RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5722
(86 letters)
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 52.6 bits (127), Expect = 7e-10
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 6 PADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG 53
A+REI AEDSI+VVCRFRPLN SEEKAGSKF+VKFP+ EEN +S+
Sbjct: 2 SAEREIPAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIA 49
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K*
1mkj_A* 2kin_A* 3kin_A*
Length = 325
Score = 48.0 bits (115), Expect = 3e-08
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPS 43
AE +I+V+CRFRPLN SE G K+I KF
Sbjct: 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG 35
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil,
microtubule, motor protein; HET: ADP; 1.80A {Homo
sapiens} PDB: 3b6v_A*
Length = 372
Score = 46.8 bits (112), Expect = 7e-08
Identities = 16/60 (26%), Positives = 25/60 (41%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESS 61
S+ + +S+RVV R RP+N E+ A +V + + GTA E
Sbjct: 8 SSGRENLYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMP 67
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 46.1 bits (110), Expect = 1e-07
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE 47
N + + +I+V R RPLN E S +V E
Sbjct: 10 GGNTSRQPQKKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREV 55
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor
protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus
musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A*
1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A*
2hxf_C* 1ia0_K* 2hxh_C*
Length = 366
Score = 46.0 bits (110), Expect = 2e-07
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG 44
A S++V R RP N E SK I++
Sbjct: 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGS 33
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP;
2.3A {Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 45.6 bits (109), Expect = 2e-07
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPS 43
++ +SI+VV RFRP N E ++G + IV F
Sbjct: 3 SSANSIKVVARFRPQNRVEIESGGQPIVTFQG 34
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 5 APADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE 47
A E +RV R RPL E G + ++ G
Sbjct: 1 GAMGLPGAEEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGR 43
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 45.3 bits (108), Expect = 2e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSG 44
A E ++ V R RPLN EE G V + +
Sbjct: 1 AEEGAVAVCVRVRPLNSREESLGETAQVYWKTD 33
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 44.5 bits (106), Expect = 4e-07
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 9 REIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESS 61
++ +I+VV R RP N +E KA + IV+ +E + G S
Sbjct: 2 KKEEKGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSR 54
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 44.1 bits (105), Expect = 7e-07
Identities = 9/52 (17%), Positives = 17/52 (32%), Gaps = 1/52 (1%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLG 53
+ E A ++R+ R P +V+FP + L +
Sbjct: 9 DDKRRRGMEGAKLSAVRIAVREAPYR-QFLGRREPSVVQFPPWSDGKSLIVD 59
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 44.1 bits (105), Expect = 7e-07
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE 47
+ D+I+V+ R RPLN E + + I++ +
Sbjct: 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQ 36
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum}
SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 43.8 bits (104), Expect = 7e-07
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
IRV CR RPL E A + ++
Sbjct: 6 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFT 36
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 43.8 bits (104), Expect = 8e-07
Identities = 8/45 (17%), Positives = 11/45 (24%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
S+ +RV R RP A V+
Sbjct: 8 SSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCS 52
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 43.8 bits (104), Expect = 9e-07
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHT 65
+IRV R RP + E + + I S+ + ++ H
Sbjct: 60 NIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHE 109
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor
protein, microtubinding proteinbule, contractIle
protein; HET: ADP; 1.30A {Saccharomyces cerevisiae}
SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 43.7 bits (104), Expect = 1e-06
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHT 65
+IRV CR RP + E + + I S+ + ++ H
Sbjct: 4 NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHE 53
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 43.4 bits (103), Expect = 1e-06
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHT 65
