BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5725
(117 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|324120564|dbj|BAJ78673.1| RNA polymerase II largest subunit [Bemisia tabaci]
Length = 1793
Score = 172 bits (435), Expect = 3e-41, Method: Composition-based stats.
Identities = 79/85 (92%), Positives = 84/85 (98%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELLEKC+IVAGEDQLSKQANENATLLFQCLVRSTLCTKLV+E +RLSSEAFEWLVGE
Sbjct: 1006 GVKELLEKCIIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVSEKFRLSSEAFEWLVGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRFQQAQC+PGEMVGALAAQSLG
Sbjct: 1066 IENRFQQAQCSPGEMVGALAAQSLG 1090
>gi|324120560|dbj|BAJ78671.1| RNA polymerase II largest subunit [Cryptotympana facialis]
Length = 1803
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL+KC+IVAG+D LSKQANENATLLFQCLVRSTLCTKL++E YRLSSEAFEWL GE
Sbjct: 1005 GVKELLQKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKLISEKYRLSSEAFEWLTGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRFQQAQC PGEMVGALAAQSLG
Sbjct: 1065 IENRFQQAQCQPGEMVGALAAQSLG 1089
>gi|324120574|dbj|BAJ78678.1| RNA polymerase II largest subunit [Protohermes grandis]
Length = 1633
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 76/85 (89%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIVAGED+LSKQANENATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 1005 GVRDLLNKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQCAPGEMVGALAAQSLG 1089
>gi|324120578|dbj|BAJ78680.1| RNA polymerase II largest subunit [Chrysoperla nipponensis]
Length = 1705
Score = 165 bits (417), Expect = 4e-39, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED LSKQANENATLLFQCL+RSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 1005 GVRDLLKKCVIVAGEDHLSKQANENATLLFQCLIRSTLCTKCVSEDFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQCAPGEMVGALAAQSLG 1089
>gi|324120582|dbj|BAJ78682.1| RNA polymerase II largest subunit [Eretes sticticus]
Length = 1677
Score = 163 bits (413), Expect = 9e-39, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL++CVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1003 GVRELLQRCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1063 IETRFQQAQCAPGEMVGALAAQSLG 1087
>gi|242011894|ref|XP_002426678.1| predicted protein [Pediculus humanus corporis]
gi|212510849|gb|EEB13940.1| predicted protein [Pediculus humanus corporis]
Length = 1885
Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED LSKQANENATLLFQCLVRSTLCTK V+E+ RLS+EAFEWL+GE
Sbjct: 997 GVRDLLQKCVIVAGEDHLSKQANENATLLFQCLVRSTLCTKCVSEDMRLSTEAFEWLIGE 1056
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1057 IETRFQQAQCAPGEMVGALAAQSLG 1081
>gi|324120576|dbj|BAJ78679.1| RNA polymerase II largest subunit [Inocellia japonica]
Length = 1913
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KC+IVAGED LSKQANENATLLFQCLVRS LCTK VAE +RLSSEAFEWL+GE
Sbjct: 1006 GVRDLLAKCIIVAGEDHLSKQANENATLLFQCLVRSXLCTKCVAEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQCAPGEMVGALAAQSLG 1090
>gi|345487216|ref|XP_003425653.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Nasonia vitripennis]
Length = 1907
Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LLE+C+IVAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1003 GVKDLLERCIIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1063 IETRFQQAQCSPGEMVGALAAQSLG 1087
>gi|324120528|dbj|BAJ78655.1| RNA polymerase II largest subunit [Phraortes illepidus]
Length = 1563
Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV LL+KCVIVAGED LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 984 GVNNLLKKCVIVAGEDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1043
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1044 IETRFQQAQCAPGEMVGALAAQSLG 1068
>gi|324120548|dbj|BAJ78665.1| RNA polymerase II largest subunit [Zorotypus sp. 154-1]
Length = 1862
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KCVIVAGED LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWLVGE
Sbjct: 1004 GVNDLLKKCVIVAGEDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRFQQAQC+PGEMVGALAAQSLG
Sbjct: 1064 IENRFQQAQCSPGEMVGALAAQSLG 1088
>gi|194245539|gb|ACF35379.1| RNA polymerase II large subunit [Dineutus sublineatus]
Length = 562
Score = 161 bits (407), Expect = 5e-38, Method: Composition-based stats.
Identities = 79/103 (76%), Positives = 89/103 (86%), Gaps = 3/103 (2%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N AQ S R+I GVR+LL+KCVIVAG+D+LSKQANENATLLFQCLVR+TLCTK
Sbjct: 459 NKRAQTDLSPLRVIQ---GVRDLLQKCVIVAGDDRLSKQANENATLLFQCLVRATLCTKC 515
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V+E +RLS+EAFEWL+GEIE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 516 VSEEFRLSTEAFEWLIGEIETRFQQAQCAPGEMVGALAAQSLG 558
>gi|324120556|dbj|BAJ78669.1| RNA polymerase II largest subunit [Thrips palmi]
Length = 1708
Score = 160 bits (406), Expect = 7e-38, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL+KCVIVAGED+LSK ANENATLLFQCLVRSTLCTK V E +RLSSEAFEWL+GE
Sbjct: 986 GVQELLQKCVIVAGEDRLSKMANENATLLFQCLVRSTLCTKCVGEEFRLSSEAFEWLIGE 1045
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1046 IETRFQQAQCSPGEMVGALAAQSLG 1070
>gi|328722767|ref|XP_001943949.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1958
Score = 160 bits (406), Expect = 8e-38, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 83/85 (97%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KCVIVAGED+LSK+AN+NATLLFQCLVRSTLCTKLV+EN+RLSSEAFEWLVGE
Sbjct: 1005 GVKKLLDKCVIVAGEDELSKKANKNATLLFQCLVRSTLCTKLVSENFRLSSEAFEWLVGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRF+QAQ PGEMVGALAAQSLG
Sbjct: 1065 IENRFKQAQAQPGEMVGALAAQSLG 1089
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats.
Identities = 75/85 (88%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED LSKQANENATLLFQCL+RSTLCTK V+EN RLSSEAFEWL+GE
Sbjct: 1007 GVRDLLQKCVIVAGEDPLSKQANENATLLFQCLIRSTLCTKGVSENMRLSSEAFEWLIGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 1067 IETRFQQAQVAPGEMVGALAAQSLG 1091
>gi|324120558|dbj|BAJ78670.1| RNA polymerase II largest subunit [Gynaikothrips ficorum]
Length = 1687
Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LLEKCVIVAG+D LSK ANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1006 GVKDLLEKCVIVAGDDHLSKMANENATLLFQCLVRSTLCTKSVSEEFRLSTEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQCAPGEMVGALAAQSLG 1090
>gi|324120586|dbj|BAJ78684.1| RNA polymerase II largest subunit [Papilio polytes]
Length = 1518
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KCVIVAGED+LSKQANENATLLFQCLVRSTLCTK V+E YRLSSEAFEWL+GE
Sbjct: 997 GVKDLLKKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKFVSEEYRLSSEAFEWLIGE 1056
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1057 IETRFQQAQVNPGEMVGALAAQSLG 1081
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 159 bits (403), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KC+IVAG D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1005 GVRDLLQKCIIVAGNDRLSKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQCNPGEMVGALAAQSLG 1089
>gi|324120544|dbj|BAJ78663.1| RNA polymerase II largest subunit [Euborellia plebeja]
Length = 1812
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ++L KCVIVAGED LSKQANENATLLFQCLVRSTLCT+LV+E +RLSSEAFEWL+GE
Sbjct: 1005 GVSDMLRKCVIVAGEDHLSKQANENATLLFQCLVRSTLCTRLVSEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+QAQC+PGEMVGALAAQSLG
Sbjct: 1065 IETRFRQAQCSPGEMVGALAAQSLG 1089
>gi|324120522|dbj|BAJ78652.1| RNA polymerase II largest subunit [Mnais pruinosa pruinosa]
Length = 1557
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KCVIVAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 1009 GVQDLLTKCVIVAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1069 IETRFQQAQCQPGEMVGALAAQSLG 1093
>gi|324120520|dbj|BAJ78651.1| RNA polymerase II largest subunit [Epiophlebia superstes]
Length = 1922
Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KCVIVAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 988 GVQDLLTKCVIVAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGE 1047
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1048 IETRFQQAQCQPGEMVGALAAQSLG 1072
>gi|324120562|dbj|BAJ78672.1| RNA polymerase II largest subunit [Anacanthocoris striicornis]
Length = 1743
Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats.
Identities = 77/95 (81%), Positives = 83/95 (87%), Gaps = 3/95 (3%)
Query: 15 SARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLS 74
S ++IG GVRELLEKC+IVAG D LSKQANENATLLFQCLVRSTLCTKLV+E +RLS
Sbjct: 998 SPVKVIG---GVRELLEKCIIVAGNDHLSKQANENATLLFQCLVRSTLCTKLVSEKFRLS 1054
Query: 75 SEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
S AFEWLVGEIE RF+QAQ PGEMVGALAAQSLG
Sbjct: 1055 SAAFEWLVGEIETRFKQAQAQPGEMVGALAAQSLG 1089
>gi|324120550|dbj|BAJ78666.1| RNA polymerase II largest subunit [Tenodera aridifolia]
Length = 1844
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1006 GVTDLLKKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQCSPGEMVGALAAQSLG 1090
>gi|324120536|dbj|BAJ78659.1| RNA polymerase II largest subunit [Nomadacris japonica]
Length = 1659
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KCVIVAGED LSKQANENATLLFQCLVRS LCTK V+E YRLS+EAFEWL+GE
Sbjct: 1006 GVNDLLKKCVIVAGEDHLSKQANENATLLFQCLVRSILCTKSVSEEYRLSTEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQCSPGEMVGALAAQSLG 1090
>gi|324120546|dbj|BAJ78664.1| RNA polymerase II largest subunit [Forficula hiromasai]
Length = 1744
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV E+L+KCVIVAGED LSKQANENATLLFQCLVRSTLC++LV+E +RLSSEAFEWL+GE
Sbjct: 1006 GVNEMLKKCVIVAGEDYLSKQANENATLLFQCLVRSTLCSRLVSEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+QAQC+PGEMVGALAAQSLG
Sbjct: 1066 IETRFRQAQCSPGEMVGALAAQSLG 1090
>gi|270010112|gb|EFA06560.1| hypothetical protein TcasGA2_TC009471 [Tribolium castaneum]
Length = 1899
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL KCVIVAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1003 GVRELLNKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1063 IETRFQQAQVNPGEMVGALAAQSLG 1087
>gi|91085731|ref|XP_973470.1| PREDICTED: similar to GA13798-PA [Tribolium castaneum]
Length = 2007
Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL KCVIVAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1008 GVRELLNKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1068 IETRFQQAQVNPGEMVGALAAQSLG 1092
>gi|324120530|dbj|BAJ78656.1| RNA polymerase II largest subunit [Aposthonia japonica]
Length = 1697
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KCVIV GED+LSKQANENATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 983 GVSDLLKKCVIVDGEDRLSKQANENATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGE 1042
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1043 IETRFQQAQCNPGEMVGALAAQSLG 1067
>gi|324120580|dbj|BAJ78681.1| RNA polymerase II largest subunit [Stichotrema asahinai]
Length = 1696
Score = 158 bits (400), Expect = 4e-37, Method: Composition-based stats.
Identities = 74/85 (87%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LLEKC+IVAG D+LSKQANENATLLFQCLVRSTLCTK V E+YRLSSEAFEWL+GE
Sbjct: 1001 GVRGLLEKCIIVAGNDRLSKQANENATLLFQCLVRSTLCTKSVTEDYRLSSEAFEWLIGE 1060
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1061 IETRFQQAQVSPGEMVGALAAQSLG 1085
>gi|324120572|dbj|BAJ78677.1| RNA polymerase II largest subunit [Vespa analis insularis]
Length = 1708
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LLEKC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKDLLEKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|119112579|ref|XP_317690.3| AGAP007810-PA [Anopheles gambiae str. PEST]
gi|116123421|gb|EAA12308.3| AGAP007810-PA [Anopheles gambiae str. PEST]
Length = 1878
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL++CVIVAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GE
Sbjct: 1002 GVRDLLQRCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1062 IETRFQQAQCNPGEMVGALAAQSLG 1086
>gi|357628227|gb|EHJ77617.1| largest subunit of the RNA polymerase II complex [Danaus plexippus]
Length = 1895
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KCVIVAGED+LSKQANENATLLFQCLVRST CTK V+E+YRLSSEAFEWL+GE
Sbjct: 1002 GVKDLLKKCVIVAGEDRLSKQANENATLLFQCLVRSTFCTKYVSEDYRLSSEAFEWLIGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1062 IETRFQQAQVNPGEMVGALAAQSLG 1086
>gi|403182441|gb|EJY57389.1| AAEL017363-PA [Aedes aegypti]
Length = 1887
Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIVAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GE
Sbjct: 1002 GVRDLLTKCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1062 IETRFQQAQCNPGEMVGALAAQSLG 1086
>gi|324120566|dbj|BAJ78674.1| RNA polymerase II largest subunit [Uroleucon nigrotuberculatum]
Length = 1862
Score = 158 bits (399), Expect = 5e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL+KCVIVAGED+LS++AN+NATLLFQCLVRSTLCTKLV+E +RLSSEAFEWL+GE
Sbjct: 1005 GVKELLDKCVIVAGEDELSQKANKNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRF+QAQ PGEMVGALAAQSLG
Sbjct: 1065 IENRFKQAQAQPGEMVGALAAQSLG 1089
>gi|324120584|dbj|BAJ78683.1| RNA polymerase II largest subunit [Lucidina biplagiata]
Length = 1685
Score = 157 bits (398), Expect = 6e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1001 GVRELLQKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 1060
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1061 IETRFQQAQANPGEMVGALAAQSLG 1085
>gi|332023552|gb|EGI63788.1| DNA-directed RNA polymerase II subunit RPB1 [Acromyrmex echinatior]
Length = 1906
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLEKC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1005 GVKNLLEKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVSPGEMVGALAAQSLG 1089
>gi|322801476|gb|EFZ22137.1| hypothetical protein SINV_09846 [Solenopsis invicta]
Length = 1905
Score = 157 bits (398), Expect = 7e-37, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLEKC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKNLLEKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|194245543|gb|ACF35381.1| RNA polymerase II large subunit [Amphizoa lecontei]
Length = 562
Score = 157 bits (397), Expect = 7e-37, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KC+IVAG+D+LS+QANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRQLLQKCIIVAGDDRLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQCAPGEMVGALAAQSLG 558
>gi|194245549|gb|ACF35384.1| RNA polymerase II large subunit [Sirdenus grayii]
Length = 227
Score = 157 bits (397), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 74/85 (87%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKYVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQCAPGEMVGALAAQSLG 223
>gi|324120508|dbj|BAJ78645.1| RNA polymerase II largest subunit [Lepidocampa weberi]
Length = 1558
Score = 157 bits (396), Expect = 9e-37, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L++KCVIVAGED+LSKQANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 1005 GVQDLIKKCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVQPGEMVGALAAQSLG 1089
>gi|383857287|ref|XP_003704136.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Megachile rotundata]
Length = 1904
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|380029407|ref|XP_003698365.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Apis florea]
Length = 1893
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|340722779|ref|XP_003399779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
terrestris]
gi|350424170|ref|XP_003493710.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Bombus
impatiens]
Length = 1902
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|328793442|ref|XP_623281.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Apis mellifera]
Length = 1883
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1004 GVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQVSPGEMVGALAAQSLG 1088
>gi|307181433|gb|EFN69028.1| DNA-directed RNA polymerase II subunit RPB1 [Camponotus floridanus]
Length = 1906
Score = 157 bits (396), Expect = 1e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1005 GVKDLLDKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVSPGEMVGALAAQSLG 1089
>gi|194245564|gb|ACF35392.1| RNA polymerase II large subunit [Bembidion inaequale]
Length = 553
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 465 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 524
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 525 IETRFQQAQSAPGEMVGALAAQSLG 549
>gi|194245557|gb|ACF35388.1| RNA polymerase II large subunit [Bembidion mandibulare]
Length = 562
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQSAPGEMVGALAAQSLG 558
>gi|194245551|gb|ACF35385.1| RNA polymerase II large subunit [Bembidion transversale]
gi|194245553|gb|ACF35386.1| RNA polymerase II large subunit [Bembidion plagiatum]
Length = 562
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQSAPGEMVGALAAQSLG 558
>gi|194245555|gb|ACF35387.1| RNA polymerase II large subunit [Bembidion umbratum]
gi|194245559|gb|ACF35389.1| RNA polymerase II large subunit [Bembidion rapidum]
Length = 562
Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQSAPGEMVGALAAQSLG 558
>gi|324120514|dbj|BAJ78648.1| RNA polymerase II largest subunit [Nipponatelura sp. 66-1]
Length = 1718
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL+KC+IVAGED LSKQAN+NATLLFQCLVRSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQELLKKCIIVAGEDHLSKQANKNATLLFQCLVRSTLCTKCVAEEFRLSAEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQVQPGEMVGALAAQSLG 1069
>gi|324120538|dbj|BAJ78660.1| RNA polymerase II largest subunit [Euconocephalus varius]
Length = 1640
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KCVIVAG+D LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1006 GVSDLLKKCVIVAGDDHLSVQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1066 IEARFQQAQCSPGEMVGALAAQSLG 1090
>gi|193700005|ref|XP_001943054.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Acyrthosiphon pisum]
Length = 1862
Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL+KCVIVAG D+LSK+AN NATLLFQCLVRSTLCTKLV+E +RLSSEAFEWL+GE
Sbjct: 1005 GVKELLDKCVIVAGGDELSKKANHNATLLFQCLVRSTLCTKLVSERFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRF+QAQ PGEMVGALAAQSLG
Sbjct: 1065 IENRFKQAQAQPGEMVGALAAQSLG 1089
>gi|324120534|dbj|BAJ78658.1| RNA polymerase II largest subunit [Karoophasma biedouwense]
Length = 1907
Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LS+QAN NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1006 GVSDLLKKCIIVAGDDHLSRQANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC+PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQCSPGEMVGALAAQSLG 1090
>gi|194245534|gb|ACF35376.1| RNA polymerase II large subunit [Scaphinotus petersi]
Length = 369
Score = 155 bits (392), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 82/85 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAG+D+LS+QANENATLLFQCLVR+TLCTK V+E +RLSSEAFEWL+GE
Sbjct: 281 GVRDLLQKCVIVAGKDRLSEQANENATLLFQCLVRATLCTKCVSEEFRLSSEAFEWLIGE 340
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 341 IETRFQQAQCAPGEMVGALAAQSLG 365
>gi|324120554|dbj|BAJ78668.1| RNA polymerase II largest subunit [Reticulitermes speratus]
Length = 1732
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1005 GVSDLLKKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVSPGEMVGALAAQSLG 1089
>gi|194245532|gb|ACF35375.1| RNA polymerase II large subunit [Chauliognathus opacus]
Length = 629
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL+KC+IVAG+D+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 541 GVRELLKKCIIVAGDDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 600
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 601 IETRFQQAQANPGEMVGALAAQSLG 625
>gi|307198840|gb|EFN79616.1| DNA-directed RNA polymerase II subunit RPB1 [Harpegnathos saltator]
Length = 1906
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KC+IVAG+D+LSKQANENATLLF+CLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1005 GVKDLLDKCIIVAGDDRLSKQANENATLLFRCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVSPGEMVGALAAQSLG 1089
>gi|324120524|dbj|BAJ78653.1| RNA polymerase II largest subunit [Ephemera japonica]
Length = 1660
Score = 155 bits (391), Expect = 4e-36, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAGED+LS QANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGE
Sbjct: 1009 GVQNLLSKCIIVAGEDRLSTQANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1069 IETRFQQAQCQPGEMVGALAAQSLG 1093
>gi|324120516|dbj|BAJ78649.1| RNA polymerase II largest subunit [Thermobia domestica]
Length = 1699
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KCVIVAG+D LSKQANENATLLFQCLVR+TLCTK V+++ RLS+EAFEWL+GE
Sbjct: 1006 GVKDLLRKCVIVAGDDHLSKQANENATLLFQCLVRATLCTKAVSDDSRLSAEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQAQC PGEMVGALAAQSLG
Sbjct: 1066 IESRFQQAQCQPGEMVGALAAQSLG 1090
>gi|194245541|gb|ACF35380.1| RNA polymerase II large subunit [Macrogyrus oblongus]
Length = 554
Score = 154 bits (390), Expect = 5e-36, Method: Composition-based stats.
Identities = 71/81 (87%), Positives = 78/81 (96%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL++CVIVAGED+LSKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRELLQRCVIVAGEDRLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE RFQQAQCAPGEMVGALAA
Sbjct: 534 IETRFQQAQCAPGEMVGALAA 554
>gi|312375441|gb|EFR22815.1| hypothetical protein AND_14157 [Anopheles darlingi]
Length = 1880
Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL++CVIVAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL++EAFEWL+GE
Sbjct: 1002 GVRDLLQRCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLNNEAFEWLIGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1062 IETRFQQAQVNPGEMVGALAAQSLG 1086
>gi|194245566|gb|ACF35393.1| RNA polymerase II large subunit [Bembidion integrum]
Length = 473
Score = 154 bits (389), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 385 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 444
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 445 IETRFQQAQSAPGEMVGALAAQSLG 469
>gi|194245562|gb|ACF35391.1| RNA polymerase II large subunit [Bembidion inaequale]
Length = 453
Score = 154 bits (389), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 365 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 424
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 425 IETRFQQAQSAPGEMVGALAAQSLG 449
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 997 GVQELLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1056
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1057 IETRFQQAQANPGEMVGALAAQSLG 1081
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 154 bits (389), Expect = 7e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KCVIVAG D+LS QANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1003 GVKDLLQKCVIVAGNDRLSVQANENATLLFQCLVRSTLCTKFVSEEFRLSSEAFEWLIGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC GEMVGALAAQSLG
Sbjct: 1063 IETRFQQAQCNAGEMVGALAAQSLG 1087
>gi|324120542|dbj|BAJ78662.1| RNA polymerase II largest subunit [Oyamia lugubris]
Length = 1742
Score = 154 bits (388), Expect = 9e-36, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV LL+KCVIVAGED LSK ANENATLLFQCL+RSTLC+K V+E++RLSSEAFEWL+GE
Sbjct: 1007 GVTNLLKKCVIVAGEDHLSKMANENATLLFQCLIRSTLCSKCVSEDFRLSSEAFEWLIGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 1067 IETRFQQAQVAPGEMVGALAAQSLG 1091
>gi|324120540|dbj|BAJ78661.1| RNA polymerase II largest subunit [Teleogryllus emma]
Length = 1909
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 79/85 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LSKQAN+NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1007 GVNDLLKKCIIVAGDDHLSKQANKNATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1067 IETRFQQAQVSPGEMVGALAAQSLG 1091
>gi|194245537|gb|ACF35378.1| RNA polymerase II large subunit [Pterostichus melanarius]
Length = 227
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSK ANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLKKCVIVAGEDRLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQCAPGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQCAPGEMVGALAAQSLG 223
>gi|149347775|gb|ABR23784.1| RNA polymerase II largest subunit, partial [Bembidion chalceum]
gi|149347821|gb|ABR23807.1| RNA polymerase II largest subunit, partial [Bembidion rufotinctum]
Length = 227
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQSAPGEMVGALAAQSLG 223
>gi|149347721|gb|ABR23757.1| RNA polymerase II largest subunit, partial [Bembidion americanum]
gi|149347747|gb|ABR23770.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
Length = 227
Score = 153 bits (387), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQSAPGEMVGALAAQSLG 223
>gi|194245547|gb|ACF35383.1| RNA polymerase II large subunit [Asaphidion yukonense]
Length = 562
Score = 153 bits (387), Expect = 1e-35, Method: Composition-based stats.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSK ANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRDLLQKCVIVAGEDRLSKLANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQSAPGEMVGALAAQSLG 558
>gi|149347727|gb|ABR23760.1| RNA polymerase II largest subunit, partial [Bembidion bowditchii]
Length = 225
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 137 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 196
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 197 IETRFQQAQSAPGEMVGALAAQSLG 221
>gi|149347735|gb|ABR23764.1| RNA polymerase II largest subunit, partial [Bembidion lapponicum]
gi|149347779|gb|ABR23786.1| RNA polymerase II largest subunit, partial [Bembidion chalceum]
gi|149347819|gb|ABR23806.1| RNA polymerase II largest subunit, partial [Bembidion rufotinctum]
Length = 226
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 138 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 197
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 198 IETRFQQAQSAPGEMVGALAAQSLG 222
>gi|149347719|gb|ABR23756.1| RNA polymerase II largest subunit, partial [Bembidion concolor]
gi|149347729|gb|ABR23761.1| RNA polymerase II largest subunit, partial [Bembidion cheyennense]
gi|149347731|gb|ABR23762.1| RNA polymerase II largest subunit, partial [Bembidion confusum]
gi|149347741|gb|ABR23767.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
gi|149347743|gb|ABR23768.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
gi|149347745|gb|ABR23769.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
gi|149347749|gb|ABR23771.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
gi|149347751|gb|ABR23772.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347753|gb|ABR23773.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347755|gb|ABR23774.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347757|gb|ABR23775.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347759|gb|ABR23776.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347761|gb|ABR23777.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347763|gb|ABR23778.1| RNA polymerase II largest subunit, partial [Bembidion arenobilis]
gi|149347765|gb|ABR23779.1| RNA polymerase II largest subunit, partial [Bembidion bellorum]
gi|149347767|gb|ABR23780.1| RNA polymerase II largest subunit, partial [Bembidion bellorum]
gi|149347769|gb|ABR23781.1| RNA polymerase II largest subunit, partial [Bembidion bellorum]
gi|149347771|gb|ABR23782.1| RNA polymerase II largest subunit, partial [Bembidion bellorum]
gi|149347773|gb|ABR23783.1| RNA polymerase II largest subunit, partial [Bembidion bellorum]
gi|149347777|gb|ABR23785.1| RNA polymerase II largest subunit, partial [Bembidion chalceum]
gi|149347781|gb|ABR23787.1| RNA polymerase II largest subunit, partial [Bembidion chalceum]
gi|149347783|gb|ABR23788.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347785|gb|ABR23789.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347787|gb|ABR23790.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347789|gb|ABR23791.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347791|gb|ABR23792.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347793|gb|ABR23793.1| RNA polymerase II largest subunit, partial [Bembidion honestum]
gi|149347795|gb|ABR23794.1| RNA polymerase II largest subunit, partial [Bembidion integrum]
gi|149347797|gb|ABR23795.1| RNA polymerase II largest subunit, partial [Bembidion integrum]
gi|149347799|gb|ABR23796.1| RNA polymerase II largest subunit, partial [Bembidion integrum]
gi|149347801|gb|ABR23797.1| RNA polymerase II largest subunit, partial [Bembidion integrum]
gi|149347803|gb|ABR23798.1| RNA polymerase II largest subunit, partial [Bembidion louisella]
gi|149347805|gb|ABR23799.1| RNA polymerase II largest subunit, partial [Bembidion louisella]
gi|149347807|gb|ABR23800.1| RNA polymerase II largest subunit, partial [Bembidion louisella]
gi|149347809|gb|ABR23801.1| RNA polymerase II largest subunit, partial [Bembidion louisella]
gi|149347811|gb|ABR23802.1| RNA polymerase II largest subunit, partial [Bembidion rothfelsi]
gi|149347813|gb|ABR23803.1| RNA polymerase II largest subunit, partial [Bembidion rothfelsi]
gi|149347815|gb|ABR23804.1| RNA polymerase II largest subunit, partial [Bembidion rothfelsi]
gi|149347817|gb|ABR23805.1| RNA polymerase II largest subunit, partial [Bembidion rothfelsi]
gi|149347823|gb|ABR23808.1| RNA polymerase II largest subunit, partial [Bembidion rufotinctum]
gi|149347825|gb|ABR23809.1| RNA polymerase II largest subunit, partial [Bembidion rufotinctum]
Length = 227
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQSAPGEMVGALAAQSLG 223
>gi|149347717|gb|ABR23755.1| RNA polymerase II largest subunit, partial [Bembidion californicum]
Length = 227
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQSAPGEMVGALAAQSLG 223
>gi|149347739|gb|ABR23766.1| RNA polymerase II largest subunit, partial [Bembidion antiquum]
Length = 222
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 134 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 193
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 194 IETRFQQAQSAPGEMVGALAAQSLG 218
>gi|149347733|gb|ABR23763.1| RNA polymerase II largest subunit, partial [Bembidion coxendix]
Length = 225
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/85 (85%), Positives = 81/85 (95%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 137 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 196
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 197 IETRFQQAQSAPGEMVGALAAQSLG 221
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KC+IVAGED+LS+QANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGE
Sbjct: 988 GVQKLLSKCIIVAGEDRLSRQANENATLLFQCLVRSILCTKNVADKYRLSTEAFEWLVGE 1047
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1048 IETRFQQAQAQPGEMVGALAAQSLG 1072
>gi|324120518|dbj|BAJ78650.1| RNA polymerase II largest subunit [Isolepisma japonica]
Length = 1775
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL+KCVIVAGED LS+QANENATLLFQCLVRSTLCTK+++++ RLS+EAFEWL+GE
Sbjct: 1006 GVKDLLQKCVIVAGEDHLSRQANENATLLFQCLVRSTLCTKVISDDSRLSAEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1066 IEARFQQAQVQPGEMVGALAAQSLG 1090
>gi|324120506|dbj|BAJ78644.1| RNA polymerase II largest subunit [Metriocampa sp. 44]
Length = 1738
Score = 152 bits (385), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL++KCVIV GED++SK ANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 985 GVQELIKKCVIVQGEDRMSKLANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQVQPGEMVGALAAQSLG 1069
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LLE+CVIV G D++SKQANENATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVRGLLERCVIVTGNDRISKQANENATLLFQCLVRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|321464303|gb|EFX75312.1| hypothetical protein DAPPUDRAFT_306846 [Daphnia pulex]
Length = 1895
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 71/85 (83%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+GE
Sbjct: 1006 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQAQPGEMVGALAAQSLG 1090
>gi|324120552|dbj|BAJ78667.1| RNA polymerase II largest subunit [Blattella nipponica]
Length = 1598
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL KC+IVAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSS AFEWL+GE
Sbjct: 1006 GVSDLLRKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSVAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQVSPGEMVGALAAQSLG 1090
>gi|324120510|dbj|BAJ78646.1| RNA polymerase II largest subunit [Pedetontus unimaculatus]
Length = 1549
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 76/85 (89%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAGED LSK ANENATLLFQCLVR+TLCT+ VAE +RLSSEAFEWL+GE
Sbjct: 986 GVQNLLSKCIIVAGEDHLSKMANENATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGE 1045
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1046 IETRFQQAQVQPGEMVGALAAQSLG 1070
>gi|149347725|gb|ABR23759.1| RNA polymerase II largest subunit, partial [Bembidion bifossulatum]
Length = 227
Score = 151 bits (382), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQ NENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 139 GVRDLLQKCVIVAGEDRLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 198
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 199 IETRFQQAQSAPGEMVGALAAQSLG 223
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 1004 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 1004 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 1004 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 151 bits (382), Expect = 4e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 1004 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|149347737|gb|ABR23765.1| RNA polymerase II largest subunit, partial [Bembidion levettei]
Length = 226
Score = 151 bits (382), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQ NENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 138 GVRDLLQKCVIVAGEDRLSKQXNENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 197
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 198 IETRFQQAQSAPGEMVGALAAQSLG 222
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|308229956|gb|ADO24385.1| RNA polymerase II large subunit, partial [Drosophila phalerata]
Length = 1849
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 997 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1056
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1057 IETRFQQAQANPGEMVGALAAQSLG 1081
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 985 GVQGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQANPGEMVGALAAQSLG 1069
>gi|19528357|gb|AAL90293.1| LD43558p [Drosophila melanogaster]
Length = 1429
Score = 151 bits (381), Expect = 5e-35, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 546 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 605
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 606 IETRFQQAQANPGEMVGALAAQSLG 630
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 926 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 986 IETRFQQAQANPGEMVGALAAQSLG 1010
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 150 bits (380), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|321468525|gb|EFX79509.1| hypothetical protein DAPPUDRAFT_319347 [Daphnia pulex]
Length = 1459
Score = 150 bits (380), Expect = 8e-35, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+
Sbjct: 985 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEEYRLSSEAFEWLIGK 1044
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1045 IETRFQQAQAQPGEMVGALAAQSLG 1069
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 150 bits (379), Expect = 9e-35, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLF+CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 997 GVKGLLERCVIVTGHDRISKQANENATLLFRCLIRSTLCTKYVAEEFRLSTEAFEWLIGE 1056
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1057 IETRFQQAQANPGEMVGALAAQSLG 1081
>gi|149347723|gb|ABR23758.1| RNA polymerase II largest subunit, partial [Bembidion balli]
Length = 220
Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/85 (84%), Positives = 80/85 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAGED+LSKQANENATLLFQCLVR+TLCTK V+E +RLS+EA EWL+GE
Sbjct: 132 GVRDLLQKCVIVAGEDRLSKQANENATLLFQCLVRATLCTKCVSEEFRLSTEAXEWLIGE 191
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ APGEMVGALAAQSLG
Sbjct: 192 IETRFQQAQSAPGEMVGALAAQSLG 216
>gi|321459276|gb|EFX70331.1| hypothetical protein DAPPUDRAFT_328199 [Daphnia pulex]
Length = 1457
Score = 150 bits (378), Expect = 1e-34, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+
Sbjct: 986 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEKYRLSSEAFEWLIGK 1045
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1046 IETRFQQAQAQPGEMVGALAAQSLG 1070
>gi|78183107|gb|ABB29549.1| putative RNA polymerase II 215 kD subunit [Drosophila simulans]
Length = 746
Score = 149 bits (377), Expect = 1e-34, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 146 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 205
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 206 IETRFQQAQANPGEMVGALAAQSLG 230
>gi|324120532|dbj|BAJ78657.1| RNA polymerase II largest subunit [Galloisiana yuasai]
Length = 1904
Score = 149 bits (377), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 75/85 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV LL KC+IVAGED LS+ AN NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 1006 GVTNLLRKCIIVAGEDHLSRSANANATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ +PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAQVSPGEMVGALAAQSLG 1090
>gi|324120570|dbj|BAJ78676.1| RNA polymerase II largest subunit [Neocolochelyna itoi]
Length = 1815
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LLEKC+IVAG+D LSK AN NATLLFQCLVRSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1005 GVKDLLEKCIIVAGKDDLSKLANTNATLLFQCLVRSTLCTKCVSEEFRLSTEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1065 IETRFQQAQVFPGEMVGALAAQSLG 1089
>gi|78183105|gb|ABB29548.1| putative RNA polymerase II 215 kD subunit [Drosophila orena]
Length = 750
Score = 149 bits (376), Expect = 2e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 146 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 205
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 206 IETRFQQAQANPGEMVGALAAQSLG 230
>gi|38232321|gb|AAR14996.1| RNA polymerase II largest subunit [Mesocyclops edax]
Length = 302
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 78/85 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LLEKCVIV GED+LSKQANENAT LFQCLVRSTLC+KLVAE +RLS EAFEWL+GE
Sbjct: 20 GVRDLLEKCVIVKGEDKLSKQANENATTLFQCLVRSTLCSKLVAEQFRLSEEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QAQ PGEMVGA+AAQS+G
Sbjct: 80 IESKFMQAQATPGEMVGAIAAQSIG 104
>gi|321450862|gb|EFX62718.1| hypothetical protein DAPPUDRAFT_67765 [Daphnia pulex]
Length = 1138
Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+
Sbjct: 980 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGK 1039
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1040 IETRFQQAQAQPGEMVGALAAQSLG 1064
>gi|78183109|gb|ABB29550.1| putative RNA polymerase II 215 kD subunit [Drosophila teissieri]
Length = 769
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 146 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 205
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 206 IETRFQQAQANPGEMVGALAAQSLG 230
>gi|78183111|gb|ABB29551.1| putative RNA polymerase II 215 kD subunit [Drosophila yakuba]
Length = 766
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 146 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 205
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 206 IETRFQQAQANPGEMVGALAAQSLG 230
>gi|194245545|gb|ACF35382.1| RNA polymerase II large subunit [Laccophilus pictus]
Length = 562
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL++C+IVAG D+LS AN+NATLLFQCLVRSTLCTK V+E YRLS+EAFEWL+GE
Sbjct: 474 GVRELLQRCIIVAGTDRLSTLANDNATLLFQCLVRSTLCTKYVSEEYRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 534 IETRFQQAQANPGEMVGALAAQSLG 558
>gi|78183103|gb|ABB29547.1| putative RNA polymerase II 215 kD subunit [Drosophila erecta]
Length = 760
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 146 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 205
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 206 IETRFQQAQANPGEMVGALAAQSLG 230
>gi|321468698|gb|EFX79682.1| hypothetical protein DAPPUDRAFT_52186 [Daphnia pulex]
Length = 1047
Score = 149 bits (375), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+
Sbjct: 812 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRIAEEYRLSSEAFEWLIGK 871
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 872 IETRFQQAQAQPGEMVGALAAQSLG 896
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 67/85 (78%), Positives = 76/85 (89%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL +CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1004 GVSDLLNRCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>gi|321468694|gb|EFX79678.1| hypothetical protein DAPPUDRAFT_304478 [Daphnia pulex]
Length = 1441
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 76/85 (89%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+GE
Sbjct: 967 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGE 1026
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
I RFQQAQ PGEMVGALAAQSLG
Sbjct: 1027 IATRFQQAQAQPGEMVGALAAQSLG 1051
>gi|295873272|gb|ADG48718.1| CG1554 [Drosophila melanogaster]
gi|295873274|gb|ADG48719.1| CG1554 [Drosophila melanogaster]
gi|295873276|gb|ADG48720.1| CG1554 [Drosophila melanogaster]
gi|295873278|gb|ADG48721.1| CG1554 [Drosophila melanogaster]
gi|295873280|gb|ADG48722.1| CG1554 [Drosophila melanogaster]
gi|295873282|gb|ADG48723.1| CG1554 [Drosophila melanogaster]
gi|295873284|gb|ADG48724.1| CG1554 [Drosophila melanogaster]
gi|295873286|gb|ADG48725.1| CG1554 [Drosophila melanogaster]
gi|295873288|gb|ADG48726.1| CG1554 [Drosophila melanogaster]
gi|295873290|gb|ADG48727.1| CG1554 [Drosophila melanogaster]
gi|295873292|gb|ADG48728.1| CG1554 [Drosophila melanogaster]
gi|295873294|gb|ADG48729.1| CG1554 [Drosophila melanogaster]
gi|295873296|gb|ADG48730.1| CG1554 [Drosophila melanogaster]
gi|295873298|gb|ADG48731.1| CG1554 [Drosophila melanogaster]
gi|295873300|gb|ADG48732.1| CG1554 [Drosophila melanogaster]
gi|295873302|gb|ADG48733.1| CG1554 [Drosophila melanogaster]
gi|295873304|gb|ADG48734.1| CG1554 [Drosophila melanogaster]
gi|295873306|gb|ADG48735.1| CG1554 [Drosophila melanogaster]
gi|295873308|gb|ADG48736.1| CG1554 [Drosophila melanogaster]
gi|295873310|gb|ADG48737.1| CG1554 [Drosophila melanogaster]
gi|295873312|gb|ADG48738.1| CG1554 [Drosophila melanogaster]
gi|295873314|gb|ADG48739.1| CG1554 [Drosophila melanogaster]
Length = 267
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 71 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 130
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 131 IETRFQQAQANPGEMVGALAAQSLG 155
>gi|520503|gb|AAC83397.1| RNA polymerase II, largest subunit, partial [Artemia salina]
Length = 1341
Score = 148 bits (374), Expect = 3e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+ CVIV GED+LSKQANENATLLFQCLVRSTLCTK +A+ YRL++EAFEWL+GE
Sbjct: 924 GVRDLLKNCVIVNGEDKLSKQANENATLLFQCLVRSTLCTKRLADEYRLNTEAFEWLIGE 983
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ AQ PGEMVGA+AAQSLG
Sbjct: 984 IETRFQLAQAVPGEMVGAIAAQSLG 1008
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 148 bits (374), Expect = 4e-34, Method: Composition-based stats.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KCVIVAG D+LSKQANENATLLFQCL+RSTLCTK V+E +RLS++AF L+GE
Sbjct: 1003 GVKDLLTKCVIVAGNDRLSKQANENATLLFQCLIRSTLCTKYVSEEFRLSTDAFNLLIGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQC PGEMVGALAAQSLG
Sbjct: 1063 IETRFQQAQCNPGEMVGALAAQSLG 1087
>gi|159150496|gb|ABW91756.1| RNA polymerase II 215 kD subunit [Drosophila simulans]
gi|159150498|gb|ABW91757.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150500|gb|ABW91758.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150502|gb|ABW91759.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150504|gb|ABW91760.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150506|gb|ABW91761.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150508|gb|ABW91762.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150510|gb|ABW91763.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150512|gb|ABW91764.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150514|gb|ABW91765.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150516|gb|ABW91766.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150518|gb|ABW91767.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|159150520|gb|ABW91768.1| RNA polymerase II 215 kD subunit [Drosophila melanogaster]
gi|295873136|gb|ADG48650.1| CG1554 [Drosophila simulans]
gi|295873138|gb|ADG48651.1| CG1554 [Drosophila simulans]
gi|295873140|gb|ADG48652.1| CG1554 [Drosophila simulans]
gi|295873142|gb|ADG48653.1| CG1554 [Drosophila simulans]
gi|295873144|gb|ADG48654.1| CG1554 [Drosophila simulans]
gi|295873146|gb|ADG48655.1| CG1554 [Drosophila simulans]
gi|295873148|gb|ADG48656.1| CG1554 [Drosophila simulans]
gi|295873150|gb|ADG48657.1| CG1554 [Drosophila simulans]
gi|295873152|gb|ADG48658.1| CG1554 [Drosophila simulans]
gi|295873154|gb|ADG48659.1| CG1554 [Drosophila simulans]
gi|295873156|gb|ADG48660.1| CG1554 [Drosophila simulans]
gi|295873158|gb|ADG48661.1| CG1554 [Drosophila simulans]
gi|295873160|gb|ADG48662.1| CG1554 [Drosophila simulans]
gi|295873162|gb|ADG48663.1| CG1554 [Drosophila simulans]
gi|295873164|gb|ADG48664.1| CG1554 [Drosophila simulans]
gi|295873166|gb|ADG48665.1| CG1554 [Drosophila simulans]
gi|295873168|gb|ADG48666.1| CG1554 [Drosophila simulans]
gi|295873170|gb|ADG48667.1| CG1554 [Drosophila simulans]
gi|295873172|gb|ADG48668.1| CG1554 [Drosophila simulans]
gi|295873174|gb|ADG48669.1| CG1554 [Drosophila simulans]
gi|295873176|gb|ADG48670.1| CG1554 [Drosophila simulans]
gi|295873178|gb|ADG48671.1| CG1554 [Drosophila simulans]
gi|295873180|gb|ADG48672.1| CG1554 [Drosophila simulans]
gi|295873182|gb|ADG48673.1| CG1554 [Drosophila simulans]
gi|295873316|gb|ADG48740.1| CG1554 [Drosophila melanogaster]
gi|295873318|gb|ADG48741.1| CG1554 [Drosophila melanogaster]
gi|295873320|gb|ADG48742.1| CG1554 [Drosophila melanogaster]
gi|295873322|gb|ADG48743.1| CG1554 [Drosophila melanogaster]
gi|295873324|gb|ADG48744.1| CG1554 [Drosophila melanogaster]
gi|295873326|gb|ADG48745.1| CG1554 [Drosophila melanogaster]
gi|295873328|gb|ADG48746.1| CG1554 [Drosophila melanogaster]
gi|295873330|gb|ADG48747.1| CG1554 [Drosophila melanogaster]
gi|295873332|gb|ADG48748.1| CG1554 [Drosophila melanogaster]
gi|295873334|gb|ADG48749.1| CG1554 [Drosophila melanogaster]
gi|295873336|gb|ADG48750.1| CG1554 [Drosophila melanogaster]
gi|295873338|gb|ADG48751.1| CG1554 [Drosophila melanogaster]
Length = 247
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 61 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 120
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 121 IETRFQQAQANPGEMVGALAAQSLG 145
>gi|321447689|gb|EFX61131.1| hypothetical protein DAPPUDRAFT_70163 [Daphnia pulex]
Length = 860
Score = 148 bits (373), Expect = 5e-34, Method: Composition-based stats.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KCVIV GED+LS QAN+NATLLFQCLVRSTLC+K +AE YRLSSEAFEWL+G+
Sbjct: 702 GVRDLLAKCVIVVGEDKLSIQANQNATLLFQCLVRSTLCSKRLAEEYRLSSEAFEWLIGK 761
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 762 IETRFQQAQAQPGEMVGALAAQSLG 786
>gi|85682951|gb|ABC73451.1| CG1554 [Drosophila miranda]
Length = 335
Score = 148 bits (373), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 1 GVKTLLERCVIVTGADRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 60
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 61 IETRFQQAQANPGEMVGALAAQSLG 85
>gi|295873184|gb|ADG48674.1| CG1554 [Drosophila yakuba]
gi|295873186|gb|ADG48675.1| CG1554 [Drosophila yakuba]
gi|295873188|gb|ADG48676.1| CG1554 [Drosophila yakuba]
gi|295873190|gb|ADG48677.1| CG1554 [Drosophila yakuba]
gi|295873192|gb|ADG48678.1| CG1554 [Drosophila yakuba]
gi|295873194|gb|ADG48679.1| CG1554 [Drosophila yakuba]
gi|295873196|gb|ADG48680.1| CG1554 [Drosophila yakuba]
gi|295873198|gb|ADG48681.1| CG1554 [Drosophila yakuba]
gi|295873200|gb|ADG48682.1| CG1554 [Drosophila yakuba]
gi|295873202|gb|ADG48683.1| CG1554 [Drosophila yakuba]
gi|295873204|gb|ADG48684.1| CG1554 [Drosophila yakuba]
gi|295873206|gb|ADG48685.1| CG1554 [Drosophila yakuba]
gi|295873208|gb|ADG48686.1| CG1554 [Drosophila yakuba]
gi|295873210|gb|ADG48687.1| CG1554 [Drosophila yakuba]
gi|295873212|gb|ADG48688.1| CG1554 [Drosophila yakuba]
gi|295873214|gb|ADG48689.1| CG1554 [Drosophila santomea]
gi|295873216|gb|ADG48690.1| CG1554 [Drosophila santomea]
gi|295873218|gb|ADG48691.1| CG1554 [Drosophila santomea]
gi|295873220|gb|ADG48692.1| CG1554 [Drosophila santomea]
gi|295873222|gb|ADG48693.1| CG1554 [Drosophila santomea]
gi|295873224|gb|ADG48694.1| CG1554 [Drosophila santomea]
gi|295873226|gb|ADG48695.1| CG1554 [Drosophila santomea]
gi|295873228|gb|ADG48696.1| CG1554 [Drosophila santomea]
gi|295873230|gb|ADG48697.1| CG1554 [Drosophila santomea]
gi|295873232|gb|ADG48698.1| CG1554 [Drosophila santomea]
gi|295873234|gb|ADG48699.1| CG1554 [Drosophila santomea]
gi|295873236|gb|ADG48700.1| CG1554 [Drosophila santomea]
gi|295873238|gb|ADG48701.1| CG1554 [Drosophila santomea]
gi|295873240|gb|ADG48702.1| CG1554 [Drosophila santomea]
gi|295873242|gb|ADG48703.1| CG1554 [Drosophila santomea]
Length = 348
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GE
Sbjct: 7 GVKGLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGE 66
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 67 IETRFQQAQANPGEMVGALAAQSLG 91
>gi|38232291|gb|AAR14981.1| RNA polymerase II largest subunit [Limnadia lenticularis]
Length = 256
Score = 147 bits (372), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 76/85 (89%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KC+ V GED+LSKQANENATLLFQ LVR+TLCTK VAE YRLSSEAFEWL+GE
Sbjct: 20 GVRDLLQKCIAVPGEDKLSKQANENATLLFQTLVRATLCTKRVAEEYRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QAQ PGEMVGALAAQSLG
Sbjct: 80 IETRFLQAQAPPGEMVGALAAQSLG 104
>gi|13549462|gb|AAF26638.2|AF138988_1 RNA polymerase II largest subunit [Metajapyx subterraneus]
Length = 256
Score = 147 bits (371), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ELL KCVIVAG+D+LSK AN+NATLLFQCLVRSTLCT+ VA +RLSSEAFEWL+GE
Sbjct: 20 GVQELLRKCVIVAGDDRLSKMANDNATLLFQCLVRSTLCTRRVAXEFRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQAQ PGEMVGALAAQSLG
Sbjct: 80 VETRFQQAQVXPGEMVGALAAQSLG 104
>gi|324120512|dbj|BAJ78647.1| RNA polymerase II largest subunit [Petrobiellus takunagae]
Length = 1882
Score = 147 bits (370), Expect = 1e-33, Method: Composition-based stats.
