Query psy5723
Match_columns 162
No_of_seqs 220 out of 952
Neff 5.9
Searched_HMMs 29240
Date Sat Aug 17 00:57:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5723.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5723hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kog_A Vesicle-associated memb 99.9 1.1E-23 3.8E-28 157.4 0.2 83 20-108 23-105 (119)
2 1l4a_A Synaptobrevin; snare, s 99.9 5.4E-23 1.9E-27 143.8 3.1 72 24-101 9-80 (80)
3 1sfc_A VAMP 2, protein (synapt 99.8 6.6E-23 2.3E-27 148.0 0.3 74 23-102 23-96 (96)
4 3hd7_A Vesicle-associated memb 99.8 3E-22 1E-26 143.1 2.0 76 28-109 3-78 (91)
5 2nps_A VAMP-4, vesicle-associa 99.8 6.6E-22 2.3E-26 136.3 -2.7 72 25-102 3-74 (74)
6 3b5n_A Synaptobrevin homolog 1 99.7 1.2E-19 4.2E-24 120.6 0.7 60 30-95 2-61 (61)
7 1n7s_A Vesicle-associated memb 99.7 1.1E-19 3.6E-24 121.6 0.2 62 28-95 2-63 (63)
8 3b5n_A Synaptobrevin homolog 1 99.7 5.4E-18 1.9E-22 112.7 6.6 60 92-151 2-61 (61)
9 1n7s_A Vesicle-associated memb 99.7 8.8E-18 3E-22 112.2 6.6 61 91-151 3-63 (63)
10 1gl2_A Endobrevin; membrane pr 99.7 5.6E-19 1.9E-23 118.9 0.3 64 23-92 2-65 (65)
11 2nps_A VAMP-4, vesicle-associa 99.7 1.7E-17 5.7E-22 114.2 6.0 67 91-157 7-73 (74)
12 3hd7_A Vesicle-associated memb 99.7 2.5E-17 8.5E-22 117.5 6.7 68 91-158 4-71 (91)
13 1sfc_A VAMP 2, protein (synapt 99.7 3.9E-17 1.3E-21 117.7 6.9 69 89-157 27-95 (96)
14 1gl2_A Endobrevin; membrane pr 99.7 5.1E-17 1.7E-21 109.3 6.4 58 91-148 8-65 (65)
15 1l4a_A Synaptobrevin; snare, s 99.7 1.8E-17 6.3E-22 115.6 2.2 67 90-156 13-79 (80)
16 2nut_C Vesicle-trafficking pro 99.6 4.5E-18 1.5E-22 135.3 -2.8 69 24-98 128-196 (196)
17 4b93_A Vesicle-associated memb 99.6 3.9E-19 1.3E-23 141.2 -10.2 70 25-100 120-189 (189)
18 1urq_A M-tomosyn isoform; tran 99.6 1.7E-15 5.7E-20 101.5 6.1 58 93-150 5-62 (63)
19 1urq_A M-tomosyn isoform; tran 99.6 1.1E-16 3.6E-21 107.3 -0.6 59 30-94 4-62 (63)
20 2kog_A Vesicle-associated memb 99.5 1.1E-16 3.8E-21 119.4 -4.4 71 89-159 30-100 (119)
21 2nut_C Vesicle-trafficking pro 99.4 8.5E-15 2.9E-19 116.3 -2.8 64 90-153 132-195 (196)
22 3kyq_A YKT6, synaptobrevin hom 99.3 2.7E-15 9.2E-20 120.3 -10.6 63 24-92 132-194 (199)
23 4b93_A Vesicle-associated memb 99.3 4.3E-15 1.5E-19 117.8 -11.9 63 91-153 124-186 (189)
24 3kyq_A YKT6, synaptobrevin hom 99.2 4.7E-14 1.6E-18 113.1 -7.0 58 91-148 137-194 (199)
25 3fie_C Fragment of vesicle-ass 98.5 4.7E-11 1.6E-15 72.3 -11.4 35 24-58 3-37 (38)
26 3zym_A Phosphatidylinositol-bi 98.2 4.1E-07 1.4E-11 77.0 2.8 32 29-60 279-310 (310)
27 3zym_A Phosphatidylinositol-bi 97.8 5.2E-05 1.8E-09 64.1 7.6 64 53-122 247-310 (310)
28 3fie_C Fragment of vesicle-ass 97.7 3.3E-07 1.1E-11 55.2 -5.2 30 91-120 8-37 (38)
29 1qu7_A Methyl-accepting chemot 77.0 9.6 0.00033 30.0 7.7 102 33-140 122-223 (227)
30 1txp_A HnRNP C, heterogeneous 68.8 4 0.00014 22.4 2.4 25 33-61 2-26 (28)
31 3zx6_A HAMP, methyl-accepting 63.9 14 0.00049 30.5 6.2 55 89-143 252-306 (341)
32 3hd7_B Syntaxin-1A; membrane p 50.4 59 0.002 22.6 6.7 24 49-72 12-35 (109)
33 1t3j_A Mitofusin 1; coiled coi 45.5 41 0.0014 23.5 5.1 41 30-70 36-76 (96)
34 3ghg_A Fibrinogen alpha chain; 43.0 18 0.00063 32.6 3.6 97 30-133 53-151 (562)
35 2pjw_V Vacuolar protein sortin 38.1 78 0.0027 21.7 5.5 44 25-68 28-71 (91)
36 1uk5_A BAG-family molecular ch 31.5 1.4E+02 0.0048 21.2 6.3 21 23-43 23-43 (111)
37 1deq_A Fibrinogen (alpha chain 28.9 1.9E+02 0.0065 25.0 7.5 21 83-103 111-131 (390)
38 2ch7_A Methyl-accepting chemot 27.4 1.1E+02 0.0039 23.8 5.7 25 123-147 278-302 (309)
39 2ch7_A Methyl-accepting chemot 25.7 99 0.0034 24.2 5.0 9 131-139 279-287 (309)
40 2ygg_A Sodium/hydrogen exchang 23.9 78 0.0027 20.9 3.3 22 36-57 6-27 (70)
41 1pwb_A SP-D, PSP-D, pulmonary 22.9 73 0.0025 23.0 3.5 13 32-44 33-45 (177)
42 2nps_B Syntaxin 13, vesicle-as 21.7 1.6E+02 0.0055 18.6 5.6 43 29-71 5-47 (71)
43 3oja_B Anopheles plasmodium-re 21.5 3.8E+02 0.013 22.9 9.8 8 127-134 544-551 (597)
44 3c98_B Syntaxin-1A; protein co 20.6 2.7E+02 0.0093 20.8 7.8 13 32-44 42-54 (279)
