 2
>KOG0243|consensus
Probab=99.76 E-value=6.2e-19 Score=146.91 Aligned_cols=73 Identities=25% Similarity=0.295 Sum_probs=58.7
Q ss_pred ccCCCeeEEEeecCCCchhhhcCCceeEecCCC-CC--------c----ceE----EeCCCCCccceee--hhhHHHHHH
Q psy5722 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG-GE--------E----NGL----SLGIGTASESSSE--HTKLIGDVI 72 (86)
Q Consensus 12 ~~~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~-~~--------~----~~v----~~~~~~tQ~~Vye--~~plV~~vl 72 (86)
+..-||+|+|||||+|++|.......+|..+.. ++ . ..+ +|++++.|++||+ +.|+|+.||
T Consensus 46 e~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl 125 (1041)
T KOG0243|consen 46 EKEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVL 125 (1041)
T ss_pred CCCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHh
Confidence 344699999999999999998888777776652 10 0 011 3567789999999 999999999
Q ss_pred cccceeEEeeee
Q psy5722 73 TGQNDKEKRMTV 84 (86)
Q Consensus 73 ~GYNgTIf~~~~ 84 (86)
.||||||||||-
T Consensus 126 ~GyNCTIFAYGQ 137 (1041)
T KOG0243|consen 126 EGYNCTIFAYGQ 137 (1041)
T ss_pred ccCCceEEEecC
Confidence 999999999983
No 3
>KOG0239|consensus
Probab=99.68 E-value=2.7e-17 Score=133.37 Aligned_cols=73 Identities=22% Similarity=0.288 Sum_probs=54.6
Q ss_pred ccCCCeeEEEeecCCCchhhhcCCceeEecCCC----------CCcc---eE----EeCCCCCccceee-hhhHHHHHHc
Q psy5722 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG----------GEEN---GL----SLGIGTASESSSE-HTKLIGDVIT 73 (86)
Q Consensus 12 ~~~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~----------~~~~---~v----~~~~~~tQ~~Vye-~~plV~~vl~ 73 (86)
.++|||||+||+||+...|.......++..+.+ .+.. .+ +|++..+|++||+ +.|+|+++||
T Consensus 311 eLkGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lD 390 (670)
T KOG0239|consen 311 ELKGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALD 390 (670)
T ss_pred HhhcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhc
Confidence 478999999999999998876433333222221 0011 12 4567889999999 9999999999
Q ss_pred ccceeEEeeee
Q psy5722 74 GQNDKEKRMTV 84 (86)
Q Consensus 74 GYNgTIf~~~~ 84 (86)
|||.||||||-
T Consensus 391 GYnVCIFAYGQ 401 (670)
T KOG0239|consen 391 GYNVCIFAYGQ 401 (670)
T ss_pred CcceeEEEecc
Confidence 99999999984
No 4
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.64 E-value=1.9e-16 Score=118.82 Aligned_cols=69 Identities=26% Similarity=0.368 Sum_probs=54.0
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCCC---------------------CcceEE----eCCCCCccceee--hhhHH
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG---------------------EENGLS----LGIGTASESSSE--HTKLI 68 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~~---------------------~~~~v~----~~~~~tQ~~Vye--~~plV 68 (86)
+|+|+||+||++.+|...+...++.+.++. +...+. |++..+|++||+ ++|||
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 699999999999999887777666654420 011122 245669999999 88999
Q ss_pred HHHHcccceeEEeeee
Q psy5722 69 GDVITGQNDKEKRMTV 84 (86)
Q Consensus 69 ~~vl~GYNgTIf~~~~ 84 (86)
+++|+|||+|||+||-
T Consensus 81 ~~~~~G~n~~i~ayGq 96 (338)
T cd01370 81 DGVLNGYNATVFAYGA 96 (338)
T ss_pred HHHHCCCCceEEeeCC
Confidence 9999999999999984
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.63 E-value=3.3e-16 Score=117.53 Aligned_cols=69 Identities=23% Similarity=0.253 Sum_probs=53.6
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCCC-------CcceE----EeCCCCCccceee--hhhHHHHHHcccceeEEee
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG-------EENGL----SLGIGTASESSSE--HTKLIGDVITGQNDKEKRM 82 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~~-------~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf~~ 82 (86)
+|||+||+||++..|...+...++....+. ....+ .|++..+|++||+ ++|+|+++|+|||+|||+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aY 81 (337)
T cd01373 2 AVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSHPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAY 81 (337)
T ss_pred CeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCCCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEe
Confidence 799999999999999766666555544320 01222 3457779999999 8999999999999999999
Q ss_pred ee
Q psy5722 83 TV 84 (86)
Q Consensus 83 ~~ 84 (86)
|-
T Consensus 82 Gq 83 (337)
T cd01373 82 GQ 83 (337)
T ss_pred CC
Confidence 84
No 6
>KOG4280|consensus
Probab=99.62 E-value=2.9e-16 Score=125.51 Aligned_cols=71 Identities=18% Similarity=0.243 Sum_probs=55.6
Q ss_pred CCCeeEEEeecCCCchhhhcCCceeEecCCCCC--------------cceE----EeCCCCCccceee--hhhHHHHHHc
Q psy5722 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE--------------ENGL----SLGIGTASESSSE--HTKLIGDVIT 73 (86)
Q Consensus 14 ~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~--------------~~~v----~~~~~~tQ~~Vye--~~plV~~vl~ 73 (86)
