Query psy5723
Match_columns 162
No_of_seqs 220 out of 952
Neff 5.9
Searched_HMMs 46136
Date Sat Aug 17 00:57:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5723.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5723hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0860|consensus 99.9 1.2E-24 2.5E-29 162.2 4.7 81 23-109 22-102 (116)
2 KOG0859|consensus 99.7 5.5E-19 1.2E-23 142.4 1.6 75 28-108 123-197 (217)
3 PF00957 Synaptobrevin: Synapt 99.7 1.2E-18 2.6E-23 123.7 1.9 74 29-108 2-75 (89)
4 KOG0860|consensus 99.6 2.8E-16 6E-21 117.3 5.7 70 88-157 25-94 (116)
5 PF00957 Synaptobrevin: Synapt 99.6 5.3E-15 1.2E-19 105.0 6.7 69 91-159 2-70 (89)
6 KOG0859|consensus 99.5 2.2E-15 4.8E-20 121.6 2.4 70 91-160 124-193 (217)
7 KOG0861|consensus 99.3 1.3E-12 2.8E-17 104.1 2.6 62 24-91 131-192 (198)
8 KOG0861|consensus 99.3 6.4E-12 1.4E-16 100.1 5.6 58 90-147 135-192 (198)
9 COG5143 SNC1 Synaptobrevin/VAM 99.2 1.7E-11 3.7E-16 98.7 5.7 93 31-150 95-187 (190)
10 COG5143 SNC1 Synaptobrevin/VAM 98.8 1.6E-09 3.4E-14 87.4 1.9 68 23-96 122-189 (190)
11 KOG0862|consensus 98.3 7.6E-07 1.7E-11 73.1 4.7 71 25-101 129-199 (216)
12 KOG0862|consensus 97.9 1.3E-05 2.9E-10 65.8 4.6 68 91-160 133-200 (216)
13 KOG1983|consensus 80.8 1 2.2E-05 44.7 2.1 44 111-154 946-990 (993)
14 PRK09793 methyl-accepting prot 63.6 40 0.00087 30.7 8.0 102 34-141 412-513 (533)
15 PRK15048 methyl-accepting chem 63.2 43 0.00093 30.4 8.1 34 39-72 419-452 (553)
16 KOG4057|consensus 62.9 25 0.00054 28.0 5.6 32 131-162 44-75 (180)
17 PF15469 Sec5: Exocyst complex 61.8 74 0.0016 24.7 9.8 87 40-140 2-88 (182)
18 PRK15041 methyl-accepting chem 61.5 47 0.001 30.5 8.1 102 39-146 421-522 (554)
19 PF00015 MCPsignal: Methyl-acc 57.1 18 0.00039 28.0 4.0 19 32-50 102-120 (213)
20 KOG1983|consensus 51.9 3.1 6.7E-05 41.5 -1.3 39 50-94 947-985 (993)
21 PF00015 MCPsignal: Methyl-acc 49.7 12 0.00026 29.0 1.9 9 136-144 193-201 (213)
22 PF04799 Fzo_mitofusin: fzo-li 44.1 58 0.0013 26.1 5.1 43 30-72 109-151 (171)
23 PF08614 ATG16: Autophagy prot 41.6 13 0.00028 29.6 1.0 46 24-69 68-113 (194)
24 COG1340 Uncharacterized archae 40.2 1.9E+02 0.0042 25.2 8.0 65 28-113 136-200 (294)
25 KOG3208|consensus 39.5 2.3E+02 0.005 23.8 10.9 18 145-162 202-219 (231)
26 COG1340 Uncharacterized archae 39.3 47 0.001 28.9 4.1 58 89-146 169-226 (294)
27 KOG1510|consensus 38.0 1.9E+02 0.0042 22.5 7.8 28 29-57 2-29 (139)
28 KOG2391|consensus 35.3 1E+02 0.0022 27.5 5.6 32 41-72 214-246 (365)
29 PF04048 Sec8_exocyst: Sec8 ex 34.9 98 0.0021 23.4 4.9 33 92-125 110-142 (142)
30 KOG2196|consensus 34.9 2.9E+02 0.0063 23.6 8.7 92 28-141 111-210 (254)
31 KOG0994|consensus 33.9 1.8E+02 0.0039 30.5 7.5 91 30-130 1511-1608(1758)
32 PF09753 Use1: Membrane fusion 33.2 30 0.00065 28.6 2.0 71 47-125 151-221 (251)
33 COG0840 Tar Methyl-accepting c 32.5 2.6E+02 0.0056 23.8 7.7 22 31-52 297-318 (408)
34 KOG0994|consensus 30.6 2.4E+02 0.0053 29.6 7.8 106 32-137 1593-1706(1758)
35 PF00261 Tropomyosin: Tropomyo 29.8 2.5E+02 0.0054 22.9 6.9 38 28-65 90-127 (237)
36 PHA03332 membrane glycoprotein 29.5 2E+02 0.0043 29.7 7.0 88 43-145 876-963 (1328)
37 PF07464 ApoLp-III: Apolipopho 29.2 69 0.0015 25.1 3.3 12 42-53 28-39 (155)
38 PF04799 Fzo_mitofusin: fzo-li 25.6 3.4E+02 0.0073 21.8 6.6 53 89-141 106-158 (171)
39 PF10158 LOH1CR12: Tumour supp 23.8 1.6E+02 0.0034 22.5 4.3 31 94-125 96-126 (131)
40 KOG3691|consensus 23.2 3.8E+02 0.0083 27.0 7.6 42 92-134 120-161 (982)
41 PHA03386 P10 fibrous body prot 22.8 1.1E+02 0.0025 22.2 3.1 36 29-68 18-53 (94)
42 PF10280 Med11: Mediator compl 22.5 2.5E+02 0.0055 20.6 5.1 34 128-161 42-75 (117)
43 PF05531 NPV_P10: Nucleopolyhe 22.2 1.1E+02 0.0023 21.4 2.8 15 30-44 18-32 (75)
44 PTZ00446 vacuolar sorting prot 21.7 4.4E+02 0.0096 21.4 8.5 13 29-41 26-38 (191)
45 smart00283 MA Methyl-accepting 21.1 4E+02 0.0087 20.7 7.3 15 129-143 237-251 (262)