+IRV CR RP +E + S +++ + SL I +
Sbjct: 6 NIRVYCRVRPPLLNEPQDMSHILIEKF-NEAKGAQSLTINRNEGRILSYN 54
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free,
transport protein; 1.60A {Plasmodium falciparum} SCOP:
c.37.1.9
Length = 360
Score = 41.8 bits (99), Expect = 4e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
I+VV R RPL+ E+K I+ +
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCT 31
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 41.1 bits (97), Expect = 7e-06
Identities = 9/48 (18%), Positives = 16/48 (33%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSE 63
+IRV CR RP+ E ++ G + + +
Sbjct: 23 NIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERR 70
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 40.8 bits (96), Expect = 9e-06
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEE 47
+ A + ++RVV R R E + ++ IV+ E
Sbjct: 25 DDTASSFVSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPATER 70
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 40.6 bits (96), Expect = 1e-05
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 12 AAEDSIRVVCRFRPLNHSEEKAGS-KFIVKFPSGGEE 47
++ +IRV+ R RP+ + + V F + +
Sbjct: 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDS 37
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 40.2 bits (95), Expect = 1e-05
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKF 41
++V R RP+N E +K +V
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDV 27
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 39.6 bits (93), Expect = 3e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHTK 66
D+IRV CR RP SEE +E+ + L A S +
Sbjct: 59 DNIRVFCRIRPPLESEENRMCCTWTYH----DESTVELQSIDAQAKSKMGQQ 106
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 36.8 bits (86), Expect = 2e-04
Identities = 12/46 (26%), Positives = 16/46 (34%)
Query: 1 MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
M + + E I V R RPLN E ++ PS
Sbjct: 57 MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCL 102
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection,
cytoskeleton, glycoprotein, microtubule; HET: ADP;
2.20A {Homo sapiens}
Length = 355
Score = 36.5 bits (85), Expect = 3e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 15 DSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHTKLIGDVITG 74
++VV R RP N E+ AG +V +++ L S K +
Sbjct: 10 HHMKVVVRVRPENTKEKAAGFHKVVHVV---DKHILVFDPKQEEVSFFHGKKTTNQNVIK 66
Query: 75 QNDKEKRMT 83
+ +K+ +
Sbjct: 67 KQNKDLKFV 75
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural
protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 36.1 bits (84), Expect = 4e-04
Identities = 11/46 (23%), Positives = 16/46 (34%)
Query: 1 MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
+ + + E I V R RPLN E ++ PS
Sbjct: 37 LECHPLTMTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCL 82
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural
genomics, structural genomics consortium, SGC,
contractIle protein; HET: ADP; 2.00A {Homo sapiens}
PDB: 3nwn_A*
Length = 358
Score = 34.6 bits (80), Expect = 0.001
Identities = 3/31 (9%), Positives = 9/31 (29%)
Query: 2 SNNAPADREIAAEDSIRVVCRFRPLNHSEEK 32
++ R + R +P + +
Sbjct: 10 HSSGLVPRGSGTRKKVHAFVRVKPTDDFAHE 40
>3bal_A Acetylacetone-cleaving enzyme; jelly roll, tetramer, dioxygenase,
iron, metal-binding, oxidoreductase; 1.95A
{Acinetobacter johnsonii}
Length = 153
Score = 25.8 bits (56), Expect = 1.7
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 21 CRFRPLNHSEEKAGSKFIVKFPSGGE 46
++ L+ S E + I P+G
Sbjct: 33 ITWQLLHSSPETSSWTAIFNCPAGSS 58
>2o1q_A Putative acetyl/propionyl-COA carboxylase, alpha; putative
acetylacetone dioxygenase, structural genomics; HET:
MSE PG4; 1.50A {Methylibium petroleiphilum} SCOP:
b.82.1.21
Length = 145
Score = 24.6 bits (53), Expect = 4.1
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 22 RFRPLNHSEEKAGSKFIVKFPSGGE 46
R++ L+ S E I P+G
Sbjct: 32 RWKLLHVSPEMGSWTAIFDCPAGSS 56
>3cjx_A Protein of unknown function with A cupin-like FOL; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: MSE; 2.60A
{Ralstonia eutropha}
Length = 165
Score = 24.3 bits (52), Expect = 6.0
Identities = 4/26 (15%), Positives = 4/26 (15%)
Query: 21 CRFRPLNHSEEKAGSKFIVKFPSGGE 46
PL F G
Sbjct: 30 TDIFPLFMDPYNGLMVMRASFAPGLT 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.127 0.348
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,212,006
Number of extensions: 60117
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 31
Length of query: 86
Length of database: 6,701,793
Length adjustment: 54
Effective length of query: 32
Effective length of database: 5,194,059
Effective search space: 166209888
Effective search space used: 166209888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 51 (23.4 bits)