Identities = 67/85 (78%), Positives = 75/85 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAG+D LS+ AN NATLLFQCLVR+TLCT+ VAE +RLSSEAFEWL+GE
Sbjct: 986 GVQNLLSKCIIVAGDDHLSRMANANATLLFQCLVRATLCTRRVAEEFRLSSEAFEWLIGE 1045
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1046 IETRFQQAQVQPGEMVGALAAQSLG 1070
>gi|194245528|gb|ACF35373.1| RNA polymerase II large subunit [Sialis sp. ALW-2008]
Length = 555
Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats.
Identities = 68/81 (83%), Positives = 74/81 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ELL +CVIVAG+D LS+QANENATLLF+CLVRSTLCTK VAE +RLS EAFEWL+GE
Sbjct: 475 GVSELLRRCVIVAGDDPLSRQANENATLLFRCLVRSTLCTKRVAEEFRLSHEAFEWLIGE 534
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE RFQQAQCAPGEMVGALAA
Sbjct: 535 IETRFQQAQCAPGEMVGALAA 555
>gi|31127034|gb|AAF26651.2|AF139001_1 RNA polymerase II largest subunit [Polyxenus fasciculatus]
Length = 751
Score = 140 bits (353), Expect = 9e-32, Method: Composition-based stats.
Identities = 66/85 (77%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K VIV GED LSKQAN+NATLL CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 663 GVRDLTKKLVIVVGEDALSKQANDNATLLINCLIRSTLCTKRVAEEFRLSAEAFEWLLGE 722
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ AQ PGEMVGALAAQSLG
Sbjct: 723 IETRFQHAQVQPGEMVGALAAQSLG 747
>gi|194245530|gb|ACF35374.1| RNA polymerase II large subunit [Tenomerga cinerea]
Length = 553
Score = 140 bits (353), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/80 (78%), Positives = 74/80 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KC+IVAG+D+LS+QANENATLLFQCLVR+TLCTK V+E +RLS+EAFEWL+GE
Sbjct: 474 GVRQLLQKCIIVAGDDRLSRQANENATLLFQCLVRATLCTKCVSEEFRLSTEAFEWLIGE 533
Query: 85 IENRFQQAQCAPGEMVGALA 104
IE RFQQA PGEMVGALA
Sbjct: 534 IETRFQQATMCPGEMVGALA 553
>gi|170062578|ref|XP_001866731.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
gi|167880465|gb|EDS43848.1| DNA-directed RNA polymerase II largest subunit [Culex
quinquefasciatus]
Length = 1874
Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats.
Identities = 63/76 (82%), Positives = 70/76 (92%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+KCVIVAG D+LSKQANENATLLFQCLVRSTLCTK VAE +RL +EAFEWL+GE
Sbjct: 1002 GVRDLLQKCVIVAGTDRLSKQANENATLLFQCLVRSTLCTKYVAEEFRLINEAFEWLIGE 1061
Query: 85 IENRFQQAQCAPGEMV 100
IE RFQQAQC PGEM+
Sbjct: 1062 IETRFQQAQCNPGEMM 1077
>gi|6716461|gb|AAF26622.1|AF138972_1 RNA polymerase II largest subunit [Semibalanus balanoides]
Length = 256
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL +CV+V GED+LSK AN NAT+LF CLVRSTLCT+ VAE YRLSSEAFEWL+GE
Sbjct: 20 GVRTLLSRCVVVRGEDRLSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
I+ RF QA PGEMVGALAAQSLG
Sbjct: 80 IDTRFHQAMVNPGEMVGALAAQSLG 104
>gi|38232381|gb|AAR15026.1| RNA polymerase II largest subunit [Thereuonema sp. JCR-2003]
Length = 108
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 74/85 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED++SKQANENATLLF LVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GARELTKKIIIVQGEDRISKQANENATLLFNALVRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQ+Q PGEMVGALAAQSLG
Sbjct: 80 IETRFQQSQVQPGEMVGALAAQSLG 104
>gi|38232237|gb|AAR14954.1| RNA polymerase II largest subunit [Armadillidium vulgare]
Length = 736
Score = 137 bits (345), Expect = 7e-31, Method: Composition-based stats.
Identities = 64/85 (75%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV E L KC+IV+GED++S QANENATLLF CLVRSTLCTK V+E YRL++EAF WL+GE
Sbjct: 472 GVNETLRKCMIVSGEDRISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGE 531
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QA PGEMVGALAAQSLG
Sbjct: 532 IETRFNQAIANPGEMVGALAAQSLG 556
>gi|6716503|gb|AAF26664.1|AF139014_1 RNA polymerase II largest subunit [Tanystylum orbiculare]
Length = 256
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/103 (66%), Positives = 81/103 (78%), Gaps = 3/103 (2%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GV +L++K VIV G+D+LS QANENATLLFQ L+RSTLC+K
Sbjct: 5 NKRAPTDLSPLRVIH---GVEDLVKKLVIVPGDDRLSLQANENATLLFQALLRSTLCSKK 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
VAE +RLS+EAF+WL+GEI+ RFQQAQ PGEMVGALAAQSLG
Sbjct: 62 VAEEFRLSTEAFDWLLGEIDTRFQQAQVMPGEMVGALAAQSLG 104
>gi|38232351|gb|AAR15011.1| RNA polymerase II largest subunit [Podura aquatica]
Length = 306
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 75/85 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC++V G+D +S++AN NATLLFQCLVRSTLC++ VAE +RL++EAFEWL+GE
Sbjct: 20 GVEDLLKKCIVVNGDDPMSQKANANATLLFQCLVRSTLCSRRVAEEFRLTTEAFEWLIGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 80 IETRFQQALVQPGEMVGALAAQSLG 104
>gi|13123076|gb|AAK12766.1| RNA polymerase II largest subunit [Stenochrus portoricensis]
Length = 256
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 74/85 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV GED+LS QAN+NATLLF+ L+RS LCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEDLVKKLIIVPGEDRLSIQANDNATLLFRALLRSVLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 80 IETRFQQAQVQPGEMVGALAAQSLG 104
>gi|6716459|gb|AAF26620.1|AF138970_1 RNA polymerase II largest subunit [Armadillidium vulgare]
Length = 433
Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats.
Identities = 64/85 (75%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV E L KC+IV+GED++S QANENATLLF CLVRSTLCTK V+E YRL++EAF WL+GE
Sbjct: 169 GVNETLRKCMIVSGEDRISVQANENATLLFHCLVRSTLCTKKVSEEYRLTTEAFNWLMGE 228
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QA PGEMVGALAAQSLG
Sbjct: 229 IETRFNQAIANPGEMVGALAAQSLG 253
>gi|520517|gb|AAA50229.1| RNA polymerase II, largest subunit, partial [Ilyanassa obsoleta]
Length = 1343
Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats.
Identities = 62/85 (72%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L ++ IV GED +SKQANENATLL +CL+RSTLC K VAE +RLS +AF WL+GE
Sbjct: 926 GVRDLCQRLTIVEGEDMISKQANENATLLMKCLIRSTLCAKRVAEEHRLSEDAFNWLLGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 986 IETRFQQAQAHPGEMVGALAAQSLG 1010
>gi|34597080|gb|AAQ77115.1| RNA polymerase II largest subunit [Lithobius forticatus]
Length = 108
Score = 134 bits (338), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED LSKQANENATLL CL+RSTLCTK +AE +RLS+EAFEWL+GE
Sbjct: 20 GCRELSKKLIIVPGEDPLSKQANENATLLINCLLRSTLCTKRMAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
I+ RFQQAQ PGEMVGALAAQSLG
Sbjct: 80 IDTRFQQAQVQPGEMVGALAAQSLG 104
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 134 bits (337), Expect = 6e-30, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L ++ ++VAG D+LS QAN NATLLF+CL+RSTLC K V E +RLSSEAFEWL+GE
Sbjct: 923 GVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGE 982
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RFQQAQ PGEMVGALAAQSLG
Sbjct: 983 VESRFQQAQAHPGEMVGALAAQSLG 1007
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 134 bits (337), Expect = 7e-30, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L ++ ++VAG D+LS QAN NATLLF+CL+RSTLC K V E +RLSSEAFEWL+GE
Sbjct: 1005 GVEDLCKRLIVVAGGDRLSIQANANATLLFKCLIRSTLCAKRVTEEFRLSSEAFEWLIGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RFQQAQ PGEMVGALAAQSLG
Sbjct: 1065 VESRFQQAQAHPGEMVGALAAQSLG 1089
>gi|13111537|gb|AAK12364.1| RNA polymerase II largest subunit [Chaetopleura apiculata]
Length = 108
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L + VIVAGED+LSKQANENATLL +CL+RSTLC K VAE +RL+ EAFEWL+GE
Sbjct: 20 GVRDLCRRLVIVAGEDRLSKQANENATLLMKCLIRSTLCAKRVAEEHRLTPEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
I++RF Q+Q PGEMVGAL AQSLG
Sbjct: 80 IDSRFHQSQVHPGEMVGALGAQSLG 104
>gi|262303447|gb|ACY44316.1| RNA polymerase largest subunit [Ischnura verticalis]
Length = 655
Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/72 (81%), Positives = 67/72 (93%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++LL KC+IVAGED LSKQAN+NATLLFQCLVRSTLCTK V+E++RLSSEAFEWL+GE
Sbjct: 444 GVQDLLTKCIIVAGEDALSKQANQNATLLFQCLVRSTLCTKCVSEDFRLSSEAFEWLIGE 503
Query: 85 IENRFQQAQCAP 96
IE RFQQAQC P
Sbjct: 504 IETRFQQAQCQP 515
>gi|241301792|ref|XP_002407502.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215497181|gb|EEC06675.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1937
Score = 132 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 62/85 (72%), Positives = 73/85 (85%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED LS QANENATLLF+ L+R+TLC+K VAE +RLS+E+FEWL+GE
Sbjct: 1012 GVEELVKKLVIVPGEDHLSIQANENATLLFRSLLRATLCSKRVAEEFRLSTESFEWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+Q PGEMVGALAAQSLG
Sbjct: 1072 IETRFHQSQGQPGEMVGALAAQSLG 1096
>gi|31127054|gb|AAC03142.2| RNA polymerase II largest subunit [Triops longicaudatus]
Length = 543
Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/72 (84%), Positives = 65/72 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LLEKCV+V GED+LSKQAN NATLLFQCLVRSTLCTK VAE YRLSSEAFEWL+GE
Sbjct: 472 GVRDLLEKCVVVKGEDKLSKQANMNATLLFQCLVRSTLCTKRVAEEYRLSSEAFEWLIGE 531
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 532 IETRFQQAQAQP 543
>gi|38232261|gb|AAR14966.1| RNA polymerase II largest subunit [Eurypauropus spinosus]
Length = 108
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 61/85 (71%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL ++ ++V GED LSKQANENATLLF C +RSTLC+K V+E ++LSSEAFEW++GE
Sbjct: 20 GVRELSKRMIVVTGEDMLSKQANENATLLFNCHLRSTLCSKKVSEEFKLSSEAFEWVLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVG LAAQSLG
Sbjct: 80 IETRFQQAMAHPGEMVGPLAAQSLG 104
>gi|262303441|gb|ACY44313.1| RNA polymerase largest subunit [Ephemerella inconstans]
Length = 654
Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats.
Identities = 60/72 (83%), Positives = 65/72 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAGEDQLSK+ANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGE
Sbjct: 443 GVQNLLTKCIIVAGEDQLSKKANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVGE 502
Query: 85 IENRFQQAQCAP 96
IE RFQQAQC P
Sbjct: 503 IETRFQQAQCQP 514
>gi|262303419|gb|ACY44302.1| RNA polymerase largest subunit [Armillifer armillatus]
Length = 654
Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 60/72 (83%), Positives = 64/72 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL KC+IV GED LSKQANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 443 GVRDLLNKCIIVPGEDPLSKQANENATLLFQCLVRSTLCTKQVAEEFRLSSEAFEWLIGE 502
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 503 IETRFQQAQVQP 514
>gi|427777531|gb|JAA54217.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1941
Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED LS QANENAT LF+ L+R+TLC+K VAE +RLS+E+FEWL+GE
Sbjct: 1009 GVEELVKKLVIVPGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSTESFEWLLGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+Q PGEMVGALAAQSLG
Sbjct: 1069 IETRFHQSQGQPGEMVGALAAQSLG 1093
>gi|156380969|ref|XP_001632039.1| predicted protein [Nematostella vectensis]
gi|156219089|gb|EDO39976.1| predicted protein [Nematostella vectensis]
Length = 1929
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 63/85 (74%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIVAGED +SKQA NATLLF L+RSTLCTK VAE + LSSEAFEWL+GE
Sbjct: 1008 GVRELSKKLVIVAGEDHISKQAQFNATLLFNILLRSTLCTKRVAEEFHLSSEAFEWLLGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF + PGEMVGALAAQSLG
Sbjct: 1068 IETRFNHSHVKPGEMVGALAAQSLG 1092
>gi|38232267|gb|AAR14969.1| RNA polymerase II largest subunit [Forficula auricularia]
Length = 91
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 68/72 (94%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV E+L+KCVIVAG+D LSKQANENATLLFQCLVRSTLC++LV+E +RLSSEAFEWL+GE
Sbjct: 20 GVNEMLKKCVIVAGDDHLSKQANENATLLFQCLVRSTLCSRLVSEEFRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RF+QAQC+P
Sbjct: 80 IETRFRQAQCSP 91
>gi|13123064|gb|AAK12761.1| RNA polymerase II largest subunit [solifugid 'Sol']
Length = 256
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 80/103 (77%), Gaps = 3/103 (2%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ AQ S R I GV EL++K +IV GED+LS QAN+NATLLF+ L+RSTLC K
Sbjct: 5 NTRAQTDLSPLRTIK---GVEELVKKLIIVPGEDRLSIQANDNATLLFRALLRSTLCAKR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V+E +RLS+EAF+WL+ EIE +FQQAQ PGEMVGALAAQSLG
Sbjct: 62 VSEEFRLSTEAFDWLLEEIETKFQQAQGQPGEMVGALAAQSLG 104
>gi|38232247|gb|AAR14959.1| RNA polymerase II largest subunit [Ctenolepisma lineata]
Length = 91
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 73/90 (81%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GV++LL KC+IVAGED LSKQANENATLLFQCLVRSTLCTK
Sbjct: 5 NKRAPTDLSPLRVIQ---GVKDLLRKCIIVAGEDHLSKQANENATLLFQCLVRSTLCTKA 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
V+++ RLS+EAFEWL+GEIE+RFQQAQC P
Sbjct: 62 VSDDSRLSAEAFEWLIGEIESRFQQAQCQP 91
>gi|157841384|gb|ABV83146.1| RNA polymerase 2 [rhabditoid sp. PDL15]
Length = 587
Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats.
Identities = 63/85 (74%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K VIV GED++SKQA NATLL L+RSTLC+K VAE YRL+SEAFEWL+GE
Sbjct: 205 GVRDLSKKLVIVXGEDRISKQAQYNATLLMNILLRSTLCSKQVAEKYRLNSEAFEWLLGE 264
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 265 IETRFQQAIAQPGEMVGALAAQSLG 289
>gi|262303423|gb|ACY44304.1| RNA polymerase largest subunit [Acheta domesticus]
Length = 654
Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats.
Identities = 57/72 (79%), Positives = 66/72 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LSKQAN+NATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 443 GVNDLLKKCIIVAGDDHLSKQANKNATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 502
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ +P
Sbjct: 503 IETRFQQAQVSP 514
>gi|38232335|gb|AAR15003.1| RNA polymerase II largest subunit [Nicoletia meinerti]
Length = 91
Score = 127 bits (320), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 60/73 (82%), Positives = 66/73 (90%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV+ LL+KC+IVAGED LSKQANENATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+G
Sbjct: 19 LGVQALLKKCIIVAGEDHLSKQANENATLLFQCLVRSTLCTKCVAEEFRLSSEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|31127040|gb|AAF26661.2|AF139011_1 RNA polymerase II largest subunit [Tomocerus sp. jcrjws1]
Length = 543
Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KCVIV GED+LSKQAN NATLLFQCLVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 472 GVEDLLKKCVIVVGEDRLSKQANANATLLFQCLVRSTLCTKRVAEEFRLSSEAFEWLIGE 531
Query: 85 IENRFQQAQCAP 96
+E RFQQAQ P
Sbjct: 532 VETRFQQAQVQP 543
>gi|31127050|gb|AAC03139.2| RNA polymerase II largest subunit [Periplaneta americana]
Length = 468
Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats.
Identities = 58/72 (80%), Positives = 66/72 (91%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL+KC+IVAG+D LSKQANENATLLFQCLVRSTLCTK V+E +RLSSEAFEWL+GE
Sbjct: 397 GVSDLLKKCIIVAGDDHLSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGE 456
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ +P
Sbjct: 457 IETRFQQAQVSP 468
>gi|6716468|gb|AAF26629.1|AF138979_1 RNA polymerase II largest subunit [Eumesocampa frigilis]
Length = 91
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 72/90 (80%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GV+EL++KCVIVAG+D+LSK ANENATLLFQCLVRSTLCTK
Sbjct: 5 NKRAPTDLSPLRVIQ---GVQELIKKCVIVAGDDRLSKLANENATLLFQCLVRSTLCTKQ 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE YRLSSEAFEWL+GEIE RFQQAQ P
Sbjct: 62 VAEEYRLSSEAFEWLIGEIETRFQQAQVQP 91
>gi|443728942|gb|ELU15060.1| hypothetical protein CAPTEDRAFT_170227 [Capitella teleta]
Length = 1916
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 62/85 (72%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G+D LSKQAN NATLL + LVRSTLC+K V E +RLSS+AFEWL+GE
Sbjct: 1010 GVRELNKKFMIVKGDDFLSKQANNNATLLIKSLVRSTLCSKRVIEEFRLSSQAFEWLLGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEM GALAAQSLG
Sbjct: 1070 IEARFQQAMTQPGEMCGALAAQSLG 1094
>gi|38232315|gb|AAR14993.1| RNA polymerase II largest subunit [Hexagenia limbata]
Length = 91
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 65/72 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAG+D+LSKQANENATLLFQCLVRS LCTK VA+ YRLS+EAFEWLVGE
Sbjct: 20 GVQNLLSKCIIVAGDDRLSKQANENATLLFQCLVRSILCTKNVADKYRLSAEAFEWLVGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQC P
Sbjct: 80 IETRFQQAQCQP 91
>gi|157841466|gb|ABV83199.1| RNA polymerase 2 [Pellioditis typica]
Length = 633
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL EK VIV+G+D++SKQA NATLL L+RSTLC+K +A YRL+SEAFEW++GE
Sbjct: 217 GVRELSEKLVIVSGDDRISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 277 VETRFKQAIAQPGEMVGALAAQSLG 301
>gi|157841498|gb|ABV83215.1| RNA polymerase 2 [Pristionchus pacificus]
Length = 583
Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K +IV GED++SKQA NATLL LVRSTLC+K +AE +RL+SEAFEWL+GE
Sbjct: 184 GVREVSKKLIIVGGEDRISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGE 243
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 244 IETRFQQAIAQPGEMVGALAAQSLG 268
>gi|391335740|ref|XP_003742247.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1842
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 63/103 (61%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
NS + S R+I GV L++K +IV GED LS QANENATLLF+ L+RSTLC++
Sbjct: 990 NSRGKSDLSPLRVIE---GVESLVKKLIIVPGEDHLSIQANENATLLFRALLRSTLCSRR 1046
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V + +RLS+EAF+WL+GEIE RF Q+Q PGEMVGALAAQSLG
Sbjct: 1047 VGQEFRLSTEAFDWLLGEIEARFHQSQGHPGEMVGALAAQSLG 1089
>gi|157841468|gb|ABV83200.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 628
Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+GED++SKQA NATLL LVRSTLC+K +A Y+L+SEAFEWL+GE
Sbjct: 214 GVRELSQKLIIVSGEDRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGE 273
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 274 VETRFKQAIAQPGEMVGALAAQSLG 298
>gi|157841496|gb|ABV83214.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 630
Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR++ +K +IV GED++SKQA NATLL LVRSTLC+K +AE+Y+L+SEAFEWL+GE
Sbjct: 213 GVRDMAKKLIIVGGEDRISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGE 272
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA PGEMVG LAAQSLG
Sbjct: 273 VETRFQQAIAQPGEMVGPLAAQSLG 297
>gi|157841394|gb|ABV83151.1| RNA polymerase 2 [Rhabditis sp. PS1130]
Length = 619
Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+GED++SKQA NATLL LVRSTLC+K +A Y+L+SEAFEWL+GE
Sbjct: 213 GVRELSKKLIIVSGEDKISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGE 272
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 273 VETRFKQAIAQPGEMVGALAAQSLG 297
>gi|157841458|gb|ABV83194.1| RNA polymerase 2 [Pellioditis typica]
Length = 488
Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL EK VIV+G+D++SKQA NATLL L+RSTLC+K +A YRL+SEAFEW++GE
Sbjct: 203 GVRELSEKLVIVSGDDRISKQAQYNATLLMNILIRSTLCSKKMASTYRLNSEAFEWMLGE 262
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 263 VETRFKQAIAQPGEMVGALAAQSLG 287
>gi|38232231|gb|AAR14951.1| RNA polymerase II largest subunit [Argulus sp. Arg2]
Length = 91
Score = 125 bits (313), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 64/72 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL+KC+IV GED LSK ANENATLLFQCL+RSTLCTKLV+E YRLSSEAFEWL+GE
Sbjct: 20 GVKNLLKKCIIVPGEDPLSKLANENATLLFQCLIRSTLCTKLVSEEYRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQAQP 91
>gi|157841431|gb|ABV83176.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 524
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K VIV GED++SKQA NATLL LVRSTLC+K +A+ YRL+++AFEWL+GE
Sbjct: 211 GVREMSQKLVIVGGEDRISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGE 270
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA PGEMVGALAAQSLG
Sbjct: 271 VETRFQQAIAQPGEMVGALAAQSLG 295
>gi|157841494|gb|ABV83213.1| RNA polymerase 2 [Rhabditoides inermiformis]
Length = 597
Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K VIV GED++SKQA NATLL LVRSTLC+K +A+ YRL+++AFEWL+GE
Sbjct: 179 GVREMSQKLVIVGGEDRISKQAQYNATLLMNILVRSTLCSKQMADKYRLNAQAFEWLLGE 238
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA PGEMVGALAAQSLG
Sbjct: 239 VETRFQQAIAQPGEMVGALAAQSLG 263
>gi|157841405|gb|ABV83158.1| RNA polymerase 2 [Rhabditoides inermis]
Length = 440
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR++ +K +IV GED++SKQA NATLL LVRSTLC+K +AE+Y+L+SEAFEWL+GE
Sbjct: 176 GVRDMAKKLIIVGGEDRISKQAQYNATLLMNILVRSTLCSKKMAEHYKLNSEAFEWLLGE 235
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA PGEMVG LAAQSLG
Sbjct: 236 VETRFQQAIAQPGEMVGPLAAQSLG 260
>gi|123316013|gb|ABM74385.1| RNA polymerase II largest subunit [Priapulus caudatus]
Length = 434
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED+LSKQA ENATL ++RSTLCTK VAE Y+L++E+FEWL+GE
Sbjct: 152 GVRDLSKKLIIVEGEDRLSKQAQENATLNINAMLRSTLCTKRVAEEYKLTTESFEWLLGE 211
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RFQ AQ PGEMVG LAAQSLG
Sbjct: 212 VESRFQHAQAQPGEMVGPLAAQSLG 236
>gi|391332786|ref|XP_003740810.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Metaseiulus occidentalis]
Length = 1851
Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats.
Identities = 62/103 (60%), Positives = 78/103 (75%), Gaps = 3/103 (2%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
NS + S R+I GV L++K +IV G+D LS QANENATLLF+ L+RSTLC++
Sbjct: 991 NSRGKTDLSPLRVIE---GVESLVKKLIIVPGDDHLSIQANENATLLFRALLRSTLCSRR 1047
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V + +RLS+EAF+WL+GEIE RF Q+Q PGEMVGALAAQSLG
Sbjct: 1048 VGQEFRLSTEAFDWLLGEIEARFHQSQGQPGEMVGALAAQSLG 1090
>gi|295873244|gb|ADG48704.1| CG1554 [Drosophila teissieri]
gi|295873246|gb|ADG48705.1| CG1554 [Drosophila teissieri]
gi|295873248|gb|ADG48706.1| CG1554 [Drosophila teissieri]
gi|295873250|gb|ADG48707.1| CG1554 [Drosophila teissieri]
gi|295873252|gb|ADG48708.1| CG1554 [Drosophila teissieri]
gi|295873254|gb|ADG48709.1| CG1554 [Drosophila teissieri]
gi|295873256|gb|ADG48710.1| CG1554 [Drosophila teissieri]
gi|295873258|gb|ADG48711.1| CG1554 [Drosophila teissieri]
gi|295873260|gb|ADG48712.1| CG1554 [Drosophila teissieri]
gi|295873262|gb|ADG48713.1| CG1554 [Drosophila teissieri]
gi|295873264|gb|ADG48714.1| CG1554 [Drosophila teissieri]
gi|295873266|gb|ADG48715.1| CG1554 [Drosophila teissieri]
gi|295873268|gb|ADG48716.1| CG1554 [Drosophila teissieri]
gi|295873270|gb|ADG48717.1| CG1554 [Drosophila teissieri]
Length = 306
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 63/68 (92%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWL+GEIE RFQQAQ PGEMVG
Sbjct: 1 ISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLIGEIETRFQQAQANPGEMVG 60
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 61 ALAAQSLG 68
>gi|6716498|gb|AAF26659.1|AF139009_1 RNA polymerase II largest subunit [Speleonectes tulumensis]
Length = 91
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/72 (81%), Positives = 64/72 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL KCVIV GED +S ANENATLLFQCLVRSTLCTKLVA+ +RLSSEAFEWL+GE
Sbjct: 20 GVRALLSKCVIVEGEDPMSILANENATLLFQCLVRSTLCTKLVAQEHRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE+RFQQAQC P
Sbjct: 80 IESRFQQAQCQP 91
>gi|31127052|gb|AAC03140.2| RNA polymerase II largest subunit [Pedetontus saltator]
Length = 722
Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats.
Identities = 57/72 (79%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAGED LSK ANENATLLF+CLVRSTLCT+ VAE +RLSSEAFEWL GE
Sbjct: 651 GVQHLLSKCIIVAGEDHLSKLANENATLLFRCLVRSTLCTRRVAEEFRLSSEAFEWLTGE 710
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 711 IETRFQQAQVQP 722
>gi|78190643|gb|ABB29643.1| DNA-directed RNA polymerase II largest subunit [Suberites fuscus]
Length = 260
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L K +IV GED+LSKQA NATLLF+ L+RS LCTK ++E ++L+ EAFEW++GE
Sbjct: 160 GVRDLSNKLIIVQGEDELSKQAQTNATLLFKSLLRSVLCTKKMSEEHKLNLEAFEWVLGE 219
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 220 IETRFQQAQAQPGEMVGALAAQSLG 244
>gi|38232441|gb|AAR15056.1| RNA polymerase II largest subunit [Richtersius coronifer]
Length = 91
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/72 (80%), Positives = 65/72 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL+ CVIV GED+LSKQAN+NATLLFQCLVRSTLCTK VAE +RL+SEAFEWL+GE
Sbjct: 20 GVRDLLKNCVIVNGEDKLSKQANQNATLLFQCLVRSTLCTKRVAEEHRLNSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQAMP 91
>gi|1916663|gb|AAB51211.1| large subunit RNA polymerase II, partial [Mesorhabditis sp.]
Length = 633
Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G+D++S+QA NATLL L+RSTLC+K +AE YRL+ E FEWL+GE
Sbjct: 217 GVRELSKKLIIVSGDDRISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 277 IEHRFQQAIAQPGEMVGALAAQSLG 301
>gi|13111552|gb|AAK12371.1| RNA polymerase II largest subunit [Peripatus sp. Per2]
gi|38232431|gb|AAR15051.1| RNA polymerase II largest subunit [Peripatus sp. Per2]
Length = 300
Score = 124 bits (310), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L ++ +IV GED++SKQA ENATLL LVR+TLC+K V + ++LS+EAFEWL+GE
Sbjct: 20 GVRDLSKRLIIVPGEDRISKQAQENATLLMNILVRATLCSKRVTKEHKLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QAQ PGEMVGALAAQSLG
Sbjct: 80 IETRFAQAQGQPGEMVGALAAQSLG 104
>gi|48869087|gb|AAT47141.1| RNA polymerase 2 [Prodontorhabditis wirthi]
Length = 630
Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED++SKQA NATLL L+RSTLC+K +A Y+L SEAF+WL+GE
Sbjct: 223 GVRELSKKLIIVNGEDRISKQAQYNATLLTNILIRSTLCSKKMASTYKLDSEAFDWLLGE 282
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRFQ A PGEMVGALAAQSLG
Sbjct: 283 IENRFQSAIAQPGEMVGALAAQSLG 307
>gi|157841488|gb|ABV83210.1| RNA polymerase 2 [Pelodera punctata]
Length = 605
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 59/85 (69%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED++SKQA NATLL L+RSTLC+K +AE YRL+ E FEWL+GE
Sbjct: 198 GVRELSKKLIIVCGEDRISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGE 257
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 258 IEHRFNQAVAQPGEMVGALAAQSLG 282
>gi|393905343|gb|EFO23174.2| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1870
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV+GED++SKQA NATLL L+RSTLC K +AE +RL+SE FEWL+GE
Sbjct: 1004 GVKELSKKLVIVSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGA+AAQSLG
Sbjct: 1064 IESRFKQAIVQPGEMVGAIAAQSLG 1088
>gi|312076520|ref|XP_003140898.1| DNA-directed RNA polymerase II largest subunit [Loa loa]
Length = 1875
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV+GED++SKQA NATLL L+RSTLC K +AE +RL+SE FEWL+GE
Sbjct: 1009 GVKELSKKLVIVSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGA+AAQSLG
Sbjct: 1069 IESRFKQAIVQPGEMVGAIAAQSLG 1093
>gi|170587086|ref|XP_001898310.1| DNA-directed RNA polymerase II largest subunit [Brugia malayi]
gi|158594705|gb|EDP33289.1| DNA-directed RNA polymerase II largest subunit, putative [Brugia
malayi]
Length = 1943
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV+GED++SKQA NATLL L+RSTLC K +AE +RL+SE FEWL+GE
Sbjct: 1077 GVKELSKKLVIVSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGE 1136
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGA+AAQSLG
Sbjct: 1137 IESRFKQAIVQPGEMVGAIAAQSLG 1161
>gi|157841386|gb|ABV83147.1| RNA polymerase 2 [Poikilolaimus regenfussi]
Length = 620
Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats.
Identities = 60/85 (70%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G+D++SKQA NATLL L+RSTLC+K VAE +RL+ EAFEWL+GE
Sbjct: 213 GVRELSKKLVIVGGDDRISKQAQFNATLLMNILLRSTLCSKQVAEKHRLNQEAFEWLIGE 272
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QA PGEMVGALAAQSLG
Sbjct: 273 IETRFXQAIAQPGEMVGALAAQSLG 297
>gi|38232305|gb|AAR14988.1| RNA polymerase II largest subunit [Lynceus sp. JCR-2003]
Length = 91
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GVRELL KCVIV G+D+LS+QAN+NATLLFQCLVRSTLCTK
Sbjct: 5 NKRATTDLSPVRVIQ---GVRELLHKCVIVNGDDKLSRQANDNATLLFQCLVRSTLCTKR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE YRLSSE+FE L+GEIE RFQQAQ P
Sbjct: 62 VAEEYRLSSESFEELIGEIETRFQQAQAQP 91
>gi|157841480|gb|ABV83206.1| RNA polymerase 2 [Pellioditis mediterranea]
Length = 618
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR++ EK +IVAGED++SKQA NATLL L+RSTLC+K +A +Y+L+SEAFEWL+GE
Sbjct: 218 GVRDMSEKLIIVAGEDRISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGE 277
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVG LAAQSLG
Sbjct: 278 VETRFKQAIAQPGEMVGPLAAQSLG 302
>gi|316997013|dbj|BAJ52634.1| RNA polymerase II largest subunit [Ephydatia fluviatilis]
Length = 1146
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/84 (66%), Positives = 69/84 (82%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V L +K +IV GED +SK+A ENATLLF CL+RSTLC++ VAE ++L+ EAFEW++G I
Sbjct: 515 VEMLKKKLIIVGGEDDISKEAQENATLLFNCLLRSTLCSRRVAEEHKLTKEAFEWVLGXI 574
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF+QAQ PGEMVGALAAQSLG
Sbjct: 575 EARFKQAQAHPGEMVGALAAQSLG 598
>gi|157841402|gb|ABV83156.1| RNA polymerase 2 [Oscheius insectivora]
Length = 474
Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL EK VIV G+D++SKQA NATLL L+RSTLC+K +A Y+L+ EAFEWL+GE
Sbjct: 210 GVRELSEKLVIVCGDDRISKQAQYNATLLMNILLRSTLCSKKMATTYKLNQEAFEWLLGE 269
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 270 VETRFKQAIAQPGEMVGALAAQSLG 294
>gi|402590450|gb|EJW84380.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 1251
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV+GED++SKQA NATLL L+RSTLC K +AE +RL+SE FEWL+GE
Sbjct: 385 GVKELSKKLVIVSGEDRISKQAQYNATLLMNILLRSTLCAKRMAEKHRLNSEGFEWLIGE 444
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGA+AAQSLG
Sbjct: 445 IESRFKQAIVQPGEMVGAIAAQSLG 469
>gi|157841419|gb|ABV83168.1| RNA polymerase 2 [Phasmarhabditis sp. EM434]
Length = 398
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+GED++SKQA NATLL L+RSTLC+K +A ++RL+SEAFEWL+GE
Sbjct: 221 GVRELSKKLIIVSGEDRISKQAQYNATLLMNILIRSTLCSKKMATSHRLNSEAFEWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 281 VETRFKQAIAQPGEMVGALAAQSLG 305
>gi|157841382|gb|ABV83145.1| RNA polymerase 2 [Distolabrellus veechi]
Length = 583
Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K +IV G+D++SK A NATLL LVRSTLC+K +A+ YRL+ EAFEWL+GE
Sbjct: 204 GVREMSKKLIIVCGDDRISKHAQYNATLLMNILVRSTLCSKQMADKYRLNEEAFEWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 264 IEHRFQQAIVQPGEMVGALAAQSLG 288
>gi|340368153|ref|XP_003382617.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Amphimedon queenslandica]
Length = 1933
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K V+V G+D LS+QA NATLLF +RSTLCTK +AE ++L+ EAFEWL+GE
Sbjct: 1006 GVKELNDKLVVVKGDDALSRQAQINATLLFSIFLRSTLCTKRMAEEHKLTEEAFEWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ+A PGEMVGALAAQSLG
Sbjct: 1066 IETRFQRAHVQPGEMVGALAAQSLG 1090
>gi|157841478|gb|ABV83205.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 526
Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats.