46 PRK15048 methyl-accepting chem 21.0 4.7E+02 0.01 23.7 7.5 9 8-16 387-395 (553)
47 KOG3094|consensus 20.9 3.5E+02 0.0076 23.4 6.2 52 2-55 31-82 (284)
48 PF10186 Atg14: UV radiation r 20.9 4.6E+02 0.01 21.3 8.3 13 43-55 36-48 (302)
49 COG1463 Ttg2C ABC-type transpo 20.1 3.6E+02 0.0079 23.4 6.4 62 83-144 202-263 (359)
50 PF05739 SNARE: SNARE domain; 20.1 2.4E+02 0.0051 17.6 5.6 43 29-71 3-45 (63)
No 1
>KOG0860|consensus
Probab=99.90 E-value=1.2e-24 Score=162.15 Aligned_cols=81 Identities=48% Similarity=0.609 Sum_probs=77.3
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD 102 (162)
Q Consensus 23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~ 102 (162)
|++...+++++++++|||||++||++||+|+||||+||++|++||+.|++ +|.+|+++|.+++++|||++.++.
T Consensus 22 ~~~~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~------~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 22 PPNNTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQA------GASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHH
Q psy5723 103 EVVGIMR 109 (162)
Q Consensus 103 iVi~IM~ 109 (162)
.+++++.
T Consensus 96 ~il~~v~ 102 (116)
T KOG0860|consen 96 IILGLVI 102 (116)
T ss_pred HHHHHHH
Confidence 8877653
No 2
>KOG0859|consensus
Probab=99.73 E-value=5.5e-19 Score=142.42 Aligned_cols=75 Identities=29% Similarity=0.330 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI 107 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I 107 (162)
+.+++++++.||+||++||.+|||++|+||||||.|+|||++|+. ++..|++++++++++|||.+.++..+...
T Consensus 123 ~id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~------~s~~fr~q~r~~~r~mw~~n~kl~~iv~~ 196 (217)
T KOG0859|consen 123 EISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRS------KSFDFRTQGRKLRRKMWFQNMKLKLIVLG 196 (217)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhh------hhHHHHHHHHHHHHHHHHhccceehhhhh
Confidence 389999999999999999999999999999999999999999999 99999999999999999999999887654
Q ss_pred H
Q psy5723 108 M 108 (162)
Q Consensus 108 M 108 (162)
.
T Consensus 197 ~ 197 (217)
T KOG0859|consen 197 V 197 (217)
T ss_pred H
Confidence 4
No 3
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.72 E-value=1.2e-18 Score=123.74 Aligned_cols=74 Identities=31% Similarity=0.473 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHH
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIM 108 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM 108 (162)
++++.+++.+|++|+++|.+||+++++|||+|++|+++|++|.. .|..|+++|+++++++||.+.++..+..+.
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~------~a~~F~k~a~~l~r~~~~~~~k~~~i~~~i 75 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSD------NAKQFKKNAKKLKRKMWWRNYKLYIIIIII 75 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 58999999999999999999999999999999999999999999 999999999999999999999999987754
No 4
>KOG0860|consensus
Probab=99.64 E-value=2.8e-16 Score=117.32 Aligned_cols=70 Identities=51% Similarity=0.638 Sum_probs=64.6
Q ss_pred CCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723 88 SDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL 157 (162)
Q Consensus 88 ~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~ 157 (162)
....+++...+.++++|++||.+||+|||||||||++|++||+.|+.+|..|+++|.+++..|+-+-.|.
T Consensus 25 ~~~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km 94 (116)
T KOG0860|consen 25 NTANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKM 94 (116)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447899999999999999999999999999999999999999999999999999999999998765554
No 5
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=99.57 E-value=5.3e-15 Score=104.98 Aligned_cols=69 Identities=36% Similarity=0.478 Sum_probs=64.5
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhc
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSA 159 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~ 159 (162)
.+++...+.++++++.+|.+||+++++|||+|++|+++|+.|...|..|+++|+++++.|+.+..++..