.++++|++|+||++..+...+...++.++.... ...+ .|+.+.+|++||+ ++|||++||+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 468999999999999988777766655554210 0112 3456779999999 9999999999
Q ss_pred ccceeEEeeee
Q psy5722 74 GQNDKEKRMTV 84 (86)
Q Consensus 74 GYNgTIf~~~~ 84 (86)
||||||||||=
T Consensus 84 GyNgtvFaYGQ 94 (574)
T KOG4280|consen 84 GYNGTVFAYGQ 94 (574)
T ss_pred ccCceEEEecc
Confidence 99999999983
No 7
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.60 E-value=1.1e-15 Score=114.23 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=54.9
Q ss_pred CCeeEEEeecCCCchhhhcCCceeEecCCCCCcceEE--------------------eCCCCCccceee--hhhHHHHHH
Q psy5722 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS--------------------LGIGTASESSSE--HTKLIGDVI 72 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v~--------------------~~~~~tQ~~Vye--~~plV~~vl 72 (86)
.+|+|+||+||++..|...+...++.++.+ ...+. |+...+|++||+ ++|+|++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDEN--RGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVL 78 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCC--CCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHh
Confidence 479999999999999988777766666543 12221 345669999999 899999999
Q ss_pred cccceeEEeeee
Q psy5722 73 TGQNDKEKRMTV 84 (86)
Q Consensus 73 ~GYNgTIf~~~~ 84 (86)
+|||+|||+||-
T Consensus 79 ~G~n~~i~ayG~ 90 (333)
T cd01371 79 EGYNGTIFAYGQ 90 (333)
T ss_pred CCCceeEEecCC
Confidence 999999999984
No 8
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.60 E-value=1.1e-15 Score=114.01 Aligned_cols=69 Identities=25% Similarity=0.240 Sum_probs=52.8
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCCC-----------------CcceE----EeCCCCCccceee--hhhHHHHHH
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG-----------------EENGL----SLGIGTASESSSE--HTKLIGDVI 72 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~~-----------------~~~~v----~~~~~~tQ~~Vye--~~plV~~vl 72 (86)
+|+|+|||||+++.|...++..++.++.+. +.... .|++..+|++||+ ++|+|+++|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~~ 81 (322)
T cd01367 2 KITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHVF 81 (322)
T ss_pred CeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHHh
Confidence 799999999999999866655554444420 01112 2346669999999 999999999
Q ss_pred cccceeEEeeee
Q psy5722 73 TGQNDKEKRMTV 84 (86)
Q Consensus 73 ~GYNgTIf~~~~ 84 (86)
+|||+|||+||-
T Consensus 82 ~G~n~~i~ayGq 93 (322)
T cd01367 82 EGGVATCFAYGQ 93 (322)
T ss_pred CCCceEEEeccC
Confidence 999999999984
No 9
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.59 E-value=1.8e-15 Score=112.47 Aligned_cols=67 Identities=40% Similarity=0.587 Sum_probs=56.1
Q ss_pred CCeeEEEeecCCCchhhhcCCceeEecCCCCCcceEE---------------eCCCCCccceee--hhhHHHHHHcccce
Q psy5722 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS---------------LGIGTASESSSE--HTKLIGDVITGQND 77 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v~---------------~~~~~tQ~~Vye--~~plV~~vl~GYNg 77 (86)
++|+|+||+||+++.|...+...++.++++ .++. |++..+|++||+ ++|+|+++++|||+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~---~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE---DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC---CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 689999999999999977777777777663 3332 346679999999 89999999999999
Q ss_pred eEEeeee
Q psy5722 78 KEKRMTV 84 (86)
Q Consensus 78 TIf~~~~ 84 (86)
|||+||-
T Consensus 79 ~i~ayG~ 85 (325)
T cd01369 79 TIFAYGQ 85 (325)
T ss_pred eEEEeCC
Confidence 9999995
No 10
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.58 E-value=2.2e-15 Score=113.53 Aligned_cols=70 Identities=26% Similarity=0.339 Sum_probs=54.5
Q ss_pred CCeeEEEeecCCCchhhhcCCceeEecCCC--------------CCcceEE----eCCC-------CCccceee--hhhH
Q psy5722 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSG--------------GEENGLS----LGIG-------TASESSSE--HTKL 67 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E~~~g~~~~v~~~~~--------------~~~~~v~----~~~~-------~tQ~~Vye--~~pl 67 (86)
++|+|+||+||++..|...+...++.+++. .....+. |++. .+|++||+ ++|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999988777766655542 0012222 2344 79999999 8999
Q ss_pred HHHHHcccceeEEeeee
Q psy5722 68 IGDVITGQNDKEKRMTV 84 (86)
Q Consensus 68 V~~vl~GYNgTIf~~~~ 84 (86)
|+++|+|||+|||+||-
T Consensus 81 v~~~l~G~n~~i~ayGq 97 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQ 97 (356)
T ss_pred HHHHhCCCceEEEEecC
Confidence 99999999999999984
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.58 E-value=2e-15 Score=113.68 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=52.6
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCCC---------------------CcceE----EeCCCCCccceee--hhhHH