Identities = 61/108 (56%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 7 NSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRST 61
N+ + R++ LN GVR L +K +IV+GED++SKQA NATLL L+RST
Sbjct: 95 NAQKIFKVETRKLTNLNPTRVIDGVRNLSKKLIIVSGEDRISKQAQYNATLLMNILLRST 154
Query: 62 LCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
LC+K +A Y+L++EAFEWL+GE+E RFQQA PGEMVGALAAQSLG
Sbjct: 155 LCSKKMASTYKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLG 202
>gi|395533542|ref|XP_003768816.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Sarcophilus
harrisii]
Length = 1921
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV GED LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|126309154|ref|XP_001364909.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Monodelphis domestica]
Length = 1932
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV GED LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|126309152|ref|XP_001364837.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Monodelphis domestica]
Length = 1970
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV GED LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio rerio]
Length = 1921
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+DQLS+QA ENATLLF +RSTLC+K + E +RLS+EAF+WL+GE
Sbjct: 1009 GVKELSKKLVIVNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEMVGALAAQSLG
Sbjct: 1069 IETKFNQSIAHPGEMVGALAAQSLG 1093
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+DQLS+QA ENATLLF +RSTLC+K + E +RLS+EAF+WL+GE
Sbjct: 1009 GVKELSKKLVIVNGDDQLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEMVGALAAQSLG
Sbjct: 1069 IETKFNQSIAHPGEMVGALAAQSLG 1093
>gi|324499938|gb|ADY39985.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1867
Score = 121 bits (304), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV+G+D++SKQA NATLL L+RSTLC+K +AE ++L+ EAFEWL+GE
Sbjct: 1004 GVRELSKKLVIVSGDDRISKQAQYNATLLMNILLRSTLCSKRMAEKHKLNMEAFEWLIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGA+AAQSLG
Sbjct: 1064 IESRFKQAIVQPGEMVGAIAAQSLG 1088
>gi|6716480|gb|AAF26641.1|AF138991_1 RNA polymerase II largest subunit [Machiloides banksi]
Length = 91
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC+IVAGED LSK AN NATLLFQCLVRSTLCT+ VAE +RLSSEAFEWL+GE
Sbjct: 20 GVQNLLSKCIIVAGEDHLSKMANANATLLFQCLVRSTLCTRRVAEEFRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|1916659|gb|AAB51210.1| large subunit RNA polymerase II, partial [Cruznema tripartitum]
Length = 633
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV GED++SKQA NATLL L+RSTLC+K +A +Y+L+ EAF+WL+GE
Sbjct: 217 GVRELSKKLVIVGGEDRISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQ PGEMVGALAAQSLG
Sbjct: 277 VETRFQQPIAQPGEMVGALAAQSLG 301
>gi|157841399|gb|ABV83154.1| RNA polymerase 2 [Rhabditis brassicae]
Length = 406
Score = 121 bits (303), Expect = 6e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+GE+++SKQA NATLL LVRSTLC+K +A Y+L+SEAFEWL+GE
Sbjct: 221 GVRELSQKLIIVSGENRISKQAQYNATLLMNILVRSTLCSKKMASKYKLNSEAFEWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 281 VETRFKQAIAQPGEMVGALAAQSLG 305
>gi|38232275|gb|AAR14973.1| RNA polymerase II largest subunit [Harbansus paucichelatus]
Length = 91
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/72 (79%), Positives = 65/72 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRELL+KCVIV GED+LS AN+NATLLFQCL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRELLKKCVIVPGEDRLSILANQNATLLFQCLIRSTLCTKRVAEEHRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE+RFQQA +P
Sbjct: 80 IESRFQQAMASP 91
>gi|1778038|gb|AAB40622.1| RNA polymerase II large subunit, partial [Zeldia punctata]
Length = 629
Score = 120 bits (302), Expect = 7e-26, Method: Composition-based stats.
Identities = 58/85 (68%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV+GED++SKQA NATLL L+RSTLC+K VA+ ++L++EAFEW++GE
Sbjct: 214 GVRELNKKLVIVSGEDRISKQAQYNATLLMNILLRSTLCSKQVAKVHKLNTEAFEWILGE 273
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF QA PGEMVGALAAQSLG
Sbjct: 274 IETRFNQAIAQPGEMVGALAAQSLG 298
>gi|1778036|gb|AAB40621.1| RNA polymerase II large subunit, partial [Aduncospiculum halicti]
Length = 631
Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats.
Identities = 61/108 (56%), Positives = 77/108 (71%), Gaps = 5/108 (4%)
Query: 7 NSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRST 61
N+ + R++ LN GVRE+ +K +IV G+D++S QA NATLL LVRST
Sbjct: 194 NAQKIFHVETRKVTDLNPVRVIQGVREVSKKLIIVGGDDRISVQAQYNATLLMNILVRST 253
Query: 62 LCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
LC K +AE ++L++EAFEWL+GEIE RFQQA PGEMVGALAAQSLG
Sbjct: 254 LCAKAMAEKHKLNAEAFEWLLGEIETRFQQAIAQPGEMVGALAAQSLG 301
>gi|38232415|gb|AAR15043.1| RNA polymerase II largest subunit [Isohypsibius elegans]
Length = 304
Score = 120 bits (302), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 71/85 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ EL++K VIV GED+LS++A ENAT+L ++RSTLC+K +AE Y L++EAFEWL+GE
Sbjct: 143 GLNELMKKLVIVKGEDRLSREAQENATILMNTMLRSTLCSKRMAEEYHLNTEAFEWLLGE 202
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ PGEMVGALAAQSLG
Sbjct: 203 IESRFAQSMVQPGEMVGALAAQSLG 227
>gi|520513|gb|AAA50227.1| RNA polymerase II, largest subunit, partial [Helobdella stagnalis]
Length = 1337
Score = 120 bits (301), Expect = 9e-26, Method: Composition-based stats.
Identities = 59/84 (70%), Positives = 69/84 (82%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL +K +IV GED+LSK AN NATLL LVRSTLC+K V E + LS+EAFEWL+GEI
Sbjct: 920 VRELSKKFMIVKGEDRLSKTANTNATLLMNILVRSTLCSKRVIEEFHLSTEAFEWLMGEI 979
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E++F QA+ PGEMVGALAAQSLG
Sbjct: 980 ESKFIQARVQPGEMVGALAAQSLG 1003
>gi|1916666|gb|AAB51212.1| large subunit RNA polymerase II, partial [Teratorhabditis palmarum]
Length = 631
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 72/85 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL +K VIV+GED++SKQA NATLL L+RSTLC+K VA ++L++EAF+WL+GE
Sbjct: 217 GIRELSKKLVIVSGEDRISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA PGEMVGALAAQSLG
Sbjct: 277 IEHRFKQAIAQPGEMVGALAAQSLG 301
>gi|157841390|gb|ABV83149.1| RNA polymerase 2 [Acrobeloides maximus]
Length = 616
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 60/98 (61%), Positives = 76/98 (77%), Gaps = 5/98 (5%)
Query: 17 RRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENY 71
R+ + LN GVREL +K +IV+GED++SKQA NATLL L+RSTLC+K VA+ +
Sbjct: 208 RKTVDLNPVRVIEGVRELSKKLIIVSGEDRISKQAQYNATLLMNILLRSTLCSKQVAKVH 267
Query: 72 RLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+L++EAFEW++GEIE RF QA PGEMVGALAAQSLG
Sbjct: 268 KLNTEAFEWILGEIETRFNQAIAQPGEMVGALAAQSLG 305
>gi|31127036|gb|AAF26656.2|AF139006_1 RNA polymerase II largest subunit [Scolopendra polymorpha]
Length = 734
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL++K VIV GED LS+ ANENATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 663 GVRELVKKIVIVQGEDPLSRMANENATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLLGE 722
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 723 IETRFQQAQVQP 734
>gi|38232211|gb|AAR14941.1| RNA polymerase II largest subunit [Acanthocyclops vernalis]
Length = 91
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/73 (73%), Positives = 65/73 (89%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IGVRELL+KC++V G+D+LSK AN+NAT LFQCLVRSTLC+K+VAE YRLS EAFEWL+G
Sbjct: 19 IGVRELLDKCIVVRGDDKLSKLANDNATTLFQCLVRSTLCSKIVAEQYRLSEEAFEWLLG 78
Query: 84 EIENRFQQAQCAP 96
EIE++F QAQ P
Sbjct: 79 EIESKFMQAQATP 91
>gi|444722932|gb|ELW63604.1| DNA-directed RNA polymerase II subunit RPB1 [Tupaia chinensis]
Length = 1801
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1053 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1112
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1113 IESKFNQAIAHPGEMVGALAAQSLG 1137
>gi|431894008|gb|ELK03814.1| DNA-directed RNA polymerase II subunit RPB1 [Pteropus alecto]
Length = 1975
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1017 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1076
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1077 IESKFNQAIAHPGEMVGALAAQSLG 1101
>gi|426383941|ref|XP_004058535.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Gorilla gorilla gorilla]
Length = 1883
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|426383939|ref|XP_004058534.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Gorilla gorilla gorilla]
Length = 1921
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|426238812|ref|XP_004013338.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Ovis aries]
Length = 1897
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|6677795|ref|NP_033115.1| DNA-directed RNA polymerase II subunit RPB1 [Mus musculus]
gi|200794|gb|AAA40071.1| RNA polymerase II [Mus musculus]
Length = 1932
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|2145091|gb|AAB58418.1| RNA polymerase II largest subunit [Mus musculus]
Length = 1966
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|133327|sp|P08775.3|RPB1_MOUSE RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|2443334|dbj|BAA22376.1| RNA polymerase II largest subunit [Cricetulus griseus]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|410979885|ref|XP_003996311.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Felis catus]
Length = 1817
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|402898581|ref|XP_003912299.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Papio anubis]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|397477903|ref|XP_003846225.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pan paniscus]
Length = 1719
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|395836506|ref|XP_003791195.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Otolemur
garnettii]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|395748505|ref|XP_002827010.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 [Pongo abelii]
Length = 1967
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|390462987|ref|XP_003732945.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Callithrix jacchus]
Length = 1899
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 979 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1038
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1039 IESKFNQAIAHPGEMVGALAAQSLG 1063
>gi|380793277|gb|AFE68514.1| DNA-directed RNA polymerase II subunit RPB1, partial [Macaca mulatta]
Length = 1658
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|355568192|gb|EHH24473.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca mulatta]
gi|355753712|gb|EHH57677.1| DNA-directed RNA polymerase II subunit RPB1 [Macaca fascicularis]
Length = 1629
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1022 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1081
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1082 IESKFNQAIAHPGEMVGALAAQSLG 1106
>gi|351701567|gb|EHB04486.1| DNA-directed RNA polymerase II subunit RPB1 [Heterocephalus glaber]
gi|417406836|gb|JAA50059.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|345800197|ref|XP_857844.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1 isoform 3 [Canis lupus familiaris]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|344290440|ref|XP_003416946.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Loxodonta
africana]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|332847192|ref|XP_511300.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Pan
troglodytes]
Length = 1907
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|301778185|ref|XP_002924473.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Ailuropoda melanoleuca]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|296476824|tpg|DAA18939.1| TPA: polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Bos
taurus]
Length = 1323
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|296201388|ref|XP_002748007.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Callithrix jacchus]
Length = 1937
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 979 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1038
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1039 IESKFNQAIAHPGEMVGALAAQSLG 1063
>gi|293340189|ref|XP_002724554.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|293351610|ref|XP_002727769.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1932
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|281352199|gb|EFB27783.1| hypothetical protein PANDA_013866 [Ailuropoda melanoleuca]
Length = 1989
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1017 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1076
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1077 IESKFNQAIAHPGEMVGALAAQSLG 1101
>gi|281185484|sp|P24928.2|RPB1_HUMAN RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase II subunit A; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName:
Full=RNA-directed RNA polymerase II subunit RPB1
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|194217622|ref|XP_001918406.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Equus caballus]
Length = 1834
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|329663165|ref|NP_001193242.1| DNA-directed RNA polymerase II subunit RPB1 [Bos taurus]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|119610588|gb|EAW90182.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_b [Homo sapiens]
Length = 1511
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 591 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 650
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 651 IESKFNQAIAHPGEMVGALAAQSLG 675
>gi|119610589|gb|EAW90183.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_c [Homo sapiens]
Length = 1549
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 591 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 650
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 651 IESKFNQAIAHPGEMVGALAAQSLG 675
>gi|109488292|ref|XP_343923.3| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 2
[Rattus norvegicus]
gi|109491096|ref|XP_001079162.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Rattus norvegicus]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|4505939|ref|NP_000928.1| DNA-directed RNA polymerase II subunit RPB1 [Homo sapiens]
gi|345842509|ref|NP_001230931.1| polymerase (RNA) II (DNA directed) polypeptide A [Cricetulus griseus]
gi|332251063|ref|XP_003274666.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Nomascus
leucogenys]
gi|403274932|ref|XP_003929214.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Saimiri
boliviensis boliviensis]
gi|36124|emb|CAA45125.1| RNA polymerase II largest subunit [Homo sapiens]
gi|2443336|dbj|BAA22377.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|14328881|dbj|BAB60684.1| RNA polymerase II largest subunit [Cricetulus griseus]
gi|119610587|gb|EAW90181.1| polymerase (RNA) II (DNA directed) polypeptide A, 220kDa, isoform
CRA_a [Homo sapiens]
gi|223460954|gb|AAI37232.1| Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa [Homo
sapiens]
Length = 1970
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|161897752|gb|ABX80021.1| RNA polymerase 2 largest subunit [Cephaloboides cf. armata SB363]
Length = 475
Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL K VIV+GED++S+QA NATLL L+RSTLC+K +A ++L+SEAFEWL+GE
Sbjct: 211 GIRELSTKLVIVSGEDRISQQAQYNATLLMNILIRSTLCSKKMASTHKLNSEAFEWLLGE 270
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+QA PGEMVGALAAQSLG
Sbjct: 271 IETRFKQAIAQPGEMVGALAAQSLG 295
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Xenopus (Silurana) tropicalis]
Length = 1946
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G+D LS+QA ENATLLF +RSTLC++ + E +RLS EAF+WL+GE
Sbjct: 988 GVRELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMVEEFRLSGEAFDWLLGE 1047
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1048 IESKFNQAVAHPGEMVGALAAQSLG 1072
>gi|50346876|gb|AAT75145.1| RNA polymerase 2 [Rhabditella axei]
Length = 621
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G++EL K +IV+GED++S+QA NATLL L+RSTLC+K +A Y+L++E+FEWL+GE
Sbjct: 221 GIKELSSKLIIVSGEDRISQQAQYNATLLMNILIRSTLCSKKMASTYKLNAESFEWLIGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+QA PGEMVGALAAQSLG
Sbjct: 281 IETRFKQAIAQPGEMVGALAAQSLG 305
>gi|38232375|gb|AAR15023.1| RNA polymerase II largest subunit [Skogsbergia lerneri]
Length = 91
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 64/72 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +LL++CVIV GED+LS QANENATLLF CLVRSTLCTK VAE +RLSSEAF+WLVGE
Sbjct: 20 GVNDLLKRCVIVPGEDRLSVQANENATLLFHCLVRSTLCTKRVAEEHRLSSEAFDWLVGE 79
Query: 85 IENRFQQAQCAP 96
IE+RFQQA +P
Sbjct: 80 IESRFQQAMASP 91
>gi|157841366|gb|ABV83137.1| RNA polymerase 2 [Rhabditis rainai]
Length = 618
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +IV+G+D +SKQA NATLL L+RSTLC+K +A Y+L+SEAFEWL+GE
Sbjct: 212 GVQELSKKLIIVSGDDSISKQAQYNATLLMNILLRSTLCSKRMASMYKLNSEAFEWLLGE 271
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA PGEMVGALAAQSLG
Sbjct: 272 VETRFKQAIAQPGEMVGALAAQSLG 296
>gi|157841486|gb|ABV83209.1| RNA polymerase 2 [Pelodera strongyloides dermatitica]
Length = 633
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL K VIV G+D++SKQA NATLL L+RSTLC+K +AE +RL+ E FEWL+GE
Sbjct: 222 GVKELSHKLVIVCGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGE 281
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 282 IEHRFNQAIAQPGEMVGALAAQSLG 306
>gi|260796451|ref|XP_002593218.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
gi|229278442|gb|EEN49229.1| hypothetical protein BRAFLDRAFT_120136 [Branchiostoma floridae]
Length = 1934
Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L K VIV G+D +S QA NAT+LF L+RSTLCT+ V E +RLS+EAF+WL+GE
Sbjct: 1008 GVRDLSRKLVIVKGDDPISIQAQANATILFNTLLRSTLCTRRVLEEFRLSTEAFDWLLGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 1068 IESRFNQAIVQPGEMVGALAAQSLG 1092
>gi|327287678|ref|XP_003228555.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Anolis
carolinensis]
Length = 1969
Score = 119 bits (298), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LSKQA ENATLLF +RSTLC++ + E +RLS EAF+WL+GE
Sbjct: 1011 GVKELSKKLVIVNGDDPLSKQAQENATLLFNIHLRSTLCSRRMIEEFRLSGEAFDWLLGE 1070
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1071 IESKFNQAIAHPGEMVGALAAQSLG 1095
>gi|157841490|gb|ABV83211.1| RNA polymerase 2 [Pelodera teres]
Length = 629
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 59/108 (54%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 7 NSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRST 61
N+ + R++ LN GVR+L +K +IV G+D++SKQA NATLL L+RST
Sbjct: 194 NAQKIFKVETRKVTALNPLRVVQGVRDLSKKLIIVMGDDRISKQAQYNATLLVNILIRST 253
Query: 62 LCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
LC+K ++E +RL+ AF+WL+GEIE+RFQQA PGEMVGALAAQSLG
Sbjct: 254 LCSKQMSEKHRLNESAFDWLLGEIEHRFQQAIVQPGEMVGALAAQSLG 301
>gi|432105605|gb|ELK31799.1| DNA-directed RNA polymerase II subunit RPB1 [Myotis davidii]
Length = 1970
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKDLSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|156405|gb|AAA28126.1| RNA polymerase II [Caenorhabditis elegans]
Length = 1859
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GE
Sbjct: 1012 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 1072 IESRFQQAIAQPGEMVGALAAQSLG 1096
>gi|392898787|ref|NP_500523.4| Protein AMA-1 [Caenorhabditis elegans]
gi|380865455|sp|P16356.3|RPB1_CAEEL RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|351061691|emb|CCD69532.1| Protein AMA-1 [Caenorhabditis elegans]
Length = 1856
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GE
Sbjct: 1006 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLG 1090
>gi|157841376|gb|ABV83142.1| RNA polymerase 2 [Pelodera strongyloides dermatitica]
Length = 478
Score = 119 bits (297), Expect = 3e-25, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL K VIV G+D++SKQA NATLL L+RSTLC+K +AE +RL+ E FEWL+GE
Sbjct: 203 GVKELSHKLVIVCGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHRLNEEGFEWLLGE 262
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 263 IEHRFNQAIAQPGEMVGALAAQSLG 287
>gi|216296571|gb|ACJ72070.1| RNA polymerase II largest subunit [Trichoplax adhaerens]
Length = 625
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 57/84 (67%), Positives = 67/84 (79%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL K VIV GED++SKQA ENATLLF L+RS L +K V E Y L+SEAF+WL+GE+
Sbjct: 540 VCELSRKLVIVHGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEV 599
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RFQQ+Q PGEMVG LAAQSLG
Sbjct: 600 ESRFQQSQVQPGEMVGPLAAQSLG 623
>gi|6624239|dbj|BAA88484.1| RNA polymerase II largest subunit [Eptatretus burgeri]
Length = 595
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L +K IV G+D +S+QA +NATLLF C VR+TLCT+ +AE +RLSSEAFEWL+GE
Sbjct: 511 GVNDLTQKLQIVKGDDPISRQAQQNATLLFNCHVRATLCTRRLAEEHRLSSEAFEWLLGE 570
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F A PGEMVGALAAQSLG
Sbjct: 571 IEAKFNHAIVHPGEMVGALAAQSLG 595
>gi|194389262|dbj|BAG65619.1| unnamed protein product [Homo sapiens]
Length = 1935
Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 977 GVKKLSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1036
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1037 IESKFNQAIAHPGEMVGALAAQSLG 1061
>gi|268553547|ref|XP_002634760.1| C. briggsae CBR-RPB-1 protein [Caenorhabditis briggsae]
gi|60393735|sp|P35074.2|RPB1_CAEBR RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
Length = 1853
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 1006 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAIAQPGEMVGALAAQSLG 1090
>gi|341894670|gb|EGT50605.1| hypothetical protein CAEBREN_32550 [Caenorhabditis brenneri]
Length = 1713
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 1025 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 1084
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 1085 IETRFQQAIAQPGEMVGALAAQSLG 1109
>gi|356605952|gb|AET25007.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 10
KK-2011]
Length = 599
Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K VIV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 201 GVRDLSKKLVIVSGNDEISKQAQXNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 260
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 261 IESRFQQAIAQPGEMVGALAAQSLG 285
>gi|161897749|gb|ABX80019.1| RNA polymerase 2 largest subunit [Diploscapter sp. JU359]
Length = 284
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV+GED++SKQA NATLL L+RSTLC+K + Y+L SEAFEWL+GE
Sbjct: 13 GVRELSRKLIIVSGEDRISKQAQYNATLLMXILLRSTLCSKKMGMAYKLDSEAFEWLLGE 72
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF QA PGEMVGALAAQSLG
Sbjct: 73 VEQRFNQAIAQPGEMVGALAAQSLG 97
>gi|356605956|gb|AET25009.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 7
KK-2011]
Length = 621
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G+D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 203 GVRELSKKLIIVSGKDEISKQAQYNATLLMNILLRSTLCTKKLCTTSKLNTEAFDWLLGE 262
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 263 IESRFQQAIAQPGEMVGALAAQSLG 287
>gi|356605958|gb|AET25010.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 9
KK-2011]
Length = 607
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 201 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 260
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 261 IETRFQQAIAQPGEMVGALAAQSLG 285
>gi|356605932|gb|AET24997.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 14
KK-2011]
Length = 624
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 206 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGE 265
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 266 IESRFQQAIAQPGEMVGALAAQSLG 290
>gi|356605944|gb|AET25003.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 19
KK-2011]
Length = 610
Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 202 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTTAKLNTEAFDWLLGE 261
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 262 IETRFQQAIAQPGEMVGALAAQSLG 286
>gi|50346868|gb|AAT75142.1| RNA polymerase 2 [Caenorhabditis brenneri]
Length = 596
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 196 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 255
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 256 IETRFQQAIAQPGEMVGALAAQSLG 280
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Oryzias
latipes]
Length = 1599
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +IV G+D LS+QA ENATLLF +RSTLC+K + E +RLS+EAF+WL+GE
Sbjct: 1010 GVQELSKKLIIVNGDDPLSRQAQENATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEMVGALAAQSLG
Sbjct: 1070 IETKFNQSIAHPGEMVGALAAQSLG 1094
>gi|308468219|ref|XP_003096353.1| CRE-AMA-1 protein [Caenorhabditis remanei]
gi|308243268|gb|EFO87220.1| CRE-AMA-1 protein [Caenorhabditis remanei]
Length = 1853
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 1006 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RFQQA PGEMVGALAAQSLG
Sbjct: 1066 VESRFQQAIAQPGEMVGALAAQSLG 1090
>gi|50346858|gb|AAT75140.1| RNA polymerase 2 [Caenorhabditis remanei]
Length = 611
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 204 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RFQQA PGEMVGALAAQSLG
Sbjct: 264 VESRFQQAIAQPGEMVGALAAQSLG 288
>gi|356605930|gb|AET24996.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 18
KK-2011]
Length = 598
Score = 117 bits (294), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 199 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTTAKLNTEAFDWLLGE 258
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 259 IETRFQQAIAQPGEMVGALAAQSLG 283
>gi|157841492|gb|ABV83212.1| RNA polymerase 2 [Rhabditoides regina]
Length = 626
Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats.
Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 5/108 (4%)
Query: 7 NSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRST 61
N+ + R++ LN GVR + +K VIV+G+D++SKQA NATLL L+RST
Sbjct: 194 NAQKIFKVETRKVTALNPLRVIEGVRNVSKKLVIVSGDDRISKQAQYNATLLMNILIRST 253
Query: 62 LCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
LC+K +AE ++L+ E FEWL+GEIE RFQ A PGEMVGALAAQSLG
Sbjct: 254 LCSKQMAEKHKLNEEGFEWLLGEIETRFQLAIAQPGEMVGALAAQSLG 301
>gi|157841454|gb|ABV83191.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 271
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV+GED++SKQA NATLL L+RSTLC+K + +Y+L SEAFEWL+GE
Sbjct: 13 GVRELSRKLIIVSGEDRISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGE 72
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF A PGEMVGALAAQSLG
Sbjct: 73 VEQRFNSAIAQPGEMVGALAAQSLG 97
>gi|13094415|gb|AAK11890.1| RNA polymerase II largest subunit [Glomeris marginata]
Length = 91
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 63/72 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K ++V GED+LSKQANENATLLF CL+R+TLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRDLAKKIIVVVGEDKLSKQANENATLLFDCLLRATLCTKQVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|50346879|gb|AAT75146.1| RNA polymerase 2 [Caenorhabditis japonica]
Length = 608
Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 204 GVRELSKKLIIVCGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 264 IETRFQQAIAQPGEMVGALAAQSLG 288
>gi|34597100|gb|AAQ77125.1| RNA polymerase II largest subunit [Rhysida nuda]
Length = 91
Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL++K VIV GED LS+ AN+NATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRELVKKIVIVQGEDHLSRMANDNATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|13094537|gb|AAK11942.1| RNA polymerase II largest subunit [Scolopendra viridis]
Length = 91
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL++K VIV GED LS+ ANENATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRELVKKIVIVQGEDPLSRMANENATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|356605948|gb|AET25005.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 16
KK-2011]
Length = 613
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 204 GVRDLSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 264 IETRFQQAIAQPGEMVGALAAQSLG 288
>gi|356605946|gb|AET25004.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 17
KK-2011]
Length = 623
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 211 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKLCTVKKLNTEAFDWLLGE 270
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 271 IETRFQQAIAQPGEMVGALAAQSLG 295
>gi|157841388|gb|ABV83148.1| RNA polymerase 2 [Panagrellus redivivus]
Length = 636
Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L ++ VIV+G D++S+QA ENATLL L+RST TK VAE Y+L++EAFEW++GE
Sbjct: 222 GVRKLGDRLVIVSGTDKISRQAQENATLLMNILLRSTFATKQVAEVYKLTNEAFEWIIGE 281
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVG LAAQSLG
Sbjct: 282 IESRFNQAIVQPGEMVGPLAAQSLG 306
>gi|449687727|ref|XP_002164354.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform
1, partial [Hydra magnipapillata]
Length = 1595
Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/84 (61%), Positives = 70/84 (83%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L ++ ++V GED+LSK+A NAT+LFQ +RSTLC+K V E +RL+SEAF+WL+GE+
Sbjct: 568 IKDLTKRLLVVKGEDKLSKEAQLNATMLFQIHLRSTLCSKRVIEEFRLTSEAFDWLLGEV 627
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF AQ PGEMVGALAAQSLG
Sbjct: 628 ESRFNLAQAQPGEMVGALAAQSLG 651
>gi|72187100|gb|AAC03141.2| RNA polymerase II largest subunit [Scutigera coleoptrata]
Length = 582
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED++SKQANENATLLF LVRSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 511 GTRELSKKIIIVQGEDRISKQANENATLLFDALVRSTLCTKRVAEEFRLSSEAFEWLLGE 570
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 571 IETRFQQSQVQP 582
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L+++ ++V G D+LS +A NATLL+QCL+RSTL TK V E++ L+++AFEW++GE
Sbjct: 930 GVKLLIDRLIVVRGSDKLSNEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ AQ APGEMVG +AAQS+G
Sbjct: 990 IETRFQTAQVAPGEMVGTVAAQSIG 1014
>gi|356605934|gb|AET24998.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 15
KK-2011]
Length = 614
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 206 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTTSKLNTEAFDWLLGE 265
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQ A PGEMVGALAAQSLG
Sbjct: 266 IESRFQSAIAQPGEMVGALAAQSLG 290
>gi|356605950|gb|AET25006.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 5
KK-2011]
Length = 614
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 215 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 274
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ A PGEMVGALAAQSLG
Sbjct: 275 IETRFQSAIAQPGEMVGALAAQSLG 299
>gi|157841422|gb|ABV83170.1| RNA polymerase 2 [Caenorhabditis sp. JU727]
Length = 620
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 221 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ A PGEMVGALAAQSLG
Sbjct: 281 IETRFQSAIAQPGEMVGALAAQSLG 305
>gi|13094401|gb|AAK11884.1| RNA polymerase II largest subunit [Craterostigmus tasmanianus]
Length = 222
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 63/72 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED+LSKQANENATLLF CL+RSTLCTK VAE +RLS+E+FEWL+GE
Sbjct: 151 GVRELSKKIIIVVGEDRLSKQANENATLLFNCLLRSTLCTKRVAEEFRLSAESFEWLLGE 210
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 211 IETRFQQSQVQP 222
>gi|34597036|gb|AAQ77093.1| RNA polymerase II largest subunit [Cormocephalus monteithi]
Length = 91
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRZL++K VIV GED LS+ ANENATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRZLVKKIVIVQGEDPLSRLANENATLLFDCLLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|13111549|gb|AAK12369.1| RNA polymerase II largest subunit [Alitta virens]
Length = 108
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL +K IV GED+LS +AN NAT+L LVRS LC + V E+ RLSSEAFEWL+GE
Sbjct: 20 GIRELSKKFCIVKGEDKLSVKANVNATMLMNILVRSRLCARTVIEDDRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVG LAAQSLG
Sbjct: 80 IESRFNQAMVTPGEMVGPLAAQSLG 104
>gi|6624241|dbj|BAA88485.1| RNA polymerase II largest subunit [Lethenteron reissneri]
Length = 595
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L ++ +IV GED LS+QA ENATLL C VRSTLC + V E +RLS +AFEWL+GE
Sbjct: 511 GVQDLSKRLMIVKGEDPLSRQAQENATLLLNCHVRSTLCARRVTEEFRLSLQAFEWLLGE 570
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF A PGEMVGALAAQSLG
Sbjct: 571 IEARFNYAIVHPGEMVGALAAQSLG 595
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 56/91 (61%), Positives = 71/91 (78%), Gaps = 1/91 (1%)
Query: 19 IIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAF 78
+ GL+ G EL +K VIV G+D LS+QA +NATLLF +RSTLC+K + E +RLS+EAF
Sbjct: 916 VFGLS-GTHELSKKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAF 974
Query: 79 EWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+WL+GEIE +F Q+ PGEMVGALAAQSLG
Sbjct: 975 DWLLGEIETKFNQSIAHPGEMVGALAAQSLG 1005
>gi|157841450|gb|ABV83188.1| RNA polymerase 2 [Cuticonema vivipara]
Length = 407
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L + VIV+GED++S+QA NATLL L+RSTLC+K +AE ++L++EAFEWL+GE
Sbjct: 221 GVKDLTSRLVIVSGEDKISQQAQYNATLLMNILLRSTLCSKRLAEKHKLNTEAFEWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F QA PGEMVGALAAQSLG
Sbjct: 281 IETKFNQAIAQPGEMVGALAAQSLG 305
>gi|157841440|gb|ABV83182.1| RNA polymerase 2 [Rhabditoides regina]
Length = 426
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR + +K VIV+G+D++SKQA NATLL L+RSTLC+K +AE ++L+ E FEWL+GE
Sbjct: 13 GVRNVSKKLVIVSGDDRISKQAQYNATLLMNILIRSTLCSKQMAEKHKLNEEGFEWLLGE 72
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQ A PGEMVGALAAQSLG
Sbjct: 73 IETRFQLAIAQPGEMVGALAAQSLG 97
>gi|157841370|gb|ABV83139.1| RNA polymerase 2 [Oscheius dolichuroides]
Length = 629
Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats.
Identities = 57/90 (63%), Positives = 69/90 (76%), Gaps = 2/90 (2%)
Query: 22 LNI--GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
LN+ GVR L EK +IV G+D++SKQA NATLL L+RSTLC K +A ++L+ EAFE
Sbjct: 219 LNVIRGVRSLSEKLIIVGGDDRISKQAQYNATLLMNILLRSTLCAKKMATTHKLNQEAFE 278
Query: 80 WLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
WL+GEIE RF+ A PGEMVGALAAQSLG
Sbjct: 279 WLLGEIETRFKAAIAQPGEMVGALAAQSLG 308
>gi|825713|emb|CAA52862.1| RNA polymerase II largest subunit [Homo sapiens]
Length = 1970
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+ L+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDLLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>gi|339252982|ref|XP_003371714.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
gi|316967997|gb|EFV52341.1| DNA-directed RNA polymerase II subunit RPB1 [Trichinella spiralis]
Length = 1816
Score = 115 bits (287), Expect = 4e-24, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L E+ +IV G+D +SKQA NATLLF C++RSTL +K +AE ++L+ EAFEW++GE
Sbjct: 994 GVRSLSERLIIVKGDDPISKQAQHNATLLFNCMLRSTLSSKRLAEEFKLNHEAFEWILGE 1053
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF AQ PGEMVGAL+A SLG
Sbjct: 1054 VETRFNLAQVQPGEMVGALSALSLG 1078
>gi|34597048|gb|AAQ77099.1| RNA polymerase II largest subunit [Glomeridesmus trinidadensis]
Length = 91
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 63/72 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K ++V GED+LSKQANENATLLF CL+RSTLC+K V+E +RLS+EAFEWL+GE
Sbjct: 20 GVRDLAKKIIVVVGEDKLSKQANENATLLFDCLLRSTLCSKRVSEEFRLSAEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|356605936|gb|AET24999.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 6
KK-2011]
Length = 577
Score = 115 bits (287), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 197 GVRELSKKLIIVCGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSEKLNTEAFDWLLGE 256
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 257 IESRFMQAIAQPGEMVGALAAQSLG 281
>gi|355712716|gb|AES04442.1| polymerase II polypeptide A, 220kDa [Mustela putorius furo]
Length = 521
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/82 (67%), Positives = 67/82 (81%)
Query: 28 ELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIEN 87
EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEIE+
Sbjct: 1 ELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIES 60
Query: 88 RFQQAQCAPGEMVGALAAQSLG 109
+F QA PGEMVGALAAQSLG
Sbjct: 61 KFNQAIAHPGEMVGALAAQSLG 82
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L K VIV G+D LS+QA +NATLLF +RSTLC+K + E +RLS+EAF+WL+GE
Sbjct: 1010 GVHDLSRKLVIVNGDDPLSRQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEMVGALAAQSLG
Sbjct: 1070 IETKFNQSIAHPGEMVGALAAQSLG 1094
>gi|50346887|gb|AAT75150.1| RNA polymerase 2 [Caenorhabditis sp. DF5070]
Length = 606
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 204 GVRELSKKLVIVGGSDDISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF QA PGEMVGALAAQSLG
Sbjct: 264 VESRFMQAIAQPGEMVGALAAQSLG 288
>gi|50346885|gb|AAT75149.1| RNA polymerase 2 [Caenorhabditis drosophilae]
Length = 633
Score = 114 bits (286), Expect = 5e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 220 GVRELSKKLVIVGGSDDISKQAQYNATLLMNILLRSTLCTKKLCTSSKLNTEAFDWLLGE 279
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF QA PGEMVGALAAQSLG
Sbjct: 280 VESRFMQAIAQPGEMVGALAAQSLG 304
>gi|38232341|gb|AAR15006.1| RNA polymerase II largest subunit [Orchesella imitari]
Length = 91
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/72 (76%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV LL+KCV+VAGED+LS ANENATLLF+CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVECLLKKCVVVAGEDKLSIMANENATLLFRCLIRSTLCTKRVAEEFRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFLQAQVQP 91
>gi|356605938|gb|AET25000.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 13
KK-2011]
Length = 623
Score = 114 bits (286), Expect = 6e-24, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL +K VIV G+D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 215 GIRELSKKLVIVCGDDDISKQAQYNATLLMNILLRSTLCTKKLCSSSKLNTEAFDWLLGE 274
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF QA PGEMVGALAAQSLG
Sbjct: 275 VESRFMQAIAQPGEMVGALAAQSLG 299
>gi|31127018|gb|AAF26632.2|AF138982_1 RNA polymerase II largest subunit [Hanseniella sp. 'Han']
Length = 468
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 53/69 (76%), Positives = 61/69 (88%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV GED++SKQANENATLLF CL+RSTLCTK VAE +RL++EAFEWL+GE
Sbjct: 397 GVRELTKKIVIVVGEDRISKQANENATLLFNCLLRSTLCTKRVAEEFRLTTEAFEWLLGE 456
Query: 85 IENRFQQAQ 93
IE RFQQA
Sbjct: 457 IETRFQQAH 465
>gi|390363773|ref|XP_003730447.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Strongylocentrotus purpuratus]
Length = 1880
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K VIV GED +S+QA ENAT L CL+RSTL + VA+ ++LS E+FEWL+GE
Sbjct: 1012 GVRDLKKKLVIVKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+ GEMVGALAAQSLG
Sbjct: 1072 IETRFNQSLAMAGEMVGALAAQSLG 1096
>gi|115910670|ref|XP_788781.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like isoform 3
[Strongylocentrotus purpuratus]
Length = 1921
Score = 114 bits (285), Expect = 7e-24, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K VIV GED +S+QA ENAT L CL+RSTL + VA+ ++LS E+FEWL+GE
Sbjct: 1012 GVRDLKKKLVIVKGEDAISRQAQENATYLMNCLIRSTLSSTRVAQEHKLSPESFEWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+ GEMVGALAAQSLG
Sbjct: 1072 IETRFNQSLAMAGEMVGALAAQSLG 1096
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 51/84 (60%), Positives = 69/84 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L+++ V+V G D+LS +A NATLL+QCL+RSTL TK V E++ L+++AFEW++GE
Sbjct: 932 GVKLLIDRLVVVRGSDKLSNEAQLNATLLYQCLLRSTLSTKRVLEDFHLNAQAFEWILGE 991
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE RFQ AQ APGEMVG +AAQS+
Sbjct: 992 IETRFQTAQVAPGEMVGTVAAQSI 1015
>gi|78190537|gb|ABB29590.1| DNA-directed RNA polymerase II largest subunit [Platynereis
dumerilii]
Length = 248
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL +K +IV GED+LS AN NAT+L L+RS LC + + E+ RLSSEAFEWL+GE
Sbjct: 154 GIRELSKKFLIVKGEDKLSIDANINATMLMNILIRSRLCARTIIEDDRLSSEAFEWLLGE 213
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF QA PGEMVG LAAQSLG
Sbjct: 214 VESRFNQAMVTPGEMVGPLAAQSLG 238
>gi|50346863|gb|AAT75141.1| RNA polymerase 2 [Caenorhabditis angaria]
Length = 601
Score = 114 bits (285), Expect = 8e-24, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 204 GVRELSKKLIIVCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGE 263
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 264 IESRFMQAIAQPGEMVGALAAQSLG 288
>gi|356605940|gb|AET25001.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 12
KK-2010]
Length = 604
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 202 GVRELSKKLIIVCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGE 261
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 262 IESRFMQAIAQPGEMVGALAAQSLG 286
>gi|262303437|gb|ACY44311.1| RNA polymerase largest subunit [Daphnia magna]
Length = 654
Score = 114 bits (284), Expect = 1e-23, Method: Composition-based stats.
Identities = 50/65 (76%), Positives = 59/65 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL +CV+V GED+LS QAN+NATLLFQCL+RSTLC+K +AE YRLSSEAFEWL+GE
Sbjct: 443 GVRDLLSRCVVVVGEDKLSVQANQNATLLFQCLIRSTLCSKRLAEEYRLSSEAFEWLIGE 502
Query: 85 IENRF 89
IE RF
Sbjct: 503 IETRF 507
>gi|13094464|gb|AAK11911.1| RNA polymerase II largest subunit [Orthoporus ornata]
Length = 222
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL ++ VIV GED LSKQANENATLLF CL++STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 151 GVRELSKRLVIVPGEDSLSKQANENATLLFNCLLQSTLCTKRVAEEFRLSTEAFEWLLGE 210
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 211 IETRFNQAQXQP 222
>gi|291220940|ref|XP_002730482.1| PREDICTED: DNA-directed RNA polymerase II A-like [Saccoglossus
kowalevskii]
Length = 1932
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ EL +K VIV G+D +S+QA ENATL L+R+TLC++ E +RLS+EAFEWL+GE
Sbjct: 1013 GLSELTKKLVIVKGDDSISRQAQENATLNMNILIRATLCSRRATEEFRLSAEAFEWLLGE 1072
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQ+Q GEM G LAAQSLG
Sbjct: 1073 IETRFQQSQAQAGEMCGPLAAQSLG 1097
>gi|358337430|dbj|GAA28785.2| DNA-directed RNA polymerase II subunit RPB1 [Clonorchis sinensis]
Length = 1877
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 53/84 (63%), Positives = 65/84 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE ++ V+V G+D+LS++AN NATLL L+RS+LC K V YRLS EA +W++GEI
Sbjct: 973 VRETCKRLVVVPGDDRLSREANANATLLMGALIRSSLCAKKVINEYRLSYEALDWVLGEI 1032
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RFQQAQ PGEMVGALAAQSLG
Sbjct: 1033 RARFQQAQIHPGEMVGALAAQSLG 1056
>gi|13094436|gb|AAK11899.1| RNA polymerase II largest subunit [Ophyiulus pilosus]
Length = 91
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED LSKQANENATLLF+CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELCQKIIIVPGEDALSKQANENATLLFKCLLHSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 80 VETRFNQAQAQP 91
>gi|31126959|gb|AAC03138.2| RNA polymerase II largest subunit [Narceus americanus]
Length = 227
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K VIV GED LSKQANENATLLF CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 156 GVRELSRKLVIVPGEDALSKQANENATLLFNCLLHSTLCTKRVAEEFRLSTEAFEWLLGE 215
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 216 VETRFNQAQVQP 227
>gi|38232281|gb|AAR14976.1| RNA polymerase II largest subunit [Lepas anserifera]
Length = 91
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ELL +CV+V GED+LSK AN NAT+LF CLVRSTLCT+ VAE YRLSSEAFEWL+GE
Sbjct: 20 GVEELLSRCVVVRGEDRLSKAANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
I+ RF QA P
Sbjct: 80 IDTRFHQAMVNP 91
>gi|34597130|gb|AAQ77140.1| RNA polymerase II largest subunit [Tuoba laticeps]
Length = 91
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K ++V G+D LS+QANENATLLF CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELSSKIIVVPGDDYLSRQANENATLLFNCLLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQ AQ P
Sbjct: 80 IETRFQHAQVQP 91
>gi|13094452|gb|AAK11906.1| RNA polymerase II largest subunit [Nemasoma varicorne]
Length = 91
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K ++V GED LSKQANENATLLF+CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELCQKIIVVPGEDGLSKQANENATLLFKCLIHSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 80 VETRFNQAQAQP 91
>gi|38232357|gb|AAR15014.1| RNA polymerase II largest subunit [Paralamyctes sp. JCR-2003]
Length = 91
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED LS+QANENATLLF L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELSKKLIIVPGEDPLSRQANENATLLFNSLLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|31127048|gb|AAC03137.3| RNA polymerase II largest subunit [Mastigoproctus giganteus]
Length = 887
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/72 (72%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV GED+LS QANENATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 651 GVEDLVKKLIIVPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGE 710
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 711 IDTRFQQAQVQP 722
>gi|38232243|gb|AAR14957.1| RNA polymerase II largest subunit [Chthamalus fragilis]
Length = 91
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL +CV+V GED+LSK AN NAT+LF CLVRSTLCT+ VAE YRLSSEAFEWL+GE
Sbjct: 20 GVRNLLARCVVVRGEDRLSKTANANATILFSCLVRSTLCTRRVAEEYRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RF QA P
Sbjct: 80 IDTRFHQAMVNP 91
>gi|356605928|gb|AET24995.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
KK-2011]
Length = 492
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G D +SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 218 GVRELSKKLVIVCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGE 277
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ PGEMVGALAAQSLG
Sbjct: 278 IESRFLQSIAQPGEMVGALAAQSLG 302
>gi|356605954|gb|AET25008.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 8
KK-2011]
Length = 604
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+R+L +K +IV G D +SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 201 GIRDLSKKLIIVCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTSSKLNTEAFDWLLGE 260
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 261 IESRFMQAIAQPGEMVGALAAQSLG 285
>gi|50346883|gb|AAT75148.1| RNA polymerase 2 [Caenorhabditis sp. SB341]
Length = 622
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K +IV+G D +SKQA NATLL L+RSTLC+K +A + +L++EAF+WL+GE
Sbjct: 221 GVREVSKKLIIVSGSDDISKQAQYNATLLMNILLRSTLCSKKMATSAKLNTEAFDWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF Q+ PGEMVGALAAQSLG
Sbjct: 281 VESRFMQSIAQPGEMVGALAAQSLG 305
>gi|38232325|gb|AAR14998.1| RNA polymerase II largest subunit [Neogonodactylus oerstedii]
Length = 91
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/71 (74%), Positives = 62/71 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ELL KCVIVAGED++S QANENATLLF+CLVRSTLCTK VAE Y+L++EA+ WL+GE
Sbjct: 20 GVNELLRKCVIVAGEDRISIQANENATLLFRCLVRSTLCTKKVAEEYKLTTEAYNWLIGE 79
Query: 85 IENRFQQAQCA 95
IE+RF QA A
Sbjct: 80 IESRFNQAIVA 90
>gi|13094459|gb|AAK11909.1| RNA polymerase II largest subunit [Oxidus gracilus]
Length = 91
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K ++V GED LSKQANENATLLF CL+RSTLCTK VAE +RLS EAFEWL+GE
Sbjct: 20 GVRELSKKIIVVPGEDNLSKQANENATLLFNCLLRSTLCTKRVAEEFRLSWEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 80 VETRFNQAQAQP 91
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like, partial
[Takifugu rubripes]
Length = 1628
Score = 112 bits (281), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G +L +K VIV G+D LSKQA +NATLLF +RSTLC+K + E +RLS+EAF+WL+GE
Sbjct: 1010 GTHDLSKKLVIVNGDDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLSTEAFDWLLGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F + PGEMVGALAAQSLG
Sbjct: 1070 IETKFNHSIAHPGEMVGALAAQSLG 1094
>gi|13094396|gb|AAK11882.1| RNA polymerase II largest subunit [Cylindroiulus punctatus]
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K ++V GED LSKQANENATLLF+CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELCQKIIMVPGEDGLSKQANENATLLFKCLIHSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 80 VETRFNQAQAQP 91
>gi|13094370|gb|AAK11871.1| RNA polymerase II largest subunit [Abacion magnum]
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL K VIV GED LSKQANENATLLF CL+RSTLCT+ VA+ +RLS+EAFEWL+GE
Sbjct: 20 GVKELSXKIVIVPGEDALSKQANENATLLFNCLIRSTLCTRRVADEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|72255755|gb|AAK12725.2| RNA polymerase II largest subunit [Hadrurus arizonensis]
Length = 543
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K V+V GED+LS QANENATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 472 GVEELVKKLVVVPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGE 531
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 532 IETRFHQAQVQP 543
>gi|1916670|gb|AAB51213.1| large subunit RNA polymerase II, partial [unidentified nematode]
Length = 633
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/85 (63%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G D +SKQA NATLL L+RS LCTK + + +L++EAF+WL+GE
Sbjct: 217 GVRELSKKLIIVCGNDDISKQAQYNATLLMNILLRSALCTKKMCTSSKLNTEAFDWLLGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGALAAQSLG
Sbjct: 277 IESRFMQAIAQPGEMVGALAAQSLG 301
>gi|13123194|gb|AAK12816.1| RNA polymerase II largest subunit [Promitobates ornatus]
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IGV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 IGVEKLIKKLVIVPGEDRLSVQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|13122988|gb|AAK12728.1| RNA polymerase II largest subunit [Heterophrynus sp. 'Het']
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K +IV GED+LS QAN+NATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEELVKKLIIVPGEDRLSIQANDNATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|34597060|gb|AAQ77105.1| RNA polymerase II largest subunit [Phryssonotus sp. 'jump']
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV GED LSKQAN+NATLL CL+RSTLC+K V E +RLS EAFEWL+GE
Sbjct: 20 GVRELTKKLVIVVGEDSLSKQANDNATLLMNCLIRSTLCSKRVGEEFRLSLEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVHP 91
>gi|356605942|gb|AET25002.1| RNA polymerase II largest subunit, partial [Caenorhabditis sp. 20
KK-2011]
Length = 505
Score = 112 bits (280), Expect = 3e-23, Method: Composition-based stats.