T Consensus 2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~~~~k~~~ 70 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWWRNYKLYI 70 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999977766654
No 6
>KOG0859|consensus
Probab=99.54 E-value=2.2e-15 Score=121.62 Aligned_cols=70 Identities=31% Similarity=0.353 Sum_probs=65.9
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcc
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAV 160 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~ 160 (162)
-+++.+.+.++.+|++||++|||+||+||||||.|||||++|+.+|..|+++++++...|.-+-.+|.-+
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~i 193 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLI 193 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehh
Confidence 6889999999999999999999999999999999999999999999999999999999998887776543
No 7
>KOG0861|consensus
Probab=99.29 E-value=1.3e-12 Score=104.06 Aligned_cols=62 Identities=27% Similarity=0.341 Sum_probs=59.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCch
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPK 91 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk 91 (162)
++|+..|+|.++|++|||++.||++.|+.||+||||||+|++||++|.. +|+.|.++|++.+
T Consensus 131 qdP~ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~------qSKmfYKsAKK~N 192 (198)
T KOG0861|consen 131 QDPAEADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSL------QSKMFYKSAKKTN 192 (198)
T ss_pred cChhhhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhH------HHHHHHHHHhhcC
Confidence 5899999999999999999999999999999999999999999999999 8999999987765
No 8
>KOG0861|consensus
Probab=99.27 E-value=6.4e-12 Score=100.11 Aligned_cols=58 Identities=26% Similarity=0.348 Sum_probs=55.4
Q ss_pred chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy5723 90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHG 147 (162)
Q Consensus 90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~ 147 (162)
-.+.|..++.++++++.|+++.|+.||+|||+||+||+||+.|..+|+.|+++||+-|
T Consensus 135 ead~l~kvQ~EldETKiiLhkTiesVL~RgEKLDdLV~KSe~Ls~qSKmfYKsAKK~N 192 (198)
T KOG0861|consen 135 EADPLLKVQNELDETKIILHKTIESVLERGEKLDDLVSKSENLSLQSKMFYKSAKKTN 192 (198)
T ss_pred hhChHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHhhhHHHHHHHHHHhhcC
Confidence 3688999999999999999999999999999999999999999999999999999865
No 9
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=99.22 E-value=1.7e-11 Score=98.69 Aligned_cols=93 Identities=27% Similarity=0.412 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHH
Q psy5723 31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRV 110 (162)
Q Consensus 31 kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~ 110 (162)
+...++...|+++.+|..|+++++++|.+.. ..++++...+..+.+++.+|.+
T Consensus 95 ~s~~~~~~~d~~~~~~~~~~d~~~e~~y~d~---------------------------s~~D~~d~l~~el~e~K~~l~k 147 (190)
T COG5143 95 KSSALEQLIDDTVGIMRVNIDKVIEKGYRDP---------------------------SIQDKLDQLQQELEETKRVLNK 147 (190)
T ss_pred hhhhHhhcccCccchhhhhHHHHHHhhcCCc---------------------------hhhhHHHHHHHHHHHHHHHHHH
Confidence 5677888999999999999999999963332 2346677778889999999999
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q psy5723 111 NVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSM 150 (162)
Q Consensus 111 NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m 150 (162)
||+++|+|||+|+.|+++|+.|...|+.|++.|++.++-|
T Consensus 148 ~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~~~ 187 (190)
T COG5143 148 NIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNLCC 187 (190)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999977654
No 10
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=98.81 E-value=1.6e-09 Score=87.41 Aligned_cols=68 Identities=25% Similarity=0.229 Sum_probs=63.3
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhh
Q psy5723 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSE 96 (162)
Q Consensus 23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~ 96 (162)
-+.+...|++.+++.+++||+.+|.+||+++|+|||+|+.|.+++..|.. .+..|.+.|++.+..+||
T Consensus 122 y~d~s~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~------~s~~~~k~akk~n~~~~~ 189 (190)
T COG5143 122 YRDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLL------SSKMFPKSAKKSNLCCLI 189 (190)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHhhhhhee
Confidence 34577889999999999999999999999999999999999999999999 999999999999888877
No 11
>KOG0862|consensus
Probab=98.31 E-value=7.6e-07 Score=73.10 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=64.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhh
Q psy5723 25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQV 101 (162)
Q Consensus 25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL 101 (162)
.+++.+.+.++.+++.+|+.||.+||+.++.||+.|+.|...+.+|.. .|..+.+.|..++.+..+.+.-.
T Consensus 129 d~r~~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~------~s~~y~~~a~~in~~sl~~~~aa 199 (216)
T KOG0862|consen 129 DTRSQRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSS------ESRKYPKTAKGINRKSLIRKYAA 199 (216)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccH------HHHhhHHHHHHHHHHHHHHHHHH
Confidence 466789999999999999999999999999999999999999999999 88889999999998876665543
No 12
>KOG0862|consensus
Probab=97.91 E-value=1.3e-05 Score=65.83 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=59.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhcc
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSAV 160 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~ 160 (162)
++.+...+..+..++.||++||++||.|||.|+.|...+..|...|..+++.|+. ++|..-+.+.+|.
