RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5723
(162 letters)
>gnl|CDD|201526 pfam00957, Synaptobrevin, Synaptobrevin.
Length = 89
Score = 69.9 bits (172), Expect = 2e-16
Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 92 SKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
KL++ Q QVDEV IM N++KVLER +KL L ++ LQ A QF
Sbjct: 3 DKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENLQSSAQQFR 51
Score = 66.0 bits (162), Expect = 5e-15
Identities = 23/43 (53%), Positives = 30/43 (69%)
Query: 28 AQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
+ +L + QAQVDEV DIM N++KVLER +KL L D+ NL
Sbjct: 1 SNDKLNKIQAQVDEVKDIMTENIDKVLERGEKLDLLVDKTENL 43
>gnl|CDD|227472 COG5143, SNC1, Synaptobrevin/VAMP-like protein [Intracellular
trafficking and secretion].
Length = 190
Score = 38.2 bits (89), Expect = 6e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 24 QQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
+ + Q +L Q Q +++E ++ N+EKVL RD+KL L D + L
Sbjct: 123 RDPSIQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSIL 169
Score = 34.7 bits (80), Expect = 0.010
Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 27/90 (30%)
Query: 36 QAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQKSDPKSKLS 95
+ +D+ V IM+ N++KV+E+ + + D+ L
Sbjct: 100 EQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQL------------------------- 134
Query: 96 ESQKQVDEVVGIMRVNVEKVLERDQKLSEL 125
Q++++E ++ N+EKVL RD+KL L
Sbjct: 135 --QQELEETKRVLNKNIEKVLYRDEKLDLL 162
Score = 32.8 bits (75), Expect = 0.040
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 85 QQKSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQF 139
+ K S ++ +D+ VGIMRVN++KV+E+ + + ++ + LQQ +
Sbjct: 87 NSIATEFLKSSALEQLIDDTVGIMRVNIDKVIEKGYRDPSIQDKLDQLQQELEET 141
>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional.
Length = 447
Score = 31.2 bits (71), Expect = 0.20
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 11/51 (21%)
Query: 9 GGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQK 59
G GD I+ P T T +++DE++ I +VE+++++
Sbjct: 405 GKEGDAVIIAPPMT-----------ITYSELDELLSIFAKSVEEMMQKGGH 444
Score = 26.6 bits (59), Expect = 7.3
Identities = 5/28 (17%), Positives = 18/28 (64%)
Query: 94 LSESQKQVDEVVGIMRVNVEKVLERDQK 121
++ + ++DE++ I +VE+++++
Sbjct: 417 MTITYSELDELLSIFAKSVEEMMQKGGH 444
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 29.7 bits (67), Expect = 0.64
Identities = 22/110 (20%), Positives = 39/110 (35%), Gaps = 19/110 (17%)
Query: 51 EKVLERDQKLSELDDRAGNL----------GKMDGGFAGNSS--GRQQKSDPKSKLSESQ 98
E++ E +++ EL+ +L K + + + L E
Sbjct: 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWF 130
Query: 99 KQVDEVVGIMRVNVEKV-------LERDQKLSELDNRANALQQGASQFEH 141
+ D + + + E +++LSEL N NAL G SQ H
Sbjct: 131 QAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALLTGKSQRSH 180
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 29.6 bits (66), Expect = 0.83
Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQ 86
A+QK+LQ + Q+ V +K ++ + Q L RA A ++ QQ
Sbjct: 172 ASQKQLQASATQLKSQVLDLKLRSAQIEQEAQ---NLATRANAAQARTEELARRAAAAQQ 228
Query: 87 KSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLSELDNRANALQQGASQFE 140
+ + + Q+ + + E++ ER+++L L+ L+Q +Q E
Sbjct: 229 TA---QAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLE 279
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 28.3 bits (64), Expect = 1.9
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 24 QQIAAQKRLQQTQAQVDEVVDIMKTN-------VEKVLERDQKLSE 62
Q+ KRL ++ V E + V + LE + +LS+
Sbjct: 247 QEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQ 292
>gnl|CDD|237304 PRK13206, ureC, urease subunit alpha; Reviewed.