45 3uun_A Dystrophin; triple heli 20.2 1.6E+02 0.0055 19.1 4.6 19 53-71 52-70 (119)
No 1
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.86 E-value=1.1e-23 Score=157.40 Aligned_cols=83 Identities=51% Similarity=0.677 Sum_probs=76.8
Q ss_pred CCCCcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhh
Q psy5723 20 PRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQK 99 (162)
Q Consensus 20 ~~~~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~ 99 (162)
|+++++....+++.+++.+|+||++||++||+++|+|||+|++|++||++|+. .|..|+++|+++++++||.+.
T Consensus 23 ~~~~~~~~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~------~S~~F~k~A~kl~rkmwwkn~ 96 (119)
T 2kog_A 23 PAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNL 96 (119)
T ss_dssp CCCCCSSSSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCS------SSHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 44456667789999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred hhhHHHHHH
Q psy5723 100 QVDEVVGIM 108 (162)
Q Consensus 100 KL~iVi~IM 108 (162)
++..+++++
T Consensus 97 K~~iii~~i 105 (119)
T 2kog_A 97 KMMIILGVI 105 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999886654
No 2
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.86 E-value=5.4e-23 Score=143.76 Aligned_cols=72 Identities=53% Similarity=0.637 Sum_probs=63.9
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhh
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQV 101 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL 101 (162)
.++...++|.+++.+|+||++||.+||++||+|||+|+.|+++|++|.. .|..|+++|+++++++||.++|+
T Consensus 9 ~~~~~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~------~s~~F~k~A~~l~rk~wwkn~K~ 80 (80)
T 1l4a_A 9 QPVQQSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQA------GASQFEASAGKLKRKFWWKNCKM 80 (80)
T ss_dssp CCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT------TSTTTTHHHHHHHHHCC------
T ss_pred CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677789999999999999999999999999999999999999999999 99999999999999999999874
No 3
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.85 E-value=6.6e-23 Score=147.96 Aligned_cols=74 Identities=54% Similarity=0.663 Sum_probs=66.7
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD 102 (162)
Q Consensus 23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~ 102 (162)
+.+....++|.+++.+|+||++||++||++||+|||+|+.|+++|++|.. .|..|+++|+++++++||.+.|++
T Consensus 23 ~~~~~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~------~S~~F~k~A~kl~rkmwwkn~K~~ 96 (96)
T 1sfc_A 23 PPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMM 96 (96)
T ss_dssp --CCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34456779999999999999999999999999999999999999999999 999999999999999999999864
No 4
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.84 E-value=3e-22 Score=143.13 Aligned_cols=76 Identities=53% Similarity=0.633 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI 107 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I 107 (162)
+++++++++.+|+||++||++||+++|+|||+||.|+++|++|+. .|..|+++|++++++|||.+.|+..+.++
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~------~s~~F~~~A~~l~rkmwwkn~K~~iii~~ 76 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYWWKNLKMMIILGV 76 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999999999 99999999999999999999999988776
Q ss_pred HH
Q psy5723 108 MR 109 (162)
Q Consensus 108 M~ 109 (162)
++
T Consensus 77 iv 78 (91)
T 3hd7_A 77 IC 78 (91)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 5
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.80 E-value=6.6e-22 Score=136.31 Aligned_cols=72 Identities=25% Similarity=0.439 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723 25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD 102 (162)
Q Consensus 25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~ 102 (162)
+|+..++|.+++.+|+||++||.+||++||+|||+|+.|+++|++|+. .|..|+++|+++++++||.+.|+.