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGG---------------------EENGL----SLGIGTASESSSE--HTKLI 68 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~~---------------------~~~~v----~~~~~~tQ~~Vye--~~plV 68 (86)
+|+|+||+||++..|...+...++.+.++. .+..+ .|++..+|++||+ ++|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 699999999999999876666555544320 01111 2346679999999 89999
Q ss_pred HHHHcccceeEEeeee
Q psy5722 69 GDVITGQNDKEKRMTV 84 (86)
Q Consensus 69 ~~vl~GYNgTIf~~~~ 84 (86)
+++|+|||+|||+||-
T Consensus 82 ~~~l~G~n~ti~aYGq 97 (345)
T cd01368 82 QDLLKGKNSLLFTYGV 97 (345)
T ss_pred HHHhCCCceEEEEeCC
Confidence 9999999999999984
No 12
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.57 E-value=3e-15 Score=112.45 Aligned_cols=69 Identities=23% Similarity=0.322 Sum_probs=55.1
Q ss_pred CCCeeEEEeecCCCchhhhcCCceeEecCCCCCcceE---------------E----eCCCCCccceee--hhhHHHHHH
Q psy5722 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGL---------------S----LGIGTASESSSE--HTKLIGDVI 72 (86)
Q Consensus 14 ~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v---------------~----~~~~~tQ~~Vye--~~plV~~vl 72 (86)
+.||+|+||+||++..|...++..++.++.+ ...| . |+++.+|++||+ ++|+|++++
T Consensus 1 ~~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~--~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~ 78 (352)
T cd01364 1 ESNIQVVVRCRPRNSRERKEKSSVVVEVSGS--SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVL 78 (352)
T ss_pred CCCEEEEEEcCcCCccccccCCCeEEEEcCC--CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3689999999999999977666666666543 1222 2 245669999999 899999999
Q ss_pred cccceeEEeeee
Q psy5722 73 TGQNDKEKRMTV 84 (86)
Q Consensus 73 ~GYNgTIf~~~~ 84 (86)
+|||+|||+||-
T Consensus 79 ~G~n~~i~ayG~ 90 (352)
T cd01364 79 MGYNCTIFAYGQ 90 (352)
T ss_pred CCCeEEEEECCC
Confidence 999999999984
No 13
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.56 E-value=3.5e-15 Score=111.41 Aligned_cols=68 Identities=25% Similarity=0.323 Sum_probs=54.8
Q ss_pred CCeeEEEeecCCCchhhhcCCceeEecCCCCCcce--------EE----eCCCCCccceee--hhhHHHHHHcccceeEE
Q psy5722 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENG--------LS----LGIGTASESSSE--HTKLIGDVITGQNDKEK 80 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~--------v~----~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf 80 (86)
++|+|+||+||++..|...+...++.+.+. +.. +. |+...+|++||+ ++|+|+++|+|||+|||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~~v~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 1 SSVRVAVRVRPLLPKELLEGCQVCVSVVPG--EPQVTVGTDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CCeEEEEECCCCCchhcccCCCeEEEEeCC--CCEEEecCCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 369999999999999987777666666543 122 22 345679999999 88999999999999999
Q ss_pred eeee
Q psy5722 81 RMTV 84 (86)
Q Consensus 81 ~~~~ 84 (86)
+||-
T Consensus 79 ayG~ 82 (341)
T cd01372 79 AYGQ 82 (341)
T ss_pred eecC
Confidence 9984
No 14
>KOG0245|consensus
Probab=99.56 E-value=3.1e-15 Score=124.95 Aligned_cols=68 Identities=18% Similarity=0.271 Sum_probs=56.3
Q ss_pred CCeeEEEeecCCCchhhhcCCceeEecCCCCCcceE------------EeC-------C----CCCccceee--hhhHHH
Q psy5722 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGL------------SLG-------I----GTASESSSE--HTKLIG 69 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v------------~~~-------~----~~tQ~~Vye--~~plV~ 69 (86)
.+|+|+||+||+|++|....+++++.+..+ ..++ +|+ + ..+|..||+ +.||++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn--~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~ 81 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGN--TTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLD 81 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCC--ceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHH
Confidence 579999999999999998888888888764 2333 222 1 128999999 999999
Q ss_pred HHHcccceeEEeeee
Q psy5722 70 DVITGQNDKEKRMTV 84 (86)
Q Consensus 70 ~vl~GYNgTIf~~~~ 84 (86)
.+++|||+||||||=
T Consensus 82 ~AfEGYN~ClFAYGQ 96 (1221)
T KOG0245|consen 82 HAFEGYNVCLFAYGQ 96 (1221)
T ss_pred HHhcccceEEEEecc
Confidence 999999999999983
No 15
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.53 E-value=8.3e-15 Score=124.19 Aligned_cols=69 Identities=19% Similarity=0.351 Sum_probs=51.7
Q ss_pred CCCeeEEEeecCCCchhhhcCCceeEecCCCC---CcceE----EeCCCCCccceee--hhhHHHHHHcccceeEEeeee
Q psy5722 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGG---EENGL----SLGIGTASESSSE--HTKLIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 14 ~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~---~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf~~~~ 84 (86)