Length = 573
Score = 28.1 bits (63), Expect = 2.0
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 3 DAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVD---------IMKTNVEKV 53
D PG AGD+ + GG + ++ Q R + + D V+ I+K +V
Sbjct: 35 DRSGGPGLAGDEAVFGGGKVIRESMGQGRATRAEGAPDTVITGAVILDHWGIVKADVGI- 93
Query: 54 LERDQKLSELDDRAGNLGKMDG 75
RD ++ + +AGN MDG
Sbjct: 94 --RDGRIVAI-GKAGNPDIMDG 112
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 2.2
Identities = 22/108 (20%), Positives = 45/108 (41%), Gaps = 12/108 (11%)
Query: 30 KRLQQTQA-QVDE-VVDIMKTNVEKVLERDQKLSELDDRAGNLGKMDGGFAGNSSGRQQK 87
+ L + +++ ++ + K+ KLSE D+ + ++K
Sbjct: 23 EALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNP-----LREEKK 77
Query: 88 SDPKSKLSESQKQVDEVVGIMRVNVEK-VLERDQKLSELDNRANALQQ 134
L E K V+E + +EK + E ++++SEL+N L+Q
Sbjct: 78 KVSVKSLEELIKDVEEELE----KIEKEIKELEEEISELENEIKELEQ 121
>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional.
Length = 461
Score = 28.1 bits (63), Expect = 2.5
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 35 TQAQVDEVVDIMKTNVEKVLER 56
T+A+ DE+V I K V++VL R
Sbjct: 437 TRAEADEIVAIAKDAVDEVLGR 458
>gnl|CDD|236319 PRK08641, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 589
Score = 28.0 bits (63), Expect = 2.5
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 40 DEVVDIMKTNV------EKVLERDQKLSELDDRAGNLGKMD 74
E+ + M NV +K+LE D+K+ EL +R + D
Sbjct: 453 KELGEWMTDNVTVVRENDKLLETDEKIQELMERYKRISVND 493
>gnl|CDD|227311 COG4977, COG4977, Transcriptional regulator containing an amidase
domain and an AraC-type DNA-binding HTH domain
[Transcription].
Length = 328
Score = 27.6 bits (62), Expect = 2.6
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 17 VGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAG 68
+ Q++ RL ++ +++M+ N LE L EL DRAG
Sbjct: 200 IRSGGDRQRLPLLGRLGHRDPRLLRAIELMEAN----LEEPLSLEELADRAG 247
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 27.7 bits (63), Expect = 3.5
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSE 62
AA + L + +A + E+ ++K ++ ER + L E
Sbjct: 691 AALEYLNEQEALLKELAALLKAKPSELPERVEALLE 726
>gnl|CDD|111339 pfam02433, FixO, Cytochrome C oxidase, mono-heme subunit/FixO. The
bacterial oxidase complex, fixNOPQ or cytochrome cbb3,
is thought to be required for respiration in
endosymbiosis. FixO is a membrane bound mono-heme
constituent of the fixNOPQ complex.
Length = 226
Score = 27.2 bits (61), Expect = 3.7
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 16 IVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLERD-----QKLSELD 64
VG P T + I K + QA D + K RD +++E+D
Sbjct: 159 TVGVPYTDEMIENAKADLEAQADPDADTAGLLERYPKAQVRDFDGDPGRVTEMD 212
>gnl|CDD|235602 PRK05776, PRK05776, DNA topoisomerase I; Provisional.
Length = 670
Score = 27.3 bits (61), Expect = 4.7
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 87 KSDPKSKLSESQKQVDEVVGIMRVNVEKVLERDQKLS 123
++ E+++ ++E+ + V KV + + L
Sbjct: 237 ENKKFETKEEAKEILEEIKKTGYLKVTKVEVKIEILE 273
>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family. This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). Pyridoxal
phosphate combines with an alpha-amino acid to form a
compound called a Schiff base or aldimine intermediate,
which depending on the reaction, is the substrate in
four kinds of reactions (1) transamination (movement of
amino groups), (2) racemization (redistribution of
enantiomers), (3) decarboxylation (removing COOH
groups), and (4) various side-chain reactions depending
on the enzyme involved. Pyridoxal phosphate (PLP)
dependent enzymes were previously classified into alpha,
beta and gamma classes, based on the chemical
characteristics (carbon atom involved) of the reaction
they catalyzed. The availability of several structures
allowed a comprehensive analysis of the evolutionary
classification of PLP dependent enzymes, and it was
found that the functional classification did not always
agree with the evolutionary history of these enzymes.