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~--in~~sl~~~~aa~ 200 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELSSESRKYPKTAKG--INRKSLIRKYAAY 200 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhcccHHHHhhHHHHHH--HHHHHHHHHHHHH
Confidence 4668888999999999999999999999999999999999999999999999988 4455555555443
No 13
>KOG1983|consensus
Probab=80.80 E-value=1 Score=44.73 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=36.0
Q ss_pred hHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhh-hcchhhhhh
Q psy5723 111 NVEKVLERDQKLSELDNRANALQQGASQFEHVPTF-HGLSMSRQI 154 (162)
Q Consensus 111 NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~-~~~~m~~~~ 154 (162)
--..+.+|||||+.++++|.+|.+.+.+|-..|.+ +++.+.|.|
T Consensus 946 a~~~l~e~~erL~~~e~~t~~~~~sa~~~s~~a~e~~~~~~~kk~ 990 (993)
T KOG1983|consen 946 ALQPLNERGERLSRLEERTAEMANSAKQFSSTAHELTGKYKVKKW 990 (993)
T ss_pred cchhhHhhccccchHHHHHHHhhccHHHHHHHHHHHHhhhhhhhh
Confidence 34678899999999999999999999999988864 455555554
No 14
>PRK09793 methyl-accepting protein IV; Provisional
Probab=63.60 E-value=40 Score=30.66 Aligned_cols=102 Identities=12% Similarity=0.174 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHH
Q psy5723 34 QTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVE 113 (162)
Q Consensus 34 ~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~ 113 (162)
++..-++++..-+.+..+.+-+-++.++++.+..+.... ........+......+..+...+..+..+..+|-.
T Consensus 412 ~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~~ 485 (533)
T PRK09793 412 EIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVND------IMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNAS 485 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444443 22222222333344445555555556666666555
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy5723 114 KVLERDQKLSELDNRANALQQGASQFEH 141 (162)
Q Consensus 114 kvL~RgekLe~L~~kt~~L~~~s~~F~k 141 (162)
.+=+--...+.|...++.|......|+-
T Consensus 486 ~~~~~~~~~~~l~~~a~~l~~~v~~F~~ 513 (533)
T PRK09793 486 LVEEAAVATEQLANQADHLSSRVAVFTL 513 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5444445556666677777777666654
No 15
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=63.15 E-value=43 Score=30.40 Aligned_cols=34 Identities=9% Similarity=0.176 Sum_probs=13.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccC
Q psy5723 39 VDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGK 72 (162)
Q Consensus 39 v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~ 72 (162)
++++...+.+..+.+-+-++.++.+.+..+....
T Consensus 419 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 452 (553)
T PRK15048 419 IEDSVSRVDTGSVLVESAGETMNNIVNAVTRVTD 452 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444433
No 16
>KOG4057|consensus
Probab=62.95 E-value=25 Score=27.97 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHhhhhhhhhcchhhhhhhhhhcccC
Q psy5723 131 ALQQGASQFEHVPTFHGLSMSRQINHLSAVIT 162 (162)
Q Consensus 131 ~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~~~ 162 (162)
+|.++|..|.+.-..+--.+.-|+.||+-|.|
T Consensus 44 n~e~qa~~F~ksit~VE~eLSaQi~YLtqV~t 75 (180)
T KOG4057|consen 44 NMEDQANNFKKSITQVENELSAQIQYLTQVCT 75 (180)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47799999999888999999999999998865
No 17
>PF15469 Sec5: Exocyst complex component Sec5
Probab=61.76 E-value=74 Score=24.69 Aligned_cols=87 Identities=17% Similarity=0.288 Sum_probs=63.2
Q ss_pred HHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhh
Q psy5723 40 DEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERD 119 (162)
Q Consensus 40 ~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~Rg 119 (162)
++.+..+.+|.++.+..-+.|+.+...-..... .+... .-+..+...+..+......-+.-|++|.
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~------~~~~~--------~~~~~L~~~l~~~~~~~~~~~~pll~~~ 67 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKT------EAQQD--------SGTEKLEESLNEASSKANSVFKPLLERR 67 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhh------ccccc--------ccHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 356788999999999999999999988765555 22111 3345556666777777777778888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhh
Q psy5723 120 QKLSELDNRANALQQGASQFE 140 (162)
Q Consensus 120 ekLe~L~~kt~~L~~~s~~F~ 140 (162)
++.+.+..--.-|.....-|.
T Consensus 68 ~k~~~l~~~l~~l~r~~flF~ 88 (182)
T PF15469_consen 68 EKADKLRNALEFLQRNRFLFN 88 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888877777766655554
No 18
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=61.49 E-value=47 Score=30.48 Aligned_cols=102 Identities=12% Similarity=0.136 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhh
Q psy5723 39 VDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLER 118 (162)
Q Consensus 39 v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~R 118 (162)
++++..-+.+..+.+-+-++.++.+.+..++... ........+......+..+...+..+..+..+|-..+=+-
T Consensus 421 i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~~~~~~~~~ 494 (554)
T PRK15041 421 IEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTD------IMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEES 494 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443 2222222333344455555666666666666666655555
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5723 119 DQKLSELDNRANALQQGASQFEHVPTFH 146 (162)
Q Consensus 119 gekLe~L~~kt~~L~~~s~~F~k~a~~~ 146 (162)
-.-.+.|.+.++.|......|+-..-++
T Consensus 495 ~~~~~~l~~~a~~L~~~v~~Fk~~~~~~ 522 (554)
T PRK15041 495 AAAAAALEEQASRLTEAVAVFRIQQQQQ 522 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 5566778888888888888887655443
No 19
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=57.09 E-value=18 Score=27.97 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhH
Q psy5723 32 LQQTQAQVDEVVDIMKTNV 50 (162)
Q Consensus 32 l~~l~~~v~eV~~IM~~Ni 50 (162)
+..++..++.+...|.+..