Identities = 55/85 (64%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G D +SKQA NATLL L+RSTLCTK + +L++EAF+WL+GE
Sbjct: 91 GVRELSKKLVIVCGNDDISKQAQYNATLLMNILLRSTLCTKKMCTTAKLNTEAFDWLLGE 150
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ PGEMVGALAAQSLG
Sbjct: 151 IESRFLQSIAQPGEMVGALAAQSLG 175
>gi|13123044|gb|AAK12752.1| RNA polymerase II largest subunit [Phrynus marginemaculatus]
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL+ K VIV GED+LS QAN+NATLLF+ L+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEELVRKLVIVPGEDRLSIQANDNATLLFRALLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|13123215|gb|AAK12825.1| RNA polymerase II largest subunit [Sodreana sodreana]
Length = 91
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/73 (71%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IGV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 IGVEKLIKKLVIVPGEDRLSIQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|157841443|gb|ABV83184.1| RNA polymerase 2 [Pelodera punctata]
Length = 363
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/76 (68%), Positives = 61/76 (80%)
Query: 34 VIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQ 93
+IV GED++SKQA NATLL L+RSTLC+K +AE YRL+ E FEWL+GEIE+RF QA
Sbjct: 1 IIVCGEDRISKQAQYNATLLMNILIRSTLCSKQMAEKYRLNEEGFEWLLGEIEHRFNQAV 60
Query: 94 CAPGEMVGALAAQSLG 109
PGEMVGALA QSLG
Sbjct: 61 AQPGEMVGALAXQSLG 76
>gi|157841474|gb|ABV83203.1| RNA polymerase 2 [Oscheius tipulae]
Length = 446
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L +K +IV GED++S+QA NATLL L+RSTLC+K +A ++L+ EAF+WL+GE
Sbjct: 43 GVKNLSDKLIIVGGEDRISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGE 102
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+ A PGEMVGALAAQSLG
Sbjct: 103 IETRFKSAIAQPGEMVGALAAQSLG 127
>gi|157841368|gb|ABV83138.1| RNA polymerase 2 [Oscheius tipulae]
Length = 629
Score = 112 bits (279), Expect = 4e-23, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L +K +IV GED++S+QA NATLL L+RSTLC+K +A ++L+ EAF+WL+GE
Sbjct: 221 GVKNLSDKLIIVGGEDRISRQAQFNATLLMNILLRSTLCSKKMATTHKLNQEAFDWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF+ A PGEMVGALAAQSLG
Sbjct: 281 IETRFKSAIAQPGEMVGALAAQSLG 305
>gi|13094509|gb|AAK11930.1| RNA polymerase II largest subunit [Sphaerotherium punctulatum]
Length = 91
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL++K VIV GED+LSKQANENATLLF CL+ STL T+ V+E YRLSSEAFEWL+GE
Sbjct: 20 GLRELVKKIVIVPGEDKLSKQANENATLLFNCLLXSTLSTRQVSEEYRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IEXRFQQSQXQP 91
>gi|13123180|gb|AAK12810.1| RNA polymerase II largest subunit [Pseudobiantes japonicus]
Length = 91
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC + V+E YRLS+EAFEWL+G
Sbjct: 19 LGVEKLIKKLVIVPGEDRLSIQANDNATLLFRSLLRSTLCARRVSEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQC P
Sbjct: 79 EIETRFQQAQCQP 91
>gi|34597042|gb|AAQ77096.1| RNA polymerase II largest subunit [Docodesmus trinidadensis]
Length = 91
Score = 112 bits (279), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K ++V G+D LSKQANENATLLF CL+RSTLCTK VAE +RLS EAFEWL+GE
Sbjct: 20 GVKELTKKIIVVPGDDNLSKQANENATLLFNCLLRSTLCTKRVAEEFRLSWEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQAQP 91
>gi|13122957|gb|AAK12715.1| RNA polymerase II largest subunit [Discocyrtus areolatus]
Length = 91
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 VGVEKLIKKLVIVPGEDRLSVQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|13094551|gb|AAK11948.1| RNA polymerase II largest subunit [Pseudopolydesmus serratus]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +IV G+D LSKQANENATLLF CL+RSTLCTK VAE +RLS EAFEW++GE
Sbjct: 20 GVKELTKKIIIVPGDDNLSKQANENATLLFNCLLRSTLCTKRVAEEFRLSCEAFEWILGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQAQP 91
>gi|13094481|gb|AAK11918.1| RNA polymerase II largest subunit [Proteroiulus fuscus]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K ++V GED LS+QANENATLLF+CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELCQKIIVVPGEDGLSRQANENATLLFKCLIHSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF QAQ P
Sbjct: 80 VETRFNQAQAQP 91
>gi|13123173|gb|AAK12807.1| RNA polymerase II largest subunit [Progonyleptoidellus striatus]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 VGVEKLIKKLVIVPGEDRLSIQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|38232255|gb|AAR14963.1| RNA polymerase II largest subunit [Eurytemora affinis]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 62/71 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G R LL+KC+IV G+D+LS QAN+NAT+LFQCLVRSTLCTK+VAE ++LS EAF+WL+GE
Sbjct: 20 GTRXLLKKCIIVPGDDRLSLQANDNATILFQCLVRSTLCTKMVAETHKLSEEAFDWLLGE 79
Query: 85 IENRFQQAQCA 95
IE +F Q+Q A
Sbjct: 80 IETKFAQSQVA 90
>gi|13094523|gb|AAK11936.1| RNA polymerase II largest subunit [Scolopocryptops sexspinosus]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K ++V G+D LS QAN+NATLLF CL+RSTLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GVRELSKKIIVVPGDDPLSYQANDNATLLFNCLLRSTLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IEARFQQSQVQP 91
>gi|6716474|gb|AAF26635.1|AF138985_1 RNA polymerase II largest subunit [Hutchinsoniella macracantha]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LL KC IV+GEDQLS QAN+NATLLFQCL+RSTLC++ VAE +RLS+ AFEWL+GE
Sbjct: 20 GVKTLLTKCEIVSGEDQLSIQANQNATLLFQCLIRSTLCSRRVAEEFRLSAAAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
+E +F QAQ AP
Sbjct: 80 VETKFLQAQVAP 91
>gi|13094469|gb|AAK11913.1| RNA polymerase II largest subunit [Uroblaniulus canadensis]
Length = 222
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G +EL +K ++V GED LSKQANENATLLF+CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 151 GAKELCQKIIVVPGEDGLSKQANENATLLFKCLIHSTLCTKRVAEEFRLSTEAFEWLLGE 210
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 211 IETRFNQAQAQP 222
>gi|34597024|gb|AAQ77087.1| RNA polymerase II largest subunit [Australobius scabrior]
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED LSKQANENATLL CL+RSTLCTK +AE YRLS+EAFEWL+GE
Sbjct: 20 GCRELSKKLIIVPGEDPLSKQANENATLLINCLLRSTLCTKKMAEEYRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|13094544|gb|AAK11945.1| RNA polymerase II largest subunit [Symphylella sp. 'Sym']
Length = 91
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV G+D++SKQAN+NATLLF L+RSTLC++ VAE YRL+SEAFEWL+GE
Sbjct: 20 GVRELTKKIVIVGGDDRISKQANDNATLLFNGLLRSTLCSRRVAEEYRLTSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQVQP 91
>gi|13094500|gb|AAK11926.1| RNA polymerase II largest subunit [Pachymerium ferrugineum]
Length = 238
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV GED LS QANENATLLF CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 167 GVRELSSKIIIVPGEDYLSCQANENATLLFNCLLRSTLCTKRVAEEFRLSTEAFEWLLGE 226
Query: 85 IENRFQQAQCAP 96
IE RFQ +Q P
Sbjct: 227 IETRFQHSQVQP 238
>gi|13123138|gb|AAK12792.1| RNA polymerase II largest subunit [Gonyleptes fragilis]
Length = 91
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 MGVEKLIKKLVIVPGEDRLSVQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|38232391|gb|AAR15031.1| RNA polymerase II largest subunit [Trachyiulus nordquisti]
Length = 91
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/72 (75%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL + VIV GED LSKQANENATLLF CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELSRRLVIVPGEDTLSKQANENATLLFNCLLLSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|13094420|gb|AAK11892.1| RNA polymerase II largest subunit [Geophilus vittatus]
Length = 222
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV GED LS QANENATLLF CL+RSTLCTK VAE +RLS+EAF+WL+GE
Sbjct: 151 GVRELSSKLIIVPGEDYLSCQANENATLLFNCLLRSTLCTKRVAEEFRLSTEAFDWLLGE 210
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 211 IETRFQQSQVQP 222
>gi|13094382|gb|AAK11876.1| RNA polymerase II largest subunit [Cryptops hyalinus]
Length = 222
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV GED LS QAN+NATLLF CL+RSTLCT+ VAE +RLSSEAFEWL+GE
Sbjct: 151 GVRELGKKIIIVPGEDPLSCQANKNATLLFNCLLRSTLCTRRVAEEFRLSSEAFEWLLGE 210
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 211 IETRFQQSQVQP 222
>gi|13123166|gb|AAK12804.1| RNA polymerase II largest subunit [Proscotolemon sauteri]
Length = 91
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/73 (69%), Positives = 63/73 (86%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+G
Sbjct: 19 LGVEKLIKKLVIVPGEDRLSIQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIG 78
Query: 84 EIENRFQQAQCAP 96
EIE RFQQAQ P
Sbjct: 79 EIETRFQQAQVQP 91
>gi|50346881|gb|AAT75147.1| RNA polymerase 2 [Caenorhabditis plicata]
Length = 636
Score = 110 bits (276), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/85 (60%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ K +IV+G D +S+QA NATLL L+RSTLC+K + +L++EAF+WL+GE
Sbjct: 221 GVREISSKLIIVSGNDDISRQAQYNATLLMNILLRSTLCSKKLCTTSKLNTEAFDWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+RF QA PGEMVGALAAQSLG
Sbjct: 281 VESRFNQAIAQPGEMVGALAAQSLG 305
>gi|13122917|gb|AAK12698.1| RNA polymerase II largest subunit [Caeculus sp. 'Cae']
Length = 91
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K VIV GED+LS QAN+NATLLF+ L+RS LCTK VAE YRL+SEAFEWL+GE
Sbjct: 20 GVEDLVKKLVIVPGEDRLSIQANDNATLLFRALLRSMLCTKKVAEEYRLTSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQAQP 91
>gi|13122943|gb|AAK12709.1| RNA polymerase II largest subunit [Centruroides sculpturatus]
Length = 91
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K V+V GED+LS QANENATLLF+ L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVEELVKKLVVVPGEDRLSVQANENATLLFRALLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFHQAQVQP 91
>gi|13094429|gb|AAK11896.1| RNA polymerase II largest subunit [Hiltonius sp. 'Hil']
Length = 91
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV GED LSKQANENATLLF CL+ STLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRELSRKLIIVPGEDALSKQANENATLLFNCLLHSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
E RF QAQ P
Sbjct: 80 XETRFNQAQVQP 91
>gi|262303427|gb|ACY44306.1| RNA polymerase largest subunit [Ammothea hilgendorfi]
Length = 654
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 52/78 (66%), Positives = 62/78 (79%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L K VIV GED+LS QANENATLLFQ ++RSTLCTK VAE +RLS+EAF+WL+GE
Sbjct: 443 GVEHLASKLVIVPGEDRLSLQANENATLLFQAMLRSTLCTKKVAEEFRLSTEAFDWLLGE 502
Query: 85 IENRFQQAQCAPGEMVGA 102
++ RFQQAQ +P V A
Sbjct: 503 VDARFQQAQASPXAGVSA 520
>gi|308198333|ref|XP_001386996.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
gi|149388976|gb|EAZ62973.2| DNA-directed RNA polymerase II largest subunit (RNA polymerase II
subunit 1) (B220) [Scheffersomyces stipitis CBS 6054]
Length = 1739
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/100 (51%), Positives = 72/100 (72%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GVR L EK ++V G+ +L K+A NATLLFQCLVRS L ++ V E
Sbjct: 975 GRYKASDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVRSRLASRRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +FEW+VGEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRSSFEWVVGEIETQFQKSIVHPGEMVGVIAAQSIG 1074
>gi|157841364|gb|ABV83136.1| RNA polymerase 2 [Rhabditis sp. SB347]
Length = 621
Score = 110 bits (275), Expect = 1e-22, Method: Composition-based stats.
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV+GED++SKQA NATLL L+RSTLC+K +A Y+L+SEAFEWL+GE
Sbjct: 221 GVRELSSKLIIVSGEDRISKQAQYNATLLMNILIRSTLCSKKMASTYKLNSEAFEWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF+QA GALAAQSLG
Sbjct: 281 VETRFKQAIAXXXXXXGALAAQSLG 305
>gi|34597136|gb|AAQ77143.1| RNA polymerase II largest subunit [Theatops posticus]
Length = 91
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV G+D LS QANENATLLF CL+RSTLCTK +AE +RLSSEA+EWL+GE
Sbjct: 20 GVRELSKKLIIVTGDDPLSCQANENATLLFNCLLRSTLCTKRIAEEFRLSSEAYEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQVQP 91
>gi|13123159|gb|AAK12801.1| RNA polymerase II largest subunit [Laneosoares inermis]
Length = 91
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+GE
Sbjct: 20 GVEKLIKKLVIVPGEDRLSIQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|34597142|gb|AAQ77146.1| RNA polymerase II largest subunit [Zelanion antipodus]
Length = 91
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL K ++V G+D LS+QAN+NATLLF CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVSELASKIIVVPGDDYLSRQANDNATLLFDCLLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQVQP 91
>gi|38232299|gb|AAR14985.1| RNA polymerase II largest subunit [Loxothylacus texanus]
Length = 91
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL +C+IV GED LSK AN NAT+LF CL+RSTLCT+ V+E +RLSSEAFEWL+GE
Sbjct: 20 GVRALLARCIIVRGEDSLSKSANSNATILFSCLIRSTLCTRPVSEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RF QA P
Sbjct: 80 IDTRFHQAMAHP 91
>gi|353231921|emb|CCD79276.1| putative dna-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1900
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 65/84 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE ++ ++V G+D+LSK+AN NATLL L+R++LC K V +YRLS EA +W++GE+
Sbjct: 1018 VRETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEV 1077
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RFQQA PGEMVGALAAQSLG
Sbjct: 1078 RARFQQAHIHPGEMVGALAAQSLG 1101
>gi|256082852|ref|XP_002577666.1| DNA-directed RNA polymerase II largest subunit [Schistosoma
mansoni]
Length = 1785
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 65/84 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE ++ ++V G+D+LSK+AN NATLL L+R++LC K V +YRLS EA +W++GE+
Sbjct: 903 VRETCKRLIVVPGDDRLSKEANANATLLLSSLIRASLCAKKVIIDYRLSYEALDWVLGEV 962
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RFQQA PGEMVGALAAQSLG
Sbjct: 963 RARFQQAHIHPGEMVGALAAQSLG 986
>gi|13094476|gb|AAK11916.1| RNA polymerase II largest subunit [Pokabius bilabiatus]
Length = 91
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED LSKQANENATLL CL+RSTLCTK +AE +RLS+EAFEWL+GE
Sbjct: 20 GCRELSKKLIIVPGEDPLSKQANENATLLMNCLLRSTLCTKRMAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|13094377|gb|AAK11874.1| RNA polymerase II largest subunit [Bothropolys multidentatus]
Length = 91
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G REL +K +IV GED LSKQANENATLL CL+RSTLCTK +AE +RLS+EAFEWL+GE
Sbjct: 20 GCRELSKKLIIVPGEDPLSKQANENATLLINCLLRSTLCTKRMAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|13122976|gb|AAK12723.1| RNA polymerase II largest subunit [Epactiochernes tumidus]
Length = 91
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/72 (73%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV G D+LS QAN+NATLLF+ L+RSTLCTK VAE YRLSSEAFEWL+GE
Sbjct: 20 GVEELIKKLVIVQGNDRLSIQANDNATLLFRSLLRSTLCTKKVAEEYRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|262303425|gb|ACY44305.1| RNA polymerase largest subunit [Achelia echinata]
Length = 654
Score = 110 bits (274), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/78 (67%), Positives = 61/78 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L K +IV GED+LS QANENATLLFQ L+RSTLCTK VAE +RLS+EAF+WL+GE
Sbjct: 443 GVETLANKLLIVPGEDRLSLQANENATLLFQALLRSTLCTKKVAEEFRLSTEAFDWLLGE 502
Query: 85 IENRFQQAQCAPGEMVGA 102
I+ RFQQAQ P V A
Sbjct: 503 IDTRFQQAQVMPXAGVSA 520
>gi|34597054|gb|AAQ77102.1| RNA polymerase II largest subunit [Henicops maculatus]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL +K +IV GED+LS++AN+NATLLF CL+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVDELSKKLIIVQGEDELSQKANKNATLLFNCLLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|7107508|gb|AAC03134.2| RNA polymerase II largest subunit [Aphonopelma chalcodes]
Length = 240
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ A S R+I GV EL++K VIV GED+LS QANENAT+LF+ L+ STLCTK
Sbjct: 154 NTRAPTDLSPLRVIH---GVEELVKKLVIVPGEDRLSIQANENATILFRALLHSTLCTKR 210
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE +RLS+EAFEWL+GEI+ RFQQAQ P
Sbjct: 211 VAEEFRLSTEAFEWLLGEIDARFQQAQVQP 240
>gi|38232219|gb|AAR14945.1| RNA polymerase II largest subunit [Anopsobius neozelandicus]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED LSKQANENATLLF+ L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVRDLSKKLIIVPGEDPLSKQANENATLLFRALLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QA P
Sbjct: 80 IETRFVQAMVQP 91
>gi|13123070|gb|AAK12763.1| RNA polymerase II largest subunit [Sclerobunus robustus]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 5/87 (5%)
Query: 8 SPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLV 67
SPA S R+I +GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ V
Sbjct: 8 SPADLS--PLRVI---VGVEKLIKKLVIVPGEDRLSVQANDNATLLFRSLLRSTLCSRRV 62
Query: 68 AENYRLSSEAFEWLVGEIENRFQQAQC 94
AE YRLS+EAFEWL+GEIE RFQQAQ
Sbjct: 63 AEEYRLSTEAFEWLIGEIETRFQQAQV 89
>gi|13094408|gb|AAK11887.1| RNA polymerase II largest subunit [Globotherium sp. Glo2]
Length = 91
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 62/72 (86%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL++K VIV GED+LSKQAN+NATLLF CL+ STL T+ V+E YRLSSEAFEWL+GE
Sbjct: 20 GLRELVKKVVIVPGEDKLSKQANDNATLLFNCLLCSTLSTRQVSEEYRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQVQP 91
>gi|29539342|dbj|BAC67672.1| DNA-directed RNA polymerase II largest subunit [Cyanidioschyzon
merolae]
gi|449019055|dbj|BAM82457.1| RNA polymerase II largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1819
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL++CV+V G+D+LS++A NA LLF VR+ L TK V + +RL+S+AF WL+GE
Sbjct: 1003 GVRVLLQRCVVVPGDDELSREAQRNAVLLFAAHVRAELATKRVLQIHRLNSKAFAWLLGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF +A+ PGEMVGA+AAQSLG
Sbjct: 1063 IETRFVRARATPGEMVGAVAAQSLG 1087
>gi|31127046|gb|AAC03136.3| RNA polymerase II largest subunit [Limulus polyphemus]
Length = 778
Score = 109 bits (272), Expect = 3e-22, Method: Composition-based stats.
Identities = 54/90 (60%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S ++IG GV EL++K V+V GED+LS QAN+NAT+LF+ L+RSTLC K
Sbjct: 527 NQRAPTDLSPLKVIG---GVEELVKKLVVVPGEDRLSIQANDNATILFRALLRSTLCAKR 583
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE +RLSSE+F+WL+GEIE RFQQAQ P
Sbjct: 584 VAEEFRLSSESFQWLLGEIEARFQQAQVQP 613
>gi|38232329|gb|AAR15000.1| RNA polymerase II largest subunit [Nebalia hessleri]
Length = 91
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV LL+KC IV G+D++S+QANENATLLFQCLVRST CTK VAE YRL+ E+F WL+GE
Sbjct: 20 GVTVLLKKCNIVQGDDRISRQANENATLLFQCLVRSTFCTKKVAEEYRLTIESFNWLMGE 79
Query: 85 IENRFQQAQCAP 96
+ENRF QA +P
Sbjct: 80 VENRFNQAVASP 91
>gi|13122995|gb|AAK12731.1| RNA polymerase II largest subunit [Heterometrus spinifer]
Length = 91
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K V+V GED+LS QANENATLLF+ L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVEQLVKKLVVVPGEDRLSIQANENATLLFRALLRSTLCTKRVAEEFRLSAEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFHQAQVQP 91
>gi|34597066|gb|AAQ77108.1| RNA polymerase II largest subunit [Lamyctes fulvicornis]
Length = 91
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL +K +IV GED LSKQAN NATLLF L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVAELCKKVIIVPGEDHLSKQANHNATLLFNALLRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQ+Q P
Sbjct: 80 IDTRFQQSQVQP 91
>gi|13123208|gb|AAK12822.1| RNA polymerase II largest subunit [Scotolemon lespesi]
Length = 91
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/71 (71%), Positives = 61/71 (85%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC + VAE YRLSSEAFEWL+G
Sbjct: 19 VGVEKLIKKLVIVPGEDRLSLQANDNATLLFRSLLRSTLCXRRVAEEYRLSSEAFEWLIG 78
Query: 84 EIENRFQQAQC 94
EIE RFQQAQ
Sbjct: 79 EIETRFQQAQV 89
>gi|34597118|gb|AAQ77134.1| RNA polymerase II largest subunit [Stemmiulus insulanus]
Length = 91
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K ++V GED LSKQANENATLLF CL+RSTLCT VA+ +RLS+EAFEWL+GE
Sbjct: 20 GVRDLSKKIIVVPGEDALSKQANENATLLFNCLLRSTLCTCRVADEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|7107506|gb|AAC03135.2| RNA polymerase II largest subunit [Dysdera crocata]
Length = 240
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K IVAGED+LS QAN+NAT+LF+ L+ STLCTK VAE +RLS EAFEWL+GE
Sbjct: 169 GVDELVKKLTIVAGEDRLSVQANDNATILFRALLHSTLCTKRVAEEFRLSVEAFEWLLGE 228
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 229 IETRFQQAQVQP 240
>gi|13094516|gb|AAK11933.1| RNA polymerase II largest subunit [Orthocricus sp. 'Spi1']
Length = 91
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 52/72 (72%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G++EL K VIV GED LSKQANENATLL CL+ +TLCTK VAE +RLSSEAFEWL+GE
Sbjct: 20 GMKELSRKLVIVPGEDALSKQANENATLLINCLLHATLCTKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|1945435|gb|AAC49712.1| RNA polymerase II largest subunit [Spirogyra sp.]
Length = 613
Score = 108 bits (269), Expect = 5e-22, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ +L E+ +V G+D +S++A +NATL F CL+RST+ +K V ++YRL+ EAF+W++GE
Sbjct: 518 GMDKLQERLKVVVGDDHISREAQKNATLFFNCLLRSTMSSKQVLKDYRLNMEAFQWVIGE 577
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+Q APGEM+G +AAQS+G
Sbjct: 578 IEARFLQSQVAPGEMIGCVAAQSIG 602
>gi|13123201|gb|AAK12819.1| RNA polymerase II largest subunit [Sabacon imamurai]
Length = 91
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEDLVKKLVIVPGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|38232367|gb|AAR15019.1| RNA polymerase II largest subunit [Rhinotus purpureus]
Length = 91
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +V G+D LS+QANENATLLF L+RSTLCTK VAE +RLS+EAFEW++GE
Sbjct: 20 GVRELTRKVTVVPGDDNLSRQANENATLLFNSLLRSTLCTKRVAEEFRLSAEAFEWVLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|13123145|gb|AAK12795.1| RNA polymerase II largest subunit [Hesperonemastoma modestum]
Length = 91
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV +L++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLSSEAFE
Sbjct: 15 IRVTQGVEDLVKKLVIVPGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSSEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|6716493|gb|AAF26654.1|AF139004_1 RNA polymerase II largest subunit [Scutigerella sp. Scu2]
Length = 91
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED++SKQAN NATLLF L+RSTLC+K VAE +RL+SEAFEWL+GE
Sbjct: 20 GVRDLSKKIIIVVGEDRISKQANHNATLLFNSLLRSTLCSKRVAEEFRLTSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+ P
Sbjct: 80 IEARFQQSHVYP 91
>gi|38232225|gb|AAR14948.1| RNA polymerase II largest subunit [Allopauropus proximus]
Length = 91
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ A S ++I VR+L +K ++V GED LSKQANENATLLF C +RSTLCTK
Sbjct: 5 NTRAPTDLSPLKVID---SVRDLSKKIIVVGGEDMLSKQANENATLLFNCHLRSTLCTKR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE ++LS+EAFEWL+GEI+ RFQQ+ P
Sbjct: 62 VAEEFKLSTEAFEWLLGEIDTRFQQSMAHP 91
>gi|262303445|gb|ACY44315.1| RNA polymerase largest subunit [Idiogaryops pumilis]
Length = 654
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/78 (64%), Positives = 62/78 (79%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV GED+LS QAN+NAT+LF+ L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 443 GVEDLIKKLIIVKGEDRLSIQANDNATILFRALIRSTLCTKRVAEEFRLSTEAFEWLLGE 502
Query: 85 IENRFQQAQCAPGEMVGA 102
IE RF QA P V A
Sbjct: 503 IETRFNQAMVXPXAGVSA 520
>gi|13123131|gb|AAK12789.1| RNA polymerase II largest subunit [Equitius doriae]
Length = 91
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 50/70 (71%), Positives = 61/70 (87%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC++ VAE YRLS+EAFEWL+GE
Sbjct: 20 GVEKLIKKLVIVPGEDRLSLQANDNATLLFRSLLRSTLCSRRVAEEYRLSTEAFEWLIGE 79
Query: 85 IENRFQQAQC 94
IE RFQQAQ
Sbjct: 80 IETRFQQAQV 89
>gi|344303415|gb|EGW33664.1| hypothetical protein SPAPADRAFT_134208 [Spathaspora passalidarum NRRL
Y-27907]
Length = 1748
Score = 107 bits (268), Expect = 7e-22, Method: Composition-based stats.
Identities = 50/100 (50%), Positives = 71/100 (71%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GVR+L K ++V G+ LSK+A NATLLFQCL+RS L + V E
Sbjct: 983 GRYKASDLRLDEIILGVRQLCTKLLVVRGDSPLSKEAQANATLLFQCLLRSRLAARRVIE 1042
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +FEW+VGEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1043 EFKLNRASFEWVVGEIETQFQKSIVHPGEMVGVVAAQSIG 1082
>gi|262303451|gb|ACY44318.1| RNA polymerase largest subunit [Leiobunum verrucosum]
Length = 654
Score = 107 bits (268), Expect = 8e-22, Method: Composition-based stats.
Identities = 50/78 (64%), Positives = 63/78 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAF+WL+GE
Sbjct: 443 GVEELVKKLVIVQGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSAEAFDWLLGE 502
Query: 85 IENRFQQAQCAPGEMVGA 102
I+ RFQQ+Q P V A
Sbjct: 503 IDTRFQQSQVQPXAGVSA 520
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L E+ ++V G D++S+QA NATLLFQ L+R T ++ V E+YRLS++AFEW++GE
Sbjct: 747 GVKKLSERLMVVRGSDKISEQAQANATLLFQMLLRQTFASRRVIEDYRLSAQAFEWILGE 806
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF + APGEMVG LAAQS+G
Sbjct: 807 VEARFNTSLVAPGEMVGPLAAQSIG 831
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 107 bits (267), Expect = 8e-22, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L+ K + G+D+++K+ ENATLLFQ L+RS L TK V Y L+ AFEW++GE
Sbjct: 992 GVRNLISKLSVFRGDDRITKEIQENATLLFQILLRSKLATKRVVMEYHLNKIAFEWIIGE 1051
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQ Q PGEMVG LAAQS+G
Sbjct: 1052 IEARFQQCQVNPGEMVGTLAAQSIG 1076
>gi|262303459|gb|ACY44322.1| RNA polymerase largest subunit [Prokoenenia wheeleri]
Length = 654
Score = 107 bits (267), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/96 (59%), Positives = 68/96 (70%), Gaps = 3/96 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N Q S R+I GV +L++K IV GED+LS QANENATLLF+ L+RSTLC+K
Sbjct: 428 NQRGQTDLSPLRVIQ---GVDDLVKKLQIVPGEDRLSIQANENATLLFRGLLRSTLCSKR 484
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGA 102
VAE +RLSSEAFEWL+GEI+ RF QAQ P V A
Sbjct: 485 VAEEFRLSSEAFEWLLGEIDTRFNQAQVQPXAGVSA 520
>gi|77176709|gb|ABA64469.1| DNA-dependent RNA polymerase II largest subunit [Glaucocystis
nostochinearum]
Length = 1852
Score = 107 bits (267), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L ++ V++ GED LS +A NAT+LFQ LVRS L +K V YRL+S AFEWL+GE
Sbjct: 999 GVNLLTKQLVVIPGEDPLSVEAQANATMLFQILVRSCLASKRVLTEYRLTSHAFEWLLGE 1058
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGA+AAQS+G
Sbjct: 1059 IESRFLQAIANPGEMVGAIAAQSIG 1083
>gi|13123229|gb|AAK12831.1| RNA polymerase II largest subunit [Taracus pallipes]
Length = 91
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV +L++K +IV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLSSEAFE
Sbjct: 15 IRVTQGVEDLVKKLMIVPGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSSEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|13123110|gb|AAK12780.1| RNA polymerase II largest subunit [Ceratolasma tricantha]
gi|13123152|gb|AAK12798.1| RNA polymerase II largest subunit [Ischyropsalis luteipes]
Length = 91
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K +IV G+D+LS QAN+NAT LF+ L+RSTLC+K VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEELVKKLMIVPGDDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|13123082|gb|AAK12768.1| RNA polymerase II largest subunit [tachyuropodid 'Tac']
Length = 91
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED LS QANENAT LF+ L+R+TLCTK VA+ +RLSSEAFEWL+GE
Sbjct: 20 GVEELVKKLVIVPGEDHLSVQANENATFLFRALLRATLCTKRVADEFRLSSEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QA P
Sbjct: 80 IETRFNQAHGQP 91
>gi|157841380|gb|ABV83144.1| RNA polymerase 2 [Teratorhabditis palmarum]
Length = 633
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 67/85 (78%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+REL +K VIV+GED++SKQA NATLL L+RSTLC+K VA ++L++EAF+WL+GE
Sbjct: 221 GIRELSKKLVIVSGEDRISKQAQYNATLLMNILIRSTLCSKRVASMHKLNNEAFDWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+QA GALAAQSLG
Sbjct: 281 IEHRFKQAIAXXXXXXGALAAQSLG 305
>gi|13123124|gb|AAK12786.1| RNA polymerase II largest subunit [Dicranolasma scabrum]
Length = 91
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV EL++K +IV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAFE
Sbjct: 15 IRVTQGVEELVKKLMIVPGEDRLSIQANDNATFLFRALLRSTLCSKRVAEEFRLSTEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium dendrobatidis
JAM81]
Length = 1797
Score = 107 bits (266), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/84 (59%), Positives = 66/84 (78%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ V+V G+D+LS +A NATLLFQ L+RSTL T+ V E+Y LS++AF+WL+GEI
Sbjct: 1009 VKALLDNLVVVRGKDELSLEAQYNATLLFQILLRSTLATRRVIEDYHLSTQAFDWLLGEI 1068
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ RF QA PGEMVG +AAQS+G
Sbjct: 1069 DARFNQAIVHPGEMVGTIAAQSIG 1092
>gi|13123030|gb|AAK12746.1| RNA polymerase II largest subunit [Parasiro coiffaiti]
Length = 91
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLC+K
Sbjct: 5 NKRAPSDLSPLRVIQ---GVDDLVKKLVIVPGEDRLSVQANDNATLLFRALLRSTLCSKR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE+ RLS+EAF+WL+GE+E RFQQ+Q P
Sbjct: 62 VAEDLRLSTEAFDWLLGEVETRFQQSQVQP 91
>gi|6716483|gb|AAF26644.1|AF138994_1 RNA polymerase II largest subunit [Nipponopsalis abei]
Length = 91
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV +L++K +IV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLSSEAFE
Sbjct: 15 IRVTQGVEDLVKKLMIVPGEDRLSIQANDNATFLFRALLRSTLCSKRVAEEFRLSSEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|13123002|gb|AAK12734.1| RNA polymerase II largest subunit [Idiogaryops paludis]
Length = 91
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV GED+LS QAN+NAT+LF+ L+RSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 20 GVEDLIKKLIIVKGEDRLSIQANDNATILFRALIRSTLCTKRVAEEFRLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QA P
Sbjct: 80 IETRFNQAMVQP 91
>gi|13122929|gb|AAK12703.1| RNA polymerase II largest subunit [Carcinoscorpius rotundicauda]
Length = 91
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K V+V GED+LS QAN+NAT+LF+ L+RSTLC K VAE +RLSSE+F+WL+GE
Sbjct: 20 GVEELVKKLVVVPGEDRLSIQANDNATILFRALLRSTLCAKRVAEEFRLSSESFQWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQAQ P
Sbjct: 80 IETRFQQAQVQP 91
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 106 bits (265), Expect = 2e-21, Method: Composition-based stats.