T Consensus 3 ~~~~~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~~ww~n~K~~ 74 (74)
T 2nps_A 3 MGPRNDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSD------NATAFSNRSKQLRRQMWWRGCKIK 74 (74)
T ss_dssp ---CCSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHCC------
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhccC
Confidence 345678999999999999999999999999999999999999999999 999999999999999999999863
No 6
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.75 E-value=1.2e-19 Score=120.62 Aligned_cols=60 Identities=28% Similarity=0.491 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhh
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLS 95 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~ 95 (162)
+++.+++.+|+||++||++||+++|+|||+|+.|+++|++|+. .|..|+++|++++++||
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAV------SAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhC
Confidence 7899999999999999999999999999999999999999999 99999999999999998
No 7
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.75 E-value=1.1e-19 Score=121.55 Aligned_cols=62 Identities=63% Similarity=0.759 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhh
Q psy5723 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLS 95 (162)
Q Consensus 28 ~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~ 95 (162)
..++|.+++.+|+||++||++||+++|+|||+|+.|+++|+.|+. .|..|+++|++++++||
T Consensus 2 ~~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~------~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 2 SNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA------GASQFETSAAKLKRKYW 63 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhC
Confidence 368999999999999999999999999999999999999999999 99999999999999998
No 8
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.73 E-value=5.4e-18 Score=112.65 Aligned_cols=60 Identities=33% Similarity=0.510 Sum_probs=57.5
Q ss_pred hhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhh
Q psy5723 92 SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMS 151 (162)
Q Consensus 92 ~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~ 151 (162)
+++..++.++++|+.||++||++||+|||+|+.|++||++|+..|..|+++|++|++.|.
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 61 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMW 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578889999999999999999999999999999999999999999999999999999884
No 9
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=99.72 E-value=8.8e-18 Score=112.17 Aligned_cols=61 Identities=62% Similarity=0.772 Sum_probs=58.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhh
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMS 151 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~ 151 (162)
.+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|.
T Consensus 3 ~d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~~~s~~F~~~a~~l~r~mW 63 (63)
T 1n7s_A 3 NRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4788999999999999999999999999999999999999999999999999999998874
No 10
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.72 E-value=5.6e-19 Score=118.87 Aligned_cols=64 Identities=23% Similarity=0.393 Sum_probs=52.2
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchh
Q psy5723 23 PQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKS 92 (162)
Q Consensus 23 ~~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~ 92 (162)
|-+++..++|.+++.+|+||+.||.+||++||+|||+|+.|+++|++|+. .|..|+++|+++++
T Consensus 2 ~~~~~~~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~------~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 2 SHMSAGNDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEA------TSEHFKTTSQKVAR 65 (65)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHC---
T ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH------HHHHHHHHHHHhcC
Confidence 34556679999999999999999999999999999999999999999999 99999999988864
No 11
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=99.70 E-value=1.7e-17 Score=114.19 Aligned_cols=67 Identities=30% Similarity=0.473 Sum_probs=60.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL 157 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~ 157 (162)
.+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|.-+-.|+
T Consensus 7 ~d~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~~ww~n~K~ 73 (74)
T 2nps_A 7 NDKIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKI 73 (74)
T ss_dssp CSSSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999999999999999999999999999998765554
No 12
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=99.70 E-value=2.5e-17 Score=117.53 Aligned_cols=68 Identities=56% Similarity=0.663 Sum_probs=63.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhh
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLS 158 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~ 158 (162)
.+++...+.++++|+.||++||+++|+|||+||+|++||++|+.+|..|+++|+++++.|.-+-.|+.