T Consensus 102 i~~i~~~~~~~~~~~~~~~ 120 (213)
T PF00015_consen 102 IEEIQEQISQVVESMEESR 120 (213)
T ss_dssp HHHHHHHHHCCHHHHHHHH
T ss_pred Hhhhhhhhhhhhhhhhcch
Confidence 3334444333343344333
No 20
>KOG1983|consensus
Probab=51.94 E-value=3.1 Score=41.47 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhh
Q psy5723 50 VEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKL 94 (162)
Q Consensus 50 i~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km 94 (162)
-+.+++|+|||+.++++|+++.+ .+.+|...|.++.-++
T Consensus 947 ~~~l~e~~erL~~~e~~t~~~~~------sa~~~s~~a~e~~~~~ 985 (993)
T KOG1983|consen 947 LQPLNERGERLSRLEERTAEMAN------SAKQFSSTAHELTGKY 985 (993)
T ss_pred chhhHhhccccchHHHHHHHhhc------cHHHHHHHHHHHHhhh
Confidence 45688999999999999999999 8888888776665443
No 21
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=49.67 E-value=12 Score=28.96 Aligned_cols=9 Identities=11% Similarity=0.228 Sum_probs=3.2
Q ss_pred HHHhhhhhh
Q psy5723 136 ASQFEHVPT 144 (162)
Q Consensus 136 s~~F~k~a~ 144 (162)
+......+.
T Consensus 193 ~~~l~~~a~ 201 (213)
T PF00015_consen 193 AEELSESAE 201 (213)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 333333333
No 22
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.09 E-value=58 Score=26.13 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccC
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGK 72 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~ 72 (162)
.-..++..+||+++.-|.+-|+.+-..-++||.+..++..|..
T Consensus 109 ~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 109 STFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999999998888888888877765544
No 23
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=41.59 E-value=13 Score=29.62 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=0.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhcc
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGN 69 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~ 69 (162)
+.+....++.+++.++.++...=-++.+.++.-...|..+......
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~ 113 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSE 113 (194)
T ss_dssp ----------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccchhhhhHHH
Confidence 3445567888899999988876666776666666666665554443
No 24
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=40.21 E-value=1.9e+02 Score=25.16 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI 107 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I 107 (162)
-..+|..+..++.+.+.++..| +++..|...+..+.. .+. .++.++...-.+...+...
T Consensus 136 lvq~I~~L~k~le~~~k~~e~~--------~~~~el~aei~~lk~------~~~-------e~~eki~~la~eaqe~he~ 194 (294)
T COG1340 136 LVQKIKELRKELEDAKKALEEN--------EKLKELKAEIDELKK------KAR-------EIHEKIQELANEAQEYHEE 194 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH------HHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666544444 445555555554444 333 3333444444444555555
Q ss_pred HHHhHH
Q psy5723 108 MRVNVE 113 (162)
Q Consensus 108 M~~NI~ 113 (162)
|..+..
T Consensus 195 m~k~~~ 200 (294)
T COG1340 195 MIKLFE 200 (294)
T ss_pred HHHHHH
Confidence 544443
No 25
>KOG3208|consensus
Probab=39.49 E-value=2.3e+02 Score=23.82 Aligned_cols=18 Identities=28% Similarity=0.182 Sum_probs=11.1
Q ss_pred hhcchhhhhhhhhhcccC
Q psy5723 145 FHGLSMSRQINHLSAVIT 162 (162)
Q Consensus 145 ~~~~~m~~~~~~~~~~~~ 162 (162)
+.|..-+|-..-|+|||+
T Consensus 202 kIk~kkrrdslILa~Vis 219 (231)
T KOG3208|consen 202 KIKIKKRRDSLILAAVIS 219 (231)
T ss_pred HHHHHhhhhhHHHHHHHH
Confidence 334445556677888874
No 26
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=39.25 E-value=47 Score=28.90 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=30.4
Q ss_pred CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy5723 89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFH 146 (162)
Q Consensus 89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~ 146 (162)
.++.+..-.+.++..+..=..+-=+.|+.-=+.+|.+-.+++.|......+...+..+
T Consensus 169 ~lk~~~~e~~eki~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~ 226 (294)
T COG1340 169 ELKKKAREIHEKIQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDEL 226 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444455555555555444444444555555555666666666655555555555443
No 27
>KOG1510|consensus
Probab=37.99 E-value=1.9e+02 Score=22.46 Aligned_cols=28 Identities=29% Similarity=0.435 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERD 57 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRg 57 (162)
.|++.++|..|+++...|-+-|. +|++.