Identities = 50/100 (50%), Positives = 71/100 (71%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + GVREL +K ++V G+ L K+A ENATLLFQCL+RS L + V E
Sbjct: 975 GRYRASDLRLEEIIFGVRELCKKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +FEW++GEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRVSFEWVLGEIETQFQKSIVHPGEMVGVVAAQSIG 1074
>gi|13094495|gb|AAK11924.1| RNA polymerase II largest subunit [Platydesmus sp. 'Pla']
Length = 91
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +V G+D LS+QANENATLLF L+RSTLCTK VAE +RLS+EAFEW++GE
Sbjct: 20 GVRELSRKITVVPGDDALSQQANENATLLFNSLLRSTLCTKRVAEEFRLSAEAFEWVLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|123316011|gb|ABM74384.1| RNA polymerase II largest subunit [Paragordius varius]
Length = 467
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 68/85 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL EK ++V G D++S++A +AT L L+RSTLCT+ VAE ++LSS+AF+W++GE
Sbjct: 152 GVQELSEKLIVVKGVDRISQRAQLDATFLMNALIRSTLCTRRVAEEFKLSSDAFDWVLGE 211
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF+ + PGEMVG L+AQSLG
Sbjct: 212 IESRFRSSLVDPGEMVGPLSAQSLG 236
>gi|13122964|gb|AAK12718.1| RNA polymerase II largest subunit [Dinothrombium pandorae]
Length = 91
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N Q S R+I GV +L++K IV GED+LS QANENAT+LF+ L+RS LCTK
Sbjct: 5 NLRGQTDLSPLRVIE---GVEDLIKKLNIVPGEDRLSVQANENATILFRSLLRSMLCTKK 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE YRL++EAF+WL+GEIE RFQQAQ P
Sbjct: 62 VAEEYRLTTEAFDWLIGEIETRFQQAQVQP 91
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/83 (57%), Positives = 64/83 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ELLE+ V++ G+D+LS +A NATLLFQ LVRSTL T+ V E +RL AF+W++GEI
Sbjct: 899 VQELLERTVVIRGKDELSVEAQANATLLFQILVRSTLATRRVLEEFRLDRRAFDWIIGEI 958
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
++RF Q PGEMVG +AAQS+
Sbjct: 959 DSRFNQTLVHPGEMVGTIAAQSI 981
>gi|13123103|gb|AAK12777.1| RNA polymerase II largest subunit [Caddo pepperella]
gi|215254330|gb|ACJ64157.1| RNA polymerase II largest subunit [Caddo pepperella]
Length = 91
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV EL++K +IV GED+LS QAN+NAT LF+ L+RSTLC++ VAE ++LSSEAFE
Sbjct: 15 IRVTQGVEELVKKLIIVPGEDRLSVQANDNATFLFRALLRSTLCSRRVAEEFKLSSEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 72/100 (72%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + GVR+L K ++V G+ +L+K+A ENATLLFQCLVRS L + V E
Sbjct: 975 GRYKASDLRLDEIVNGVRDLCTKLLVVRGKTKLAKEAQENATLLFQCLVRSRLAARRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +F+W++GEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRSSFDWVLGEIETQFQKSIVHPGEMVGVVAAQSIG 1074
>gi|13123117|gb|AAK12783.1| RNA polymerase II largest subunit [Dendrolasma dentipalpe]
Length = 91
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K +IV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EA+EWL+GE
Sbjct: 20 GVEELVKKLIIVPGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSTEAYEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVQP 91
>gi|13111530|gb|AAK12361.1| RNA polymerase II largest subunit [Endeis laevis]
Length = 91
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L K VIV GED+LS QANENATLLFQ L+RSTLC+K +AE +RLS+EAF+WL+GE
Sbjct: 20 GVESLCNKLVIVPGEDRLSLQANENATLLFQALLRSTLCSKKIAEEFRLSTEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQVMP 91
>gi|6716487|gb|AAF26648.1|AF138998_1 RNA polymerase II largest subunit [Cypridopsis vidua]
Length = 91
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ AQ S R+I GV EL++KC IV G+D LS QAN NATLLF+CL+RSTLCT+
Sbjct: 5 NNRAQTDLSPLRVIN---GVNELIKKCTIVQGDDNLSVQANYNATLLFRCLIRSTLCTRR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
+A+ +RLS+EAF+WL+GE+E RF QA P
Sbjct: 62 MADEFRLSTEAFDWLLGEVEARFIQALAQP 91
>gi|34597094|gb|AAQ77122.1| RNA polymerase II largest subunit [Ribautia sp. 'Rib']
Length = 91
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/71 (66%), Positives = 58/71 (81%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL K ++V G+D LS+QANENATLLF CL+RSTLCTK +AE +RLS+EA+EWL+GEI
Sbjct: 21 VRELSSKLIVVPGDDHLSRQANENATLLFNCLLRSTLCTKRMAEEFRLSTEAYEWLLGEI 80
Query: 86 ENRFQQAQCAP 96
E RF +Q P
Sbjct: 81 ETRFXHSQVQP 91
>gi|302794771|ref|XP_002979149.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
gi|300152917|gb|EFJ19557.1| hypothetical protein SELMODRAFT_110201 [Selaginella moellendorffii]
Length = 1764
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L EK ++V G+D +S +A +NATL F CL+RST +K V + YRL+ EAFEW++GE
Sbjct: 1027 AVDKLQEKLLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGE 1086
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+ APGEM+G +AAQS+G
Sbjct: 1087 IETRFLQSLVAPGEMIGCVAAQSIG 1111
>gi|302813666|ref|XP_002988518.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
gi|300143625|gb|EFJ10314.1| hypothetical protein SELMODRAFT_128226 [Selaginella moellendorffii]
Length = 1797
Score = 105 bits (263), Expect = 3e-21, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L EK ++V G+D +S +A +NATL F CL+RST +K V + YRL+ EAFEW++GE
Sbjct: 1019 AVDKLQEKLLVVPGDDPISIEAQKNATLFFNCLLRSTFASKRVLKEYRLTKEAFEWVIGE 1078
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF Q+ APGEM+G +AAQS+G
Sbjct: 1079 IETRFLQSLVAPGEMIGCVAAQSIG 1103
>gi|13123222|gb|AAK12828.1| RNA polymerase II largest subunit [Trogulus nepaeformis]
Length = 91
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 63/77 (81%)
Query: 20 IGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFE 79
I + GV EL++K +IV G+D+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAFE
Sbjct: 15 IRVTQGVEELVKKLMIVPGDDRLSIQANDNATFLFRALLRSTLCSKRVAEEFRLSTEAFE 74
Query: 80 WLVGEIENRFQQAQCAP 96
WL+GEI+ RFQQAQ P
Sbjct: 75 WLLGEIDTRFQQAQVQP 91
>gi|13123096|gb|AAK12774.1| RNA polymerase II largest subunit [Astrobunus grallator]
Length = 91
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAF+WL+GE
Sbjct: 20 GVEELVKKLVIVQGEDRLSVQANDNATFLFRALLRSTLCSKRVAEEFRLSAEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQ+Q P
Sbjct: 80 IDTRFQQSQVQP 91
>gi|13123009|gb|AAK12737.1| RNA polymerase II largest subunit [Neacarus texanus]
Length = 91
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ++++K +IV GED LS QANENAT LF+ L+R TLC+K VAE +RLSSEAFEWL+GE
Sbjct: 20 GVDDIVKKLIIVPGEDHLSVQANENATFLFRALLRGTLCSKRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQGHP 91
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GV+EL K ++V G+ L K+A ENATLLFQCL+RS L + V E
Sbjct: 975 GRYRASDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +FEW++GEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIG 1074
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 49/100 (49%), Positives = 71/100 (71%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GV+EL K ++V G+ L K+A ENATLLFQCL+RS L + V E
Sbjct: 975 GRYRASDLRLEEIVLGVKELCMKLLVVRGDTPLVKEAQENATLLFQCLLRSRLAARRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +FEW++GEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRASFEWVMGEIETQFQKSIVHPGEMVGVVAAQSIG 1074
>gi|210075525|ref|XP_501909.2| YALI0C16566p [Yarrowia lipolytica]
gi|199425290|emb|CAG82229.2| YALI0C16566p [Yarrowia lipolytica CLIB122]
Length = 1750
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/112 (47%), Positives = 74/112 (66%), Gaps = 5/112 (4%)
Query: 3 KSVRNSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCL 57
+ V+NS ++ ++ L I GV+ L ++ IV G+ L+K+A ENAT+LFQCL
Sbjct: 966 RVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCL 1025
Query: 58 VRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
VRS TK V E YRL+ AFEW++GEIE +F ++ PGEMVG +AAQS+G
Sbjct: 1026 VRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKSVVHPGEMVGVIAAQSIG 1077
>gi|157841434|gb|ABV83178.1| RNA polymerase 2 [Bunonema reticulatum]
Length = 614
Score = 105 bits (262), Expect = 4e-21, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL + VIV+GED +S+ A ENATLL + L+RSTLC++ +AE +RL++EAFEWL+GE
Sbjct: 207 GVRELTARLVIVSGEDHISQHAQENATLLIKILLRSTLCSRKMAEQHRLNAEAFEWLLGE 266
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ RFQQA ALAAQSLG
Sbjct: 267 VXTRFQQAXXXXXXXXXALAAQSLG 291
>gi|13123187|gb|AAK12813.1| RNA polymerase II largest subunit [Phalangium opilio]
Length = 91
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAF+WL+GE
Sbjct: 20 GVEELVKKLVIVQGEDRLSIQANDNATFLFRALLRSTLCSKRVAEEFRLSAEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQ+Q P
Sbjct: 80 IDTRFQQSQVQP 91
>gi|38232251|gb|AAR14961.1| RNA polymerase II largest subunit [Nymphon unguiculatum-charcoti
complex sp. SEM-1997]
Length = 91
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/72 (69%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L K +IV GED+LS QAN NATLLFQ L+RSTLCTK VAE +RLS+EAF+WL+GE
Sbjct: 20 GVETLANKLLIVPGEDRLSLQANANATLLFQALLRSTLCTKKVAEEFRLSTEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQQAQ P
Sbjct: 80 IDTRFQQAQAMP 91
>gi|13123051|gb|AAK12755.1| RNA polymerase II largest subunit [Siro acaroides]
Length = 91
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 67/90 (74%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N A S R+I GV +L+ K VIV G+D+LS QAN+NATLLF+ L+RSTLC+K
Sbjct: 5 NKRAPSDLSPLRVIQ---GVDDLVRKLVIVPGDDRLSLQANDNATLLFRALLRSTLCSKR 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
VAE+ RLS+EAF+WL+GE+E RFQQ+Q P
Sbjct: 62 VAEDLRLSTEAFDWLLGEVETRFQQSQVQP 91
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 105 bits (261), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/100 (48%), Positives = 72/100 (72%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S ++ + GVR+L K ++V G +L+K+A ENATLLFQCLVRS L ++ V E
Sbjct: 975 GRYKASDLKLDEIVNGVRDLCTKLLVVRGNTKLAKEAQENATLLFQCLVRSRLASRRVIE 1034
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++L+ +F+W++GEIE +FQ++ PGEMVG +AAQS+G
Sbjct: 1035 EFKLNRSSFDWVLGEIETQFQKSIVHPGEMVGVVAAQSIG 1074
>gi|13122924|gb|AAK12701.1| RNA polymerase II largest subunit [Caddo agilis]
gi|215254323|gb|ACJ64154.1| RNA polymerase II largest subunit [Caddo agilis]
Length = 91
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K +IV GED+LS QAN+NAT LF+ L+RSTLC++ VAE ++LSSEAFEWL+GE
Sbjct: 20 GVEELVKKLIIVPGEDRLSVQANDNATFLFRALLRSTLCSRRVAEEFKLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ R+QQAQ P
Sbjct: 80 IDTRYQQAQVQP 91
>gi|4883421|emb|CAA21466.2| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
gi|7270532|emb|CAB81489.1| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain
[Arabidopsis thaliana]
Length = 1840
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GE
Sbjct: 1010 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1070 IESRFLQSLVAPGEMIGCVAAQSIG 1094
>gi|334187204|ref|NP_195305.2| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
gi|322510106|sp|P18616.3|RPB1_ARATH RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III largest subunit
gi|332661173|gb|AEE86573.1| DNA-directed RNA polymerase II subunit RPB1 [Arabidopsis thaliana]
Length = 1839
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GE
Sbjct: 1009 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIG 1093
>gi|297798336|ref|XP_002867052.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
gi|297312888|gb|EFH43311.1| hypothetical protein ARALYDRAFT_491060 [Arabidopsis lyrata subsp.
lyrata]
Length = 1839
Score = 104 bits (260), Expect = 5e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GE
Sbjct: 1010 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGE 1069
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1070 IESRFLQSLVAPGEMIGCVAAQSIG 1094
>gi|18736|emb|CAA36736.1| DNA-directed RNA polymerase [Glycine max]
Length = 977
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS++A +NATLLF L+RST +K V E YRLS E+FEW+VGE
Sbjct: 200 AIDKLQERLKVVPGEDALSQEAQKNATLLFNILLRSTFASKRVLEEYRLSRESFEWVVGE 259
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ PGEM+G +AAQS+G
Sbjct: 260 IESRFLQSLVVPGEMIGVVAAQSIG 284
>gi|120564951|gb|ABM27003.1| RNA polymerase II largest subunit, partial [Chytriomyces hyalinus]
Length = 1003
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 54/110 (49%), Positives = 74/110 (67%), Gaps = 5/110 (4%)
Query: 5 VRNSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVR 59
+ N+ + R+ + LN GV+ LL+K V+V G D LS A +NATLLFQ L++
Sbjct: 890 IANATRSFHIDRRKPVDLNPTVVIQGVQMLLDKLVVVRGYDTLSILAQQNATLLFQILLK 949
Query: 60 STLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
STL ++ V + Y+L+S AFEWL+GEI+ RF QA PGEMVG +AAQS+G
Sbjct: 950 STLSSRKVIDEYKLNSHAFEWLLGEIDQRFNQAIVHPGEMVGTIAAQSIG 999
>gi|324500036|gb|ADY40031.1| DNA-directed RNA polymerase II subunit RPB1 [Ascaris suum]
Length = 1840
Score = 104 bits (260), Expect = 6e-21, Method: Composition-based stats.
Identities = 49/84 (58%), Positives = 67/84 (79%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+EL ++ ++V G D +SKQA +NATLL L+RSTLC+K +A ++L+++ FEWL+GEI
Sbjct: 1026 VQELCKRLIVVRGGDSISKQAQDNATLLMCMLLRSTLCSKRMAVEHKLNADGFEWLLGEI 1085
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVGALAAQSLG
Sbjct: 1086 ESRFNRAIVYPGEMVGALAAQSLG 1109
>gi|215254316|gb|ACJ64151.1| RNA polymerase II largest subunit [Austropsopilio sudamericanus]
Length = 91
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K +IV G+D+LS QAN+NAT LF+ L+RSTLC++ VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEELVKKLIIVPGDDRLSVQANDNATFLFRALLRSTLCSRRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RF QAQC P
Sbjct: 80 IDTRFCQAQCQP 91
>gi|308387502|gb|ADO30479.1| RNA polymerase II [Bactrocera dorsalis]
Length = 254
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 48/60 (80%), Positives = 54/60 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L ++CVIV G D LSKQANENATLLFQCLVRSTLCTK VAE +RLS+EAFEWL+GE
Sbjct: 195 GVRDLSQRCVIVVGNDHLSKQANENATLLFQCLVRSTLCTKYVAEEFRLSAEAFEWLIGE 254
>gi|152060506|sp|A5DCV3.2|RPB1_PICGU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
Length = 1579
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +++ G+ L K++ ENATLLFQCLVRS L T+ V E +RL+ +FEW +GE
Sbjct: 822 GVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGE 881
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 882 IETQFQKSLVHPGEMVGVIAAQSIG 906
>gi|13123058|gb|AAK12758.1| RNA polymerase II largest subunit [Sejus sp. 'Sej']
Length = 91
Score = 104 bits (259), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV GED LS QANENAT LF+ L+R+TLC+K VAE +RLS+EAFEWL+GE
Sbjct: 20 GVEDLVKKLIIVPGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSAEAFEWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RF Q+Q P
Sbjct: 80 IETRFHQSQGQP 91
>gi|262303439|gb|ACY44312.1| RNA polymerase largest subunit [Eremocosta gigasella]
Length = 654
Score = 104 bits (259), Expect = 7e-21, Method: Composition-based stats.
Identities = 54/96 (56%), Positives = 70/96 (72%), Gaps = 3/96 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ +Q S R I GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLCTK
Sbjct: 428 NTRSQTDLSPLRTIK---GVEDLVKKLVIVPGEDRLSIQANDNATLLFRALLRSTLCTKR 484
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGA 102
V++ +RLS+EAF+WL+ EIE +FQQAQ P V A
Sbjct: 485 VSDEFRLSTEAFDWLLEEIETKFQQAQGQPXAGVSA 520
>gi|13122910|gb|AAK12695.1| RNA polymerase II largest subunit [Amblyomma sp. 'Amb2']
Length = 91
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED LS QANENAT LF+ L+R+TLC+K VAE +RLS+E+FEWL+GE
Sbjct: 20 GVEELVKKLVIVPGEDHLSIQANENATFLFRALLRATLCSKRVAEEFRLSTESFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF Q+Q P
Sbjct: 80 IETRFHQSQGQP 91
>gi|34597124|gb|AAQ77137.1| RNA polymerase II largest subunit [Tasmanophilus spinatus]
Length = 91
Score = 103 bits (258), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K ++V G+D +S+QAN+NATLLF CL+RSTLCTK VAE +RLSSEAF+WL+ E
Sbjct: 20 GVQELSKKLIVVPGDDFISRQANDNATLLFNCLLRSTLCTKRVAEEFRLSSEAFDWLLXE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ Q P
Sbjct: 80 IEXRFQQCQVXP 91
>gi|33326219|gb|AAQ08519.1| RNA polymerase II largest subunit [Psilotum nudum]
Length = 1013
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 64/84 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V GED++SK+A +NATL F L+RSTL +K V + YRL+ EAFEW++GE
Sbjct: 930 AVDKLQERLKVVPGEDEISKEAQKNATLFFNILLRSTLASKRVLKEYRLTKEAFEWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE RF Q+ APGEM+G +AAQS+
Sbjct: 990 IETRFLQSIVAPGEMIGCVAAQSI 1013
>gi|13122969|gb|AAK12720.1| RNA polymerase II largest subunit [Branchia sp. 'Ere']
Length = 232
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 68/90 (75%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N+ +Q S R I GV +L++K VIV GED+LS QAN+NATLLF+ L+RSTLCTK
Sbjct: 146 NTRSQTDLSPLRTIK---GVEDLVKKLVIVPGEDRLSIQANDNATLLFRALLRSTLCTKR 202
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
V++ +RLS+EAF+WL+ EIE +FQQAQ P
Sbjct: 203 VSDEFRLSTEAFDWLLEEIETKFQQAQGQP 232
>gi|356538329|ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS++A +NATLLF L+RST +K V E YRLS EAFEW+VGE
Sbjct: 1008 AIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ A GEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVASGEMIGCVAAQSIG 1092
>gi|356496595|ref|XP_003517152.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS++A +NATLLF L+RST +K V E YRLS EAFEW+VGE
Sbjct: 1008 AIDKLQERLKVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ A GEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVASGEMIGCVAAQSIG 1092
>gi|215254309|gb|ACJ64148.1| RNA polymerase II largest subunit [Acropsopilio chilensis]
Length = 91
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K +IV G+D+LS QAN+NAT LF+ L+RSTLC++ VAE +RLSSEAFEWL+GE
Sbjct: 20 GVEDLVKKLIIVPGDDRLSIQANDNATFLFRALLRSTLCSRRVAEEFRLSSEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RF QAQC P
Sbjct: 80 IDTRFCQAQCQP 91
>gi|168066799|ref|XP_001785319.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663074|gb|EDQ49860.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1742
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V L E+ +V G DQ+S +A NATL F CL+RSTL +K V ++YRL+ EAFEW++GE
Sbjct: 1011 AVENLQERLRVVPGNDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFEWVIGE 1070
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF + APGEM+G +AAQS+G
Sbjct: 1071 VETRFLMSLVAPGEMIGCVAAQSIG 1095
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+K ++V G D+LSK+ +NATLLF L+RS L ++ V E + LSSEAF+W++ EI
Sbjct: 926 VQNLLDKLIVVRGSDELSKEGQDNATLLFHILIRSMLSSRRVVEEFHLSSEAFDWIIKEI 985
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
NRF Q PGEMVG LAAQS+G
Sbjct: 986 GNRFNQCVVNPGEMVGVLAAQSIG 1009
>gi|357483939|ref|XP_003612256.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355513591|gb|AES95214.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 1864
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS++A +NATLLF L+RST +K V E YRLS EAFEW+VGE
Sbjct: 1026 AIDKLQERLRVVPGEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGE 1085
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ A GEM+G +AAQS+G
Sbjct: 1086 IESRFLQSLVASGEMIGCVAAQSIG 1110
>gi|146423605|ref|XP_001487729.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC
6260]
gi|146388850|gb|EDK37008.1| hypothetical protein PGUG_01105 [Meyerozyma guilliermondii ATCC
6260]
Length = 1018
Score = 103 bits (258), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +++ G+ L K++ ENATLLFQCLVRS L T+ V E +RL+ +FEW +GE
Sbjct: 256 GVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGE 315
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 316 IETQFQKSLVHPGEMVGVIAAQSIG 340
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 50/110 (45%), Positives = 72/110 (65%), Gaps = 5/110 (4%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVR 59
+RN+ + R+ LN +GV E +++ +V G D+ ++++ ENATLLFQ L+R
Sbjct: 969 IRNAQQIFHIDKRKATDLNPRDIILGVNETIKRLTVVRGNDKFTRESQENATLLFQILLR 1028
Query: 60 STLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
S L ++ V E YRL+ AFEW++GEIE RF + PGEMVG LAAQS+G
Sbjct: 1029 SRLASRRVIEEYRLNKVAFEWVLGEIETRFIHSVANPGEMVGTLAAQSIG 1078
>gi|168053159|ref|XP_001779005.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669567|gb|EDQ56151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1646
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+DQ+S +A NATL F CL+RSTL +K V ++YRL+ EAF+W++GE
Sbjct: 996 AVDKLQERLRVVPGDDQISMEAQRNATLFFGCLLRSTLASKRVLKDYRLTREAFDWVIGE 1055
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF + APGEM+G +AAQS+G
Sbjct: 1056 IETRFLMSLVAPGEMIGCVAAQSIG 1080
>gi|83320436|gb|ABC02845.1| RNA polymerase II largest subunit, partial [Entomophthora muscae]
Length = 1007
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 53/109 (48%), Positives = 70/109 (64%), Gaps = 5/109 (4%)
Query: 5 VRNSPAQYSGSARRIIGLNIG-----VRELLEKCVIVAGEDQLSKQANENATLLFQCLVR 59
+RN+ + A R L+ V LL+ ++ G D LS++AN NAT+LF+ LVR
Sbjct: 899 IRNAQVMFHCHAHRPTNLHPSLVISTVERLLKGLTVIRGNDALSEEANTNATILFKVLVR 958
Query: 60 STLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSL 108
S L +K V E + L++EAFEWLV EI+NRF AQ PGEMVG LAAQS+
Sbjct: 959 SILASKRVLEEFHLTTEAFEWLVAEIQNRFNLAQANPGEMVGTLAAQSI 1007
>gi|294654840|ref|XP_002770038.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
gi|199429189|emb|CAR65414.1| DEHA2A13618p [Debaryomyces hansenii CBS767]
Length = 1749
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L K +++ G+ L+K+A ENATLLFQCL+RS L T+ V E ++LS +FEW++GE
Sbjct: 995 GVQDLCTKLLVIRGKTALTKEAQENATLLFQCLLRSRLATRRVIEEFKLSRISFEWVMGE 1054
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 1055 IETQFQKSIVHPGEMVGVIAAQSIG 1079
>gi|13094488|gb|AAK11921.1| RNA polymerase II largest subunit [Polyzonium germanicum]
Length = 91
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 57/72 (79%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L K +V G+D LS+ ANENATLLF L+RSTLC+K VAE +RLS+EAFEW++GE
Sbjct: 20 GVRDLSRKITVVPGDDDLSRSANENATLLFNSLLRSTLCSKRVAEEFRLSAEAFEWVLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|34597086|gb|AAQ77118.1| RNA polymerase II largest subunit [Plesioproctus comans]
Length = 91
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 59/68 (86%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L +K +IV+GED++SKQAN NATLLFQCL+RSTL +K V+E+YRL+ EAFEW++GEIE+R
Sbjct: 24 LSKKLIIVSGEDKISKQANANATLLFQCLLRSTLSSKRVSEDYRLTEEAFEWILGEIESR 83
Query: 89 FQQAQCAP 96
FQ AQ P
Sbjct: 84 FQNAQVQP 91
>gi|34597112|gb|AAQ77131.1| RNA polymerase II largest subunit [Siphonocybe sp. 'Siph']
Length = 91
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +V GED LS+QANENATLLF L+RSTLCTK VA +RLS+EAF+W++GE
Sbjct: 20 GVRDLSKKLXVVPGEDNLSRQANENATLLFNTLLRSTLCTKRVALEFRLSAEAFDWVLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFNQAQVQP 91
>gi|157841378|gb|ABV83143.1| RNA polymerase 2 [Mesorhabditis longespiculosa]
Length = 623
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 49/85 (57%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL ++ +IV+GED++S+QA NATLL L+RSTLC+K +AE ++L+ E FEWL+GE
Sbjct: 221 GVRELSKRLIIVSGEDRISQQAQYNATLLMNILLRSTLCSKQMAEKHKLNQEGFEWLLGE 280
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA G LA QSLG
Sbjct: 281 IEHRFQQAIVXXXXXXGXLAXQSLG 305
>gi|13094389|gb|AAK11879.1| RNA polymerase II largest subunit [Cleidogona major]
Length = 91
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/72 (68%), Positives = 56/72 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV++L + VIV GED LSKQANENATLLF CLVRS L T+ VA+ +RLS EAFEWL+GE
Sbjct: 20 GVKDLSTRIVIVPGEDNLSKQANENATLLFNCLVRSVLSTRRVADEFRLSGEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QA P
Sbjct: 80 IETRFNQALVQP 91
>gi|13122936|gb|AAK12706.1| RNA polymerase II largest subunit [Cryptocellus centralis]
Length = 91
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L++K ++V GED+LS QAN+NATLLF+ L+RSTLC+K VAE +RLS EAFEWL+GE
Sbjct: 20 GVEQLVKKLIVVPGEDRLSLQANDNATLLFRGLLRSTLCSKRVAEEFRLSVEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+ P
Sbjct: 80 IETRFQQSHVEP 91
>gi|320166366|gb|EFW43265.1| polymerase II polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1792
Score = 103 bits (256), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/85 (61%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L E VIV G D +S +A NA LF +RS L +K V +RL S+AFEWL+GE
Sbjct: 1030 GVRRLTENLVIVKGSDPISVEAQNNAICLFGIHLRSVLNSKRVLLEHRLHSQAFEWLLGE 1089
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA+ PGEMVGALAAQSLG
Sbjct: 1090 IESRFQQAKVEPGEMVGALAAQSLG 1114
>gi|16494|emb|CAA36735.1| DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 1860
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GE
Sbjct: 1030 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGE 1089
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G + AQS+G
Sbjct: 1090 IESRFLQSLVAPGEMIGCVPAQSIG 1114
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 66/85 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K ++ GE++L K+A +NAT LFQCLVR+ L T+ + E +RL+ +AFEW++G
Sbjct: 991 GVRDLCKKLFVLRGENELIKEAQQNATSLFQCLVRARLATRRILEEFRLNRDAFEWVLGT 1050
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 1051 IEAQFQRSLVHPGEMVGVIAAQSIG 1075
>gi|13123016|gb|AAK12740.1| RNA polymerase II largest subunit [Odiellus pictus]
Length = 91
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 60/72 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL++K VIV GED+LS QAN+NAT LF+ L+RSTLC+K VAE +RLS+EAF+WL+GE
Sbjct: 20 GVEELVKKLVIVKGEDRLSIQANDNATFLFRALLRSTLCSKRVAEEFRLSAEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
I+ RFQ +Q P
Sbjct: 80 IDTRFQLSQVQP 91
>gi|16505|emb|CAA37130.1| RNA polymerase II [Arabidopsis thaliana]
Length = 1841
Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS E FEW++GE
Sbjct: 1004 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSRERFEWVIGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1064 IESRFLQSLVAPGEMIGCVAAQSIG 1088
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/83 (56%), Positives = 64/83 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL+E ++V G DQLS +A +NATLLF L+RSTL +K + E +RLS++AF+W++GEI
Sbjct: 917 VNELMENLLVVRGNDQLSIEAQKNATLLFSILLRSTLASKRLIEEFRLSTQAFDWVLGEI 976
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
+ RF QA PGEMVG +AAQS+
Sbjct: 977 DARFNQAIVHPGEMVGTIAAQSI 999
>gi|13094530|gb|AAK11939.1| RNA polymerase II largest subunit [Striaria columbiana]
Length = 91
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 56/72 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL K +IV GED LSKQANENATLLF CL+RS L T+ VA+ +RLS+E+FEWL+GE
Sbjct: 20 GVKELSSKIIIVPGEDNLSKQANENATLLFNCLIRSVLSTRRVADEFRLSTESFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
+E RF A P
Sbjct: 80 VETRFNHAVVQP 91
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica T-34]
Length = 1947
Score = 102 bits (254), Expect = 3e-20, Method: Composition-based stats.
Identities = 45/86 (52%), Positives = 67/86 (77%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IG+RE+LE+ V++ G+D +S++A NATLLF+ +RS LC+KLV E + ++ EA+EW++G
Sbjct: 1163 IGLREVLERLVVIRGDDPISREAQLNATLLFKIHLRSYLCSKLVIERHHINKEAWEWILG 1222
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
EIE +F ++ PGEM G LAAQS+G
Sbjct: 1223 EIEGQFARSVANPGEMCGTLAAQSIG 1248
>gi|255579596|ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
gi|223529812|gb|EEF31747.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 102 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V E+YRL+ EAF+W++GE
Sbjct: 1008 AVDKLQERLKVVPGDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIG 1092
>gi|167527458|ref|XP_001748061.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773479|gb|EDQ87118.1| predicted protein [Monosiga brevicollis MX1]
Length = 1307
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+R ++ V++ G+D LSK A NATLLF C +RS L ++ +RL+++AF+W++GE
Sbjct: 494 AIRTFTDRLVVIPGDDPLSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGE 553
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF QAQ PGEMVGALAAQSLG
Sbjct: 554 VEKRFMQAQAQPGEMVGALAAQSLG 578
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+R ++ V++ G+D LSK A NATLLF C +RS L ++ +RL+++AF+W++GE
Sbjct: 930 AIRTFTDRLVVIPGDDPLSKVAQRNATLLFNCNLRSVLSSRQCIVRHRLNTKAFDWILGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF QAQ PGEMVGALAAQSLG
Sbjct: 990 VEKRFMQAQAQPGEMVGALAAQSLG 1014
>gi|68300819|gb|AAY89350.1| RNA polymerase II largest subunit [Solanum lycopersicum]
Length = 773
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RS L +K V + YRLS EAFEW+VGE
Sbjct: 685 AVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFEWVVGE 744
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 745 IESRFLQSLVAPGEMIGCVAAQSIG 769
>gi|83320426|gb|ABC02840.1| RNA polymerase II largest subunit, partial [Hyaloraphidium curvatum]
Length = 1002
Score = 102 bits (253), Expect = 4e-20, Method: Composition-based stats.
Identities = 50/83 (60%), Positives = 63/83 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL +CV+V G D LS+QA NATLL+Q LVRSTL +K V YRL+SEAFE++VGEI
Sbjct: 920 VRALLAECVVVPGTDGLSRQAQANATLLWQILVRSTLASKRVLSEYRLTSEAFEFVVGEI 979
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
+ +F A+ GEMVG +AAQS+
Sbjct: 980 KTKFMWAKVQGGEMVGTIAAQSI 1002
>gi|449524332|ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1008 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIG 1092
>gi|449456849|ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1008 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIG 1092
>gi|77176711|gb|ABA64470.1| DNA-dependent RNA polymerase II largest subunit [Cyanophora
paradoxa]
Length = 1000
Score = 101 bits (252), Expect = 5e-20, Method: Composition-based stats.
Identities = 50/85 (58%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L + V++AGED LS++A ENAT LF +R+TL TK V YRLS+ A EWL+G
Sbjct: 910 GVELLSTQLVVIAGEDTLSREAQENATRLFNIHLRATLATKRVLSEYRLSAAALEWLLGV 969
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF QA PGEMVGA+AAQS+G
Sbjct: 970 IESRFNQAIAHPGEMVGAIAAQSIG 994
>gi|78190751|gb|ABB29697.1| DNA-directed RNA polymerase II largest subunit [Aphrocallistes
vastus]
Length = 254
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL +K VIV GED +SK+A NATLL +RSTL K V E + LSS+AF+WL+GE
Sbjct: 169 GVEELCKKLVIVDGEDSISKEAQYNATLLINIHLRSTLACKRVMEEHHLSSQAFDWLLGE 228
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE R ++ PGEMVGAL+AQSLG
Sbjct: 229 IETRXNLSKVQPGEMVGALSAQSLG 253
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 101 bits (251), Expect = 6e-20, Method: Composition-based stats.
Identities = 49/99 (49%), Positives = 69/99 (69%)
Query: 11 QYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAEN 70
Q S I + +GV+EL +K ++ GE ++ +A ENATLLFQCLVRS L T+ V E
Sbjct: 976 QTKASDLPIKDIVVGVQELSKKFKVIRGEGEILAEAQENATLLFQCLVRSRLATRRVLEE 1035
Query: 71 YRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+RL+ +AFEW++G IE +F ++ PGEMVG +AAQS+G
Sbjct: 1036 FRLNKDAFEWVLGTIEQQFLKSLVNPGEMVGVIAAQSIG 1074
>gi|262303453|gb|ACY44319.1| RNA polymerase largest subunit [Peripatus sp. 'Pep']
Length = 654
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 47/78 (60%), Positives = 60/78 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED++SKQA ENATLL L+R+TLC+K V + ++LS+EAFEWL+GE
Sbjct: 443 GVRDLSKKLIIVPGEDRISKQAQENATLLMNILIRATLCSKRVTKEHKLSTEAFEWLLGE 502
Query: 85 IENRFQQAQCAPGEMVGA 102
IE RF QAQ P V A
Sbjct: 503 IETRFAQAQGQPXAGVSA 520
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 101 bits (251), Expect = 7e-20, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++L ++ ++V G+D LS+ A EN TLLF+ L+RS T+ V E + L+ EAFEW++GEI
Sbjct: 1008 VKDLCDRLIVVRGDDALSRAAQENCTLLFRILLRSNFATRRVLEEFHLNREAFEWVLGEI 1067
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF Q+ APGEM G LAAQS+G
Sbjct: 1068 EARFNQSLAAPGEMCGTLAAQSIG 1091
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL +C+++ GED LS A NATLLF LVR L TK V +RL+ AF WL+GEI
Sbjct: 936 VNDLLSRCIVITGEDGLSTMAQHNATLLFNILVRHLLATKRVYAEHRLNRNAFRWLIGEI 995
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+ A+ P EMVG +AAQS+G
Sbjct: 996 ESRFKAAKVNPAEMVGTIAAQSIG 1019
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 67/86 (77%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IG+RE+LE+ +++ G+D +S++A NATLLF+ +RS LC+K+V E + ++ EA+EW++G
Sbjct: 1001 IGLREVLERLIVIRGDDPISREAQVNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILG 1060
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
EIE +F ++ PGEM G LAAQS+G
Sbjct: 1061 EIEGQFARSVANPGEMCGTLAAQSIG 1086
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 100 bits (250), Expect = 8e-20, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL + V+V GE L K+A ENATLLF+ +R+TL T+ V E Y L+ EAFEW +GEI
Sbjct: 999 VRELCNRLVVVRGEGALPKEAQENATLLFRMHLRATLATRRVLERYHLNREAFEWTLGEI 1058
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1059 ETKFNQSVAHPGEMCGTLAAQSIG 1082
>gi|149235017|ref|XP_001523387.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146452796|gb|EDK47052.1| DNA-directed RNA polymerase II largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1745
Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+L K ++V G+ L K+A ENATLLFQCLVRS L ++ V E ++L+ +FEW +GEI
Sbjct: 985 VRDLCTKFLVVRGDTPLMKEAQENATLLFQCLVRSRLASRRVIEEFKLNKASFEWALGEI 1044
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +FQ++ PGEMVG +AAQS+G
Sbjct: 1045 ETQFQKSVVHPGEMVGVVAAQSIG 1068
>gi|13123037|gb|AAK12749.1| RNA polymerase II largest subunit [Calyptophthiracarus olivaceus]
Length = 91
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV +L+++ IV G+D+LS QAN+NATLLF+ L+RSTLCT+ + E RLSSEAF+WL+GE
Sbjct: 20 GVEDLVKRLTIVPGDDRLSIQANQNATLLFRALLRSTLCTRKIIEQDRLSSEAFDWLIGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQQ+Q P
Sbjct: 80 IETRFQQSQVQP 91
>gi|260943858|ref|XP_002616227.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
gi|238849876|gb|EEQ39340.1| hypothetical protein CLUG_03468 [Clavispora lusitaniae ATCC 42720]
Length = 1402
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L K +++ G+ +L+K+A E+ATLLFQCLVRS L + + E ++LS +FEW+ GE
Sbjct: 949 GVKALCSKLLVIRGKSRLAKEAQEDATLLFQCLVRSRLAARRIIEEFKLSRISFEWVCGE 1008
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 1009 IETQFQKSIVHPGEMVGVIAAQSIG 1033
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K ++V G+D+LS +A ENATL FQ L+RSTL +K V +RL+ AFEWL+GE
Sbjct: 1052 GVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGE 1111
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F A + GEM G + AQS+G
Sbjct: 1112 IESKFTSALVSAGEMAGVVGAQSIG 1136
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 100 bits (249), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K ++V G+D+LS +A ENATL FQ L+RSTL +K V +RL+ AFEWL+GE
Sbjct: 1052 GVKELCKKIIVVQGDDRLSIEAQENATLFFQILLRSTLASKCVTLEHRLTETAFEWLMGE 1111
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F A + GEM G + AQS+G
Sbjct: 1112 IESKFTSALVSAGEMAGVVGAQSIG 1136
>gi|188532139|gb|ACD63081.1| RNA polymerase II largest subunit [Asparagus officinalis]
Length = 1009
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 63/84 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L EK +V G+D LS +A +NATLLF L+RST +K V + YRL+ EAFEW++GE
Sbjct: 926 AVDKLQEKLRVVPGDDFLSMEAQKNATLLFNILLRSTFASKRVLKEYRLTREAFEWVIGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 986 IESRFLQSLVAPGEMIGCVAAQSI 1009
>gi|157841445|gb|ABV83185.1| RNA polymerase 2 [Poikilolaimus oxycercus]
Length = 612
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+R+L EK VIV+G+D++S+QA NATLL L+RSTLC+K VAE +RL+ EAFE+++GE
Sbjct: 217 AIRKLSEKLVIVSGDDKISQQAQYNATLLMNILIRSTLCSKQVAEKHRLNQEAFEYILGE 276
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRFQ+A G L AQ LG
Sbjct: 277 IENRFQRAIVXXXXXXGVLXAQXLG 301
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium aggregatum]
Length = 1016
Score = 100 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 49/83 (59%), Positives = 63/83 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL+K V+V G D LS +A +NATLLFQ LVRSTL T+ V E + L+S++F+ L+GEI
Sbjct: 934 VEQLLDKLVVVRGNDPLSVEAQKNATLLFQILVRSTLATRRVLEEFHLNSKSFQHLIGEI 993
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RF QA PGEMVG +AAQS+
Sbjct: 994 EMRFNQAIAHPGEMVGTIAAQSI 1016
>gi|188532157|gb|ACD63090.1| RNA polymerase II largest subunit [Pisum sativum]
Length = 1010
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 63/84 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D LS++A +NATLLF L+RST +K V E YRLS EAFEW+VGE
Sbjct: 927 AIDKLQERLRVVPGDDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ A GEM+G +AAQS+
Sbjct: 987 IESRFLQSLVASGEMIGCVAAQSI 1010
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 100 bits (248), Expect = 2e-19, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR L + V++ G D++S +A NATLL Q LVRSTL TK V E YRL S AF+++VGEI
Sbjct: 918 VRALCDGLVVIPGTDKISVEAQRNATLLMQALVRSTLATKRVLEEYRLDSRAFDYVVGEI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ RF Q+ PGEMVG +AAQS+G
Sbjct: 978 QTRFAQSLVHPGEMVGIIAAQSIG 1001
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ EL+ K I G D++++ NATLLFQ L+RS K V YRL+ AFEW++GE
Sbjct: 992 GLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGE 1051
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA +PGEMVG LAAQS+G
Sbjct: 1052 VEARFQQAVVSPGEMVGTLAAQSIG 1076
>gi|395326417|gb|EJF58827.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1749
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL + V+V GE LSK+A NATLLF+ +R+T T+ V E Y L+ EAFEW++GE+
Sbjct: 1000 VRELCNRLVVVRGEGSLSKEAQLNATLLFRMHLRATFATRRVLERYHLNREAFEWVLGEV 1059
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F QA PGEM G LAAQS+G
Sbjct: 1060 ETKFNQAVAHPGEMCGTLAAQSIG 1083
>gi|242078217|ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1007 AVDKLQERLKVVPGDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIG 1091
>gi|384253754|gb|EIE27228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1566
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/87 (50%), Positives = 62/87 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL +K ++V G D+LS++A NATLLF +R+T +K V +Y+ + EAF+W++GEI
Sbjct: 931 VRELQQKLIVVDGPDELSQEAQRNATLLFLSFLRATFASKRVIRDYKFNREAFDWILGEI 990
Query: 86 ENRFQQAQCAPGEMVGALAAQSLGTST 112
E RF A PGEM+G +AAQS+G T
Sbjct: 991 ETRFHAALAYPGEMIGTVAAQSIGEPT 1017
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+REL+ + ++V G+D+LS +A NAT++F+ +R+T TK V E Y L+ +AFEW++GEI
Sbjct: 1004 LRELMSRLIVVRGDDELSLEAQNNATMMFKMHLRATFATKPVLEEYHLTKQAFEWVLGEI 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF Q+ PGEM G LAAQS+G
Sbjct: 1064 ETRFNQSLVQPGEMCGTLAAQSIG 1087
>gi|225459758|ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1008 AVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIG 1092
>gi|413917378|gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
Length = 1850
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1007 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1067 IESRFLQSLVAPGEMIGCVAAQSIG 1091
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 679 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 738
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 739 IESRFLQSLVAPGEMIGCVAAQSIG 763
>gi|297603848|ref|NP_001054670.2| Os05g0151000 [Oryza sativa Japonica Group]
gi|222630225|gb|EEE62357.1| hypothetical protein OsJ_17146 [Oryza sativa Japonica Group]
gi|255676030|dbj|BAF16584.2| Os05g0151000 [Oryza sativa Japonica Group]
Length = 1834
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 1009 AIDKLQERLKVVPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIG 1093
>gi|218200495|gb|EEC82922.1| hypothetical protein OsI_27866 [Oryza sativa Indica Group]
Length = 1449
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 978 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1037
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1038 IESRFLQSLVAPGEMIGCVAAQSIG 1062
>gi|54291834|gb|AAV32202.1| putative RNA polymerase II [Oryza sativa Japonica Group]
Length = 1741
Score = 99.8 bits (247), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 956 AIDKLQERLKVVPGDDDISIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 1015
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1016 IESRFLQSLVAPGEMIGCVAAQSIG 1040
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 99.4 bits (246), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 66/86 (76%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+G+RE+L++ V++ G+D +S++A NATLLF+ +RS LC K+V E + ++ EA+EW++G
Sbjct: 1000 VGLREVLDRLVVIRGDDPISREAQMNATLLFKIHLRSYLCAKMVIEQHHINKEAWEWILG 1059
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
EIE +F ++ PGEM G LAAQS+G
Sbjct: 1060 EIEGQFARSVANPGEMCGTLAAQSIG 1085
>gi|13111542|gb|AAK12366.1| RNA polymerase II largest subunit [Milnesium tardigradum]
Length = 91
Score = 99.4 bits (246), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 57/72 (79%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV GED+LSK+A ENATLL L+RSTLC + VAE + L+SE FEWL+GE
Sbjct: 20 GVRELCKKLVIVKGEDRLSKEAQENATLLMSTLLRSTLCARRVAEEFHLNSEXFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE+RF AQ AP
Sbjct: 80 IESRFALAQAAP 91
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 99.0 bits (245), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +L E+ ++V G+D LS+ A +NATLLF+ L+RS T+ V E + L+ EAF W++GEI
Sbjct: 1010 VHDLCERIIVVRGDDALSRAAQDNATLLFRILLRSNFATRRVLEEFHLNREAFVWVLGEI 1069
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF Q+ APGEM G LAAQS+G
Sbjct: 1070 EARFNQSLAAPGEMCGTLAAQSIG 1093
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR L+++ +IV G+D +S +A ENATLLF+ +RST T+ V E Y L+ EAFEW++GE+
Sbjct: 1000 VRALIDRLLIVRGDDPISIEAQENATLLFRIHLRSTFATRPVLEEYHLNREAFEWVLGEV 1059
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1060 ETKFMQSVANPGEMCGTLAAQSIG 1083
>gi|307106775|gb|EFN55020.1| hypothetical protein CHLNCDRAFT_134851 [Chlorella variabilis]
Length = 510
Score = 99.0 bits (245), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/87 (52%), Positives = 61/87 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL ++ +V G+D LS++A NATLLF L+RSTL +K V Y+L+ A+ WL GE+
Sbjct: 258 VRELCDRLQVVEGQDLLSREAQRNATLLFHTLLRSTLASKRVCSEYKLTRAAWHWLTGEV 317
Query: 86 ENRFQQAQCAPGEMVGALAAQSLGTST 112
E RF A APGE+VG +AAQS+G T
Sbjct: 318 ETRFMNAMAAPGEVVGTVAAQSIGEPT 344
>gi|157841396|gb|ABV83152.1| RNA polymerase 2 [Pellioditis mediterranea]
Length = 276
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 59/72 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR++ EK +IVAGED++SKQA NATLL L+RSTLC+K +A +Y+L+SEAFEWL+GE
Sbjct: 204 GVRDMSEKLIIVAGEDRISKQAQYNATLLMNILLRSTLCSKKMAVSYKLNSEAFEWLLGE 263
Query: 85 IENRFQQAQCAP 96
+E RF+QA P
Sbjct: 264 VETRFKQAIAHP 275
>gi|188532159|gb|ACD63091.1| RNA polymerase II largest subunit [Saruma henryi]
Length = 1009
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V GED +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 926 AVDKLQERLKVVPGEDLMSMEAQKNATLFFNILLRSTFSSKRVLKEYRLTREAFEWVIGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 986 IESRFLQSLVAPGEMIGCVAAQSI 1009
>gi|409051067|gb|EKM60543.1| hypothetical protein PHACADRAFT_246551 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1753
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+R L E+ V+V G+D LSK+A NATLLF+ +R+T T+ V E Y L+ EA EW++GE
Sbjct: 1002 AIRALCERLVVVRGDDPLSKEAQANATLLFRMHLRATFATRRVLERYHLNKEALEWVLGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F Q+ PGEM G LAAQS+G
Sbjct: 1062 IESKFNQSLAHPGEMCGTLAAQSIG 1086
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/84 (60%), Positives = 60/84 (71%), Gaps = 9/84 (10%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL K VIV GED++SKQA ENATLLF L+RS L +K V E Y L+SEAF+WL+GE+
Sbjct: 1001 VCELSRKLVIVHGEDRISKQAQENATLLFNILLRSVLSSKRVTEEYHLTSEAFDWLIGEV 1060
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ PGEMVG LAAQSLG
Sbjct: 1061 Q---------PGEMVGPLAAQSLG 1075
>gi|157841409|gb|ABV83161.1| RNA polymerase 2 [Pristionchus pacificus]
Length = 181
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVRE+ +K +IV GED++SKQA NATLL LVRSTLC+K +AE +RL+SEAFEWL+GE
Sbjct: 114 GVREVSKKLIIVGGEDRISKQAQYNATLLMNILVRSTLCSKQLAEKHRLNSEAFEWLLGE 173
Query: 85 IENRFQQA 92
IE RFQQA
Sbjct: 174 IEXRFQQA 181
>gi|313224155|emb|CBY43597.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 98.6 bits (244), Expect = 4e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 66/84 (78%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V E+ EK +IV+G+D+LS +A NATLLF+ +R++L ++ V + Y L+SEAF+W++GEI
Sbjct: 173 VHEMSEKLIIVSGKDRLSLEAQNNATLLFKIHLRASLASRRVIQEYFLNSEAFDWVLGEI 232
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E++F A PGEM+GALAAQS+G
Sbjct: 233 ESKFNAAIVHPGEMIGALAAQSIG 256
>gi|13123023|gb|AAK12743.1| RNA polymerase II largest subunit [parasitid 'Pas']
Length = 91
Score = 98.6 bits (244), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV ++++K +IV GED LS QANENAT LF+ L+RSTLC++ V + +RLS+EAF+WL+GE
Sbjct: 20 GVEDVIKKLIIVPGEDHLSIQANENATFLFRSLLRSTLCSRRVGQEFRLSTEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF Q+Q P
Sbjct: 80 IEARFHQSQGQP 91
>gi|316997019|dbj|BAJ52637.1| RNA polymerase II largest subunit [Monosiga ovata]
Length = 1289
Score = 98.6 bits (244), Expect = 5e-19, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L++K VIV G DQLS A N+TL F +++S L K V +++RL+ AF W++GE
Sbjct: 527 GVRDLIKKLVIVPGNDQLSATAQHNSTLFFSSMLKSVLSAKKVLKDHRLTQSAFSWILGE 586
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RF A+ PGEMVGALAA+ LG
Sbjct: 587 VEQRFMLARAHPGEMVGALAAECLG 611
>gi|357144975|ref|XP_003573479.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Brachypodium distachyon]
Length = 1862
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ E+FEW++GE
Sbjct: 1009 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIG 1093
>gi|326498629|dbj|BAK02300.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1859
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ E+FEW++GE
Sbjct: 1008 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1068 IESRFLQSLVAPGEMIGCVAAQSIG 1092
>gi|448082723|ref|XP_004195204.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359376626|emb|CCE87208.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1758
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++L K ++V G+ L K+A NATLLFQCL+RS L ++ V E Y+L+ +FEW++GEI
Sbjct: 996 VQDLCSKLLVVRGDKALVKEAQNNATLLFQCLLRSRLASRRVVEEYKLNRISFEWVLGEI 1055
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +FQ++ PGEMVG +AAQS+G
Sbjct: 1056 ETQFQKSIVHPGEMVGVIAAQSIG 1079
>gi|188532147|gb|ACD63085.1| RNA polymerase II largest subunit [Illicium parviflorum]
Length = 1013
Score = 98.2 bits (243), Expect = 5e-19, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW+VGE
Sbjct: 930 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVVGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|448087303|ref|XP_004196296.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
gi|359377718|emb|CCE86101.1| Piso0_005751 [Millerozyma farinosa CBS 7064]
Length = 1772
Score = 98.2 bits (243), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++L K ++V G+ L K+A NATLLFQCL+RS L ++ V E Y+L+ +FEW++GEI
Sbjct: 996 VQDLCSKLLVVRGDKALVKEAQNNATLLFQCLLRSRLASRRVIEEYKLNKISFEWVLGEI 1055
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +FQ++ PGEMVG +AAQS+G
Sbjct: 1056 ETQFQKSIVHPGEMVGVIAAQSIG 1079
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 97.8 bits (242), Expect = 6e-19, Method: Composition-based stats.
