Query psy5723
Match_columns 162
No_of_seqs 220 out of 952
Neff 5.9
Searched_HMMs 13730
Date Sat Aug 17 00:57:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5723.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5723hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6qa1 a.159.1.1 (A:297-368) 28.2 7.9 0.00058 24.2 0.7 9 3-11 46-54 (72)
2 d1ykhb1 a.252.1.1 (B:2-130) RN 21.2 19 0.0014 24.5 1.7 27 30-57 2-28 (129)
3 d1zzma1 c.1.9.12 (A:1-259) Put 15.6 70 0.0051 23.0 4.0 43 12-54 205-256 (259)
4 d1ugoa_ a.7.7.1 (A:) BAG-famil 13.7 63 0.0046 20.7 2.8 25 19-43 7-31 (99)
5 d1u00a1 a.8.4.1 (A:504-615) Ch 11.6 1.4E+02 0.01 18.8 4.2 40 110-152 64-103 (112)
6 d2o97b1 a.55.1.1 (B:1-90) HU p 10.3 86 0.0063 19.1 2.6 27 35-61 17-43 (90)
7 d1st6a5 a.24.9.1 (A:489-646) V 10.2 1.1E+02 0.0081 21.2 3.4 50 51-102 51-100 (158)
8 d1p71a_ a.55.1.1 (A:) HU prote 9.7 92 0.0067 19.0 2.6 28 34-61 16-43 (94)
9 d1gg2g_ a.137.3.1 (G:) Transdu 9.3 50 0.0037 18.9 1.0 16 11-26 38-53 (54)
10 d1j6oa_ c.1.9.12 (A:) Hypothet 9.2 2E+02 0.015 20.5 4.8 43 12-54 204-255 (260)
No 1
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.25 E-value=7.9 Score=24.20 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=6.7
Q ss_pred CCCCCCCCC
Q psy5723 3 DAGLQPGGA 11 (162)
Q Consensus 3 ~~~~~~~~~ 11 (162)
-|++|||||
T Consensus 46 Ip~LPPGGG 54 (72)
T d1a6qa1 46 IPSLPPGGE 54 (72)
T ss_dssp CSSCCTTTG
T ss_pred CCCCCCCcc
Confidence 378888875
No 2
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.20 E-value=19 Score=24.45 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q psy5723 30 KRLQQTQAQVDEVVDIMKTNVEKVLERD 57 (162)
Q Consensus 30 ~kl~~l~~~v~eV~~IM~~Ni~kvleRg 57 (162)
|+|+++|..|++....|-..|. +|++.
T Consensus 2 DrLTQLQd~lnqla~~f~nsig-~L~~~ 28 (129)
T d1ykhb1 2 DRMTQLQICLDQMTEQFCATLN-YIDKN 28 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHS
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 7899999999999999999998 44443
No 3
>d1zzma1 c.1.9.12 (A:1-259) Putative deoxyribonuclease YjjV {Escherichia coli [TaxId: 562]}
Probab=15.59 E-value=70 Score=23.00 Aligned_cols=43 Identities=16% Similarity=0.141 Sum_probs=27.2
Q ss_pred CCCCCCCCCC-------CCcC-hhHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q psy5723 12 GDDGIVGGPR-------TPQQ-IAAQKRLQQTQA-QVDEVVDIMKTNVEKVL 54 (162)
Q Consensus 12 ~~~~~~~~~~-------~~~~-~~~~~kl~~l~~-~v~eV~~IM~~Ni~kvl 54 (162)
|-|+|+.+|. .|.+ ......++++++ .+++|..++.+|..++.
T Consensus 205 ETD~P~~~~~~~~~~~~~P~~~~~~~~~iA~i~~~~~~ev~~~~~~N~~rlf 256 (259)
T d1zzma1 205 ETDAPDMPLNGFQGQPNRPEQAARVFAVLCELRREPADEIAQALLNNTYTLF 256 (259)
T ss_dssp CCCBTSSCCTTCTTSCCCGGGHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCcCCCcCCCCCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4577766653 1222 222345666654 68999999999988764
No 4
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.71 E-value=63 Score=20.73 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=17.3
Q ss_pred CCCCCcChhHHHHHHHHHHHHHHHH
Q psy5723 19 GPRTPQQIAAQKRLQQTQAQVDEVV 43 (162)
Q Consensus 19 ~~~~~~~~~~~~kl~~l~~~v~eV~ 43 (162)
+++.|++-++..+|..++.+|+++.