+++|+|+||+||++..|. +...+..+..+. ....+ .|++..+|++||+ ++|||+++|+|||+||||||-
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s~dsl~I~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQ 174 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQKMSNDSLTINGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQ 174 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEEcCCCeEEEeCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCC
Confidence 569999999999998863 444444333310 01222 3467789999999 899999999999999999994
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.53 E-value=1.1e-14 Score=108.15 Aligned_cols=68 Identities=18% Similarity=0.247 Sum_probs=51.7
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCC--------CCcceE----EeCCCCCccceee--hhhHHHHHHcccceeEEe
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSG--------GEENGL----SLGIGTASESSSE--HTKLIGDVITGQNDKEKR 81 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~--------~~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf~ 81 (86)
+|+|+||+||++..|.. +...++.++.+ .....+ .|+...+|++||+ ++|+|+++|+|||+|||+
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 69999999999999873 34445544442 001222 3456679999999 899999999999999999
Q ss_pred eee
Q psy5722 82 MTV 84 (86)
Q Consensus 82 ~~~ 84 (86)
||-
T Consensus 80 yG~ 82 (321)
T cd01374 80 YGQ 82 (321)
T ss_pred ecC
Confidence 984
No 17
>KOG0242|consensus
Probab=99.48 E-value=2.8e-14 Score=115.99 Aligned_cols=72 Identities=25% Similarity=0.288 Sum_probs=52.0
Q ss_pred cCCCeeEEEeecCCCchhhhcCCceeEecCCC-----------CCc---ceE----EeCCCCCccceee--hhhHHHHHH
Q psy5722 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG-----------GEE---NGL----SLGIGTASESSSE--HTKLIGDVI 72 (86)
Q Consensus 13 ~~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~-----------~~~---~~v----~~~~~~tQ~~Vye--~~plV~~vl 72 (86)
.+..|.|+||+||++.+|...+.........+ .+. ... +|+.+.+|++||+ ++|||++||
T Consensus 4 ~~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 4 TEEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ccceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 34689999999999998654444322111111 000 112 4567889999999 999999999
Q ss_pred cccceeEEeeee
Q psy5722 73 TGQNDKEKRMTV 84 (86)
Q Consensus 73 ~GYNgTIf~~~~ 84 (86)
.||||||||||.
T Consensus 84 ~G~N~TVFAYG~ 95 (675)
T KOG0242|consen 84 EGFNATVFAYGQ 95 (675)
T ss_pred cCcccceeeecC
Confidence 999999999995
No 18
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.47 E-value=5.8e-14 Score=104.53 Aligned_cols=67 Identities=27% Similarity=0.330 Sum_probs=48.3
Q ss_pred CeeEEEeecCCCchhhhcCCceeEec-CCC---------------CCcceE----EeCCCCCccceee--hhhHHHHHHc
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKF-PSG---------------GEENGL----SLGIGTASESSSE--HTKLIGDVIT 73 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~-~~~---------------~~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~ 73 (86)
+|+|+||+||+++.|.. ...++.. +.+ .+...+ .|+...+|++||+ ++|+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~--~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEED--SSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccC--CCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 69999999999988842 2222222 221 001112 2346679999999 9999999999
Q ss_pred ccceeEEeeee
Q psy5722 74 GQNDKEKRMTV 84 (86)
Q Consensus 74 GYNgTIf~~~~ 84 (86)
|||+|||+||-
T Consensus 79 G~n~~i~ayG~ 89 (319)
T cd01376 79 GQNATVFAYGS 89 (319)
T ss_pred CCceEEEEECC
Confidence 99999999984
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.45 E-value=1.2e-13 Score=102.73 Aligned_cols=70 Identities=26% Similarity=0.398 Sum_probs=51.5
Q ss_pred CCCeeEEEeecCCCchhhhcCCceeEecCCC-----------CCcceE----EeCCCCCccceee-hhhHHHHHHcccce
Q psy5722 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG-----------GEENGL----SLGIGTASESSSE-HTKLIGDVITGQND 77 (86)
Q Consensus 14 ~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~-----------~~~~~v----~~~~~~tQ~~Vye-~~plV~~vl~GYNg 77 (86)
+++|+|+||+||+...|. .....++.++++ .+...+ .|+.+.+|++||+ ++|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSES-TEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCcccc-CCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 478999999999999875 222233344432 001222 2346679999999 99999999999999
Q ss_pred eEEeeee
Q psy5722 78 KEKRMTV 84 (86)
Q Consensus 78 TIf~~~~ 84 (86)
|||+||-
T Consensus 80 ~i~ayG~ 86 (329)
T cd01366 80 CIFAYGQ 86 (329)
T ss_pred EEEEeCC
Confidence 9999984
No 20
>KOG0241|consensus
Probab=99.42 E-value=1.5e-13 Score=115.02 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=55.9
Q ss_pred CCCeeEEEeecCCCchhhhcCCceeEecCCCCC----------------cceEEeC-----------CCCCccceee--h
Q psy5722 14 EDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE----------------ENGLSLG-----------IGTASESSSE--H 64 (86)