Identities = 41/86 (47%), Positives = 66/86 (76%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IG+R +L++ +++ G+D +S++A NATLLF+ +RS LC+K+V E + ++ EA+EW++G
Sbjct: 1000 IGLRNVLDRLIVIRGDDPISREAQMNATLLFKIHLRSYLCSKMVIEQHHINKEAWEWILG 1059
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
EIE +F ++ PGEM G LAAQS+G
Sbjct: 1060 EIEGQFARSVANPGEMCGTLAAQSIG 1085
>gi|120561217|gb|ABM26994.1| RNA polymerase II largest subunit, partial [Mucor hiemalis]
Length = 1009
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L ++ ++V G D++S + +NATLLF L+RST K V E + L+S+AFEW++GE
Sbjct: 921 GVNALAQRLLVVRGSDKISNETQKNATLLFGILLRSTFSVKRVVEEFHLTSQAFEWILGE 980
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF + APGEMVG +AAQS+G
Sbjct: 981 IESRFLTSIVAPGEMVGTIAAQSIG 1005
>gi|33326213|gb|AAQ08516.1| RNA polymerase II largest subunit [Magnolia x soulangeana]
Length = 1010
Score = 97.8 bits (242), Expect = 7e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 927 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 987 IESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|38232427|gb|AAR15049.1| RNA polymerase II largest subunit [Ooperipatellus nanus]
Length = 91
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED+LS+QA ENATL LVR+TLC+K V++ ++LS+EAFEWL+GE
Sbjct: 20 GVRDLSKKLIIVPGEDRLSRQAQENATLCMNILVRATLCSKRVSKEHKLSTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF QAQ P
Sbjct: 80 IETRFAQAQAQP 91
>gi|188532155|gb|ACD63089.1| RNA polymerase II largest subunit [Persea americana]
Length = 1009
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 926 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 986 IESRFLQSLVAPGEMIGCVAAQSI 1009
>gi|188532151|gb|ACD63087.1| RNA polymerase II largest subunit [Nicotiana tabacum]
Length = 1010
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RS L +K V + YRLS EAF+W++GE
Sbjct: 927 AVDKLQERLKVVPGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLSREAFDWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 987 IESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|188532149|gb|ACD63086.1| RNA polymerase II largest subunit [Liriodendron tulipifera]
Length = 1010
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 927 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 987 IESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|188532145|gb|ACD63084.1| RNA polymerase II largest subunit [Drimys winteri]
Length = 1010
Score = 97.8 bits (242), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 927 AVDKLQERLKVVPGDDPISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 987 IESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 97.4 bits (241), Expect = 9e-19, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V L + V++ G D LS++A ENATLLF L+RS+L + + E + L+ EAF+W++GEI
Sbjct: 1001 VHALCRRLVVIRGSDVLSQEAQENATLLFNILLRSSLTVRSIIEEHHLNREAFDWVIGEI 1060
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF Q+ APGEM G LAAQS+G
Sbjct: 1061 ETRFNQSIVAPGEMCGTLAAQSIG 1084
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 62/84 (73%), Gaps = 1/84 (1%)
Query: 26 VRELLEKCV-IVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ L E + ++ GEDQLS +A NATLLFQ +R++L TK V E + L+ EAF+WL+ E
Sbjct: 930 VKSLTESRIPVIRGEDQLSVEAQTNATLLFQIHLRASLATKRVIEEFHLTKEAFDWLLAE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE RF++AQ PGEMVG LAAQS+
Sbjct: 990 IETRFKRAQVNPGEMVGVLAAQSI 1013
>gi|58395863|gb|AAW72748.1| RNA polymerase II largest subunit [Climacodon septentrionalis]
Length = 253
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/83 (54%), Positives = 60/83 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL E+ V+V GED LSK+A NATL+F +R+T + V E Y L+ EAFEW++GE+
Sbjct: 171 VRELCERLVVVRGEDPLSKEAQANATLMFSIHLRATFAARRVLERYHLNREAFEWVLGEV 230
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E++F Q+ PGEM G LAAQS+
Sbjct: 231 ESKFNQSLAHPGEMCGTLAAQSI 253
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 97.4 bits (241), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K ++V G D LS +A ENATL FQ L+RS L +K V +RL+ AFEWL+GE
Sbjct: 1021 GVKELCKKIIVVQGNDPLSLEAQENATLFFQILLRSALASKCVTLEHRLTETAFEWLLGE 1080
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F + + GEM G +AAQS+G
Sbjct: 1081 IESKFTSSLVSAGEMAGVVAAQSIG 1105
>gi|33326211|gb|AAQ08515.1| RNA polymerase II largest subunit [Zea mays]
Length = 1009
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 926 AIDKLQERLKVVPGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 986 IESRFLQSLVAPGEMIGCVAAQSI 1009
>gi|297271809|ref|XP_001118060.2| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Macaca
mulatta]
Length = 1097
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA G +G L G
Sbjct: 1072 IESKFNQAIFGFGVCIGVLQQNPWG 1096
>gi|157841447|gb|ABV83186.1| RNA polymerase 2 [Bursilla sp. PS1179]
Length = 274
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 57/68 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G+D++S+QA NATLL L+RSTLC+K +AE YRL+ E FEWL+GE
Sbjct: 207 GVRELSKKLIIVSGDDRISQQAQYNATLLMNILLRSTLCSKQMAEKYRLNQEGFEWLLGE 266
Query: 85 IENRFQQA 92
IE+RFQQA
Sbjct: 267 IEHRFQQA 274
>gi|68300816|gb|AAY89349.1| RNA polymerase II largest subunit [Antirrhinum majus]
Length = 780
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RS L +K V + YRL+ EAFEW++GE
Sbjct: 685 AVDKLQERLKVVVGDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGE 744
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ A GEM+G +AAQS+G
Sbjct: 745 IESRFLQSLVAAGEMIGCVAAQSIG 769
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +L + ++V G+D LS+ A NATLLF+ L+RS T+ V E + LS EAF W++GEI
Sbjct: 926 VNDLCNRLIVVRGDDALSRAAQXNATLLFRILLRSNFATRRVLEEFHLSREAFVWVLGEI 985
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF Q+ APGEM G LAAQS+G
Sbjct: 986 EARFNQSLAAPGEMCGTLAAQSIG 1009
>gi|316997001|dbj|BAJ52628.1| RNA polymerase II largest subunit [Stephanoeca diplocostata]
Length = 999
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+L+++ V+V G D LS+ A NAT+ L+R+ L TK + RLS EAF+W+VGE+
Sbjct: 511 VRDLIKRLVVVKGSDPLSQDAQFNATIFMTSLIRAHLSTKQLMTKSRLSHEAFKWIVGEV 570
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E F QAQ PGEMVGALAAQSLG
Sbjct: 571 EASFMQAQSNPGEMVGALAAQSLG 594
>gi|33326205|gb|AAQ08512.1| RNA polymerase II largest subunit [Cycas revoluta]
Length = 1013
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 930 AVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|33326203|gb|AAQ08511.1| RNA polymerase II largest subunit [Zamia muricata]
Length = 1013
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 930 AVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|45935331|gb|AAS79687.1| RNA polymerase II large subunit [Ginkgo biloba]
Length = 1013
Score = 97.1 bits (240), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 930 AVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|188532143|gb|ACD63083.1| RNA polymerase II largest subunit [Ceratophyllum demersum]
Length = 1010
Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+R+T +K V + YRL+ EAFEW++GE
Sbjct: 927 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 987 IESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|188532141|gb|ACD63082.1| RNA polymerase II largest subunit [Beta vulgaris]
Length = 1012
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+R+T +K V + YRL+ EAFEW++GE
Sbjct: 929 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRTTFASKRVLKEYRLTREAFEWVIGE 988
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 989 IESRFLQSLVAPGEMIGCVAAQSI 1012
>gi|80973336|gb|ABB53409.1| RNA polymerase II largest subunit [Sedum burrito]
Length = 240
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L EK +V GED LS +A +NATLLF L+RST +K V YRL+ EAFEW+VGE
Sbjct: 160 AIDKLQEKLKVVPGEDSLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEWVVGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|120561221|gb|ABM26996.1| RNA polymerase II largest subunit, partial [Funneliformis mosseae]
Length = 1054
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/101 (43%), Positives = 72/101 (71%)
Query: 9 PAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVA 68
P+Q + S + + + + ELL K +V G+D++S +A NATLLF+ L+RS L +K V
Sbjct: 949 PSQRTKSDLQFVDVIDSIDELLSKLEVVKGKDRISVEAQSNATLLFKILIRSWLASKRVI 1008
Query: 69 ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+ + L+ +A +W++GEIE+RF+++ +PGEMVG +AAQS+G
Sbjct: 1009 DEFHLNQQALKWILGEIESRFRRSLVSPGEMVGTVAAQSIG 1049
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VREL ++ V+V GED LS +A ENATL+F+ +R+T T+ V E + L+ EAF+W++GE
Sbjct: 996 AVRELEKRLVVVRGEDPLSYEAQENATLMFKMHLRATFATRRVLEKFHLTREAFDWVLGE 1055
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E +F Q+ PGEM G L+AQS+G
Sbjct: 1056 VEAKFNQSVVHPGEMCGTLSAQSIG 1080
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 96.7 bits (239), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VREL ++ V+V GED LS +A ENATL+F+ +R+T T+ V E + L+ EAF+W++GE
Sbjct: 996 AVRELEKRLVVVRGEDPLSYEAQENATLMFKMHLRATFATRRVLEKFHLTREAFDWVLGE 1055
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E +F Q+ PGEM G L+AQS+G
Sbjct: 1056 VEAKFNQSVVHPGEMCGTLSAQSIG 1080
>gi|120561223|gb|ABM26997.1| RNA polymerase II largest subunit, partial [Gigaspora gigantea]
Length = 1039
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 42/101 (41%), Positives = 73/101 (72%)
Query: 9 PAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVA 68
P++++ + + I + V E++ + V+V G DQ+S +A NAT LF+ L+RS L ++ V
Sbjct: 935 PSRWTTTDLQYIDVINSVEEVMSRLVVVKGNDQISHEAQTNATTLFKILLRSWLASRRVI 994
Query: 69 ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
E + L+S+A +W++GE+E+RF+++ +PGEMVG +AAQS+G
Sbjct: 995 EEFHLNSQALKWVLGEVESRFRKSLVSPGEMVGTVAAQSIG 1035
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+L+++ +V G D+LS +A NA L+ Q +R+TL K V E Y L + AF+W++GEI
Sbjct: 937 VRQLIDRLTVVRGNDKLSIEAQNNAILVLQIHLRATLSPKRVIEEYHLDANAFDWVIGEI 996
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF++A APGEMVG LAAQS+G
Sbjct: 997 ETRFKRALVAPGEMVGTLAAQSIG 1020
>gi|21280521|gb|AAM45153.1|AF395835_1 RNA polymerase II largest subunit [Cercomonas ATCC50319]
Length = 1014
Score = 96.3 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ L E+ ++V G D LS QA NAT LF+ ++RS L K V ++YRL+ +AF WL+GEI
Sbjct: 924 VKSLAERLIVVRGTDPLSLQAQTNATTLFKIMLRSVLSAKRVLKDYRLNRDAFSWLIGEI 983
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF QA PGE+VG++AAQ++G
Sbjct: 984 EARFNQAIVHPGEVVGSIAAQAIG 1007
>gi|38232421|gb|AAR15046.1| RNA polymerase II largest subunit [Macrobiotus islandicus]
Length = 91
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/72 (58%), Positives = 57/72 (79%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ EL++K +IV GED+LS++A ENAT+L +RSTLC++ +AE YRL++EAFEWL+GE
Sbjct: 20 GLSELMKKLIIVKGEDRLSREAQENATILMNTALRSTLCSRRMAEEYRLTTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF Q Q P
Sbjct: 80 IETRFAQXQVQP 91
>gi|299755292|ref|XP_001828577.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
gi|298411158|gb|EAU93247.2| RNA polymerase II large subunit [Coprinopsis cinerea okayama7#130]
Length = 1745
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ EL ++ VIV G+D LSK+A +N+TLLF+ +R+T + V E RL+ EAFEW++GEI
Sbjct: 1006 IHELGKRLVIVRGDDPLSKEAQDNSTLLFRMHLRATFAARKVIEQMRLTREAFEWILGEI 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1066 ETKFNQSIAHPGEMCGTLAAQSIG 1089
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 95.9 bits (237), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 63/83 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ +L E+ +V GED++S +A N+TLLFQ L+RST T+ + E Y L ++AF+W++GEI
Sbjct: 765 LNKLSERLKVVNGEDKISIEAQRNSTLLFQILLRSTPATRRLIEEYHLDTQAFKWILGEI 824
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RFQ++ APGEMVG +AAQS+
Sbjct: 825 EERFQRSLVAPGEMVGTVAAQSI 847
>gi|80973302|gb|ABB53392.1| RNA polymerase II largest subunit [Dionaea muscipula]
Length = 240
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 58/81 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A NATL F L+RSTL K V + YRLS EAFEW++GE
Sbjct: 160 AVDKLQERLRVVPGDDHLSDEAQRNATLFFNILLRSTLACKRVLQEYRLSREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|33326215|gb|AAQ08517.1| RNA polymerase II largest subunit [Nymphaea odorata]
Length = 1013
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V GED +S +A +NATL F L+RST +K V++ YRL+ EAF+W++GE
Sbjct: 930 AVDKLQERLKVVPGEDAMSMEAQKNATLFFNILLRSTFASKRVSKEYRLTREAFDWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ A GEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAAGEMIGCVAAQSI 1013
>gi|38232449|gb|AAR15060.1| RNA polymerase II largest subunit [Thulinius stephaniae]
Length = 91
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 58/72 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ ELL+K V+V GED+LS++A ENAT+L ++RSTLC+K VAE Y L++EAFEWL+GE
Sbjct: 20 GLNELLKKLVVVKGEDRLSREAQENATVLINTMLRSTLCSKRVAEEYHLNTEAFEWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE+RF Q+ P
Sbjct: 80 IESRFXQSLVQP 91
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 46/84 (54%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ L + V+V G D+LS++A +NAT+L Q LVRSTL TK V + Y L AF+++VGEI
Sbjct: 933 VKSLCTQLVVVPGTDKLSREAQKNATVLMQILVRSTLATKRVLQEYCLDRRAFDYVVGEI 992
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ RF AQ PGEMVG +AAQS+G
Sbjct: 993 KTRFATAQVHPGEMVGIIAAQSIG 1016
>gi|80973316|gb|ABB53399.1| RNA polymerase II largest subunit [Kalanchoe tomentosa]
Length = 240
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS +A +NATLLF L+RST +K V YRL+ EAFEW+VGE
Sbjct: 160 AIDKLQERLKVVPGEDSLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEWVVGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces boomerangus]
Length = 1024
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+R+L ++ V++ G+D+LS +A NATLLF+ +RS L TK V E + L + +F+W++GE
Sbjct: 936 GIRQLADRLVVIRGDDKLSTEAQMNATLLFKIHLRSFLSTKRVIEEFHLDTNSFDWIIGE 995
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E F++A +PGEMVG LAAQS+G
Sbjct: 996 VEACFKRAIVSPGEMVGTLAAQSIG 1020
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix frontalis]
Length = 1004
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 44/82 (53%), Positives = 61/82 (74%)
Query: 28 ELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIEN 87
ELL++ V+V G+D+LSK+A N+T+ F L+++ L TK + E Y L+ AF+WL+GEIE
Sbjct: 919 ELLKRLVVVRGDDKLSKEAQINSTINFFALIKTCLSTKRILEYYHLNKAAFDWLIGEIEV 978
Query: 88 RFQQAQCAPGEMVGALAAQSLG 109
RF QA PGEMVG +AAQS+G
Sbjct: 979 RFNQALVQPGEMVGTIAAQSIG 1000
>gi|33326217|gb|AAQ08518.1| RNA polymerase II largest subunit [Amborella trichopoda]
Length = 1013
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAF+W++GE
Sbjct: 930 AVDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM 1558]
Length = 1808
Score = 95.5 bits (236), Expect = 4e-18, Method: Composition-based stats.
Identities = 45/81 (55%), Positives = 57/81 (70%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L ++ VIV G+D+ SK NATLLF LVRS L T+ + E + L+ EAFEW++GEIE
Sbjct: 1012 LCDRLVIVRGDDKFSKIHQHNATLLFNILVRSHLATRRILEEHHLTREAFEWVIGEIEQI 1071
Query: 89 FQQAQCAPGEMVGALAAQSLG 109
F +A C P EMVG LAAQS+G
Sbjct: 1072 FNKAVCDPAEMVGTLAAQSIG 1092
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 95.1 bits (235), Expect = 4e-18, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 64/85 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL EK +++ G++++ +QA ++A LF CLVRS L T+ V + YRL+ E+F+W++
Sbjct: 989 GVRELQEKLLVLRGKNEIVQQAQQDAITLFCCLVRSRLATRRVIQEYRLTKESFDWVINN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F ++ PGEMVG LAAQS+G
Sbjct: 1049 IESQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ L K +++ G+++L +A +NAT LFQCLVRS L T+ V E YRL+S AF W+ +I
Sbjct: 949 VQRLCSKLLVLRGDNRLVSEAQQNATALFQCLVRSRLTTRRVIEEYRLTSVAFYWVTAQI 1008
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E++FQ++ PGEMVG +AAQS+G
Sbjct: 1009 ESQFQRSVVHPGEMVGVVAAQSIG 1032
>gi|3172136|gb|AAC18417.1| RNA polymerase II largest subunit [Acanthamoeba castellanii]
Length = 1569
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 61/81 (75%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L+E+ V++ G+D +SK+A NA LLF L+R TL ++ V + YRL +++WL+GEI +R
Sbjct: 923 LIERLVVIPGQDDISKEAQANAILLFSILLRFTLASRRVLQEYRLDQISWDWLLGEITDR 982
Query: 89 FQQAQCAPGEMVGALAAQSLG 109
F ++ C PGEM+GALAAQS+G
Sbjct: 983 FYKSLCDPGEMIGALAAQSIG 1003
>gi|229428543|gb|ACQ65686.1| RNA polymerase II largest subunit [Alyxoria varia]
Length = 979
Score = 95.1 bits (235), Expect = 5e-18, Method: Composition-based stats.
Identities = 46/83 (55%), Positives = 63/83 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELLE+ VIV G+D LS++A E+AT+L + L+RS L K V E Y L+ AF+ ++G+I
Sbjct: 897 VRELLERLVIVRGDDPLSQEAQESATILVKALIRSRLAFKRVVEEYSLNRLAFDNIIGDI 956
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E+RF +A +PGEMVG LAAQS+
Sbjct: 957 ESRFTRAAVSPGEMVGVLAAQSI 979
>gi|13123939|gb|AAK12771.2| RNA polymerase II largest subunit [Zercon sp. 'Zer']
Length = 91
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 54/72 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV L++K +IV G D LS QANENAT LF+ L+RSTL ++ V + +RLSSEAF+WL+GE
Sbjct: 20 GVEXLVKKLIIVPGXDHLSVQANENATFLFRALLRSTLSSRRVGQEFRLSSEAFDWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RF Q Q P
Sbjct: 80 IETRFHQXQGZP 91
>gi|45935327|gb|AAS79685.1| RNA polymerase II large subunit [Taxus canadensis]
Length = 1013
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + Y L+ EAFEW+VGE
Sbjct: 930 AIDKLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|80973314|gb|ABB53398.1| RNA polymerase II largest subunit [Iresine herbstii]
Length = 240
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 61/81 (75%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V GED LSK+A +NATL F L+RSTL +K V + ++L+ EAFEW+VGE
Sbjct: 160 AVDKLQERLKVVPGEDFLSKEAQKNATLFFNILLRSTLASKRVLKEFKLNREAFEWVVGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|57472133|gb|AAW51143.1| RNA polymerase II largest subunit [Clavaria zollingeri]
Length = 253
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 61/83 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+EL ++ V+V G+D LS++A +NATL+F+ +R+T + V E + L+ EAFEW++GEI
Sbjct: 171 VKELCKRLVVVPGDDPLSREAQDNATLMFRMHLRATFAARRVLEEFHLNREAFEWVIGEI 230
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RF Q+ PGEM G LAAQS+
Sbjct: 231 EARFNQSLVNPGEMCGTLAAQSI 253
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 94.7 bits (234), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 61/83 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+R+L + +++ G D L+++A +NATLLFQ +RST +K V + Y L+S A +W++GEI
Sbjct: 940 IRKLADSLIVLRGNDSLTREAQQNATLLFQIYLRSTFPSKRVLQEYHLNSNALDWIIGEI 999
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RF++A PGEMVG LAAQS+
Sbjct: 1000 ETRFKKAIVNPGEMVGTLAAQSI 1022
>gi|80973312|gb|ABB53397.1| RNA polymerase II largest subunit [Ibervillea sonorae]
gi|80973332|gb|ABB53407.1| RNA polymerase II largest subunit [Kedrostis africana]
Length = 240
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V GED LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|45935325|gb|AAS79684.1| RNA polymerase II large subunit [Thuja occidentalis]
Length = 1013
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + Y L+ EAFEW+VGE
Sbjct: 930 AIDKLQERLKVVPGDDLISIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSIVAPGEMIGCVAAQSI 1013
>gi|113957551|gb|ABI49122.1| RNA polymerase II largest subunit [Pleopsidium gobiense]
Length = 1017
Score = 94.4 bits (233), Expect = 8e-18, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL++ V+V G+D+LSK+A +NATLLF+ +RS L K V Y L+ AF+ ++GE
Sbjct: 926 AVRDLLDRLVVVRGDDKLSKEAQDNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGE 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 986 IESRFCRAAVNPGEMVGVLAAQSIG 1010
>gi|449550549|gb|EMD41513.1| hypothetical protein CERSUDRAFT_110068 [Ceriporiopsis subvermispora
B]
Length = 1749
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+L + ++V G+ L ++A +NAT+LF+ +R+T T+ V E Y L+ EAFEW++GE
Sbjct: 1002 AVRDLTHRLLVVRGDSALGREAQDNATMLFRIHIRATFATRRVLEKYHLNREAFEWVLGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEM G LAAQS+G
Sbjct: 1062 IEAKFNQSLAHPGEMCGTLAAQSIG 1086
>gi|45935329|gb|AAS79686.1| RNA polymerase II large subunit [Podocarpus macrophyllus]
Length = 1013
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ L E+ +V G+D +S +A +NATL F L+RST +K V + Y L+ EAFEW+VGE
Sbjct: 930 AIDRLQERLKVVPGDDLISIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFEWVVGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|33326207|gb|AAQ08513.1| RNA polymerase II largest subunit [Pinus nigra]
Length = 1013
Score = 94.4 bits (233), Expect = 9e-18, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ L E+ +V G+D +S +A +NATL F L+RST +K V + Y L+ EAFEW+VGE
Sbjct: 930 AIDRLQERLKVVPGDDLMSIEAQKNATLFFNILLRSTFASKRVLKEYHLTREAFEWVVGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF Q+ APGEM+G +AAQS+
Sbjct: 990 IESRFLQSLVAPGEMIGCVAAQSI 1013
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V++LL + +I+ G+D LS ++ ENATLLF+ +RS L K VA+ YRL+ AF+ ++GE
Sbjct: 929 AVKDLLSRLIIIRGDDPLSIESQENATLLFKIQLRSRLAFKRVAKQYRLNKLAFQHVLGE 988
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 989 IESRFSRAAVNPGEMVGVLAAQSIG 1013
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 94.0 bits (232), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+LL + +IV G D++SK+ + AT LFQ LVR L + + E + L+SEAF+W++GE
Sbjct: 913 GVRDLLSRLIIVRGNDRISKEHQQQATGLFQILVRMKLSVRKLIEVHHLTSEAFDWVIGE 972
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ GEM G LAAQS+G
Sbjct: 973 IESRFTQSVAHAGEMCGTLAAQSIG 997
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 46/99 (46%), Positives = 65/99 (65%)
Query: 11 QYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAEN 70
+Y S I + V+EL +K +V G+ +A EN+TLLFQCL+RS L T+ V E
Sbjct: 899 RYKASDLTIEEIVKSVQELCKKFTVVRGDGGCLTEARENSTLLFQCLIRSKLATRRVLEE 958
Query: 71 YRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
Y+L+ +AFEW+VG I +F ++ PGEMVG +AAQS+G
Sbjct: 959 YKLNKDAFEWVVGTIAQQFARSLVNPGEMVGVVAAQSIG 997
>gi|80973330|gb|ABB53406.1| RNA polymerase II largest subunit [Quercus coccinea]
Length = 240
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V GED LS +A +NATL F L+RST +K V E Y+L+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGEDLLSVEAQKNATLFFNILLRSTFASKRVLEEYKLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|407925500|gb|EKG18511.1| RNA polymerase II heptapeptide repeat eukaryotic [Macrophomina
phaseolina MS6]
Length = 1756
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE+L++ V+V G+D LS++A ENAT LF+ +RS L K + Y L+ AFE ++G++
Sbjct: 1001 VREVLDRLVVVRGDDSLSREAQENATFLFKAQLRSRLAFKRLVREYSLNKLAFENVLGDL 1060
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1061 ENRFNRAIVSPGEMVGVLAAQSIG 1084
>gi|157841464|gb|ABV83198.1| RNA polymerase 2 [Protorhabditis sp. JB122]
Length = 595
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/73 (58%), Positives = 54/73 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL K +IV+GED++SKQA NATLL L+RSTLC+K + +Y+L SEAFEWL+GE
Sbjct: 181 GVRELSRKLIIVSGEDRISKQAQYNATLLMNILLRSTLCSKKMGMSYKLDSEAFEWLLGE 240
Query: 85 IENRFQQAQCAPG 97
+E RF PG
Sbjct: 241 VEQRFNSXIAQPG 253
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 94.0 bits (232), Expect = 1e-17, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V++L + V++ GED+L+++A NA+L F+ VR+TL ++ V E + L+ EAFEW++GE
Sbjct: 1000 AVQQLASRLVVINGEDELTREAQLNASLTFRMHVRATLASRRVLEQFHLNREAFEWVLGE 1059
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEM G LAAQS+G
Sbjct: 1060 IETKFNQSLVHPGEMCGTLAAQSIG 1084
>gi|83320446|gb|ABC02850.1| RNA polymerase II largest subunit, partial [Mortierella verticillata]
Length = 1016
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 61/83 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
++ L ++ V+V G D++S +A +NATLLF+ L+RSTL + V E Y L+ EAF+W+VGEI
Sbjct: 934 IKNLEKQLVVVRGTDRISVEAQDNATLLFRMLIRSTLAVRRVIEEYHLTREAFDWVVGEI 993
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
+RF A PGEMVG +AAQS+
Sbjct: 994 GSRFAHAIVNPGEMVGTVAAQSI 1016
>gi|80973306|gb|ABB53394.1| RNA polymerase II largest subunit [Hibbertia cuneiformis]
Length = 240
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973308|gb|ABB53395.1| RNA polymerase II largest subunit [Hibbertia aspera]
Length = 240
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973310|gb|ABB53396.1| RNA polymerase II largest subunit [Hibbertia scandens]
Length = 240
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|157841414|gb|ABV83165.1| RNA polymerase 2 [Choriorhabditis dudichi]
Length = 380
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/64 (67%), Positives = 52/64 (81%)
Query: 46 ANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAA 105
A NATLL L+RSTLC+K +A ++L++EAFEWL+GE+E RFQQA PGEMVGALAA
Sbjct: 1 AQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAA 60
Query: 106 QSLG 109
QSLG
Sbjct: 61 QSLG 64
>gi|34597030|gb|AAQ77090.1| RNA polymerase II largest subunit [Ballophilus australiae]
Length = 91
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 51/72 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL K V GED LS+QAN NATLLF CL RSTL TK VAE + LS EAF WL+GE
Sbjct: 20 GVXELSXKLXXVXGEDXLSRQANXNATLLFNCLXRSTLXTKRVAEEFXLSXEAFXWLLGE 79
Query: 85 IENRFQQAQCAP 96
IE RFQ +Q P
Sbjct: 80 IETRFQXSQVQP 91
>gi|412992604|emb|CCO18584.1| RNA polymerase II largest subunit [Bathycoccus prasinos]
Length = 1667
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL K ++V G+D+LS +A NAT+LF VR+ L TK V + ++L AF W++GEI
Sbjct: 958 VRDLLSKLIVVPGKDELSIEAQRNATILFYAQVRACLATKRVMKEHKLGVSAFNWVIGEI 1017
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+QA PG+ +G +AAQS+G
Sbjct: 1018 ESRFKQALAPPGDGIGTVAAQSIG 1041
>gi|80973300|gb|ABB53391.1| RNA polymerase II largest subunit [Dillenia suffruticosa]
Length = 240
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLRSTLASKRVLKEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|345309516|ref|XP_003428845.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1, partial
[Ornithorhynchus anatinus]
Length = 988
Score = 93.6 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/67 (64%), Positives = 55/67 (82%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+EL +K VIV GED LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GEI
Sbjct: 921 VKELSKKLVIVNGEDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEI 980
Query: 86 ENRFQQA 92
E++F QA
Sbjct: 981 ESKFNQA 987
>gi|80973296|gb|ABB53389.1| RNA polymerase II largest subunit [Buxus sempervirens]
Length = 240
Score = 93.6 bits (231), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|406865480|gb|EKD18522.1| DNA-directed RNA polymerase 2 largest subunit [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 1738
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL++ +IV GED+LS +A NATLL + VRS L K VA RL+ AF ++GE
Sbjct: 1004 AVRQLLDRMIIVRGEDELSVEAQTNATLLIKAQVRSRLAYKRVALQMRLNKLAFAHVLGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRF +A PGEMVG LAAQS+G
Sbjct: 1064 IENRFMRALVNPGEMVGVLAAQSIG 1088
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces stegomyiae]
Length = 1014
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR L +K ++ G+D++S +A +NATLL Q L+RSTL T+ V E + L S AF++++GEI
Sbjct: 927 VRGLCDKLTVIRGDDKISLEAQKNATLLTQILIRSTLATRRVIEEFHLDSRAFDYIIGEI 986
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RF Q+ +PGEMVG +AAQS+G
Sbjct: 987 TFRFSQSFVSPGEMVGIIAAQSIG 1010
>gi|80973290|gb|ABB53386.1| RNA polymerase II largest subunit [Berberidopsis beckleri]
Length = 240
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL+ V++ G D LS++A ++ T LF+C +RS L KL+ + R+S EA ++++GE+
Sbjct: 1142 VRKLLDSLVVIRGNDPLSREAQDSVTHLFKCHLRSRLAFKLLVQQERMSREALDYVLGEL 1201
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1202 EDRFLKAAVAPGEMVGVLAAQSIG 1225
>gi|80973288|gb|ABB53385.1| RNA polymerase II largest subunit [Aextoxicon punctatum]
Length = 240
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 28 ELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIEN 87
ELL++ V+V G+D+LSK+A N+T+ F L+++ L TK + E Y L+ AF+WL+GEIE
Sbjct: 733 ELLKRLVVVRGDDKLSKEAQINSTINFFALIKTCLSTKRILEYYHLNKAAFDWLIGEIEV 792
Query: 88 RFQQAQCAPGEMVGALAAQSL 108
RF QA PGEMVG +AAQS+
Sbjct: 793 RFNQALVQPGEMVGTIAAQSI 813
>gi|45935333|gb|AAS79688.1| RNA polymerase II large subunit [Ephedra viridis]
Length = 1013
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/83 (49%), Positives = 60/83 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ +L E+ +V G+D LS +A +NATL F L+RS +K V + Y L+ EAF+W++GE+
Sbjct: 931 IDKLQERLKVVPGDDPLSFEAQKNATLFFNILLRSVFASKRVLKEYHLTREAFDWVIGEV 990
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
ENRF Q+ APGEM+G +AAQS+
Sbjct: 991 ENRFLQSLVAPGEMIGCVAAQSI 1013
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L + V+V G+D LSK+A ENA+L F+ VR+T ++ V E + L+ EAFEW++GE+
Sbjct: 1003 LQQLSNRLVVVRGDDSLSKEAQENASLTFRMHVRATFASRRVLEQFHLNREAFEWVLGEV 1062
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1063 EAKFNQSLVNPGEMCGTLAAQSIG 1086
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L + V+V G+D LSK+A ENA+L F+ VR+T ++ V E + L+ EAFEW++GE+
Sbjct: 1000 LQQLSNRLVVVRGDDSLSKEAQENASLTFRMHVRATFASRRVLEQFHLNREAFEWVLGEV 1059
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1060 EAKFNQSLVNPGEMCGTLAAQSIG 1083
>gi|80973326|gb|ABB53404.1| RNA polymerase II largest subunit [Nelumbo nucifera]
Length = 240
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|58395899|gb|AAW72754.1| RNA polymerase II largest subunit [Grifola sordulenta]
Length = 259
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 58/83 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL + V+V GE LS++ ENATLLF+ +R+T + V E Y L+ EAFEW++GEI
Sbjct: 177 VRELCSRLVVVRGESPLSQEGQENATLLFRMHIRATFAGRRVLERYHLNREAFEWVLGEI 236
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E +F Q+ PGEM G LAAQS+
Sbjct: 237 EAKFNQSLAHPGEMCGTLAAQSI 259
>gi|110669635|gb|ABG81912.1| RNA polymerase II largest subunit [Pertusaria dactylina]
Length = 1015
Score = 92.8 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/84 (55%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELL++ V+V GED LSK+ NATLLF+ +RS L K V Y L+ AF+ ++GEI
Sbjct: 925 VRELLDRLVVVRGEDALSKEGQHNATLLFKAHLRSRLAFKRVVMEYSLNKLAFQNVLGEI 984
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 985 ESRFCRAAVNPGEMVGVLAAQSIG 1008
>gi|80973292|gb|ABB53387.1| RNA polymerase II largest subunit [Berberidopsis beckleri]
Length = 240
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLRSTFSSKRVLKEYRLTREAFDWIIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973328|gb|ABB53405.1| RNA polymerase II largest subunit [Nepenthes ampullaria]
Length = 240
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 60/81 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RSTL +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLRSTLASKRVLQEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973286|gb|ABB53384.1| RNA polymerase II largest subunit [Acer palmatum]
Length = 240
Score = 92.8 bits (229), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D LS +A +NATL F L+RST +K V + +RL+ EAFEWL+GE
Sbjct: 160 AIDKLQERLKVVPGDDALSVEAQKNATLFFNILLRSTFASKRVLQEHRLTREAFEWLIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|110669652|gb|ABG81920.1| RNA polymerase II largest subunit, partial [Pleopsidium chlorophanum]
Length = 1011
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL++ V+V G+D+LSK+ +NATLLF+ +RS L K V Y L+ AF+ ++GE
Sbjct: 920 AVRDLLDRLVVVRGDDKLSKEGQDNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGE 979
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 980 IESRFCRAAVDPGEMVGVLAAQSIG 1004
>gi|329132887|gb|AEB78334.1| RNA polymerase II largest subunit [Percolomonas cosmopolitus]
Length = 1028
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL +K V+++G+D L+++A +NAT+L L+R L +K+V ++L++ FEW++GEI
Sbjct: 925 VEELSKKLVVISGDDYLAREAQQNATILVNILIRFNLASKVVITKHKLNANGFEWILGEI 984
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E F++A PGEMVGALAAQS+G
Sbjct: 985 ETTFKRAFVQPGEMVGALAAQSIG 1008
>gi|80973294|gb|ABB53388.1| RNA polymerase II largest subunit [Berberidopsis corallina]
Length = 240
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDLLSTEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ + V G+D LSK+ NA+L F+ VR+TL T+ V E Y L+ EAFEW++GE
Sbjct: 906 AVHQLTERLLSVCGDDPLSKEVQANASLTFRMHVRATLATRRVLELYHLNREAFEWVLGE 965
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEM G LAAQS+G
Sbjct: 966 IEAKFNQSLVNPGEMCGTLAAQSIG 990
>gi|80973344|gb|ABB53413.1| RNA polymerase II largest subunit [Vitis piasezkii]
Length = 240
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973342|gb|ABB53412.1| RNA polymerase II largest subunit [Tetracentron sinense]
Length = 240
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 43/74 (58%), Positives = 57/74 (77%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ V+V G+D+LS +A NATLLFQ L+RSTL T+ V E+Y LS++AF+WL+GEI
Sbjct: 912 VKALLDNLVVVRGKDELSLEAQYNATLLFQILLRSTLATRRVIEDYHLSTQAFDWLLGEI 971
Query: 86 ENRFQQAQCAPGEM 99
+ RF QA PGEM
Sbjct: 972 DARFNQAIVHPGEM 985
>gi|110669656|gb|ABG81922.1| RNA polymerase II largest subunit, partial [Acarospora laqueata]
Length = 1016
Score = 92.4 bits (228), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL++ V+V G+D+LS +A ENAT+LF+ +RS L K + Y L+ AF+ ++GE
Sbjct: 925 AVRDLLDRLVVVRGDDKLSIEAQENATMLFKAHLRSRLAFKRIVTEYSLNKLAFQHVLGE 984
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 985 IESRFARAAVNPGEMVGVLAAQSIG 1009
>gi|418204396|gb|AFX61752.1| RNA polymerase I largest subunit, partial [Ascosphaera aggregata]
Length = 1697
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELL++ VIV G+D +S++A ENATLLF C +RS L + + Y L+ A + ++G I
Sbjct: 995 VRELLDRLVIVRGDDIISREAQENATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAI 1054
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A PGEMVG LAAQS+G
Sbjct: 1055 ENRFARAVANPGEMVGVLAAQSIG 1078
>gi|80973346|gb|ABB53414.1| RNA polymerase II largest subunit [Vitis piasezkii]
Length = 240
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 59/80 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +L E+ +V G+D +S +A +NATLLF L+RST +K V YRLS EAF+W++GEI
Sbjct: 161 VDKLQERLKVVPGDDLISMEAQKNATLLFNILLRSTFASKRVLNEYRLSREAFDWVIGEI 220
Query: 86 ENRFQQAQCAPGEMVGALAA 105
E+RF Q+ +PGEM+G +AA
Sbjct: 221 ESRFLQSLVSPGEMIGCIAA 240
>gi|80973322|gb|ABB53402.1| RNA polymerase II largest subunit [Platanus orientalis]
Length = 240
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V L E+ +V G+D LS +A +NATL F L RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDXLQERLXVVPGDDFLSMEAQKNATLFFNILXRSTFXSKRVXKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973304|gb|ABB53393.1| RNA polymerase II largest subunit [Gunnera chilensis]
Length = 240
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDLMSMEAQKNATLFFNILLRSTFASKRVLNEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|80973298|gb|ABB53390.1| RNA polymerase II largest subunit [Cissus tuberosa]
Length = 240
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D +S +A +NATL F L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDLISVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|418204404|gb|AFX61756.1| RNA polymerase I largest subunit, partial [Ascosphaera variegata]
Length = 1683
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELL++ VIV G+D +S++A E+ATLLF C +RS L + + Y L+ A + ++G I
Sbjct: 990 VRELLDRLVIVRGDDSISREAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAI 1049
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1050 ENRFARAIASPGEMVGVLAAQSIG 1073
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/87 (49%), Positives = 58/87 (66%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ L +K ++V G+D +S A E+ TL F C +RS L T + +RL+ EAFEW++GEI
Sbjct: 1023 INALTKKLIVVPGDDPISVAAQESTTLQFCCHLRSMLATNRLIHEHRLTREAFEWVLGEI 1082
Query: 86 ENRFQQAQCAPGEMVGALAAQSLGTST 112
E+RF Q+Q P EMVG LAAQ LG T
Sbjct: 1083 EHRFAQSQAQPAEMVGPLAAQCLGEPT 1109
>gi|219127092|ref|XP_002183777.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405014|gb|EEC44959.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1706
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V LLE+ ++V G D LS +A NAT L++ L+R+ L +K V +++RLS A W+VGEI
Sbjct: 947 VNNLLERLIVVVGNDPLSVEAQSNATTLYRILIRTMLSSKRVLKDWRLSKAALNWVVGEI 1006
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF A PGEM G LAAQS+G
Sbjct: 1007 ETRFNIAMVNPGEMAGVLAAQSIG 1030
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/87 (51%), Positives = 59/87 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL E+ V+V G D LS +A NAT++F LVR L +K V Y+L+++A +WL+GE+
Sbjct: 1006 VRELCERLVVVIGSDGLSVEAQRNATIMFHSLVRMHLASKRVMSEYKLNNKALDWLLGEL 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLGTST 112
E RF AQ GE VG +AAQSLG T
Sbjct: 1066 ETRFFLAQAHAGECVGTVAAQSLGEPT 1092
>gi|238601759|ref|XP_002395497.1| hypothetical protein MPER_04443 [Moniliophthora perniciosa FA553]
gi|215466334|gb|EEB96427.1| hypothetical protein MPER_04443 [Moniliophthora perniciosa FA553]
Length = 343
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ L E+ ++V G D LS++A +NATL F+ +R+T ++ V E + L+ EAFEW++GE
Sbjct: 197 AVKALCERLIVVRGNDDLSREAQDNATLRFRMHLRATFASRRVLEKFHLNREAFEWVLGE 256
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E++F Q+ PGEM G LAAQS+G
Sbjct: 257 VESKFNQSLVNPGEMCGTLAAQSIG 281
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ +L+++ V+V G D LS +A NA +L + +RSTL +K V E + L S AF+W+VGEI
Sbjct: 938 INQLIDRLVVVRGSDPLSIEAQNNAVMLLKIHLRSTLSSKRVIEEFHLDSNAFDWVVGEI 997
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF++ PGEMVG LAAQS+G
Sbjct: 998 ETRFKRTLVNPGEMVGTLAAQSIG 1021
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 92.0 bits (227), Expect = 4e-17, Method: Composition-based stats.