T Consensus 2 aDRlTQLQd~vn~~A~qf~naig-~Lq~~ 29 (139)
T KOG1510|consen 2 ADRLTQLQDTVNEMAEQFCNAIG-VLQQT 29 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH-HHHhc
Confidence 37899999999999999999998 55554
No 28
>KOG2391|consensus
Probab=35.25 E-value=1e+02 Score=27.52 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=16.1
Q ss_pred HHHHHHHHhHHHHHHhhhh-hHHHHHHhccccC
Q psy5723 41 EVVDIMKTNVEKVLERDQK-LSELDDRAGNLGK 72 (162)
Q Consensus 41 eV~~IM~~Ni~kvleRgek-L~~L~~ks~~L~~ 72 (162)
-|.+-|+.-.++.++|-.. ++.|..+.++|..
T Consensus 214 a~~eklR~r~eeeme~~~aeq~slkRt~EeL~~ 246 (365)
T KOG2391|consen 214 AVREKLRRRREEEMERLQAEQESLKRTEEELNI 246 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 3444555555555555433 2344445555555
No 29
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=34.94 E-value=98 Score=23.42 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=23.2
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHH
Q psy5723 92 SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125 (162)
Q Consensus 92 ~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L 125 (162)
..+|....+...++.++ +.|+.+..--++||.|
T Consensus 110 ~~L~~~s~~~~~mi~iL-~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 110 KELWQRSQEYKEMIEIL-DQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHhcC
Confidence 45788888888888876 5677777666666643
No 30
>KOG2196|consensus
Probab=34.88 E-value=2.9e+02 Score=23.58 Aligned_cols=92 Identities=17% Similarity=0.202 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHhHHHHHHhhhhhHHHHH----HhccccCCCCCCCCCCcccccCCCchhhhhhhhhh
Q psy5723 28 AQKRLQQTQAQVDEV---VDIMKTNVEKVLERDQKLSELDD----RAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQ 100 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV---~~IM~~Ni~kvleRgekL~~L~~----ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~K 100 (162)
...+|..+..++++| ...+.++++-|+....-|+.+.+ +.+.+.. ..+ ..+..
T Consensus 111 ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g--------~~~------------~~~~D 170 (254)
T KOG2196|consen 111 NGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSG--------HTY------------LSRAD 170 (254)
T ss_pred CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------chh------------hhhhh
Confidence 346788888888888 46777888888877766666554 3332222 111 11112
Q ss_pred hhHH-HHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy5723 101 VDEV-VGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEH 141 (162)
Q Consensus 101 L~iV-i~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k 141 (162)
+..+ ..-|.+|||.=|.|= =++|-+-.+.|++.++.|-+
T Consensus 171 ~eR~qty~~a~nidsqLk~l--~~dL~~ii~~lN~~~~~~d~ 210 (254)
T KOG2196|consen 171 VEREQTYKMAENIDSQLKRL--SEDLKQIIKSLNTMSKTVDK 210 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHhccCcccc
Confidence 2222 336788999888885 35777778888888888866
No 31
>KOG0994|consensus
Probab=33.85 E-value=1.8e+02 Score=30.52 Aligned_cols=91 Identities=20% Similarity=0.242 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhh-------hh
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQ-------VD 102 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~K-------L~ 102 (162)
+.|+.+-.+|.+...- ..||+.||.|-.- =..++++|.. .|..-++.|..++.++..+... ..
T Consensus 1511 eqi~~L~~~I~e~v~s-L~nVd~IL~~T~~---di~ra~~L~s------~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~ 1580 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVAS-LPNVDAILSRTKG---DIARAENLQS------EAERARSRAEDVKGQAEDVVEALEEADVAQG 1580 (1758)
T ss_pred HHHHHHHHHHHHHHHh-cccHHHHHHhhhh---hHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444443332 2488888877311 1234444444 4444444444444444333332 23
Q ss_pred HHHHHHHHhHHHHHhhhhhHHHHHHHHH
Q psy5723 103 EVVGIMRVNVEKVLERDQKLSELDNRAN 130 (162)
Q Consensus 103 iVi~IM~~NI~kvL~RgekLe~L~~kt~ 130 (162)
++...|..--..+-.-++.|+.+.+.|.
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~ 1608 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETA 1608 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444555555554443
No 32
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=33.18 E-value=30 Score=28.62 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=35.3
Q ss_pred HHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHH
Q psy5723 47 KTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125 (162)
Q Consensus 47 ~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L 125 (162)
..+++++|++.+.+ -++-+++|.. -+.+.+.++......+..=+.-++.....+..|+..+-.-+.||...
T Consensus 151 ~~~~e~~l~~~~~~--QE~L~~em~~------La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 151 QASLEKILQHHRNL--QEDLTEEMLS------LARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred cccHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777666655 2334444444 33223333333334444444455556666666666555555444443
No 33
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=32.53 E-value=2.6e+02 Score=23.78 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHH
Q psy5723 31 RLQQTQAQVDEVVDIMKTNVEK 52 (162)
Q Consensus 31 kl~~l~~~v~eV~~IM~~Ni~k 52 (162)
-+..++.++.++...|....+.