Q Consensus 14 ~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~----------------~~~v~~~-----------~~~tQ~~Vye--~ 64 (86)
..+|||+||+||+|.+|++...++++.++.... +.++.|+ .-+.|++||+ +
T Consensus 3 ~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 3 DAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred CcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 468999999999999999998888888876310 1112221 1128999999 8
Q ss_pred hhHHHHHHcccceeEEeeee
Q psy5722 65 TKLIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 65 ~plV~~vl~GYNgTIf~~~~ 84 (86)
.-+|+++|+|||+|||+||-
T Consensus 83 ~~il~naf~GyNaCifaYGQ 102 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQ 102 (1714)
T ss_pred hHHHHHHhhccceeeEEecc
Confidence 88999999999999999983
No 21
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.37 E-value=9.2e-13 Score=97.97 Aligned_cols=68 Identities=31% Similarity=0.412 Sum_probs=53.9
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCCCCcceEE------------------eCCCCCccceee--hhhHHHHHHccc
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLS------------------LGIGTASESSSE--HTKLIGDVITGQ 75 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v~------------------~~~~~tQ~~Vye--~~plV~~vl~GY 75 (86)
+|+|+||+||++..|...+...++.+..+. ..++. |+.+.+|+++|+ ++|+|+++++||
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~ 79 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKD-GKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGY 79 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCC-CCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCC
Confidence 589999999999999877766666665421 12222 345669999999 889999999999
Q ss_pred ceeEEeeee
Q psy5722 76 NDKEKRMTV 84 (86)
Q Consensus 76 NgTIf~~~~ 84 (86)
|+|||+||-
T Consensus 80 ~~~i~~yG~ 88 (335)
T smart00129 80 NATIFAYGQ 88 (335)
T ss_pred ceeEEEeCC
Confidence 999999985
No 22
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.35 E-value=1.4e-12 Score=96.57 Aligned_cols=68 Identities=24% Similarity=0.320 Sum_probs=49.3
Q ss_pred CeeEEEeecCCCchhhhcCCceeEecCCC-------------CCcceE----EeCCCCCccceee--hhhHHHHHHcccc
Q psy5722 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSG-------------GEENGL----SLGIGTASESSSE--HTKLIGDVITGQN 76 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~g~~~~v~~~~~-------------~~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYN 76 (86)
+|+|+||+||+...|. .+...++.++.+ ..+... .|+.+.+|++||+ ++|+|+++++|||
T Consensus 1 ~i~V~vRvrP~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRES-KSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCcccc-cCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 5899999999998762 233344444441 001222 2346679999999 8899999999999
Q ss_pred eeEEeeee
Q psy5722 77 DKEKRMTV 84 (86)
Q Consensus 77 gTIf~~~~ 84 (86)
+|||+||-
T Consensus 80 ~~i~~yG~ 87 (328)
T cd00106 80 GTIFAYGQ 87 (328)
T ss_pred eeEEEecC
Confidence 99999995
No 23
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.31 E-value=1.9e-12 Score=97.01 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=45.7
Q ss_pred CeeEEEeecCCCchhhhc------CCceeEecCCC---------CCcceEE----eCCCCCccceee--hhhHHHHHHcc
Q psy5722 16 SIRVVCRFRPLNHSEEKA------GSKFIVKFPSG---------GEENGLS----LGIGTASESSSE--HTKLIGDVITG 74 (86)
Q Consensus 16 nIrV~vRvRPln~~E~~~------g~~~~v~~~~~---------~~~~~v~----~~~~~tQ~~Vye--~~plV~~vl~G 74 (86)
.|||+||+||++..|... +...-+..+.+ .+...+. |+. .+|++||+ ++|+|+++|+|
T Consensus 1 ~i~V~vRvRP~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G 79 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSALDG 79 (334)
T ss_pred CeEEEEECCCCCCCCCccEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHHhCC
Confidence 489999999999854321 01001111111 0012233 346 89999999 89999999999
Q ss_pred cceeEEeeee
Q psy5722 75 QNDKEKRMTV 84 (86)
Q Consensus 75 YNgTIf~~~~ 84 (86)
||+|||+||-
T Consensus 80 ~n~~i~ayG~ 89 (334)
T cd01375 80 YNGTIFAYGQ 89 (334)
T ss_pred CccceeeecC
Confidence 9999999984
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.16 E-value=2.4e-11 Score=90.18 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=46.5
Q ss_pred eecCCCchhhhcCCceeEecCCC--------------CCcceE----EeCCCCCccceee--hhhHHHHHHcccceeEEe
Q psy5722 22 RFRPLNHSEEKAGSKFIVKFPSG--------------GEENGL----SLGIGTASESSSE--HTKLIGDVITGQNDKEKR 81 (86)
Q Consensus 22 RvRPln~~E~~~g~~~~v~~~~~--------------~~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf~ 81 (86)
|+||++..|...+...++..... ...... .|+...+|++||+ ++|+|+++|+|||+|||+
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999998887765543310 001112 3457789999999 899999999999999999
Q ss_pred eee
Q psy5722 82 MTV 84 (86)
Q Consensus 82 ~~~ 84 (86)
||.