The major groups in this CD corresponds to Aspartate
aminotransferase a, b and c, Tyrosine, Alanine,
Aromatic-amino-acid, Glutamine phenylpyruvate,
1-Aminocyclopropane-1-carboxylate synthase,
Histidinol-phosphate, gene products of malY and cobC,
Valine-pyruvate aminotransferase and Rhizopine
catabolism regulatory protein.
Length = 350
Score = 26.9 bits (60), Expect = 4.9
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 14 DGIVGGPRTPQQIAAQKRLQQTQAQVDEVVDIMKTNVEKVLE 55
GP T Q AA L + ++E+ + + + +LE
Sbjct: 232 PYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRRRDALLE 273
>gnl|CDD|140329 PTZ00308, PTZ00308, ethanolamine-phosphate cytidylyltransferase;
Provisional.
Length = 353
Score = 26.7 bits (59), Expect = 6.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 123 SELDNRANALQQGASQFEHVPTFHGLSMSRQINHLS 158
S L + +Q +S F + PT H L+ SR+I S
Sbjct: 148 SHLLKSVDEVQLESSLFPYTPTSHCLTTSRKIVQFS 183
>gnl|CDD|143440 cd07122, ALDH_F20_ACDH, Coenzyme A acylating aldehyde
dehydrogenase (ACDH), ALDH family 20-like. Coenzyme A
acylating aldehyde dehydrogenase (ACDH, EC=1.2.1.10),
an NAD+ and CoA-dependent acetaldehyde dehydrogenase,
functions as a single enzyme (such as the Ethanolamine
utilization protein, EutE, in Salmonella typhimurium)
or as part of a multifunctional enzyme to convert
acetaldehyde into acetyl-CoA . The E. coli
aldehyde-alcohol dehydrogenase includes the functional
domains, alcohol dehydrogenase (ADH), ACDH, and
pyruvate-formate-lyase deactivase; and the Entamoeba
histolytica aldehyde-alcohol dehydrogenase 2 (ALDH20A1)
includes the functional domains ADH and ACDH and may be
critical enzymes in the fermentative pathway.
Length = 436
Score = 26.7 bits (60), Expect = 6.4
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 27 AAQKRLQQ-TQAQVDEVVDIM 46
AQ+ +Q QVD++V+ +
Sbjct: 10 KAQREFATFSQEQVDKIVEAV 30
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 26.9 bits (60), Expect = 6.5
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 10/88 (11%)
Query: 20 PRTPQQIAAQKRLQQTQAQVDEV---VDIMKTNVEKVLERDQK-----LSELDDRAGNLG 71
PR Q+ ++RL+Q + Q+ ++ +D ++ N + L+ D + LS L +R L
Sbjct: 158 PRRVQRELLEERLKQLEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLE 217
Query: 72 KMDGGF--AGNSSGRQQKSDPKSKLSES 97
K+ + SS R +D +S +++S
Sbjct: 218 KLLEDLERSEESSDRSSSTDTESSIADS 245
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 26.4 bits (59), Expect = 7.2
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 9/83 (10%)
Query: 27 AAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDD------RAGNLGKMDGGFAGN 80
AA++ L+ + + D+ I++ ++K+ +KLS+ D L K D F+
Sbjct: 161 AAKRLLELSVVKSDK---ILENLLKKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRF 217
Query: 81 SSGRQQKSDPKSKLSESQKQVDE 103
++K +K +E
Sbjct: 218 KLKYKKKIKKAAKKLPETYDWEE 240
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 26.3 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 13 DDGIVGGPRTPQQIAAQKRLQQTQAQVDE 41
D GI T I + L Q QA+VDE
Sbjct: 163 DGGI---AATVPTIDRSRLLAQQQARVDE 188
>gnl|CDD|220717 pfam10360, DUF2433, Protein of unknown function (DUF2433). This
is a conserved 120 residue region of a family of
proteins found in fungi. The function is not known.
Length = 132
Score = 25.6 bits (56), Expect = 10.0
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 31 RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELDDRAGNL 70
+L + +A EV D +K VE +L ++ L + A +L
Sbjct: 20 KLSRAKAIFGEVWDTVKDEVETLLTPNESQRNLLENALSL 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.309 0.129 0.345
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,933,013
Number of extensions: 700250
Number of successful extensions: 770
Number of sequences better than 10.0: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 66
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.0 bits)