T Consensus 297 ~i~~iq~~~~~~~~~~~~~~~~ 318 (408)
T COG0840 297 LIEEIQNEAADAVEHMEESASE 318 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555444443
No 34
>KOG0994|consensus
Probab=30.63 E-value=2.4e+02 Score=29.61 Aligned_cols=106 Identities=18% Similarity=0.179 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccC-CCCCCCCCCcccccCCCchh-------hhhhhhhhhhH
Q psy5723 32 LQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGK-MDGGFAGNSSGRQQKSDPKS-------KLSESQKQVDE 103 (162)
Q Consensus 32 l~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~-~~~~fa~s~~F~~~a~rLk~-------Km~~~n~KL~i 103 (162)
+..+++.|+.|.+.|.---..+-.-+++|.+|..+.+.|.. -++-.+.|+.-.+.+.-.+. .+..++..+..
T Consensus 1593 ~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1593 IRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555544444333344445555555555555543 00000033333333222222 22223333333
Q ss_pred HHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHH
Q psy5723 104 VVGIMRVNVEKVLERDQKLSELDNRANALQQGAS 137 (162)
Q Consensus 104 Vi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~ 137 (162)
+..++..-.+....-.+|.+.|.+.++.|-.++.
T Consensus 1673 ~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~ 1706 (1758)
T KOG0994|consen 1673 VDRLLEKRMEGSQAARERAEQLRTEAEKLLGQAN 1706 (1758)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444445556666666655555444
No 35
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.81 E-value=2.5e+02 Score=22.93 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHH
Q psy5723 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDD 65 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ 65 (162)
...++..+..++.+++.+..+.-.+.-+-.-+|..+..
T Consensus 90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~ 127 (237)
T PF00261_consen 90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQ 127 (237)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666655555554444444444443
No 36
>PHA03332 membrane glycoprotein; Provisional
Probab=29.53 E-value=2e+02 Score=29.70 Aligned_cols=88 Identities=15% Similarity=0.246 Sum_probs=44.4
Q ss_pred HHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhH
Q psy5723 43 VDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKL 122 (162)
Q Consensus 43 ~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekL 122 (162)
.++-..+++.+++..+.+..|.++-..++. .-..+.+.+...-..+..+..-|.+||+.+=-|-..|
T Consensus 876 L~va~~~~~~llqnaaaia~mksaIg~tNa-------------AV~~lsDai~klGnti~kisatl~~nI~avNgRIs~L 942 (1328)
T PHA03332 876 LAVATLYVNQLLQATAATAEMASKIGGLNA-------------RVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDL 942 (1328)
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHH
Confidence 344445555555555555555544444433 1122334455555666666677777777665555444
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhh
Q psy5723 123 SELDNRANALQQGASQFEHVPTF 145 (162)
Q Consensus 123 e~L~~kt~~L~~~s~~F~k~a~~ 145 (162)
++-++ .++...+..|.+=|.+
T Consensus 943 ed~VN--~r~~~v~~~intLA~q 963 (1328)
T PHA03332 943 EDQVN--LRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHH--HHHHHHHHHHHHHHHH
Confidence 44333 2344444445554444
No 37
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=29.19 E-value=69 Score=25.14 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=4.6
Q ss_pred HHHHHHHhHHHH
Q psy5723 42 VVDIMKTNVEKV 53 (162)
Q Consensus 42 V~~IM~~Ni~kv 53 (162)
|...|.+|-+.+
T Consensus 28 v~~aik~~sd~~ 39 (155)
T PF07464_consen 28 VVKAIKEQSDSV 39 (155)
T ss_dssp SSHHHHHHHHHH
T ss_pred HHHHHHHhHHHH
Confidence 333333443333
No 38
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=25.58 E-value=3.4e+02 Score=21.80 Aligned_cols=53 Identities=19% Similarity=0.314 Sum_probs=40.7
Q ss_pred CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhh
Q psy5723 89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEH 141 (162)
Q Consensus 89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k 141 (162)
.+..-.......++.+..=|.+-|+++-..-++||.+..++..|.+.+.-+..
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677888888999999999999999999999998888887776544
No 39
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=23.77 E-value=1.6e+02 Score=22.45 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=14.6
Q ss_pred hhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHH
Q psy5723 94 LSESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125 (162)
Q Consensus 94 m~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L 125 (162)
+...+.-+..+...| +-++.+|--.+||+-|
T Consensus 96 L~~~~~lL~~~v~~i-e~LN~~LP~~~RLep~ 126 (131)
T PF10158_consen 96 LSRCQSLLNQTVPSI-ETLNEILPEEERLEPF 126 (131)
T ss_pred HHHHHHHHHHHHHHH-HHHHhhCChhhcCCCC
Confidence 444444444444333 4455555555555543
No 40
>KOG3691|consensus
Probab=23.16 E-value=3.8e+02 Score=27.04 Aligned_cols=42 Identities=24% Similarity=0.336 Sum_probs=36.1
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHH
Q psy5723 92 SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQ 134 (162)
Q Consensus 92 ~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~ 134 (162)
+++|..+.+..-|+.+| .+|+.+.+-=++|+.++.|=..++.
T Consensus 120 qklw~~~~q~K~Vi~vL-~eieEl~qvPqkie~~i~keqY~~A 161 (982)
T KOG3691|consen 120 QKLWAENSQYKKVIEVL-KEIEELRQVPQKIETLIAKEQYLQA 161 (982)
T ss_pred HHHHHhhhhHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 56999999999999988 5799999999999999988666653
No 41
>PHA03386 P10 fibrous body protein; Provisional
Probab=22.78 E-value=1.1e+02 Score=22.19 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhc
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAG 68 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~ 68 (162)
.+|+..+|.+|++|.. |.+++=.--+.|+.|..+-.