Identities = 45/85 (52%), Positives = 57/85 (67%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+R+L EK VIV G D L+ +A NA LLF+ L+R + TK V + LS EAF+W+VGE
Sbjct: 1025 AIRDLSEKLVIVRGSDNLTLEAQNNAVLLFRILLRCEMATKRVLHEHHLSREAFDWVVGE 1084
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RF + PGEM G LAAQS+G
Sbjct: 1085 IEARFNASVVHPGEMCGTLAAQSIG 1109
>gi|33326209|gb|AAQ08514.1| RNA polymerase II largest subunit [Welwitschia mirabilis]
Length = 1013
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G D LS +A +NATL F L+RST +K V + Y L+ EAF+W++GE
Sbjct: 930 AIDKLQERLKVVPGNDPLSIEAQKNATLFFNILLRSTFASKRVLKEYHLTKEAFDWVIGE 989
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE RF Q+ +PGEM+G +AAQS+
Sbjct: 990 IETRFLQSLVSPGEMIGCVAAQSI 1013
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV EL + V+V G+D LS++A NATL F+ +R+T ++ V E + L+ EAF+W++GE
Sbjct: 996 GVNELCGRLVVVRGDDPLSREAQLNATLTFRMHLRATFASRRVLEKFHLTREAFDWVMGE 1055
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E +F Q+ PGEM G LAAQS+G
Sbjct: 1056 VETKFNQSVVHPGEMCGTLAAQSIG 1080
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 91.7 bits (226), Expect = 5e-17, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+L +K +++ G D++S +A NATLL Q LVRSTL TK V E +RL AF++++GEI
Sbjct: 921 VRKLCDKLMVIPGTDKISVEAQRNATLLSQILVRSTLATKRVIEEFRLDKRAFDYVLGEI 980
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RF Q+ GEMVG +AAQS+G
Sbjct: 981 ATRFAQSLVHAGEMVGIIAAQSIG 1004
>gi|34597106|gb|AAQ77128.1| RNA polymerase II largest subunit [Strigamia bothriopa]
Length = 91
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/72 (61%), Positives = 48/72 (66%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ L K +V G+D LS ANENA LF CL RSTLCTK V +RLS EAFEWL GE
Sbjct: 20 GVKXLXSKLXVVPGBDYLSXTANENAXXLFXCLXRSTLCTKRVXXEFRLSXEAFEWLXGE 79
Query: 85 IENRFQQAQCAP 96
IE RF AQ P
Sbjct: 80 IETRFXHAQVQP 91
>gi|80973324|gb|ABB53403.1| RNA polymerase II largest subunit [Platanus orientalis]
Length = 240
Score = 91.7 bits (226), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V L E+ +V G+D LS +A +NATL F L RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDNLQERLRVVPGDDFLSMEAQKNATLFFNILPRSTFSSKRVMKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|418204400|gb|AFX61754.1| RNA polymerase I largest subunit, partial [Ascosphaera larvis]
Length = 1627
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELL++ V+V G+D +S++A E+ATLLF C +RS L + + Y L+ A + ++G I
Sbjct: 990 VRELLDRLVVVRGDDSISREAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAI 1049
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1050 ENRFARAIASPGEMVGVLAAQSIG 1073
>gi|418204398|gb|AFX61753.1| RNA polymerase I largest subunit, partial [Ascosphaera cf. larvis
64254]
Length = 1616
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELL++ V+V G+D +S++A E+ATLLF C +RS L + + Y L+ A + ++G I
Sbjct: 990 VRELLDRLVVVRGDDSISREAQESATLLFMCQLRSRLAFRRLVVEYSLNKLALQHVLGAI 1049
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1050 ENRFARAIASPGEMVGVLAAQSIG 1073
>gi|80973338|gb|ABB53410.1| RNA polymerase II largest subunit [Sedum burrito]
Length = 240
Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G D LS +A +NATLLF L+RST +K V YRL+ EAFEW+VGE
Sbjct: 160 AIDKLQERLKVVPGADSLSIEAQKNATLLFNILLRSTFASKRVLSEYRLTREAFEWVVGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +A
Sbjct: 220 IESRFLQSLVAPGEMIGCVAT 240
>gi|223992753|ref|XP_002286060.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220977375|gb|EED95701.1| DNA directed RNA polymerase II, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1627
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+ +L + V+V G+D LS +A NAT L++ L+RS L +K V YRLS A W++GEI
Sbjct: 1009 IEAMLRRLVVVVGDDLLSVEAQNNATTLYRILIRSYLASKRVLREYRLSEAALIWVLGEI 1068
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF A+ +PGEM G LAAQS+G
Sbjct: 1069 EARFHHAKVSPGEMAGVLAAQSIG 1092
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G++ +L ++V G+D++S+ ENATLLF+ +RS LC+K V E + L+ EA+EW++GE
Sbjct: 794 GLKRVLNNLLVVRGDDKISRVMQENATLLFKIHLRSFLCSKQVIEVHHLTREAWEWVLGE 853
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEM G LAAQS+G
Sbjct: 854 IEGQFARSVAQPGEMCGTLAAQSIG 878
>gi|83320450|gb|ABC02852.1| RNA polymerase II largest subunit, partial [Rhizophlyctis rosea]
Length = 1006
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 49/115 (42%), Positives = 74/115 (64%), Gaps = 9/115 (7%)
Query: 1 MVKSVRNSPAQYSGSARRIIGLNIG-------VRELLEKCVIVAGEDQLSKQANENATLL 53
+++ ++N+ Q+S S ++ L++G VR+L V+V G D LSK+A NAT L
Sbjct: 894 IMRWIKNAQHQFSISRSQL--LDMGPDYVFNKVRDLCGDLVVVRGRDNLSKEAQANATQL 951
Query: 54 FQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSL 108
+Q L+RS L ++ V E +RL+ AF+W++ I+ RF QA PGEMVG LAAQS+
Sbjct: 952 YQILIRSILASRRVLEEFRLNRAAFDWVLETIKARFDQAIINPGEMVGTLAAQSI 1006
>gi|188532153|gb|ACD63088.1| RNA polymerase II largest subunit [Papaver orientale]
Length = 1010
Score = 91.3 bits (225), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 61/84 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F L+RST +K V + + L+ EAF+W++GE
Sbjct: 927 AIDKLQERLKVVPGDDSMSMEAQKNATLFFNILLRSTFASKRVLKEHHLTREAFDWVIGE 986
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
+E+RF Q+ APGEM+G +AAQS+
Sbjct: 987 VESRFLQSLVAPGEMIGCVAAQSI 1010
>gi|408691100|gb|AFU81922.1| RNA polymerase II subunit 1, partial [Fusarium avenaceum]
Length = 328
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 244 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 303
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 304 LQNRWDRAFVNPGEMVGVLAAQSIG 328
>gi|157841374|gb|ABV83141.1| RNA polymerase 2 [Choriorhabditis cristata]
Length = 270
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 57/68 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +IV+GED++SKQA NATLL L+RSTLC+K +A +++L++EAFEWL+GE
Sbjct: 202 GVKELSKKLIIVSGEDRISKQAQYNATLLMNILIRSTLCSKKMATSHKLNAEAFEWLLGE 261
Query: 85 IENRFQQA 92
+ RFQQA
Sbjct: 262 VXXRFQQA 269
>gi|157841416|gb|ABV83166.1| RNA polymerase 2 [Cruznema tripartitum]
Length = 276
Score = 91.3 bits (225), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K VIV GED++SKQA NATLL L+RSTLC+K +A +Y+L+ EAF+WL+GE
Sbjct: 210 GVRELSKKLVIVGGEDRISKQAQYNATLLMNILLRSTLCSKQMASHYKLNQEAFDWLLGE 269
Query: 85 IENRFQQ 91
+ RFQQ
Sbjct: 270 VXXRFQQ 276
>gi|80973340|gb|ABB53411.1| RNA polymerase II largest subunit [Senecio picticaulis]
Length = 240
Score = 90.9 bits (224), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V YRL+ EAF+W++GE
Sbjct: 160 AVDKLQERLRVVPGDDLLSIEAQKNATLFFNILLRSTFASKRVLSEYRLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 90.9 bits (224), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V++L + V+V G+D LSK+ NA+L F+ +R+TL ++ V E + L+ EAFEW++GE
Sbjct: 908 AVQQLTSRLVVVLGDDHLSKETQANASLTFRMHIRATLASRCVLERFHLNREAFEWVLGE 967
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE +F Q+ PGEM G LAAQS+
Sbjct: 968 IETKFNQSLVNPGEMCGTLAAQSI 991
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 90.9 bits (224), Expect = 9e-17, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L EK ++V G+ + K+A +NA LF CL+RS L T+ V E YRL+ + F+W++
Sbjct: 989 GVRKLQEKLLVVRGKSDILKEAQQNAITLFCCLLRSRLATRRVIEEYRLNRQTFDWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEAQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL++ V+V G+D LSK+ NATLLF+ L+RS L K + Y L+ AF+ ++GEI
Sbjct: 906 VNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLRSRLAFKRLVMEYSLNKLAFQHVLGEI 965
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 966 ESRFSRAAVNPGEMVGVLAAQSIG 989
>gi|113707382|gb|ABI36590.1| RNA polymerase II largest subunit [Teloschistes exilis]
Length = 1003
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL++ V+V G+D LSK+ NATLLF+ L+RS L K + Y L+ AF+ ++GEI
Sbjct: 913 VNQLLDRLVVVRGDDPLSKEGQHNATLLFKALLRSRLAFKRLVMEYSLNKLAFQHVLGEI 972
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 973 ESRFSRAAVNPGEMVGVLAAQSIG 996
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V LLE+ V+V G+ LSK+ NATLLF+ L+RS L K + Y L+ AF+ +VGEI
Sbjct: 930 VNRLLERLVVVRGDHSLSKEGQHNATLLFKALLRSRLAFKRLVXEYSLNKLAFQHVVGEI 989
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 990 ESRFSRAAVNPGEMVGVLAAQSIG 1013
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 90.9 bits (224), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 58/84 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V L + VIV G D ++++A ENATLLF LVRS L K V Y+L+ +FEW++GE
Sbjct: 959 AVESLTRRLVIVPGTDFIAQEAQENATLLFGILVRSELAAKRVLTEYKLNKRSFEWVLGE 1018
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF+ + A GEMVG +AAQS+
Sbjct: 1019 IEHRFKAGRAAAGEMVGPIAAQSI 1042
>gi|80973318|gb|ABB53400.1| RNA polymerase II largest subunit [Macadamia integrifolia]
Length = 240
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL L+RST +K V + YRL+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSMEAQKNATLFLNILLRSTFASKRVLKEYRLTREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|119643502|gb|ABL85573.1| RNA polymerase II largest subunit [Lecidea fuscoatra]
Length = 1016
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRELLE+ V+V G+D+LS +A NATLLF+ +RS L K + + L+ AF+ ++GEI
Sbjct: 926 VRELLERLVVVRGDDELSIEAQHNATLLFKAQLRSRLAFKRLVKENSLNKLAFQHIIGEI 985
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 986 ESRFCRAAVNPGEMVGVLAAQSIG 1009
>gi|408690980|gb|AFU81862.1| RNA polymerase II subunit 1, partial [Fusicolla sp. NRRL 22136]
Length = 532
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 42/86 (48%), Positives = 65/86 (75%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV+ L+EK ++V G D +S +A+ NAT+LF+ LVRS L K V + +RL+ AF ++G
Sbjct: 447 LGVQGLIEKILVVKGTDSISLEADSNATILFKALVRSRLAFKEVVKEHRLNKLAFNHIIG 506
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E++N++++A +PGEMVG LAAQS+G
Sbjct: 507 ELQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita phalloides]
Length = 1007
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VRE ++ ++V G+D LS +A EN++L+F+ +R+T ++ V E + L+ EAF+W++GE
Sbjct: 919 AVREQCKRLIVVRGDDPLSLEAQENSSLMFRMHLRATFASRRVLERFHLTREAFDWVLGE 978
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E++F Q+ PGEM G LAAQS+G
Sbjct: 979 VESKFNQSLVHPGEMCGTLAAQSIG 1003
>gi|83320458|gb|ABC02856.1| RNA polymerase II largest subunit, partial [Endogone pisiformis]
Length = 845
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 62/84 (73%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L E+ ++V G D++S +A NATLL+Q L+RST TK V E + L+S AF +++GE
Sbjct: 762 GVRKLSEELLVVRGSDKISVEAQRNATLLYQILLRSTFSTKRVLEEFHLNSAAFTYVLGE 821
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
I++RF + APG MVG +AAQS+
Sbjct: 822 IKSRFLTSVVAPGGMVGTIAAQSI 845
>gi|367052355|ref|XP_003656556.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
gi|347003821|gb|AEO70220.1| hypothetical protein THITE_2121340 [Thielavia terrestris NRRL 8126]
Length = 1751
Score = 90.5 bits (223), Expect = 1e-16, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR LL++ V+V G D +SK+A+ NATLLF+ +RS L K +A R++ AFE ++GE
Sbjct: 1002 AVRALLDRLVVVRGTDAISKEADYNATLLFKIQLRSRLAFKRLAVEQRINKLAFEHILGE 1061
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ENR+ ++ APGEMVG LAAQS+G
Sbjct: 1062 LENRWSRSMVAPGEMVGVLAAQSIG 1086
>gi|80973320|gb|ABB53401.1| RNA polymerase II largest subunit [Macadamia integrifolia]
Length = 240
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATLLF L+RST +K V + Y L+ EAF+W++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSTEAQKNATLLFNILLRSTFASKRVLKEYGLTREAFDWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL EK +++ G+ ++ ++A +NA LF CL+RS L T+ V + YRL+ + FEW++
Sbjct: 989 GVKELQEKLLVLRGKSKILQEAQQNAVTLFCCLLRSRLATRRVIQEYRLNKQTFEWVLSN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E++F ++ PGEMVG LAAQS+G
Sbjct: 1049 VESQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus heterostrophus
C5]
Length = 1737
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE L++ V++ G D+LS++A ++AT LF+ +R+ L K +A +RL+ EA +++GE+
Sbjct: 1005 VRETLDRLVVIRGTDELSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGEL 1064
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1065 EDRFLKAAVAPGEMVGVLAAQSIG 1088
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus ND90Pr]
Length = 1737
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE L++ V++ G D+LS++A ++AT LF+ +R+ L K +A +RL+ EA +++GE+
Sbjct: 1005 VRETLDRLVVIRGTDELSREAQDSATYLFKAHLRARLAFKKLAVEHRLNKEALSYVLGEL 1064
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1065 EDRFLKAAVAPGEMVGVLAAQSIG 1088
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL E+ ++V G ++ K+A E+A LF CL+RS L ++ V + YRL+ +AFEW++
Sbjct: 989 GVKELQERLLVVRGNSRIIKEAQEDAITLFCCLMRSRLASRRVIQEYRLTKQAFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEVQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V EL + +V G D ++++A EN+TLLF +RSTL +K V ++L+SE+F WL+GE
Sbjct: 931 AVEELAGRLTVVPGTDPIAREAQENSTLLFLIQLRSTLASKRVIHEFKLTSESFPWLLGE 990
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
I+ RF+Q PGEMVG +AAQS+
Sbjct: 991 IQARFKQGLAHPGEMVGPIAAQSI 1014
>gi|255079898|ref|XP_002503529.1| predicted protein [Micromonas sp. RCC299]
gi|226518796|gb|ACO64787.1| predicted protein [Micromonas sp. RCC299]
Length = 1720
Score = 90.1 bits (222), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ +L V+V G D LS +A NAT+LF LVRSTL K V +RLS AF W++GE+
Sbjct: 992 VKSMLNGLVVVPGRDALSVEAQRNATILFFALVRSTLSAKRVMSEFRLSPAAFNWVIGEV 1051
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+ A PG+ +G +AAQS+G
Sbjct: 1052 ESRFKVALAPPGDGIGTVAAQSIG 1075
>gi|340924320|gb|EGS19223.1| hypothetical protein CTHT_0058480 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1756
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR LLE+ V+V G+D +SK+A+ N+T+LF+ L+RS L K +A R++ AFE ++GE
Sbjct: 1008 AVRALLERMVVVRGDDPISKEADYNSTILFKILLRSRLAFKRLACEQRINKLAFEHILGE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ENR+ ++ PGEMVG LAAQS+G
Sbjct: 1068 LENRWARSMVNPGEMVGVLAAQSIG 1092
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL ++ V+V G+ +++A +NA L+F+ +R+T + V E Y L+ EAFEW++GEI
Sbjct: 855 VRELGKRLVVVRGDTLFTREAQDNAALMFRMHLRATFAARRVLEKYHLNREAFEWVLGEI 914
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 915 EAKFNQSLAHPGEMCGTLAAQSIG 938
>gi|194369484|gb|ACF58233.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
LSKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 LSKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/84 (42%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L ++ ++V G+D L+++A ENA+L F+ +R+T + V E + L+ EAF+W++GE+
Sbjct: 1036 IQQLADRLIVVRGDDHLTREAAENASLAFKMHLRATFAARPVLEEFHLNREAFDWVLGEV 1095
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F Q+ PGEM G LAAQS+G
Sbjct: 1096 ETKFNQSMAHPGEMCGTLAAQSIG 1119
>gi|408691038|gb|AFU81891.1| RNA polymerase II subunit 1, partial [Nectria ventricosa]
Length = 535
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/86 (51%), Positives = 63/86 (73%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV+ELL K IV G D +S +A+ NAT+LF+ LVRS L K + + +RL+ AF+ ++G
Sbjct: 450 VGVQELLRKIQIVRGTDPISLEADANATILFKGLVRSRLAFKEIVKGHRLNKLAFDHVIG 509
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E++NR+ +A PGEMVG LAAQS+G
Sbjct: 510 ELQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|303272485|ref|XP_003055604.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463578|gb|EEH60856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1694
Score = 89.7 bits (221), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR +L +V G D+LS +A N+T+LF LVRSTL K V ++++LS AF W+VGE+
Sbjct: 994 VRSMLNGLTVVPGGDELSLEAQRNSTILFFALVRSTLSAKRVMKDFKLSPAAFNWVVGEV 1053
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+ A PG+ +G +AAQS+G
Sbjct: 1054 ESRFKMALAPPGDGIGTVAAQSIG 1077
>gi|340517293|gb|EGR47538.1| predicted protein [Trichoderma reesei QM6a]
Length = 1755
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR ++ K IV GEDQ+SK+A+ +AT+LF+ L+RS L K V + +RL+ AFE ++GE+
Sbjct: 1004 VRNVINKLKIVRGEDQISKEADTSATILFKALLRSRLAFKEVVKEHRLNKLAFEHVLGEL 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ PGEMVG LAAQS+G
Sbjct: 1064 QNRWDRSFVNPGEMVGVLAAQSIG 1087
>gi|422727796|gb|AFX61755.2| RNA polymerase I largest subunit, partial [Ascosphaera torchioi]
Length = 1651
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ V+V G+D +SK+A E+AT+LF+C +RS L + + Y L+ AF+ ++G I
Sbjct: 923 VRDLLDRLVVVRGDDIISKEAQESATILFRCHLRSRLAFRRLVVEYSLNKLAFQHVLGAI 982
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
EN+F +A PGEMVG LAAQS+G
Sbjct: 983 ENKFARAVANPGEMVGVLAAQSIG 1006
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 56/85 (65%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR L+E+ V+V G+D + A ENAT+LF +R + V E + L+ EAFEW++GE
Sbjct: 1003 AVRGLVERLVVVRGDDSWAHAAQENATMLFGIHLRGMFACRRVLERFHLNKEAFEWVLGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F Q+ PGEM G LAAQS+G
Sbjct: 1063 IETKFNQSVAHPGEMCGTLAAQSIG 1087
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase [Stereum
hirsutum FP-91666 SS1]
Length = 1703
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+L + VIV G+D LS++A +NATL F+ +R+T + V E + L+ EAF+W++GE
Sbjct: 1003 AVRDLANRLVIVRGDDSLSREAQDNATLNFRMHLRATFACRRVLERHHLTREAFDWVLGE 1062
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E +F + PGEM G LAAQS+G
Sbjct: 1063 VETKFNMSVVNPGEMCGTLAAQSIG 1087
>gi|367018612|ref|XP_003658591.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
gi|347005858|gb|AEO53346.1| hypothetical protein MYCTH_2294525 [Myceliophthora thermophila ATCC
42464]
Length = 1754
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR LL++ V+V G+D +SK+A+ N+TLLF+ +RS L K +A R++ AFE ++GE
Sbjct: 1007 AVRALLDRMVVVRGDDIISKEADYNSTLLFKIQLRSRLAYKRLAVEQRINKLAFEHILGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ENR+ ++ APGEMVG LAAQS+G
Sbjct: 1067 LENRWARSMVAPGEMVGVLAAQSIG 1091
>gi|21280519|gb|AAM45152.1|AF395111_1 RNA polymerase II largest subunit [Ochromonas danica]
Length = 1064
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 43/79 (54%), Positives = 55/79 (69%)
Query: 31 EKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ 90
E +IV G D +S++A NATLLFQ LVRS L TK V +YRL+ +A EW+VG I + F+
Sbjct: 979 EDLLIVRGSDPISREAQSNATLLFQILVRSKLATKRVLRDYRLTKDALEWVVGAIVSDFR 1038
Query: 91 QAQCAPGEMVGALAAQSLG 109
+ PGEM G LAAQS+G
Sbjct: 1039 ASVVHPGEMAGVLAAQSIG 1057
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L E+ +++ G+ Q+ ++A ENA LF CL+RS L T+ V YRL+ + FEW++
Sbjct: 989 GVRGLQERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEAQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 89.4 bits (220), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L E+ +++ G+ Q+ ++A ENA LF CL+RS L T+ V YRL+ + FEW++
Sbjct: 989 GVRGLQERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEAQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|262303457|gb|ACY44321.1| RNA polymerase largest subunit [Peripatoides novaezealandiae]
Length = 348
Score = 89.4 bits (220), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 53/65 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L +K +IV GED+LS+QA ENATL LVR+TLC+K V + ++LS+EAFEWL+GE
Sbjct: 137 GVRDLSKKLIIVPGEDRLSRQAQENATLCXNILVRATLCSKXVTKEHKLSTEAFEWLLGE 196
Query: 85 IENRF 89
IE RF
Sbjct: 197 IETRF 201
>gi|110669641|gb|ABG81915.1| RNA polymerase II largest subunit [Umbilicaria mammulata]
Length = 1014
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ V+V G+D LSK+ NATLLF+ +RS L K V Y L+ AF+ ++GEI
Sbjct: 924 VKDLLDRLVVVRGDDVLSKEGQHNATLLFKAHLRSRLAFKRVVTEYSLNKLAFQHVLGEI 983
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 984 ESRFCRATVNPGEMVGVLAAQSIG 1007
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/81 (50%), Positives = 58/81 (71%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L E+ ++V G+D+LS+ A +NATL+F L+RS L T+ V E Y L+ EAF+W++GE+E
Sbjct: 1009 LAERLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQI 1068
Query: 89 FQQAQCAPGEMVGALAAQSLG 109
F +A EMVG LAAQS+G
Sbjct: 1069 FNKAVVNAAEMVGTLAAQSIG 1089
>gi|80973334|gb|ABB53408.1| RNA polymerase II largest subunit [Ruschia herrei]
Length = 240
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 59/81 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ +V G+D LS +A +NATL F L+RST +K V + ++L+ EAFEW++GE
Sbjct: 160 AVDKLQERLKVVPGDDFLSIEAQKNATLFFNILLRSTFASKRVLKEFKLNREAFEWVIGE 219
Query: 85 IENRFQQAQCAPGEMVGALAA 105
IE+RF Q+ APGEM+G +AA
Sbjct: 220 IESRFLQSLVAPGEMIGCVAA 240
>gi|194369468|gb|ACF58225.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
Length = 219
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIAQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|113707388|gb|ABI36593.1| RNA polymerase II largest subunit [Ramalina complanata]
Length = 1015
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +LL + V+V GED LSK+ NATLLF +RS L K + Y L+ AF+ ++GE
Sbjct: 924 AVEKLLSRLVVVRGEDALSKEGQHNATLLFSAQLRSRLAFKRLVTQYNLNKLAFQHVLGE 983
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A +PGEMVG LAAQS+G
Sbjct: 984 IESRFNRAIVSPGEMVGVLAAQSIG 1008
>gi|57472114|gb|AAW51135.1| RNA polymerase II largest subunit [Calostoma cinnabarinum]
Length = 994
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L ++ + + G+D+LS++A NA+L F+ VR+TL T+ V E + L+ EAFEW++GE
Sbjct: 911 AVHQLTQRLLAILGDDELSREAQANASLTFRMHVRATLATRRVLEEFHLNREAFEWVLGE 970
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE +F Q+ PGEM G L+AQS+
Sbjct: 971 IEAKFNQSLVNPGEMCGTLSAQSI 994
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V ELL+K VIV G+D+LS++ NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 926 VNELLDKLVIVRGDDELSREGQHNATLLFKAQLRSRLAFKRLVMEN-SLNKLAFQHVIGE 984
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 985 IESRFSRAAVNPGEMVGVLAAQSIG 1009
>gi|194369478|gb|ACF58230.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|452819030|gb|EME26138.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 1275
Score = 89.0 bits (219), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 39 EDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGE 98
ED +S + NATLLFQ +R+TL TK + +RL SEAF WL+GEIE+RF +AQ +PGE
Sbjct: 517 EDSISTELQLNATLLFQIHIRATLATKRIIAFHRLHSEAFSWLLGEIESRFLRAQVSPGE 576
Query: 99 MVGALAAQSLGTST 112
GA+AAQS+G T
Sbjct: 577 XXGAIAAQSIGEPT 590
>gi|194369424|gb|ACF58203.1| RNA polymerase II large subunit, partial [Meloidogyne arenaria]
gi|194369426|gb|ACF58204.1| RNA polymerase II large subunit, partial [Meloidogyne arenaria]
gi|194369438|gb|ACF58210.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
gi|194369440|gb|ACF58211.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
gi|194369446|gb|ACF58214.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
gi|194369448|gb|ACF58215.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
gi|194369450|gb|ACF58216.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
gi|194369452|gb|ACF58217.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
gi|194369454|gb|ACF58218.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
gi|194369458|gb|ACF58220.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
gi|194369460|gb|ACF58221.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
gi|194369464|gb|ACF58223.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
gi|194369466|gb|ACF58224.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
gi|194369470|gb|ACF58226.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
gi|194369480|gb|ACF58231.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369474|gb|ACF58228.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369472|gb|ACF58227.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369462|gb|ACF58222.1| RNA polymerase II large subunit, partial [Meloidogyne mayaguensis]
Length = 219
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|171695074|ref|XP_001912461.1| hypothetical protein [Podospora anserina S mat+]
gi|170947779|emb|CAP59942.1| unnamed protein product [Podospora anserina S mat+]
Length = 1748
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL + V+V GED+LS++A+ NAT+LF+ +RS L K +A RL+ AF+ ++GE
Sbjct: 1005 AVQALLARMVVVRGEDELSREADYNATILFKIQIRSRLAFKRLAVEQRLNKLAFDHVLGE 1064
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ENR+ ++ +PGEMVG LAAQS+G
Sbjct: 1065 LENRWSRSMVSPGEMVGVLAAQSIG 1089
>gi|194369482|gb|ACF58232.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369444|gb|ACF58213.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
Length = 219
Score = 89.0 bits (219), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|123979342|gb|ABM81496.1| RNA polymerase II largest subunit [Ramalina complanata]
Length = 994
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 44/85 (51%), Positives = 58/85 (68%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +LL + V+V GED LSK+ NATLLF +RS L K + Y L+ AF+ ++GE
Sbjct: 904 AVEKLLSRLVVVRGEDALSKEGQHNATLLFSAQLRSRLAFKRLVTQYNLNKLAFQHVLGE 963
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A +PGEMVG LAAQS+G
Sbjct: 964 IESRFNRAIVSPGEMVGVLAAQSIG 988
>gi|120561205|gb|ABM26988.1| RNA polymerase II largest subunit, partial [Neolecta vitellina]
Length = 997
Score = 89.0 bits (219), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 57/85 (67%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR+L K ++ G D+L+ +A ++AT L Q +RS L TK V + Y + AFEWL+GE
Sbjct: 909 GVRQLTSKLIVFRGTDKLTTEAQQDATSLSQIHIRSRLATKRVLKEYHFNKIAFEWLLGE 968
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF + PGEM G LAAQS+G
Sbjct: 969 IESRFASSVAYPGEMCGTLAAQSIG 993
>gi|194369476|gb|ACF58229.1| RNA polymerase II large subunit, partial [Meloidogyne hapla]
Length = 219
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369430|gb|ACF58206.1| RNA polymerase II large subunit, partial [Meloidogyne arenaria]
gi|194369434|gb|ACF58208.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
Length = 219
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|194369494|gb|ACF58238.1| RNA polymerase II large subunit, partial [Meloidogyne chitwoodi]
Length = 219
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GE+E RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V LL++ V+V G+D LS++ NATLLF+ L+RS L K + Y L+ AF+ ++GEI
Sbjct: 904 VNNLLDRLVVVRGDDPLSREGQHNATLLFKALLRSRLAFKRLVMEYSLNKLAFQHVLGEI 963
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 964 ESRFARAAVNPGEMVGVLAAQSIG 987
>gi|299116996|emb|CBN73767.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1904
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL E +V GED LS +A NAT+LF+ LVRS + K YRL+ AF++++GEI
Sbjct: 1048 VRELCEGLSVVTGEDSLSVEAQSNATMLFKILVRSEMSAKRTLMVYRLNKAAFDYVIGEI 1107
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+F ++ PGEM G LAAQS+G
Sbjct: 1108 HAKFMSSKVGPGEMCGVLAAQSIG 1131
>gi|194369496|gb|ACF58239.1| RNA polymerase II large subunit, partial [Meloidogyne fallax]
Length = 219
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GE+E RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|354803908|gb|AER40918.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52727]
gi|354803912|gb|AER40920.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52730]
Length = 531
Score = 88.6 bits (218), Expect = 4e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|194369486|gb|ACF58234.1| RNA polymerase II large subunit, partial [Meloidogyne chitwoodi]
gi|194369492|gb|ACF58237.1| RNA polymerase II large subunit, partial [Meloidogyne chitwoodi]
Length = 219
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GE+E RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|408691030|gb|AFU81887.1| RNA polymerase II subunit 1, partial [Fusarium tricinctum]
Length = 535
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|306413087|gb|ADM86641.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FTSC_grp2 KOD-2010]
Length = 527
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 443 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 502
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 503 LQNRWDRAFVNPGEMVGVLAAQSIG 527
>gi|194369490|gb|ACF58236.1| RNA polymerase II large subunit, partial [Meloidogyne fallax]
Length = 219
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GE+E RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|408690950|gb|AFU81847.1| RNA polymerase II subunit 1, partial [Fusicolla aquaeductuum]
Length = 529
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 66/86 (76%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV+ L++K ++V G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++G
Sbjct: 444 LGVQGLIKKILVVKGSDSISLEADSNATILFKSLIRSRLAFKEVVKEHRLNKLAFDHILG 503
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E++N++++A +PGEMVG LAAQS+G
Sbjct: 504 ELQNKWERAFVSPGEMVGVLAAQSIG 529
>gi|258563154|ref|XP_002582322.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
gi|237907829|gb|EEP82230.1| DNA-directed RNA polymerase II largest subunit [Uncinocarpus reesii
1704]
Length = 1747
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LLE+ V+V G+D +SK+A ENATLLF+ +RS L K + Y L+ AF+ ++G I
Sbjct: 965 VQALLERLVVVRGDDIISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAI 1024
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1025 ESRFAKAAANPGEMVGVLAAQSIG 1048
>gi|397135898|gb|AFO11444.1| RNA polymerase I, partial [Scheffersomyces stipitis]
Length = 872
Score = 88.6 bits (218), Expect = 5e-16, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 59/83 (71%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GVR L EK ++V G+ +L K+A NATLLFQCLVRS L ++ V E
Sbjct: 788 GRYKASDLRLDEVIVGVRSLCEKLLVVRGDTELVKEAQANATLLFQCLVRSRLASRRVIE 847
Query: 70 NYRLSSEAFEWLVGEIENRFQQA 92
++L+ +FEW+VGEIE +FQ++
Sbjct: 848 EFKLNRSSFEWVVGEIETQFQKS 870
>gi|194369442|gb|ACF58212.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
Length = 219
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA EN T+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENTTILMNTLLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTATVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|354803906|gb|AER40917.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52726]
Length = 531
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|408691026|gb|AFU81885.1| RNA polymerase II subunit 1, partial [Fusarium flocciferum]
Length = 535
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|408691002|gb|AFU81873.1| RNA polymerase II subunit 1, partial [Fusarium torulosum]
Length = 535
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|354803964|gb|AER40946.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
acuminatum]
Length = 531
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|354803898|gb|AER40913.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52714]
gi|354803982|gb|AER40955.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52933]
Length = 531
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|354803868|gb|AER40898.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25128]
Length = 531
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|306413129|gb|ADM86662.1| DNA-directed RNA polymerase II largest subunit [Fusarium
flocciferum]
gi|306413139|gb|ADM86667.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FTSC_grp2 KOD-2010]
Length = 536
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 452 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|306413085|gb|ADM86640.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FTSC_grp1 KOD-2010]
Length = 536
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 452 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|119514098|gb|ABL75822.1| RNA polymerase II largest subunit [Aspicilia caesiocinerea]
Length = 989
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 58/83 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE+L + V+V GED LSK+ NAT+LF+ +RS L K V Y L+ AF+ ++GEI
Sbjct: 907 VREMLNRLVVVRGEDALSKEGQHNATILFKAHLRSRLAFKRVVTEYALNKLAFQNVLGEI 966
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E+RF +A PGEMVG LAAQS+
Sbjct: 967 ESRFCRAAVNPGEMVGVLAAQSI 989
>gi|119514096|gb|ABL75821.1| RNA polymerase II largest subunit [Aspicilia cinerea]
Length = 989
Score = 88.2 bits (217), Expect = 5e-16, Method: Composition-based stats.