T Consensus 81 yG~ 83 (335)
T PF00225_consen 81 YGQ 83 (335)
T ss_dssp EES
T ss_pred ecc
Confidence 995
No 25
>KOG0246|consensus
Probab=98.92 E-value=1.5e-09 Score=87.40 Aligned_cols=69 Identities=23% Similarity=0.235 Sum_probs=57.4
Q ss_pred cCCCeeEEEeecCCCchhhhcCCceeEecCCCCCcceE------------------------EeCCCCCccceee--hhh
Q psy5722 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGL------------------------SLGIGTASESSSE--HTK 66 (86)
Q Consensus 13 ~~~nIrV~vRvRPln~~E~~~g~~~~v~~~~~~~~~~v------------------------~~~~~~tQ~~Vye--~~p 66 (86)
.+..|.|+||=||||.+|....+.-+++++++ +.+ .|+...+.+.||. ++|
T Consensus 206 ~ehrI~VCVRKRPLnkkE~~~keiDvisvps~---~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P 282 (676)
T KOG0246|consen 206 NEHRICVCVRKRPLNKKELTKKEIDVISVPSK---NVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP 282 (676)
T ss_pred ccceEEEEeecCCCCchhccccccceEecccc---ceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence 44579999999999999998877777777663 221 3456679999999 999
Q ss_pred HHHHHHcccceeEEeeee
Q psy5722 67 LIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 67 lV~~vl~GYNgTIf~~~~ 84 (86)
||+.+++|=-+|+||||-
T Consensus 283 lV~~IF~~G~ATCFAYGQ 300 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQ 300 (676)
T ss_pred HHHHHHhCCceeeeeecc
Confidence 999999999999999983
No 26
>KOG0247|consensus
Probab=98.56 E-value=6.5e-08 Score=79.64 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=51.5
Q ss_pred ccccCCCeeEEEeecCCCchhhhcCCceeEe------c-CCC--------CC--cceE----EeCCCCCccceee--hhh
Q psy5722 10 EIAAEDSIRVVCRFRPLNHSEEKAGSKFIVK------F-PSG--------GE--ENGL----SLGIGTASESSSE--HTK 66 (86)
Q Consensus 10 ~~~~~~nIrV~vRvRPln~~E~~~g~~~~v~------~-~~~--------~~--~~~v----~~~~~~tQ~~Vye--~~p 66 (86)
+......+.|+||+||+...-...|+-.++. . +.+ .. +..+ .|++..+|.+||+ +.|
T Consensus 26 S~~~~d~v~v~~rvrP~~~~~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~p 105 (809)
T KOG0247|consen 26 SCESKDPVLVVCRVRPLSDASEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAP 105 (809)
T ss_pred chhhhcchheeEeecCCCCCccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHH
Confidence 3445567999999999985322333322211 1 110 00 0111 3567789999999 999
Q ss_pred HHHHHHcccceeEEeeeec
Q psy5722 67 LIGDVITGQNDKEKRMTVH 85 (86)
Q Consensus 67 lV~~vl~GYNgTIf~~~~~ 85 (86)
||.++|.|-|+-+|-|||-
T Consensus 106 lV~dlLkgqn~LlFTyGVT 124 (809)
T KOG0247|consen 106 LVKDLLKGQNSLLFTYGVT 124 (809)
T ss_pred HHHHHHcccceeEEEeecc
Confidence 9999999999999999984
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.52 E-value=8.9e-08 Score=76.89 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=45.8
Q ss_pred CCeeEEEeecCCCchh-hhc-CCceeEecCCCCCcceE----EeCCCCCccceee--hhhHHHHHHcccceeEEeeee
Q psy5722 15 DSIRVVCRFRPLNHSE-EKA-GSKFIVKFPSGGEENGL----SLGIGTASESSSE--HTKLIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 15 ~nIrV~vRvRPln~~E-~~~-g~~~~v~~~~~~~~~~v----~~~~~~tQ~~Vye--~~plV~~vl~GYNgTIf~~~~ 84 (86)
.++++.++.+|-...+ ... .....+...... ...+ .|++..+|++||+ ++|+++++|.|||||||+||-
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGq 98 (568)
T COG5059 22 SDIKSTIRIIPGELGERLINTSKKSHVSLEKSK-EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQ 98 (568)
T ss_pred cCceEEEeecCCCcchheeeccccccccccccc-ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcc
Confidence 4678888888865543 111 111112121110 1223 4567789999999 999999999999999999983
No 28
>KOG0244|consensus
Probab=98.48 E-value=5.9e-08 Score=81.15 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=49.7
Q ss_pred ecCCCchhhhcCCceeEecCCCCCcceEEeCC------------CCCccceee--hhhHHHHHHcccceeEEeee
Q psy5722 23 FRPLNHSEEKAGSKFIVKFPSGGEENGLSLGI------------GTASESSSE--HTKLIGDVITGQNDKEKRMT 83 (86)
Q Consensus 23 vRPln~~E~~~g~~~~v~~~~~~~~~~v~~~~------------~~tQ~~Vye--~~plV~~vl~GYNgTIf~~~ 83 (86)
+|||..+|...|+..|+++.+. ..++.+++ ...|.++|+ +.||++.+++|||+|+-|||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~--~pqv~ig~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlayg 73 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPR--TPQVAIGKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYG 73 (913)
T ss_pred CCCccchHHHhcchhhcccCCC--CCceeecCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeec
Confidence 6999999999999999885443 45565543 337999999 99999999999999999998
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.42 E-value=1.2e-07 Score=65.77 Aligned_cols=24 Identities=13% Similarity=-0.057 Sum_probs=21.9
Q ss_pred eee-hhhHHHHHHcccceeEEeeee
Q psy5722 61 SSE-HTKLIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 61 Vye-~~plV~~vl~GYNgTIf~~~~ 84 (86)
||+ +.|+|+++++|||+|||+||-
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~ 32 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQ 32 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECC
Confidence 899 449999999999999999984
No 30
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=80.61 E-value=1.6 Score=27.45 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=23.0
Q ss_pred Cccceee--hhhHHHHHHcccceeEEeeee
Q psy5722 57 ASESSSE--HTKLIGDVITGQNDKEKRMTV 84 (86)
Q Consensus 57 tQ~~Vye--~~plV~~vl~GYNgTIf~~~~ 84 (86)
..++-|- ++.-|-.||+||.+|+--|.|
T Consensus 53 ~~d~~fp~~IrdAVsqVLkGYDWtLVPmPv 82 (84)
T PF12444_consen 53 DEDDRFPVCIRDAVSQVLKGYDWTLVPMPV 82 (84)
T ss_pred cccccccHHHHHHHHHHhccCCceeeeccc
Confidence 3455566 999999999999999988865
No 31
>PF06603 UpxZ: UpxZ family of transcription anti-terminator antagonists; InterPro: IPR010570 This family consists of several hypothetical proteins of unknown function and seems to be specific to Bacteroides species.