T Consensus 18 d~KVdaLQ~qV~dv~~----n~~~LDa~~~qL~~l~tkV~ 53 (94)
T PHA03386 18 DTKVDALQTQLNGLEE----DSQPLDGLPAQLTELDTKVS 53 (94)
T ss_pred hhHHHHHHHHHHHHHh----cchhhhhHHHHHHHHHHHHH
Confidence 4678888888888874 44433333344555554444
No 42
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=22.47 E-value=2.5e+02 Score=20.56 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcchhhhhhhhhhccc
Q psy5723 128 RANALQQGASQFEHVPTFHGLSMSRQINHLSAVI 161 (162)
Q Consensus 128 kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~~~ 161 (162)
..+.....+..|++.=...-..|++++.+|.-|+
T Consensus 42 ~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e~~ 75 (117)
T PF10280_consen 42 SKEAFESATSEFFSTLSSVEVELRRQIKYLEEVS 75 (117)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677888899999888889999999999998765
No 43
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=22.17 E-value=1.1e+02 Score=21.41 Aligned_cols=15 Identities=27% Similarity=0.481 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy5723 30 KRLQQTQAQVDEVVD 44 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~ 44 (162)
+|+..++.+|++++.
T Consensus 18 ~KVdaLq~~V~~l~~ 32 (75)
T PF05531_consen 18 DKVDALQTQVDDLES 32 (75)
T ss_pred HHHHHHHHHHHHHHh
Confidence 445555555554443
No 44
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=21.67 E-value=4.4e+02 Score=21.36 Aligned_cols=13 Identities=15% Similarity=0.340 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy5723 29 QKRLQQTQAQVDE 41 (162)
Q Consensus 29 ~~kl~~l~~~v~e 41 (162)
.+-|.+++.+++-
T Consensus 26 ~~AIl~Lk~~~~~ 38 (191)
T PTZ00446 26 YKAILKNREAIDA 38 (191)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 45
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=21.08 E-value=4e+02 Score=20.66 Aligned_cols=15 Identities=7% Similarity=0.279 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhhhh
Q psy5723 129 ANALQQGASQFEHVP 143 (162)
Q Consensus 129 t~~L~~~s~~F~k~a 143 (162)
++.+...+..+...+
T Consensus 237 ~~~~~~~~~~l~~~~ 251 (262)
T smart00283 237 SEEISAAAEELSGLA 251 (262)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 46
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=20.97 E-value=4.7e+02 Score=23.68 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=4.1
Q ss_pred CCCCCCCCC
Q psy5723 8 PGGAGDDGI 16 (162)
Q Consensus 8 ~~~~~~~~~ 16 (162)
-||.|-||=
T Consensus 387 AGE~GrGFA 395 (553)
T PRK15048 387 AGEQGRGFA 395 (553)
T ss_pred cccCCCCCh
Confidence 344444543
No 47
>KOG3094|consensus
Probab=20.95 E-value=3.5e+02 Score=23.41 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=28.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q psy5723 2 GDAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLE 55 (162)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvle 55 (162)
|..|.|-.|.+-.+++++|+... -++--++-=++-++.-++.+.+|+.+.+.
T Consensus 31 Gp~g~~~~G~g~~~~~~~l~g~~--~a~~~~~~Gk~~~~~~~E~v~~~~~k~~~ 82 (284)
T KOG3094|consen 31 GPFGNPVTGAGAGFPVQGLGGSP--MADMAMAYGKKIAGQGKEYVEKNLGKYVS 82 (284)
T ss_pred CCCCCCCCCCCcCcccCCCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33444555555566666665433 12222333355566777777888776543
No 48
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.87 E-value=4.6e+02 Score=21.26 Aligned_cols=13 Identities=23% Similarity=0.565 Sum_probs=7.6
Q ss_pred HHHHHHhHHHHHH
Q psy5723 43 VDIMKTNVEKVLE 55 (162)
Q Consensus 43 ~~IM~~Ni~kvle 55 (162)
.+.+...|+.+|+
T Consensus 36 ~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 36 NEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4455556666666
No 49
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.15 E-value=3.6e+02 Score=23.41 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=45.3
Q ss_pred ccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q psy5723 83 GRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPT 144 (162)
Q Consensus 83 F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~ 144 (162)
+.+++.++-+.+.....+++.+..-....+..+..+.+.|..+......+......|-...+
T Consensus 202 ~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r 263 (359)
T COG1463 202 LIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENR 263 (359)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44445555555666666777777777777888888889999888888888888887766554
No 50
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=20.14 E-value=2.4e+02 Score=17.62 Aligned_cols=43 Identities=16% Similarity=0.356 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhcccc
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLG 71 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~ 71 (162)
.+.|..|...|.+++.++.+==..|-+-++-|+.+++..+...
T Consensus 3 d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 45 (63)
T PF05739_consen 3 DEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRAN 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHH
Confidence 3568888889999998877766667777888888888776443
Done!