T Consensus 4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn~K~~ 71 (91)
T 3hd7_A 4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMM 71 (91)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999987755543
No 13
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.69 E-value=3.9e-17 Score=117.65 Aligned_cols=69 Identities=55% Similarity=0.672 Sum_probs=63.6
Q ss_pred CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhh
Q psy5723 89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHL 157 (162)
Q Consensus 89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~ 157 (162)
.-.+++..++.++++|+.||++||++||+|||+|++|++||++|...|..|+++|+++++.|+-+-.|+
T Consensus 27 ~~~d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~~S~~F~k~A~kl~rkmwwkn~K~ 95 (96)
T 1sfc_A 27 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKM 95 (96)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 346899999999999999999999999999999999999999999999999999999999998776654
No 14
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.68 E-value=5.1e-17 Score=109.26 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=52.4
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGL 148 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~ 148 (162)
.+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|++|++
T Consensus 8 ~d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~L~~~s~~F~k~A~~l~r 65 (65)
T 1gl2_A 8 NDRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVAR 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999999999999999999999999999999999999999864
No 15
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.66 E-value=1.8e-17 Score=115.61 Aligned_cols=67 Identities=52% Similarity=0.649 Sum_probs=59.8
Q ss_pred chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhh
Q psy5723 90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINH 156 (162)
Q Consensus 90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~ 156 (162)
-.+++..++.++++|+.||++||++||+|||+|+.|++||++|+.+|..|+++|+++++.|+-+-.|
T Consensus 13 ~~d~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~L~~~s~~F~k~A~~l~rk~wwkn~K 79 (80)
T 1l4a_A 13 QSKRLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADALQAGASQFEASAGKLKRKFWWKNCK 79 (80)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSTTTTHHHHHHHHHCC-----
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3588999999999999999999999999999999999999999999999999999999998766544
No 16
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.64 E-value=4.5e-18 Score=135.26 Aligned_cols=69 Identities=28% Similarity=0.370 Sum_probs=12.1
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhh
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQ 98 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n 98 (162)
++++..++|.+++.+|+||++||++||+++|+|||+|+.|+++|++|+. .|..|+++|++++++|||.+
T Consensus 128 ~~~~~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~------~s~~f~~~a~~l~~~~~~~k 196 (196)
T 2nut_C 128 IDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSS------LSKKYRQDAKYLNMRSTYAK 196 (196)
T ss_dssp SCCC-----------------CCEEEHHHHC--------------------------------------------
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhcC
Confidence 3456789999999999999999999999999999999999999999999 99999999999999999974
No 17
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.63 E-value=3.9e-19 Score=141.22 Aligned_cols=70 Identities=24% Similarity=0.315 Sum_probs=36.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhh
Q psy5723 25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQ 100 (162)
Q Consensus 25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~K 100 (162)
.++..+++.+++.+|+||++||++||++||+|||+||.|+++|++|.. .|..|+++|++++++|||.+.|
T Consensus 120 d~~~~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~------~s~~f~~~a~~l~r~mwwkn~K 189 (189)
T 4b93_A 120 ENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVD------SSVTFKTTSRNLARAMCMKNIK 189 (189)
T ss_dssp CC-------CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC-------------------------------
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhcC
Confidence 356679999999999999999999999999999999999999999999 9999999999999999999875
No 18
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.59 E-value=1.7e-15 Score=101.50 Aligned_cols=58 Identities=26% Similarity=0.277 Sum_probs=54.1
Q ss_pred hhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Q psy5723 93 KLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSM 150 (162)
