RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5722
         (86 letters)



>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 323

 Score = 45.7 bits (107), Expect = 8e-08
 Identities = 18/31 (58%), Positives = 22/31 (70%)

Query: 13 AEDSIRVVCRFRPLNHSEEKAGSKFIVKFPS 43
          AE +I+V+CRFRPLN SE   G K+I KF  
Sbjct: 3  AECNIKVMCRFRPLNESEVNRGDKYIAKFQG 33


>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
          Length = 354

 Score = 44.2 bits (103), Expect = 3e-07
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 12 AAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPS 43
          ++ +SI+VV RFRP N  E ++G + IV F  
Sbjct: 2  SSANSIKVVARFRPQNRVEIESGGQPIVTFQG 33


>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
          [TaxId: 10090]}
          Length = 349

 Score = 42.7 bits (99), Expect = 8e-07
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSG 44
          S++V  R RP N  E    SK I++    
Sbjct: 2  SVKVAVRVRPFNSREMSRDSKCIIQMSGS 30


>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c
          [TaxId: 10090]}
          Length = 362

 Score = 42.6 bits (99), Expect = 8e-07
 Identities = 12/43 (27%), Positives = 16/43 (37%)

Query: 1  MSNNAPADREIAAEDSIRVVCRFRPLNHSEEKAGSKFIVKFPS 43
          M  +     +   E  I V  R RPLN  E       ++  PS
Sbjct: 16 MECSPLTVTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPS 58


>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),
          mitotic kinesin eg5 [TaxId: 9606]}
          Length = 345

 Score = 40.7 bits (94), Expect = 4e-06
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHT 65
          I+VV R RP N +E KA +  IV+         +S+  G  ++ SS  T
Sbjct: 2  IQVVVRCRPFNLAERKASAHSIVECD--PVRKEVSVRTGGLADKSSRKT 48


>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
          falciparum) [TaxId: 5833]}
          Length = 330

 Score = 40.0 bits (92), Expect = 8e-06
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPSGGE 46
          I+VV R RPL+  E+K     I+   +   
Sbjct: 2  IKVVVRKRPLSELEKKKKDSDIITVKNNCT 31


>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Baker's yeast (Saccharomyces
          cerevisiae), Kar [TaxId: 4932]}
          Length = 342

 Score = 38.1 bits (87), Expect = 3e-05
 Identities = 11/50 (22%), Positives = 19/50 (38%)

Query: 16 SIRVVCRFRPLNHSEEKAGSKFIVKFPSGGEENGLSLGIGTASESSSEHT 65
          +IRV CR RP   + E + +  I            S+ +     ++  H 
Sbjct: 2  NIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHE 51


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
          (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIVKFPS 43
          IRV CR RPL   E  A  +  ++   
Sbjct: 2  IRVYCRLRPLCEKEIIAKERNAIRSVD 28


>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
          disjunctional) {Fruit fly (Drosophila melanogaster)
          [TaxId: 7227]}
          Length = 368

 Score = 35.7 bits (81), Expect = 2e-04
 Identities = 10/23 (43%), Positives = 10/23 (43%)

Query: 17 IRVVCRFRPLNHSEEKAGSKFIV 39
          IRV CR RP   SEE        
Sbjct: 47 IRVFCRIRPPLESEENRMCCTWT 69


>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima
           [TaxId: 2336]}
          Length = 189

 Score = 22.8 bits (47), Expect = 7.4
 Identities = 5/15 (33%), Positives = 9/15 (60%)

Query: 28  HSEEKAGSKFIVKFP 42
            SE+  G+K  ++ P
Sbjct: 173 ESEKDKGTKVTIRLP 187


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.127    0.348 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 283,141
Number of extensions: 10213
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 10
Length of query: 86
Length of database: 2,407,596
Length adjustment: 51
Effective length of query: 35
Effective length of database: 1,707,366
Effective search space: 59757810
Effective search space used: 59757810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.6 bits)