T Consensus 7 ~~~~~~~~~sl~~I~~i~~ev~~L~ 31 (99)
T d1ugoa_ 7 GMDMGNQHPSISRLQEIQREVKAIE 31 (99)
T ss_dssp CCCCSCCCTTHHHHHHHHHHHHHSH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 3555555556788888888888655
No 5
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]}
Probab=11.63 E-value=1.4e+02 Score=18.77 Aligned_cols=40 Identities=10% Similarity=0.258 Sum_probs=29.7
Q ss_pred HhHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcchhhh
Q psy5723 110 VNVEKVLERDQKLSELDNRANALQQGASQFEHVPTFHGLSMSR 152 (162)
Q Consensus 110 ~NI~kvL~RgekLe~L~~kt~~L~~~s~~F~k~a~~~~~~m~~ 152 (162)
+.+.+.|+. +..+.+...++.|...+..|- ++.++.++.+
T Consensus 64 ~~l~~~l~~-~d~~~I~~~~~~L~~~~~~~a--~~~m~~~~~~ 103 (112)
T d1u00a1 64 AHLSEVAQG-DDVDAIEQAIKNVDKQTQDFA--ARRMDQSVRR 103 (112)
T ss_dssp HHHHHHTTS-SCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 445566654 457899999999999999994 5777766654
No 6
>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]}
Probab=10.26 E-value=86 Score=19.08 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhhhhH
Q psy5723 35 TQAQVDEVVDIMKTNVEKVLERDQKLS 61 (162)
Q Consensus 35 l~~~v~eV~~IM~~Ni~kvleRgekL~ 61 (162)
.+.+++++.+.+.+-|...|.+|++++
T Consensus 17 ~~~~~~~~v~~~~~~i~~~L~~~~~v~ 43 (90)
T d2o97b1 17 SKAAAGRALDAIIASVTESLKEGDDVA 43 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCeEe
Confidence 467888888889999999999998763
No 7
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.22 E-value=1.1e+02 Score=21.16 Aligned_cols=50 Identities=12% Similarity=0.300 Sum_probs=32.0
Q ss_pred HHHHHhhhhhHHHHHHhccccCCCCCCCCCCcccccCCCchhhhhhhhhhhh
Q psy5723 51 EKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLSESQKQVD 102 (162)
Q Consensus 51 ~kvleRgekL~~L~~ks~~L~~~~~~fa~s~~F~~~a~rLk~Km~~~n~KL~ 102 (162)
..|+..-+.|+.|.++-.+|.....| .+.+...-|.++.+++..+..++.
T Consensus 51 ~~Il~~C~el~~l~~~LadLr~~G~G--~sPeA~~lA~qi~~kL~dL~~~v~ 100 (158)
T d1st6a5 51 QDLLAKCDRVDQLAAQLADLAARGEG--ESPQARAIAAQLQDSLKDLKARMQ 100 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSTTSSCC--SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877777774433 555555556566666555544443
No 8
>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
Probab=9.68 E-value=92 Score=19.05 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhH
Q psy5723 34 QTQAQVDEVVDIMKTNVEKVLERDQKLS 61 (162)
Q Consensus 34 ~l~~~v~eV~~IM~~Ni~kvleRgekL~ 61 (162)
-.+.++..+.+.+.+-|-..|.+|+++.
T Consensus 16 ls~~~~~~~v~~~~~~i~~~L~~~~~V~ 43 (94)
T d1p71a_ 16 VTKKQADAVLTAALETIIEAVSSGDKVT 43 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHhcCCEEE
Confidence 3467888899999999999999998764
No 9
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.29 E-value=50 Score=18.94 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCcCh
Q psy5723 11 AGDDGIVGGPRTPQQI 26 (162)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (162)
.++|.|+.|++...||
T Consensus 38 ~~~Dpll~g~~~~~NP 53 (54)
T d1gg2g_ 38 AKEDPLLTPVPASENP 53 (54)
T ss_dssp GGGCTTTSCCCTTTSC
T ss_pred CcCCCCcCCCCCCCCC
Confidence 4579999998655555
No 10
>d1j6oa_ c.1.9.12 (A:) Hypothetical protein TM0667 {Thermotoga maritima [TaxId: 2336]}
Probab=9.25 E-value=2e+02 Score=20.45 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred CCCCCCCCCC-------CCcC-hhHHHHHHHHHH-HHHHHHHHHHHhHHHHH
Q psy5723 12 GDDGIVGGPR-------TPQQ-IAAQKRLQQTQA-QVDEVVDIMKTNVEKVL 54 (162)
Q Consensus 12 ~~~~~~~~~~-------~~~~-~~~~~kl~~l~~-~v~eV~~IM~~Ni~kvl 54 (162)
|-|+|.-+|. .|.+ +.....+++++. .+++|..+..+|..++-
T Consensus 204 ETD~P~l~p~~~~~~~n~P~~l~~v~~~iA~~~~~~~~ev~~~~~~N~~rlF 255 (260)
T d1j6oa_ 204 ETDCPFLPPQPFRGKRNEPKYLKYVVETISQVLGVPEAKVDEATTENARRIF 255 (260)
T ss_dssp CCCBTSCCCGGGTTSCCCGGGHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCCCcccCCCCCChHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 4577766652 2222 222355666554 68888888888888765
Done!