Q Consensus 93 Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m 150 (162)
++..++.++.+|.+||.+||++|++|||+|+.|++||++|..+|..|++.|++|.+.|
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSADSFSKHAHEMMLKY 62 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5778899999999999999999999999999999999999999999999999887665
No 19
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.58 E-value=1.1e-16 Score=107.35 Aligned_cols=59 Identities=20% Similarity=0.220 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhh
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKL 94 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km 94 (162)
.+++.++.+|++|++||.+||+++++|||+|+.|++||++|.. +|..|.+.|.+|++|+
T Consensus 4 ~~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~------~A~~F~~~A~~l~~Ky 62 (63)
T 1urq_A 4 GGIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMS------SADSFSKHAHEMMLKY 62 (63)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 4789999999999999999999999999999999999999999 9999999999888765
No 20
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=99.53 E-value=1.1e-16 Score=119.37 Aligned_cols=71 Identities=54% Similarity=0.643 Sum_probs=65.1
Q ss_pred CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhhhhhhhc
Q psy5723 89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQINHLSA 159 (162)
Q Consensus 89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~~~~~~~ 159 (162)
.-.+++..++.++++|+.||++||+++|+|||+||+|++||++|+.+|..|+++|+++++.|.-+-.++.+
T Consensus 30 ~~~d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~i 100 (119)
T 2kog_A 30 TSNRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMI 100 (119)
T ss_dssp SSCSHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999776655443
No 21
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=99.39 E-value=8.5e-15 Score=116.26 Aligned_cols=64 Identities=25% Similarity=0.439 Sum_probs=10.0
Q ss_pred chhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhh
Q psy5723 90 PKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQ 153 (162)
Q Consensus 90 Lk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~ 153 (162)
-.+++..++.++++|+.||++||++||+|||+||.|++||++|+.+|..|+++|+++++.|.-+
T Consensus 132 ~~d~l~~~~~~l~ev~~im~~ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~~~~~~~ 195 (196)
T 2nut_C 132 ARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKANNLSSLSKKYRQDAKYLNMRSTYA 195 (196)
T ss_dssp -----------------CCEEEHHHHC-------------------------------------
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999999999999999999999999999999998643
No 22
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.31 E-value=2.7e-15 Score=120.34 Aligned_cols=63 Identities=25% Similarity=0.355 Sum_probs=58.6
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchh
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKS 92 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~ 92 (162)
++++..+++.+++.+|+||++||++||+++|+|||+||+|++||++|+. .|..|+++|+++++
T Consensus 132 ~dp~~~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~------~s~~F~k~a~~lns 194 (199)
T 3kyq_A 132 QNPREADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGT------QSKAFYKTARKQNS 194 (199)
T ss_dssp TSGGGCCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCH------HHHHHHHHHHHHC-
T ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH------HHHHHHHHHHHHhh
Confidence 3567779999999999999999999999999999999999999999999 99999999988874
No 23
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=99.26 E-value=4.3e-15 Score=117.85 Aligned_cols=63 Identities=29% Similarity=0.391 Sum_probs=35.7
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhh
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSRQ 153 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~~ 153 (162)
.+++..++.++++|+.||++||++||+|||+||.|++||++|+.+|..|+++|++|++.|+-+
T Consensus 124 ~d~l~~~~~~l~ev~~im~~Ni~~vl~Rge~l~~L~~ks~~L~~~s~~f~~~a~~l~r~mwwk 186 (189)
T 4b93_A 124 LDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMK 186 (189)
T ss_dssp -----CCHHHHHTTTTCCEECCCCBCTTSSBCCCCEETTCC----------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999754
No 24
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=99.24 E-value=4.7e-14 Score=113.11 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=55.2
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGL 148 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~ 148 (162)
.+++..++.++++|+.||++||++||+|||+||+|++||++|+.+|..|+++|+++|.
