RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5723
         (162 letters)



>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242
           {Chloroflexus aurantiacus [TaxId: 1108]}
          Length = 346

 Score = 28.4 bits (63), Expect = 0.44
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 3   DAGLQPGGAGDDGIVGGPRTPQQIAAQKRLQQTQAQVDEVVD-IMKTNVEKVLERDQKLS 61
              L  G       +    TP+Q A   R+Q   + ++   + +M     ++L    ++ 
Sbjct: 212 LMRLLQGIGSGQHWIETVLTPEQRAVFDRIQALMSLIEGYGNHVMNAVGRRLLPSFNQIE 271

Query: 62  ELDDR 66
           +   +
Sbjct: 272 QQIAQ 276


>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
           {Pseudomonas cepacia [TaxId: 292]}
          Length = 431

 Score = 27.0 bits (58), Expect = 1.3
 Identities = 3/20 (15%), Positives = 12/20 (60%)

Query: 35  TQAQVDEVVDIMKTNVEKVL 54
           ++ ++D  + ++   +E+ L
Sbjct: 412 SEDEIDLGLSLLGQAIERAL 431


>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
           {Proteus vulgaris [TaxId: 585]}
          Length = 465

 Score = 25.7 bits (55), Expect = 3.1
 Identities = 7/33 (21%), Positives = 12/33 (36%), Gaps = 4/33 (12%)

Query: 31  RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSEL 63
           R   T   +D + D +      + E+   L  L
Sbjct: 418 RRVYTNDHMDYIADALI----GLKEKFATLKGL 446


>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
           {Escherichia coli [TaxId: 562]}
          Length = 467

 Score = 25.3 bits (54), Expect = 4.0
 Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 4/34 (11%)

Query: 31  RLQQTQAQVDEVVDIMKTNVEKVLERDQKLSELD 64
           R   TQ  +D +++  K     V E    +  L 
Sbjct: 420 RATYTQTHMDFIIEAFK----HVKENAANIKGLT 449


>d1g73a_ a.7.4.1 (A:) Smac/diablo {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 157

 Score = 24.1 bits (52), Expect = 7.1
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 26  IAAQKRLQQTQAQVDEVVDIMKTNVEKVLERDQ 58
           I A+  +Q  + QV+EV  + +   E  L   Q
Sbjct: 126 ITARNHIQLVKLQVEEVHQLSR-KAETKLAEAQ 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.129    0.345 

Gapped
Lambda     K      H
   0.267   0.0577    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 519,460
Number of extensions: 20843
Number of successful extensions: 57
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 7
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 49 (23.0 bits)