Probab=73.97 E-value=0.96 Score=29.64 Aligned_cols=17 Identities=18% Similarity=0.048 Sum_probs=14.0
Q ss_pred HHHHHHcccceeEEeee
Q psy5722 67 LIGDVITGQNDKEKRMT 83 (86)
Q Consensus 67 lV~~vl~GYNgTIf~~~ 83 (86)
|-=+.|-|||+||+..|
T Consensus 55 lCLaLLmGYnat~yd~g 71 (106)
T PF06603_consen 55 LCLALLMGYNATIYDNG 71 (106)
T ss_pred HHHHHHHhccchhhhCc
Confidence 55568899999999865
No 32
>PF15376 DUF4603: Domain of unknown function (DUF4603)
Probab=48.06 E-value=8.1 Score=33.83 Aligned_cols=47 Identities=26% Similarity=0.251 Sum_probs=30.6
Q ss_pred ecCCCchhhhcCCceeEecCCCCCcceEEeCCCCCccceee-----hhhHHHHHH
Q psy5722 23 FRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSE-----HTKLIGDVI 72 (86)
Q Consensus 23 vRPln~~E~~~g~~~~v~~~~~~~~~~v~~~~~~tQ~~Vye-----~~plV~~vl 72 (86)
|||++..|+.-|.-.--.+...+++.. | +-.+|.+||+ .|||=+++=
T Consensus 1091 FRPISAsELSPgggSeSe~esek~ea~--~-P~~~q~dvF~DPQaDLKPLEEDAE 1142 (1286)
T PF15376_consen 1091 FRPISASELSPGGGSESEFESEKDEAS--I-PIPSQVDVFEDPQADLKPLEEDAE 1142 (1286)
T ss_pred cccccHhhcCCCCCchhhccccccccC--C-CCCCccccccCchhccccchhhhh
Confidence 899999998765543333444321221 1 4458999998 899988764
No 33
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=46.24 E-value=12 Score=27.81 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=16.4
Q ss_pred ceee--hhhHHHHHHcccceeEEe
Q psy5722 60 SSSE--HTKLIGDVITGQNDKEKR 81 (86)
Q Consensus 60 ~Vye--~~plV~~vl~GYNgTIf~ 81 (86)
.+|+ -..+|.++|+|+.|.||.
T Consensus 15 ~lF~~~~~~~v~s~L~G~~G~vyV 38 (265)
T PF12746_consen 15 PLFEDWEETIVWSILQGHMGRVYV 38 (265)
T ss_dssp HHH-S---HHHHHHHHSSSSEEEE
T ss_pred HHHcCchHHHHHHHHcCCceEEEE
Confidence 3555 566999999999999986
No 34
>PF11406 Tachystatin_A: Antimicrobial peptide tachystatin A; InterPro: IPR022717 Tachystatin A contains a cysteine-stabilised triple-stranded beta-sheet and shows features common to membrane-interactive peptides. Tachystatin A is thought to have an antimicrobial activity similar to defensins.Tachystatin A is also a chitin-binding peptide []. ; PDB: 1CIX_A.
Probab=45.95 E-value=4.3 Score=22.09 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=7.9
Q ss_pred HHcccceeEEeeee
Q psy5722 71 VITGQNDKEKRMTV 84 (86)
Q Consensus 71 vl~GYNgTIf~~~~ 84 (86)
-|+|||+.+-.||.
T Consensus 5 qlqgfncvvrsygl 18 (44)
T PF11406_consen 5 QLQGFNCVVRSYGL 18 (44)
T ss_dssp --TTEEE-S--TTS
T ss_pred eecccceEEEccCC
Confidence 47899999988875
No 35
>COG4517 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.07 E-value=19 Score=23.43 Aligned_cols=30 Identities=27% Similarity=0.235 Sum_probs=23.2
Q ss_pred Cccceee--hhhHHHHHHccccee-EEeeeecC
Q psy5722 57 ASESSSE--HTKLIGDVITGQNDK-EKRMTVHS 86 (86)
Q Consensus 57 tQ~~Vye--~~plV~~vl~GYNgT-If~~~~~~ 86 (86)
.|..+|+ ++.++.|-|=|||-- -|.+++||
T Consensus 14 NqGkvyelYar~i~sS~LwGF~EI~efVFd~~s 46 (109)
T COG4517 14 NQGKVYELYARCIISSHLWGFNEISEFVFDVHS 46 (109)
T ss_pred eCCeeeehhHhhHhhhhhhhhhhHHHHhccccc
Confidence 7889999 999999999999852 34455543
No 36
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=34.57 E-value=22 Score=23.94 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=10.6
Q ss_pred hHHHHHHcccce
Q psy5722 66 KLIGDVITGQND 77 (86)
Q Consensus 66 plV~~vl~GYNg 77 (86)
-|++.+|+|||+
T Consensus 88 tL~~hai~GfnA 99 (126)
T COG3245 88 TLLDHAINGFNA 99 (126)
T ss_pred HHHHHHhccccC
Confidence 489999999996
No 37
>KOG0258|consensus
Probab=28.51 E-value=30 Score=27.91 Aligned_cols=72 Identities=15% Similarity=0.113 Sum_probs=49.6
Q ss_pred cCCCeeEEEeecCCCchhhhcCCc---eeEecCCCCCcceEEeCCCCCccceee-------hhhHHHHHHcccceeEEee
Q psy5722 13 AEDSIRVVCRFRPLNHSEEKAGSK---FIVKFPSGGEENGLSLGIGTASESSSE-------HTKLIGDVITGQNDKEKRM 82 (86)
Q Consensus 13 ~~~nIrV~vRvRPln~~E~~~g~~---~~v~~~~~~~~~~v~~~~~~tQ~~Vye-------~~plV~~vl~GYNgTIf~~ 82 (86)
..+++||.|=+-|-|..-.....+ .++.+... ...+.+..+--|+.||. .|.++...=+=|+.+++-.