T Consensus 137 ~d~l~~~q~el~evk~iM~~NI~~vl~RgekLd~L~~ks~~L~~~s~~F~k~a~~lns 194 (199)
T 3kyq_A 137 ADPMSKVQAELDETKIILHNTMESLLERGEKLDDLVSKSEVLGTQSKAFYKTARKQNS 194 (199)
T ss_dssp CCCCHHHHHHHHTCCCEEESSGGGTSCTTCCHHHHHHHCSSSCHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999999999999999999999873
No 25
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=98.48 E-value=4.7e-11 Score=72.31 Aligned_cols=35 Identities=69% Similarity=0.934 Sum_probs=30.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhh
Q psy5723 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQ 58 (162)
Q Consensus 24 ~~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRge 58 (162)
++....+++.+++.+|+||++||.+||+++|+||+
T Consensus 3 ~~~~~~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 3 PNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp -CCCCCCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 34455689999999999999999999999999996
No 26
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=98.23 E-value=4.1e-07 Score=77.03 Aligned_cols=32 Identities=38% Similarity=0.645 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKL 60 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL 60 (162)
.+++.+++.||+||++||++||+++|+|||+|
T Consensus 279 ~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 279 MDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 47999999999999999999999999999987
No 27
>3zym_A Phosphatidylinositol-binding clathrin assembly PR vesicle-associated membrane protein...; endocytosis, synaptobrevin, VAMP2, VAMP3, AP180; HET: PO4; 2.03A {Rattus norvegicus}
Probab=97.79 E-value=5.2e-05 Score=64.07 Aligned_cols=64 Identities=28% Similarity=0.369 Sum_probs=33.3
Q ss_pred HHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhH
Q psy5723 53 VLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKL 122 (162)
Q Consensus 53 vleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekL 122 (162)
.....++|.....-...+.- .+..|=+-.....+++..++.++++|++||++||++||+|||||
T Consensus 247 f~~Q~e~L~~Fy~~ck~l~l------~~~~iP~L~~~p~d~l~~lq~~i~ev~~im~~ni~~vl~rge~l 310 (310)
T 3zym_A 247 FLTRMTRISEFLKVAEQVGI------DRGDISGSGSGHMDRVRNLQSEVEGVKNIMTQNVERILARGENL 310 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTC------------------------CHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHcCC------CCCCCCCCCcccchHHHHHHHHHHHHHHHHHHhHHHHHhccCCC
Confidence 34445555555555554442 22234333344467899999999999999999999999999986
No 28
>3fie_C Fragment of vesicle-associated membrane protein 2; BONT F, VAMP, inhibitor, complex structure, acetylation, cell junction, hydrolase; 2.10A {Clostridium botulinum}
Probab=97.71 E-value=3.3e-07 Score=55.22 Aligned_cols=30 Identities=67% Similarity=0.908 Sum_probs=28.0
Q ss_pred hhhhhhhhhhhhHHHHHHHHhHHHHHhhhh
Q psy5723 91 KSKLSESQKQVDEVVGIMRVNVEKVLERDQ 120 (162)
Q Consensus 91 k~Km~~~n~KL~iVi~IM~~NI~kvL~Rge 120 (162)
.+++...+.++++|+.||++||++||+||+
T Consensus 8 ~d~l~~vq~qvdeVk~IM~~NIdkvLeRg~ 37 (38)
T 3fie_C 8 NRRLQQTQAQVDEVVDIMRVNVDKVLERDC 37 (38)
T ss_dssp CCSSCEESCCCCCSCCCCTTTHHHHSCCBC
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHcCC
Confidence 477889999999999999999999999996
No 29
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=77.02 E-value=9.6 Score=30.02 Aligned_cols=102 Identities=11% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHHHHHhH
Q psy5723 33 QQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGIMRVNV 112 (162)
Q Consensus 33 ~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~IM~~NI 112 (162)
..+..-|+++...+.+..+.+-+-++.++.+.+..+.+.. ........+..+......+...+..+..+..++-
T Consensus 122 ~~I~~~i~~~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 195 (227)
T 1qu7_A 122 REIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVTRVTD------IMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 195 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555556555555554444 2222222222222333333344444444444444
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHhh
Q psy5723 113 EKVLERDQKLSELDNRANALQQGASQFE 140 (162)
Q Consensus 113 ~kvL~RgekLe~L~~kt~~L~~~s~~F~ 140 (162)
..+-+--...+.|.+.++.|......|+
T Consensus 196 ~~~~~~~~~~~~L~~~a~~L~~~v~~Fk 223 (227)
T 1qu7_A 196 ALVEQSAAAAAALEEQASRLTEAVAVFR 223 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4333333344445555555555555553
No 30
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=68.78 E-value=4 Score=22.44 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q psy5723 33 QQTQAQVDEVVDIMKTNVEKVLERDQKLS 61 (162)
Q Consensus 33 ~~l~~~v~eV~~IM~~Ni~kvleRgekL~ 61 (162)
+.++.++..++ .|||.+|+|=|+++
T Consensus 2 Q~IkkELtQIK----~kvDsLLe~Le~~~ 26 (28)
T 1txp_A 2 QAIKKELTQIK----QKVDSLLENLEKIE 26 (28)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHH----HHHHHHHHHHHhhh
Confidence 46777777766 48999999887764
No 31
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=63.94 E-value=14 Score=30.49 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=32.3
Q ss_pred CchhhhhhhhhhhhHHHHHHHHhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q psy5723 89 DPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFEHVP 143 (162)
Q Consensus 89 rLk~Km~~~n~KL~iVi~IM~~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a 143 (162)
.+...+..+...+..+..+..++-..+-+-....+.|.+.++.|......|+-..
T Consensus 252 ~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~l~~~a~~L~~~v~~Fki~~ 306 (341)
T 3zx6_A 252 EQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRLTEAVAVFRIQQ 306 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCBCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 3344455555566666666666655555555556666666677766666665443
No 32
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=50.44 E-value=59 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=13.8
Q ss_pred hHHHHHHhhhhhHHHHHHhccccC
Q psy5723 49 NVEKVLERDQKLSELDDRAGNLGK 72 (162)
Q Consensus 49 Ni~kvleRgekL~~L~~ks~~L~~ 72 (162)
-+..+-+|.+.+..|+..-.+|.+
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~ 35 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHD 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555555
No 33
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=45.48 E-value=41 Score=23.50 Aligned_cols=41 Identities=12% Similarity=0.230 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhccc
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L 70 (162)
.-...+..+|++|+.-|.+=|..+-..-.+||.+..++.-|
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~L 76 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLL 76 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 45778899999999999999988888888887777666544
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.99 E-value=18 Score=32.62 Aligned_cols=97 Identities=10% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHH-HhccccC-CCCCCCCCCcccccCCCchhhhhhhhhhhhHHHHH
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDD-RAGNLGK-MDGGFAGNSSGRQQKSDPKSKLSESQKQVDEVVGI 107 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~-ks~~L~~-~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~iVi~I 107 (162)
.-|.+....|....+-|+++++.+-+.-...+.+.. ..+.|.. ........+.|..-+..|++++..++.+|+..+
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQl-- 130 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKV-- 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH--
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345555555555566666666666444444444322 2233322 000000222333334466666666666655543
Q ss_pred HHHhHHHHHhhhhhHHHHHHHHHHHH
Q psy5723 108 MRVNVEKVLERDQKLSELDNRANALQ 133 (162)
Q Consensus 108 M~~NI~kvL~RgekLe~L~~kt~~L~ 133 (162)
.|| ++|+.- |++++.+-..|.
T Consensus 131 --snI-rvLQsn--Ledq~~kIQRLE 151 (562)
T 3ghg_A 131 --QHI-QLLQKN--VRAQLVDMKRLE 151 (562)
T ss_dssp --HHH-HHHHHH--HHHHHHHHHHHH
T ss_pred --HHH-HHHHHH--HHHHHHHHHHHH
Confidence 333 333332 455555555554
No 35
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=38.09 E-value=78 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhc
Q psy5723 25 QIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAG 68 (162)
Q Consensus 25 ~~~~~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~ 68 (162)
+.....+++.+...+..++--|..++++-.++-+.|-+|.+|-.
T Consensus 28 ~i~~d~~LqeLy~kv~~lRPKL~r~l~~~~~K~~~L~~mn~Kls 71 (91)
T 2pjw_V 28 EILEDSKLQNLAQRVFASKARLNYALNDKAQKYNTLIEMNGKIS 71 (91)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556789999999999999999999999999988888877653
No 36
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=31.50 E-value=1.4e+02 Score=21.23 Aligned_cols=21 Identities=10% Similarity=0.202 Sum_probs=13.6
Q ss_pred CcChhHHHHHHHHHHHHHHHH
Q psy5723 23 PQQIAAQKRLQQTQAQVDEVV 43 (162)
Q Consensus 23 ~~~~~~~~kl~~l~~~v~eV~ 43 (162)
|++.+...+|+.+..+|++..
T Consensus 23 ~~~~p~~~~I~~I~~eV~~L~ 43 (111)
T 1uk5_A 23 PPKHPGVLKVEAILEKVQGLE 43 (111)
T ss_dssp CCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHH
Confidence 344555678888877776643
No 37
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.93 E-value=1.9e+02 Score=24.96 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=9.9
Q ss_pred ccccCCCchhhhhhhhhhhhH
Q psy5723 83 GRQQKSDPKSKLSESQKQVDE 103 (162)
Q Consensus 83 F~~~a~rLk~Km~~~n~KL~i 103 (162)
|..-+..|++++.-++.+|..