T Consensus 212 k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~--~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~ 289 (475)
T KOG0258|consen 212 KGINPRALVVINPGNPTGQVLSEENIEGIICFAAE--EGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLA 289 (475)
T ss_pred ccCCceEEEEECCCCccchhhcHHHHHHHHHHHHH--cCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEE
Confidence 567899999999988754433222 23334432 34455666668888887 5666766667899999999
Q ss_pred eecC
Q psy5722 83 TVHS 86 (86)
Q Consensus 83 ~~~~ 86 (86)
.+||
T Consensus 290 SfhS 293 (475)
T KOG0258|consen 290 SFHS 293 (475)
T ss_pred eeec
Confidence 9886
No 38
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=27.96 E-value=16 Score=23.20 Aligned_cols=8 Identities=25% Similarity=0.165 Sum_probs=6.4
Q ss_pred ccceeEEe
Q psy5722 74 GQNDKEKR 81 (86)
Q Consensus 74 GYNgTIf~ 81 (86)
|||||.|+
T Consensus 107 g~nG~tf~ 114 (114)
T PF01187_consen 107 GWNGTTFA 114 (114)
T ss_dssp EETTEESC
T ss_pred eeCcEEcC
Confidence 88888775
No 39
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=26.00 E-value=86 Score=21.91 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=20.3
Q ss_pred hhhHHHHHHcccceeEEeeeecC
Q psy5722 64 HTKLIGDVITGQNDKEKRMTVHS 86 (86)
Q Consensus 64 ~~plV~~vl~GYNgTIf~~~~~~ 86 (86)
-.|++..++.+|.-+||+=|+|.
T Consensus 103 p~p~L~~ll~~~~~vv~stTi~G 125 (177)
T PF05127_consen 103 PLPLLKQLLRRFPRVVFSTTIHG 125 (177)
T ss_dssp -HHHHHHHHCCSSEEEEEEEBSS
T ss_pred CHHHHHHHHhhCCEEEEEeeccc
Confidence 55799999999999999999984
No 40
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=24.80 E-value=45 Score=18.05 Aligned_cols=16 Identities=6% Similarity=0.113 Sum_probs=12.6
Q ss_pred hhhHHHHHHcccceeE
Q psy5722 64 HTKLIGDVITGQNDKE 79 (86)
Q Consensus 64 ~~plV~~vl~GYNgTI 79 (86)
=+..++.+|+|+||-|
T Consensus 16 kr~~Le~iL~~C~GDv 31 (39)
T PF03474_consen 16 KRSVLELILQRCNGDV 31 (39)
T ss_pred ChHHHHHHHHHcCCcH
Confidence 3568899999999854
No 41
>PF10665 Minor_capsid_1: Minor capsid protein; InterPro: IPR019612 This entry is represented by Bacteriophage A118, Gp9. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a putative tail-knob protein from Listeria phage A118.
Probab=23.36 E-value=48 Score=21.61 Aligned_cols=14 Identities=21% Similarity=-0.135 Sum_probs=10.9
Q ss_pred cccceeEEeeeecC
Q psy5722 73 TGQNDKEKRMTVHS 86 (86)
Q Consensus 73 ~GYNgTIf~~~~~~ 86 (86)
.++||+||-|..+|
T Consensus 58 ~~~~avlFida~~S 71 (114)
T PF10665_consen 58 VVANAVLFIDAVNS 71 (114)
T ss_pred EEeeeEEEEecCcC
Confidence 36788999988765
No 42
>PHA03092 semaphorin-like protein; Provisional
Probab=23.34 E-value=57 Score=21.93 Aligned_cols=18 Identities=39% Similarity=0.499 Sum_probs=14.6
Q ss_pred hHHHHHH-cccceeEEeee
Q psy5722 66 KLIGDVI-TGQNDKEKRMT 83 (86)
Q Consensus 66 plV~~vl-~GYNgTIf~~~ 83 (86)
=|+++|| .|.||.|+.+.
T Consensus 30 yliddvlytgvngavytfs 48 (134)
T PHA03092 30 YLIDDVLYTGVNGAVYTFS 48 (134)
T ss_pred hhhhhhhccccCceEEEec
Confidence 3889998 69999998663
No 43
>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.
Probab=20.51 E-value=35 Score=23.64 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=7.8
Q ss_pred EeecCCCchhhh
Q psy5722 21 CRFRPLNHSEEK 32 (86)
Q Consensus 21 vRvRPln~~E~~ 32 (86)
.|+|||++.|..
T Consensus 1 m~mR~Lt~eE~~ 12 (162)
T PF03657_consen 1 MKMRPLTEEETK 12 (162)
T ss_dssp -EEEE--HHHHH
T ss_pred CCCCCCCHHHHH
Confidence 389999999975
Done!