T Consensus 111 ~~e~s~eLe~~i~~lk~~V~~ 131 (390)
T 1deq_A 111 FKQINEDLRSRIEILRRKVIE 131 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555544444
No 38
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=27.39 E-value=1.1e+02 Score=23.78 Aligned_cols=25 Identities=4% Similarity=0.080 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhc
Q psy5723 123 SELDNRANALQQGASQFEHVPTFHG 147 (162)
Q Consensus 123 e~L~~kt~~L~~~s~~F~k~a~~~~ 147 (162)
+.+...++.+...+..|...+..|+
T Consensus 278 ~~~~~~~~~~~~~~~~l~~~~~~L~ 302 (309)
T 2ch7_A 278 QEISASTEEVTSRVQTIRENVQMLK 302 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555544443
No 39
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=25.73 E-value=99 Score=24.16 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=3.2
Q ss_pred HHHHHHHHh
Q psy5723 131 ALQQGASQF 139 (162)
Q Consensus 131 ~L~~~s~~F 139 (162)
.+...+...
T Consensus 279 ~~~~~~~~~ 287 (309)
T 2ch7_A 279 EISASTEEV 287 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 40
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=23.92 E-value=78 Score=20.87 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHhh
Q psy5723 36 QAQVDEVVDIMKTNVEKVLERD 57 (162)
Q Consensus 36 ~~~v~eV~~IM~~Ni~kvleRg 57 (162)
..+++++++|...|+.++=+|.
T Consensus 6 ~~~~e~ir~IL~~NLykiRqr~ 27 (70)
T 2ygg_A 6 KDKEEEIRKILRNNLQKTRQRL 27 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999998774
No 41
>1pwb_A SP-D, PSP-D, pulmonary surfactant-associated protein D; collectin, C-type lectin, alpha-helical coiled coil, carbohydrate recognition domain; HET: GLC; 1.40A {Homo sapiens} SCOP: d.169.1.1 h.1.1.1 PDB: 1pw9_A* 3ikn_A* 3ikp_A* 3ikq_A* 3ikr_A* 2rie_A* 2ggx_A* 2ggu_A* 2ork_A* 2orj_A* 2ria_A* 2rib_A* 2ric_A* 2rid_A* 2os9_A* 3dbz_A 3g81_A* 3g83_A* 1b08_A 3g84_A* ...
Probab=22.90 E-value=73 Score=23.04 Aligned_cols=13 Identities=23% Similarity=0.325 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q psy5723 32 LQQTQAQVDEVVD 44 (162)
Q Consensus 32 l~~l~~~v~eV~~ 44 (162)
+..|+.++.+.+.
T Consensus 33 l~~L~~~l~~Lq~ 45 (177)
T 1pwb_A 33 VEALQGQVQHLQA 45 (177)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555544
No 42
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=21.71 E-value=1.6e+02 Score=18.56 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHhcccc
Q psy5723 29 QKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLG 71 (162)
Q Consensus 29 ~~kl~~l~~~v~eV~~IM~~Ni~kvleRgekL~~L~~ks~~L~ 71 (162)
..-+.+|...+.|+..|+.+=-..|-+-|+-|+.++...+.-.
T Consensus 5 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~ 47 (71)
T 2nps_B 5 ETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSE 47 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4568889999999999999988889999999998888665433
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=21.50 E-value=3.8e+02 Score=22.86 Aligned_cols=8 Identities=25% Similarity=0.318 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy5723 127 NRANALQQ 134 (162)
Q Consensus 127 ~kt~~L~~ 134 (162)
.+.+.|..
T Consensus 544 ~~~~~le~ 551 (597)
T 3oja_B 544 QENIALEK 551 (597)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 44
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.64 E-value=2.7e+02 Score=20.83 Aligned_cols=13 Identities=23% Similarity=0.366 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q psy5723 32 LQQTQAQVDEVVD 44 (162)
Q Consensus 32 l~~l~~~v~eV~~ 44 (162)
+.....+|+++..
T Consensus 42 m~ef~~~ve~i~~ 54 (279)
T 3c98_B 42 MDEFFEQVEEIRG 54 (279)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555655543
No 45
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=20.22 E-value=1.6e+02 Score=19.11 Aligned_cols=19 Identities=5% Similarity=0.099 Sum_probs=9.8
Q ss_pred HHHhhhhhHHHHHHhcccc
Q psy5723 53 VLERDQKLSELDDRAGNLG 71 (162)
Q Consensus 53 vleRgekL~~L~~ks~~L~ 71 (162)
|-.+...++.+...+..|-
T Consensus 52 i~~~~~~v~~~~~~g~~L~ 70 (119)
T 3uun_A 52 LTAHQGRVGNILQLGSKLI 70 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3344555555555555553
Done!