Identities = 44/83 (53%), Positives = 58/83 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE+L + V+V GED LSK+ NAT+LF+ +RS L K V Y L+ AF+ ++GEI
Sbjct: 907 VREMLNRLVVVRGEDALSKEGQHNATILFKAHLRSRLAFKRVVTEYALNKLAFQNVLGEI 966
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E+RF +A PGEMVG LAAQS+
Sbjct: 967 ESRFCRAAVNPGEMVGVLAAQSI 989
>gi|354803904|gb|AER40916.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52722]
Length = 531
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|194369436|gb|ACF58209.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
Length = 219
Score = 88.2 bits (217), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCPLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|226295248|gb|EEH50668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb18]
Length = 1746
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1013 VRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A PGEMVG LAAQS+G
Sbjct: 1073 ENRFSRAMANPGEMVGVLAAQSIG 1096
>gi|225677609|gb|EEH15893.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides
brasiliensis Pb03]
Length = 2106
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1013 VRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A PGEMVG LAAQS+G
Sbjct: 1073 ENRFSRAMANPGEMVGVLAAQSIG 1096
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL++ V+V G+D LS++A NATLLF+ +RS L K V Y L+ AF+ ++GEI
Sbjct: 937 VSDLLDRLVVVRGDDVLSREAQHNATLLFKAHLRSRLAFKRVVIEYSLNKLAFQHVLGEI 996
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 997 ESRFSRALVNPGEMVGVLAAQSIG 1020
>gi|295664232|ref|XP_002792668.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278782|gb|EEH34348.1| DNA-directed RNA polymerase II subunit RPB1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1748
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1019 VRALLDRLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAI 1078
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A PGEMVG LAAQS+G
Sbjct: 1079 ENRFSRAMANPGEMVGVLAAQSIG 1102
>gi|119514054|gb|ABL75800.1| RNA polymerase II largest subunit [Porpidia speirea]
Length = 615
Score = 88.2 bits (217), Expect = 6e-16, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 61/83 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LLE+ V+V G+D+LSK+A NATLLF+ +RS L K + + ++ AF+ ++GEI
Sbjct: 533 VRDLLERLVVVRGDDELSKEAQHNATLLFKAQLRSRLAFKRLVKENSINKLAFQHIIGEI 592
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E+RF +A PGEMVG LAAQS+
Sbjct: 593 ESRFCRAAVNPGEMVGVLAAQSI 615
>gi|408690966|gb|AFU81855.1| RNA polymerase II subunit 1, partial [Nectria ventricosa]
Length = 535
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 47/108 (43%), Positives = 69/108 (63%), Gaps = 13/108 (12%)
Query: 15 SARRIIGLN-------------IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRST 61
SA+R+ G+ + V+ELL K IV G D +S +A+ NAT+LF+ LVRS
Sbjct: 428 SAKRVFGVKANDRSNLRPSDVIVAVQELLRKIQIVRGTDPISLEADSNATILFKGLVRSR 487
Query: 62 LCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
L K + + +RL+ AF+ ++GE++NR+ +A PGEMVG LAAQS+G
Sbjct: 488 LAFKEIVKEHRLNKLAFDHVIGELQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|116182152|ref|XP_001220925.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
gi|88186001|gb|EAQ93469.1| DNA-directed RNA polymerase II largest subunit [Chaetomium globosum
CBS 148.51]
Length = 1756
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LLE+ ++V G D +SK+A+ N+T+LF+ +RS L K +A R++ AFE ++GE+
Sbjct: 1007 VKALLERMIVVRGSDPISKEADYNSTILFKIQLRSRLAYKRLAVEQRINKLAFEHILGEL 1066
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENR+ ++ APGEMVG LAAQS+G
Sbjct: 1067 ENRWSRSMVAPGEMVGVLAAQSIG 1090
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 87.8 bits (216), Expect = 7e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR L E+ VIV G D ++K+ NATLLF +R +L + V + + L+ EAF+W++GEI
Sbjct: 923 VRNLGERLVIVRGNDNIAKELQYNATLLFLMHMRGSLACRPVLQEHHLNREAFDWVIGEI 982
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F QA PGEM G LAAQS+G
Sbjct: 983 EAKFNQALVNPGEMCGTLAAQSIG 1006
>gi|58395873|gb|AAW72750.1| RNA polymerase II largest subunit [Fomitopsis pinicola]
Length = 259
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 58/83 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VREL E+ V+V G +++ +A NATLLF+ +R+T + V E + L+ EAFEW++GEI
Sbjct: 177 VRELTERLVVVRGGSRIALEAQHNATLLFRIHLRATFAARRVLERHHLNREAFEWVLGEI 236
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E +F Q+ PGEM G LAAQS+
Sbjct: 237 EAKFNQSVAHPGEMCGTLAAQSI 259
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
VRELL++ ++V G+D LSK++ NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 907 VRELLDRLIVVRGDDDLSKESQHNATLLFKAQLRSRLAFKRLVMEN-SLNRLAFQHVLGE 965
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 966 IESRFCRATVNPGEMVGVLAAQSIG 990
>gi|409193803|gb|AFV31135.1| RNA polymerase II largest subunit [Amoeboaphelidium protococcarum]
Length = 1767
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+EL K I+ +D+ + + ENA+LLF+ L+RS L TK + + + L+ AF W++GEI
Sbjct: 1003 VQELASKINIINTQDKCTAELKENASLLFRILLRSVLATKRILQEFHLTKAAFSWILGEI 1062
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E++F Q+ AP EMVG +AAQS+G
Sbjct: 1063 ESKFHQSMVAPNEMVGTIAAQSIG 1086
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A ENATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1012 VRQLLDRLLVVRGDDPLSREAQENATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 1071
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1072 ESRFGKAAANPGEMVGVLAAQSIG 1095
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 58/81 (71%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L ++ ++V G+D+LS+ A +NATL+F L+RS L T+ V E Y L+ EAF+W++GE+E
Sbjct: 1009 LADRLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQI 1068
Query: 89 FQQAQCAPGEMVGALAAQSLG 109
F +A EMVG LAAQS+G
Sbjct: 1069 FNKAVVNAAEMVGTLAAQSIG 1089
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/81 (49%), Positives = 58/81 (71%)
Query: 29 LLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
L ++ ++V G+D+LS+ A +NATL+F L+RS L T+ V E Y L+ EAF+W++GE+E
Sbjct: 1009 LADRLLVVRGDDKLSRAAQKNATLVFNMLLRSHLATRRVLEEYHLNREAFDWVIGEVEQI 1068
Query: 89 FQQAQCAPGEMVGALAAQSLG 109
F +A EMVG LAAQS+G
Sbjct: 1069 FNKAVVNAAEMVGTLAAQSIG 1089
>gi|302835796|ref|XP_002949459.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
gi|300265286|gb|EFJ49478.1| hypothetical protein VOLCADRAFT_80692 [Volvox carteri f. nagariensis]
Length = 1879
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 42/89 (47%), Positives = 58/89 (65%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+ V++L + V+V G D LS +A NAT++F +VR L K V Y+L+ +AF+WL+G
Sbjct: 1013 VKVQDLCRRLVVVVGSDGLSVEAQRNATIMFHSMVRMHLAVKRVLSEYKLNQKAFDWLLG 1072
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLGTST 112
EIE RF A PG+ VG +AAQSLG T
Sbjct: 1073 EIETRFFLALSHPGDCVGTVAAQSLGEPT 1101
>gi|313225875|emb|CBY21018.1| unnamed protein product [Oikopleura dioica]
Length = 928
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 15/124 (12%)
Query: 1 MVKSVRNSPAQYSGSAR----RIIGLNIGVRELLEKCVIVAGE-DQLSK----------Q 45
+VK++ ++ +Y G+ R II G L E V E DQL K +
Sbjct: 24 LVKAMESAVVRYDGTVRISNNNIIQFRYGEDGLAEIHSKVDEEFDQLIKDRETVHPLSIE 83
Query: 46 ANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAA 105
A NAT+LF +RST+C+K V E Y L+S+AF++++GEIE++F A PGEM+GALAA
Sbjct: 84 AQNNATMLFNIHMRSTMCSKRVIEEYYLNSQAFDYIIGEIESKFNAAITHPGEMIGALAA 143
Query: 106 QSLG 109
QSLG
Sbjct: 144 QSLG 147
>gi|149794940|gb|ABR31766.1| RNA polymerase II largest subunit [Spiromastix warcupii]
Length = 636
Score = 87.8 bits (216), Expect = 8e-16, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ V+V GED +SK+A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 546 VRALLDRLVVVRGEDSISKEAQESATLLFKAQLRSRLAFRRLVTEYSLNKLAFQHVLGAI 605
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF +A PGEMVG LAAQS+G
Sbjct: 606 ETRFAKATANPGEMVGVLAAQSIG 629
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 87.4 bits (215), Expect = 9e-16, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ VIV G+D +SK+A E+AT+LF+ +RS L K + Y ++ AF+ ++G I
Sbjct: 1010 VQSLLDRLVIVRGDDPISKEAQESATMLFKAQLRSRLAFKRLVTQYSMNKLAFQHVLGAI 1069
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1070 ESRFAKAAAAPGEMVGVLAAQSIG 1093
>gi|13096059|gb|AAK11902.2| RNA polymerase II largest subunit [Lithobius forficatus]
Length = 91
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 7 NSPAQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKL 66
N +Q S ++I G L++K IV G D LS QANZNATL+F+ L+RSTLC K
Sbjct: 5 NXRSQTDLSPLKVIE---GCEXLIKKLTIVPGXDPLSIQANZNATLMFRSLLRSTLCCKK 61
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAP 96
+ E RL++EA+EWL+GEI+++F Q+Q P
Sbjct: 62 ICETERLTTEAYEWLLGEIDSKFHQSQAQP 91
>gi|110669618|gb|ABG81904.1| RNA polymerase II largest subunit [Simonyella variegata]
Length = 1013
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/84 (52%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LLE+ VIV G+D LS +A E+ATLL + +RS L K V E Y L+ AF+ ++G++
Sbjct: 923 VQQLLERLVIVRGDDPLSLEAQESATLLIKAHLRSRLAFKRVVEEYSLNKLAFDNILGDV 982
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A + GEMVG LAAQS+G
Sbjct: 983 ENRFTRAAVSAGEMVGVLAAQSIG 1006
>gi|194369432|gb|ACF58207.1| RNA polymerase II large subunit, partial [Meloidogyne javanica]
Length = 219
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQ ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQTQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V L + ++V GED +S +A +NAT+LF +RST T+ V E RL+ +AF+W++GE+
Sbjct: 887 VAGLSSRLIVVRGEDPISLEAQDNATMLFNMHLRSTFATRPVLEELRLTKQAFDWIIGEV 946
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F + PGEM G LAAQS+G
Sbjct: 947 ETKFNASIVNPGEMCGTLAAQSIG 970
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 27 RELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIE 86
+ L + V+V G+D +S+++ NATLLF L+RS L T+ V E+Y LS AF+W+ GEIE
Sbjct: 998 QALSDSLVVVRGDDPISRESQRNATLLFNILLRSQLATRRVLEDYHLSRVAFDWVCGEIE 1057
Query: 87 NRFQQAQCAPGEMVGALAAQSLG 109
F +A A EMVG LAAQS+G
Sbjct: 1058 TLFNRAIVAAAEMVGTLAAQSIG 1080
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 87.4 bits (215), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 27 RELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIE 86
+ L + V+V G+D +S+++ NATLLF L+RS L T+ V E+Y LS AF+W+ GEIE
Sbjct: 998 QALSDSLVVVRGDDPISRESQRNATLLFNILLRSQLATRRVLEDYHLSRVAFDWVCGEIE 1057
Query: 87 NRFQQAQCAPGEMVGALAAQSLG 109
F +A A EMVG LAAQS+G
Sbjct: 1058 TLFNRAIVAAAEMVGTLAAQSIG 1080
>gi|157841372|gb|ABV83140.1| RNA polymerase 2 [Oscheius dolichura]
Length = 273
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 51/66 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L EK +IV GED++SKQA NATLL L+RSTLC K +A ++L+ EAFEWL+GE
Sbjct: 207 GVRSLSEKLIIVGGEDRISKQAQYNATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGE 266
Query: 85 IENRFQ 90
IE RF+
Sbjct: 267 IETRFK 272
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE L++ +++ G D+LS +A +AT LF+ +R+ L K +A +RL+ EA ++++GE+
Sbjct: 1004 VRETLDRLIVIRGTDELSIEAQNSATQLFKAHLRARLAFKKLAVQHRLNKEALKYILGEL 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1064 EDRFLKAAVAPGEMVGVLAAQSIG 1087
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VRE L++ +++ G D+LS +A +AT LF+ +R+ L K +A +RL+ EA ++++GE+
Sbjct: 1004 VRETLDRLIVIRGTDELSIEAQNSATQLFKAHLRARLAFKKLAVQHRLNKEALKYILGEL 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A APGEMVG LAAQS+G
Sbjct: 1064 EDRFLKAAVAPGEMVGVLAAQSIG 1087
>gi|110669627|gb|ABG81908.1| RNA polymerase II largest subunit [Astrothelium cinnamomeum]
Length = 1021
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 64/84 (76%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ +++ GED+LS++A+ +AT+LF+ L+R+ L K + + L+ AFE ++G+I
Sbjct: 931 VRDLLDRLIVIRGEDRLSQEADHSATILFKVLLRARLAFKRLVAQHSLNKLAFENVLGDI 990
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF ++ +PGEMVG LAAQS+G
Sbjct: 991 EARFSRSLVSPGEMVGVLAAQSIG 1014
>gi|57472128|gb|AAW51141.1| RNA polymerase II largest subunit [Fibulorhizoctonia sp. LA082103L]
Length = 253
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 59/83 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+REL ++ ++V G+D LS +A NATL F+ +R+T ++ V E + L+ EAFEW++GE+
Sbjct: 171 LRELCDRLIVVRGDDPLSVEAQANATLTFRMHLRATFASRRVLEKFHLNKEAFEWVMGEV 230
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E +F Q+ PGEM G L+AQS+
Sbjct: 231 EAKFNQSVANPGEMCGTLSAQSI 253
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LLE+ ++V G+D LS++A NAT+LF+ +RS L K + L+ AF+ ++GEI
Sbjct: 926 VRDLLERLIVVRGDDDLSREAQHNATMLFKAQLRSRLAFKRLVMEASLNKLAFQHVLGEI 985
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 986 ESRFCRAAVNPGEMVGVLAAQSIG 1009
>gi|408691074|gb|AFU81909.1| RNA polymerase II subunit 1, partial [Fusarium nurragi]
Length = 535
Score = 87.0 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR LL+ IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 GVRNLLKNMKIVRGTDDISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|194369428|gb|ACF58205.1| RNA polymerase II large subunit, partial [Meloidogyne arenaria]
Length = 219
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/68 (63%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ +L+ EAFEWL+GEIE RF A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQRKLNEEAFEWLLGEIETRFCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|408691020|gb|AFU81882.1| RNA polymerase II subunit 1, partial [Fusarium anguioides]
Length = 535
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/85 (50%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR LLE IV G DQ+S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVRNLLENMKIVRGTDQISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|194369488|gb|ACF58235.1| RNA polymerase II large subunit, partial [Meloidogyne chitwoodi]
Length = 219
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+ KQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GE+E RF A PGEMVG
Sbjct: 2 IGKQAQENATILMNILLRSALCSLKMAKQHKLNEEAFEWLLGEVETRFCTAVVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|325090959|gb|EGC44269.1| RNA polymerase II largest subunit [Ajellomyces capsulatus H88]
Length = 1747
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LLE+ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1013 VRALLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFSKAMANPGEMVGVLAAQSIG 1096
>gi|194369456|gb|ACF58219.1| RNA polymerase II large subunit, partial [Meloidogyne incognita]
Length = 219
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 42 LSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVG 101
+SKQA ENAT+L L+RS LC+ +A+ ++L+ EAFEWL+GEIE R A PGEMVG
Sbjct: 2 ISKQAQENATILMNILLRSMLCSLKMAKQHKLNEEAFEWLLGEIETRLCTAIVQPGEMVG 61
Query: 102 ALAAQSLG 109
ALAAQSLG
Sbjct: 62 ALAAQSLG 69
>gi|372292153|gb|AEX91899.1| RNA polymerase II largest subunit [Peltigera membranacea]
Length = 1737
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V++LL++ VIV G+D LS++A +NAT+LF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 999 VQDLLDRLVIVRGDDSLSREAQQNATILFKAQIRSRLAFKRLVIEN-SLNKLAFQHVLGE 1057
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 1058 IESRFCKAAVNPGEMVGVLAAQSIG 1082
>gi|290983563|ref|XP_002674498.1| RNA polymerase II [Naegleria gruberi]
gi|284088088|gb|EFC41754.1| RNA polymerase II [Naegleria gruberi]
Length = 1757
Score = 86.7 bits (213), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L + V++ G D+LS +A NATLLF +RST +K+V + L+ EAF++LVGEI
Sbjct: 999 IKKLCDDLVVIKGTDELSTEAQTNATLLFSMFLRSTFSSKVVLKELCLTQEAFDFLVGEI 1058
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
RF PGEMVG++AAQS+G
Sbjct: 1059 RMRFHNCLAQPGEMVGSVAAQSIG 1082
>gi|157841460|gb|ABV83195.1| RNA polymerase 2 [Pellioditis sp. JU274]
Length = 280
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 5/90 (5%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVR 59
+ N+ + R++ LN GVR L +K +IV+GED++SKQA NATLL L+R
Sbjct: 191 IWNAQKIFKVETRKLTNLNPTRVIDGVRNLSKKLIIVSGEDRISKQAQYNATLLMNILLR 250
Query: 60 STLCTKLVAENYRLSSEAFEWLVGEIENRF 89
STLC+K +A Y+L++EAFEWL+GE+E R
Sbjct: 251 STLCSKKMASTYKLNAEAFEWLLGEVETRL 280
>gi|320038943|gb|EFW20878.1| DNA-directed RNA polymerase II largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1750
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ V+V G+D +SK+A ENATLLF+ +RS L K + Y L+ AF+ ++G I
Sbjct: 1013 VQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFAKAAANPGEMVGVLAAQSIG 1096
>gi|303317798|ref|XP_003068901.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108582|gb|EER26756.1| DNA-directed RNA polymerase II largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1746
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ V+V G+D +SK+A ENATLLF+ +RS L K + Y L+ AF+ ++G I
Sbjct: 1013 VQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFAKAAANPGEMVGVLAAQSIG 1096
>gi|119186393|ref|XP_001243803.1| hypothetical protein CIMG_03244 [Coccidioides immitis RS]
gi|392870516|gb|EAS32326.2| DNA-directed RNA polymerase II largest subunit [Coccidioides immitis
RS]
Length = 1750
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ V+V G+D +SK+A ENATLLF+ +RS L K + Y L+ AF+ ++G I
Sbjct: 1013 VQGLLDRLVVVRGDDVISKEAQENATLLFKAQLRSRLAFKRLVVEYSLNKLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFAKAAANPGEMVGVLAAQSIG 1096
>gi|354803950|gb|AER40939.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
torulosum]
Length = 531
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 GVRNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|110669622|gb|ABG81906.1| RNA polymerase II largest subunit [Dermatocarpon miniatum]
Length = 1011
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ ++V GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 921 VKQLLDRLIVVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 980
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF +A +PGEMVG LAAQS+G
Sbjct: 981 ETRFIKAAASPGEMVGVLAAQSIG 1004
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ ++V G+D +S++A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1010 VRSLLDRLLVVRGDDPISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAI 1069
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1070 ESRFAKAGANPGEMVGVLAAQSIG 1093
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
IGV++L + +++ G++++ + A ++A LF CL+RS L T+ V + Y+LS +AFEW++
Sbjct: 988 IGVKDLQDNLLVLRGKNEIIQNAQQDAVTLFCCLLRSRLATRRVLQEYKLSKQAFEWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
+E +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NVEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|408690976|gb|AFU81860.1| RNA polymerase II subunit 1, partial [Fusicolla sp. KOD-2012a]
Length = 532
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 448 AVQALLKKITIVKGTDSISIEADANATILFKALIRSRLAFKEVVKGHRLNKLAFDHILGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++ +A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWDRAFVSPGEMVGVLAAQSIG 532
>gi|149794933|gb|ABR31762.1| RNA polymerase II largest subunit [Polyblastia melaspora]
Length = 1003
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 59/83 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 921 VRQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 980
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RF +A +PGEMVG LAAQS+
Sbjct: 981 ETRFIKATASPGEMVGVLAAQSI 1003
>gi|157841476|gb|ABV83204.1| RNA polymerase 2 [Oscheius dolichura]
Length = 371
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/60 (66%), Positives = 47/60 (78%)
Query: 50 ATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
ATLL L+RSTLC K +A ++L+ EAFEWL+GEIE RF+ A PGEMVGALAAQSLG
Sbjct: 1 ATLLMNILLRSTLCAKKMASTHKLNQEAFEWLLGEIETRFKAAVAQPGEMVGALAAQSLG 60
>gi|408690958|gb|AFU81851.1| RNA polymerase II subunit 1, partial [Fusarium heterosporum]
Length = 535
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR +LE IV G D++S +A+ +A++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 GVRNMLENMKIVRGTDEISLEADASASILFKALLRSRLAFKEVVKEHRLNKLAFDYVLGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|111278791|gb|ABH09093.1| RNA polymerase II largest subunit [Staurothele frustulenta]
Length = 1010
Score = 86.3 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/83 (51%), Positives = 59/83 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y LS AF+ +VG +
Sbjct: 928 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLSRLAFDHVVGAV 987
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E RF +A +PGEMVG LAAQS+
Sbjct: 988 ETRFIKATASPGEMVGVLAAQSI 1010
>gi|225561523|gb|EEH09803.1| RNA polymerase II largest subunit [Ajellomyces capsulatus G186AR]
Length = 1234
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LLE+ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 500 VRALLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAI 559
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 560 ESRFSKAMANPGEMVGVLAAQSIG 583
>gi|120561199|gb|ABM26985.1| RNA polymerase II largest subunit, partial [Trichophyton rubrum]
Length = 1015
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 928 VRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 987
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 988 ESRFGKAAANPGEMVGVLAAQSIG 1011
>gi|358390960|gb|EHK40365.1| hypothetical protein TRIATDRAFT_89498 [Trichoderma atroviride IMI
206040]
Length = 1756
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ K IV GED +SK+A+ +AT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 1004 VRDVISKLKIVRGEDPISKEADASATILFKSLLRSRLAFKEVVKEHRLNKLAFDHVLGEL 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ PGEMVG LAAQS+G
Sbjct: 1064 QNRWDRSFVNPGEMVGVLAAQSIG 1087
>gi|408691034|gb|AFU81889.1| RNA polymerase II subunit 1, partial [Fusarium sp. NRRL 25533]
gi|408691036|gb|AFU81890.1| RNA polymerase II subunit 1, partial [Fusarium babinda]
Length = 535
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR++L+ IV G DQ+S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVRDMLDNMKIVRGTDQISLEADANASILFKSLLRSRLAFKEVVKEHRLNKLAFDHIIGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V +LL++ VIV G+D+LSK+ NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 926 VDQLLDRLVIVRGDDELSKEGQHNATLLFKAQLRSRLAFKRLVMEN-SLNKLAFQHVLGE 984
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 985 IESRFSRAVVNPGEMVGVLAAQSIG 1009
>gi|354803870|gb|AER40899.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25529]
gi|354803872|gb|AER40900.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25531]
gi|354803874|gb|AER40901.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25533]
gi|354803944|gb|AER40936.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52759]
Length = 531
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR++L+ IV G DQ+S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVRDMLDNMKIVRGTDQISLEADANASILFKSLLRSRLAFKEVVKEHRLNKLAFDHIIGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|397135882|gb|AFO11436.1| RNA polymerase I, partial [Spathaspora passalidarum]
Length = 872
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 58/83 (69%)
Query: 10 AQYSGSARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAE 69
+Y S R+ + +GVR+L K ++V G+ LSK+A NATLLFQCL+RS L + V E
Sbjct: 788 GRYKASDLRLDEIILGVRQLCTKLLVVRGDSPLSKEAQANATLLFQCLLRSRLAARRVIE 847
Query: 70 NYRLSSEAFEWLVGEIENRFQQA 92
++L+ +FEW+VGEIE +FQ++
Sbjct: 848 EFKLNRASFEWVVGEIETQFQKS 870
>gi|154282795|ref|XP_001542193.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
gi|150410373|gb|EDN05761.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1747
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR +LE+ V+V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1013 VRAMLERLVVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFSKAMANPGEMVGVLAAQSIG 1096
>gi|110669631|gb|ABG81910.1| RNA polymerase II largest subunit [Peltigera degenii]
Length = 1011
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V++LL++ VIV G+D LS++A +NAT+LF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 921 VQDLLDRLVIVRGDDSLSREAQQNATILFKAQLRSRLAFKRLVIEN-SLNKLAFQHVLGE 979
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 980 IESRFCKAAVNPGEMVGVLAAQSIG 1004
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 989 VRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 1048
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1049 ESRFGKAAANPGEMVGVLAAQSIG 1072
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/85 (42%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+++L E+ +++ G+ ++ ++A ++A LF CLVRS L T+ + + YRL+ +AFEW++
Sbjct: 989 GLKDLEERLLVLRGKSEIIQKAQDDAITLFCCLVRSRLSTRRILQEYRLTKQAFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E +F ++ PGEMVG LAAQS+G
Sbjct: 1049 VEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|358370099|dbj|GAA86711.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus kawachii
IFO 4308]
Length = 1747
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ ++V G+D +S++A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1009 VRSLLDRLLVVRGDDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAI 1068
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1069 ESRFAKAGANPGEMVGVLAAQSIG 1092
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
+ +L E+ +V G+D +S +A +NATL F +R+T +K V YRL+ EAFEW++ E
Sbjct: 1008 AIDKLQERLKVVPGDDAISIEAQKNATLFFNIHLRATFASKRVLREYRLTREAFEWIIDE 1067
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
I RF Q+ AP EM+G +AAQS+G
Sbjct: 1068 IVWRFSQSLVAPSEMIGCVAAQSIG 1092
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1012 VRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 1071
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1072 ESRFGKAAANPGEMVGVLAAQSIG 1095
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1012 VRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 1071
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1072 ESRFGKAAANPGEMVGVLAAQSIG 1095
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 903 VRQLLDRLLVVRGDDALSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 962
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 963 ESRFGKAAANPGEMVGVLAAQSIG 986
>gi|308808522|ref|XP_003081571.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
gi|116060036|emb|CAL56095.1| DNA-directed RNA polymerase (ISS) [Ostreococcus tauri]
Length = 1673
Score = 85.9 bits (211), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V ELL K ++VAG D LS +A N TLLF VR+ L K V ++++L+ F+W++GE+
Sbjct: 1006 VAELLPKLIVVAGTDPLSIEAQRNGTLLFFAHVRANLAAKRVLKDHKLTRAGFDWVIGEV 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+ A PG+ +G +AAQS+G
Sbjct: 1066 ESRFKMALAPPGDGIGVVAAQSIG 1089
>gi|408691092|gb|AFU81918.1| RNA polymerase II subunit 1, partial [Hypocrea sp. NRRL 54000]
Length = 534
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ K IV G+D +SK+A+ +AT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 451 VRDVISKLKIVRGDDPISKEADNSATILFKALIRSRLAFKEVVKEHRLNKLAFDHVLGEL 510
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ PGEMVG LAAQS+G
Sbjct: 511 QNRWDRSFVNPGEMVGVLAAQSIG 534
>gi|169616762|ref|XP_001801796.1| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
gi|160703256|gb|EAT81264.2| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]
Length = 1720
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL+ V++ G D LS +A +AT LF+C +RS L K V LS +A ++++GE+
Sbjct: 1011 VRDLLDSLVVIRGNDPLSVEAQASATYLFKCHLRSRLAFKRVVVEESLSKKALDYILGEL 1070
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
++RF +A APGEMVG LAAQS+G
Sbjct: 1071 QDRFLKAAVAPGEMVGVLAAQSIG 1094
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum CBS
118893]
Length = 1748
Score = 85.5 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ ++V G+D LS++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1012 VRQLLDRLLVVRGDDPLSREAQESATLLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAI 1071
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1072 ESRFGKAAANPGEMVGVLAAQSIG 1095
>gi|440636420|gb|ELR06339.1| DNA-directed RNA polymerase II subunit A [Geomyces destructans
20631-21]
Length = 1728
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL+K +IV GED LS +A +NATLL + +R L K VA + +LS AF+ +GE+
Sbjct: 1006 VRNLLDKMMIVRGEDSLSIEAQKNATLLIKAQLRQRLAFKRVAIHQKLSKLAFDKAIGEL 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF A PGEMVG LAAQS+G
Sbjct: 1066 ESRFTHALVNPGEMVGILAAQSIG 1089
>gi|38232287|gb|AAR14979.1| RNA polymerase II largest subunit [Libinia emarginata]
Length = 91
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 46/71 (64%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V + KC V G D +S QANENAT FQC VRSTLCTK VAE +L +E F WL GEI
Sbjct: 21 VSXMXXKCXXVXGXDXISLQANENATXXFQCXVRSTLCTKKVAEXXKLXTEXFNWLXGEI 80
Query: 86 ENRFQQAQCAP 96
E RF QA P
Sbjct: 81 ETRFXQAIAXP 91
>gi|351518437|gb|AEQ39959.1| RNA polymerase II largest subunit [Lecophagus sp. ATCC 56071]
Length = 1000
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/83 (48%), Positives = 58/83 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+EL+ + VIV G D+LS +A +NAT LF+ V+ L K + Y +++ A +W++GE+
Sbjct: 918 VQELMSRLVIVRGSDRLSLEAQDNATTLFRAHVQGRLAFKRLVMEYHMTNVALDWVLGEV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
ENRF +A PGEMVG LAAQS+
Sbjct: 978 ENRFARAIVPPGEMVGVLAAQSI 1000
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 833 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 892
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 893 NIEAQFLRSVVHPGEMVGVLAAQSIG 918
>gi|123979348|gb|ABM81499.1| RNA polymerase II largest subunit [Erioderma verruculosum]
Length = 995
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LLE+ V+V G+D LSK+ NATLLF+ +RS L K + L+ AF+ ++GEI
Sbjct: 906 VQDLLERLVVVRGDDDLSKEGQHNATLLFKAQLRSRLAFKRLIMESSLNKLAFQHVLGEI 965
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 966 ESRFCRAAVNPGEMVGVLAAQSIG 989
>gi|408690938|gb|AFU81841.1| RNA polymerase II subunit 1, partial [Fusarium ambrosium]
Length = 535
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+ IV G D LS++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNLLDHMKIVRGSDPLSQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741552|gb|ABV69481.1| RNA polymerase II largest subunit, partial [Thelidium decipiens]
Length = 999
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LLE+ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 IKQLLERLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFTKAIASPGEMVGVLAAQS 999
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|212533501|ref|XP_002146907.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210072271|gb|EEA26360.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1744
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ V+V G+D +SK+A +ATLLF+ +RS L K + Y ++ AF+ ++G I
Sbjct: 1011 VQALLDRLVVVRGDDVISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFKHVLGAI 1070
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF QAQ PGEMVG LAAQS+G
Sbjct: 1071 EMRFAQAQANPGEMVGVLAAQSIG 1094
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V+ELL++ V+V G D+LS++A NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 918 VQELLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMEN-SLNKLAFQHVLGE 976
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 977 IESRFCRAAVNPGEMVGVLAAQSIG 1001
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 85.5 bits (210), Expect = 4e-15, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ I+ G+D+LSK+A+ NATLL + L RS L K + + +LS A + ++G+I
Sbjct: 1007 VRSLLDRLKIIRGDDELSKEADLNATLLCKALFRSRLAFKRLVKEDKLSKLALDNILGDI 1066
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1067 ENRFLRALVSPGEMVGVLAAQSIG 1090
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd Lesion
Length = 1732
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|408691088|gb|AFU81916.1| RNA polymerase II subunit 1, partial [Cosmospora coccinea]
Length = 532
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ IV G D +SK+AN NAT+L++ L+RS L K V + +RL+ AF++++GEI
Sbjct: 449 VRDMVNSMTIVRGADPISKEANSNATILWKALLRSRLAFKEVVKVHRLNKLAFDYVLGEI 508
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
++R+ + +PGEMVG LAAQS+G
Sbjct: 509 QSRWDRCYISPGEMVGVLAAQSIG 532
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1; Short=RNA
polymerase II subunit 1; Short=RNA polymerase II subunit
B1; AltName: Full=DNA-directed RNA polymerase III largest
subunit; AltName: Full=RNA polymerase II subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed With
The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With Substrate
Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial Rdrp
Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In Complex
With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A T-U
Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A T-U
Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation Complex
E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 85.1 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|156835819|ref|XP_001642173.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156112609|gb|EDO14315.1| hypothetical protein Kpol_162p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 1311
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL K +++ G+ ++ ++A +A LF CL+RS L + V E YRL+ +AF+W++
Sbjct: 671 GVKELESKLLVLRGKSKIIEEAQNDAITLFCCLLRSRLAARRVLEEYRLTKQAFDWVLSN 730
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F ++ PGEMVG LAAQS+G
Sbjct: 731 IESQFLRSIVHPGEMVGVLAAQSIG 755
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ ++V G+D +S++A ENAT+LF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1010 VRSLLDRLLVVRGDDPISREAQENATMLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAI 1069
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1070 ESRFAKAAANPGEMVGVLAAQSIG 1093
>gi|440467914|gb|ELQ37108.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae Y34]
gi|440478660|gb|ELQ59479.1| DNA-directed RNA polymerase II subunit RPB1 [Magnaporthe oryzae P131]
Length = 1745
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LE+ V+V G+D +SK+AN N+++LF+ +RS L K +A RL+ AF+ ++GE+
Sbjct: 991 VKGFLERMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEM 1050
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+R+Q++ +PGEMVG LAAQS+G
Sbjct: 1051 ESRWQRSFVSPGEMVGVLAAQSIG 1074
>gi|408690978|gb|AFU81861.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012f]
Length = 535
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ +L IV G D +S++A+ NA++LF+ L+RS L K V + +RLS AF+ ++GE
Sbjct: 451 GVQNMLGNMKIVRGTDHISQEADLNASILFKALLRSRLAFKEVVKEHRLSKLAFDHVLGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|389631979|ref|XP_003713642.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
gi|351645975|gb|EHA53835.1| DNA-directed RNA polymerase II largest subunit [Magnaporthe oryzae
70-15]
Length = 1757
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LE+ V+V G+D +SK+AN N+++LF+ +RS L K +A RL+ AF+ ++GE+
Sbjct: 1003 VKGFLERMVVVPGDDPISKEANYNSSILFKAQLRSRLAFKRLAVRERLNRIAFDHVIGEM 1062
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+R+Q++ +PGEMVG LAAQS+G
Sbjct: 1063 ESRWQRSFVSPGEMVGVLAAQSIG 1086
>gi|157741528|gb|ABV69469.1| RNA polymerase II largest subunit, partial [Placocarpus schaereri]
Length = 999
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|110669629|gb|ABG81909.1| RNA polymerase II largest subunit [Roccella fuciformis]
Length = 1017
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V+ LL ++V G+D LS++A E+AT+L + LVRS L K +V +Y+L++ AF+ ++G+
Sbjct: 926 VKRLLGSLMVVRGDDPLSQEAQESATMLVKALVRSRLAYKRIVRGDYKLNNLAFDNILGD 985
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IENRF +A +PGEMVG L+AQS+G
Sbjct: 986 IENRFTRAAVSPGEMVGVLSAQSIG 1010
>gi|350638666|gb|EHA27022.1| DNA-directed RNA polymerase II, largest subunit [Aspergillus niger
ATCC 1015]
Length = 1743
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ ++V G D +S++A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1009 VRSLLDRLLVVRGNDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAI 1068
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1069 ESRFAKAGANPGEMVGVLAAQSIG 1092
>gi|145230824|ref|XP_001389676.1| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus niger CBS
513.88]
gi|134055799|emb|CAK37321.1| unnamed protein product [Aspergillus niger]
Length = 1747
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR LL++ ++V G D +S++A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1009 VRSLLDRLLVVRGNDIISREAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAI 1068
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1069 ESRFAKAGANPGEMVGVLAAQSIG 1092
>gi|157841484|gb|ABV83208.1| RNA polymerase 2 [Choriorhabditis cristata]
Length = 378
Score = 85.1 bits (209), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/53 (69%), Positives = 47/53 (88%)
Query: 57 LVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
L+RSTLC+K +A +++L++EAFEWL+GE+E RFQQA PGEMVGALAAQSLG
Sbjct: 3 LIRSTLCSKKMATSHKLNAEAFEWLLGEVETRFQQAIAQPGEMVGALAAQSLG 55
>gi|408691106|gb|AFU81925.1| RNA polymerase II subunit 1, partial [Cosmospora arxii]
Length = 532
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ IV G D +S++AN+NAT+L++ L+RS L K V + +RL+ AF++++GEI
Sbjct: 449 VRDMVNGMTIVRGPDPISREANDNATILWKALLRSRLAFKEVVKVHRLNKLAFDYVLGEI 508
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
++R+ + +PGEMVG LAAQS+G
Sbjct: 509 QSRWDRCYVSPGEMVGVLAAQSIG 532
>gi|386683448|gb|AFJ19492.1| DNA-directed RNA polymerase II subunit [Peltigera malacea]
Length = 1737
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 64/85 (75%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V++LL++ VIV G+D LS++A +NAT+LF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 999 VQDLLDRLVIVRGDDILSREAQQNATILFKAQLRSRLAFKRLVMEN-SLNKLAFQHVLGE 1057
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 1058 IESRFCKAAVNPGEMVGVLAAQSIG 1082
>gi|113957534|gb|ABI49121.1| RNA polymerase II largest subunit [Pyxine subcinerea]
Length = 1015
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V +LL++ V+V G+D LSK++ NATLLF+ +RS L K + L+ AF+ ++GEI
Sbjct: 925 VNDLLDRLVVVRGDDALSKESQHNATLLFKAQLRSRLAFKRLVLESSLNKLAFQHVLGEI 984
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A +PGEMVG LAAQS+G
Sbjct: 985 ESRFCRATVSPGEMVGVLAAQSIG 1008
>gi|157741572|gb|ABV69491.1| RNA polymerase II largest subunit, partial [Verrucaria dolosa]
Length = 999
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157841392|gb|ABV83150.1| RNA polymerase 2 [Brevibucca saprophaga]
Length = 386
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 38/53 (71%), Positives = 46/53 (86%)
Query: 57 LVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
L+RSTLC+K VAE ++L++EAFEWL+GEIE +F QA PGEMVGALAAQSLG
Sbjct: 3 LLRSTLCSKKVAEKHKLNTEAFEWLLGEIETKFNQAIAQPGEMVGALAAQSLG 55
>gi|58395927|gb|AAW72759.1| RNA polymerase II largest subunit [Lactarius deceptivus]
Length = 231
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 57/84 (67%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+EL ++ ++V DQ+S++ NATL F +R+T T+ V E Y L+ EAF+W++GE
Sbjct: 148 AVKELQKRLIVVRNSDQISRECQANATLNFCMHLRATFATRRVLERYHLTREAFDWVLGE 207
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
+E +F Q+ PGEM G LAAQS+
Sbjct: 208 VETKFNQSVVNPGEMCGTLAAQSI 231
>gi|408690996|gb|AFU81870.1| RNA polymerase II subunit 1, partial [Cylindrocarpon cylindroides]
Length = 535
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+ ++E+L K IV G+D +S +A+ NAT+L++ LVRS L K + + +RL+ AF+ ++G
Sbjct: 450 VSIQEMLRKMKIVRGKDPISDEADANATILWKALVRSRLSFKEIVKEHRLNKLAFDHILG 509
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E+ NR+ +A +PGEMVG LAAQS+G
Sbjct: 510 ELLNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741622|gb|ABV69516.1| RNA polymerase II largest subunit, partial [Verrucula granulosaria]
Length = 999
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157841470|gb|ABV83201.1| RNA polymerase 2 [Rhabditis blumi]
Length = 151
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 50/60 (83%)
Query: 50 ATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
ATLL L+RSTLC++ +A ++L++EAFEWL+GE+E RF+QA PGEMVGALAAQSLG
Sbjct: 1 ATLLMNILLRSTLCSRKMAFQHKLNAEAFEWLLGEVETRFKQAIAQPGEMVGALAAQSLG 60
>gi|157741620|gb|ABV69515.1| RNA polymerase II largest subunit, partial [Verrucula arnoldaria]
Length = 999
Score = 84.7 bits (208), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157741630|gb|ABV69520.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157741628|gb|ABV69519.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157741626|gb|ABV69518.1| RNA polymerase II largest subunit, partial [Verrucula inconnexaria]
Length = 999
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|408690928|gb|AFU81836.1| RNA polymerase II subunit 1, partial [Fusarium cavispermum]
Length = 532
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ + IV G D +S++A+ NAT+LF+ L+RS L K + + +RL+ AF++++GEI
Sbjct: 449 VRDMINQMTIVRGADSISREADSNATILFKALLRSRLAFKEIVKVHRLNKLAFDFIMGEI 508
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
++R+ + +PGEMVG LAAQS+G
Sbjct: 509 QSRWDRCFISPGEMVGVLAAQSIG 532
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 58/85 (68%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ L +K +++ G ++ K A ++A LF CL+RS L T+ V E YRL+ +AFEW++
Sbjct: 989 AVKNLQDKLLVLRGNSEIIKNAQQDAVSLFCCLMRSRLATRRVIEEYRLTKQAFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEIQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|157741618|gb|ABV69514.1| RNA polymerase II largest subunit, partial [Verrucula biatorinaria]
Length = 999
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 60/82 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV G+D++S++A ENATLL + +RS L K +A Y L+ AF+ ++G I
Sbjct: 918 VKQLLDRLIIVRGDDRISQEAQENATLLIKAQLRSRLAFKRLALEYSLNRLAFDHVIGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|397135906|gb|AFO11448.1| RNA polymerase I, partial [Yamadazyma philogaea]
Length = 865
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/97 (42%), Positives = 64/97 (65%), Gaps = 5/97 (5%)
Query: 1 MVKSVRNSPAQYSGSARRIIGLNIG-----VRELLEKCVIVAGEDQLSKQANENATLLFQ 55
M + V+N+ + +++ L + V++L K ++V G+ L+K+A ENATLLFQ
Sbjct: 767 MRRIVQNAQQIFHSGRQKVSDLKLDEVVNDVKDLCSKLLVVRGDSPLAKEAQENATLLFQ 826
Query: 56 CLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 92
CLVRS L + V E Y+L+ +FEW+VGEIEN+FQ++
Sbjct: 827 CLVRSRLAARRVIEEYKLNKVSFEWVVGEIENQFQKS 863
>gi|408690992|gb|AFU81868.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012d]
Length = 535
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+K IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQSMLDKMKIVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVLGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|402086759|gb|EJT81657.1| hypothetical protein GGTG_01635 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1765
Score = 84.7 bits (208), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ L + V+V G+D++SK+A+ N+++LF+ +RS L K +A RLS AF+ +VGE
Sbjct: 1007 AVQGFLSRMVVVRGDDEISKEADYNSSILFKAQLRSRLSFKRLAVRERLSKIAFDHVVGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E+R+Q++ +PGEMVG LAAQS+G
Sbjct: 1067 MESRWQRSMISPGEMVGVLAAQSIG 1091
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+L ++ +++ + ++ K+A ++A LF CL+RS L T+ V + YRL+ EAFEW++ +
Sbjct: 990 VRDLQDRLLVLRSKSEIIKKAQDDAVTLFCCLLRSRLATRRVLQEYRLTKEAFEWVLNNV 1049
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F ++ PGEMVG LAAQS+G
Sbjct: 1050 EAQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|408690900|gb|AFU81822.1| RNA polymerase II subunit 1, partial [Fusarium sublunatum]
Length = 535
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+++L K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AFE ++GE
Sbjct: 451 AVQDMLSKMKIVRGGDAISLEADHNATILFKALLRSRLAFKEVVKEHRLNKLAFEHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|408690896|gb|AFU81820.1| RNA polymerase II subunit 1, partial [Fusarium buharicum]
Length = 535
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L K IV G D++S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLSKMKIVRGSDEISLEADHNATILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|157741532|gb|ABV69471.1| RNA polymerase II largest subunit, partial [Placopyrenium bucekii]
Length = 999
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VRQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVLEYGLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF ++ +PGEMVG LAAQS
Sbjct: 978 ETRFTRSTVSPGEMVGVLAAQS 999
>gi|408690948|gb|AFU81846.1| RNA polymerase II subunit 1, partial [Neonectria galligena]
Length = 535
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+ ++E+L K IV G+D +S +A+ NAT+L++ LVRS L K + + +RL+ AF+ ++G
Sbjct: 450 VSIQEMLAKMKIVRGKDPISDEADANATILWKALVRSRLSFKEIVKEHRLNKLAFDHILG 509
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E+ NR+ +A +PGEMVG LAAQS+G
Sbjct: 510 ELLNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741632|gb|ABV69521.1| RNA polymerase II largest subunit, partial [Verruculopsis
poeltiana]
Length = 988
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 907 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 966
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 967 ETRFIKAAASPGEMVGVLAAQS 988
>gi|111278793|gb|ABH09094.1| RNA polymerase II largest subunit [Capronia pilosella]
Length = 1001
Score = 84.3 bits (207), Expect = 7e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V++LL++ +IV GED +S++A +NATLL + +RS L K + + L+ AF+ ++G
Sbjct: 918 AVKQLLDRLIIVRGEDAISREAQDNATLLLKAQLRSRLSYKRLVLEHGLNRLAFDNIIGA 977
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
IE+RF AQ APGEMVG LAAQS+
Sbjct: 978 IESRFIAAQAAPGEMVGVLAAQSI 1001
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 50/121 (41%), Positives = 72/121 (59%), Gaps = 14/121 (11%)
Query: 3 KSVRNSPAQYSGSARRIIGLNIG-----VRELLEKCVIVAG-----EDQLSKQA----NE 48
+ + N+ Q+ R I LN + L+ + I+A ED + QA ++
Sbjct: 974 RMIINAHKQFGIDHRTISDLNPAHVVNSIEGLISRLKIIAQIDASEEDTIYSQAWSETHQ 1033
Query: 49 NATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSL 108
NATLLF L+RSTL +K V E +RL+ +AF W+VGE+E++F + PGEMVGALAAQS+
Sbjct: 1034 NATLLFSILLRSTLSSKRVLEEFRLNEKAFNWMVGEVESKFLLSIVNPGEMVGALAAQSI 1093
Query: 109 G 109
G
Sbjct: 1094 G 1094
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G++EL E +++ G+ ++ ++A +A LF CLVRS L T+ + + Y+L+ +AF+W++
Sbjct: 989 GIKELQEHLLVLRGKSEIIEKAQSDAITLFCCLVRSRLATRRILQEYKLTKQAFQWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E++F ++ PGEMVG LAAQS+G
Sbjct: 1049 VESQFLRSVVHPGEMVGVLAAQSIG 1073
>gi|58395849|gb|AAW72745.1| RNA polymerase II largest subunit [Fomitiporia mediterranea]
Length = 590
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/83 (40%), Positives = 59/83 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++L ++ ++V G+ L+++A ENA+L F+ +R+T + V E + L+ EAF+W++GE+
Sbjct: 508 IQQLADRLIVVRGDXHLTREAAENASLAFKMHLRATFAARPVLEEFHLNREAFDWVLGEV 567
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E +F Q+ PGEM G LAAQS+
Sbjct: 568 ETKFNQSMAHPGEMCGTLAAQSI 590
>gi|408691062|gb|AFU81903.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FIESC 15-a)]
Length = 525
Score = 84.3 bits (207), Expect = 8e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 441 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 500
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 501 LQNRWDRAFVNPGEMVGVLAAQSIG 525
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 41 QLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMV 100
+LS+ A NATLLFQ VR++L +K+V +RL+ +AF WL+ EIENRFQQA GEMV
Sbjct: 967 ELSETAQLNATLLFQVHVRASLASKVVLSEHRLTRKAFTWLLIEIENRFQQALAPAGEMV 1026
Query: 101 GALAAQSLG 109
GA AAQS+G
Sbjct: 1027 GATAAQSIG 1035
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV G D +S++A NATLLF+ +RS L + + +Y L+ AF+ ++G I
Sbjct: 1006 VQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAI 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1066 ESRFARAAANPGEMVGVLAAQSIG 1089
>gi|306413063|gb|ADM86629.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_23a KOD-2010]
gi|306413069|gb|ADM86632.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_22a KOD-2010]
Length = 536
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|306413065|gb|ADM86630.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_25c KOD-2010]
Length = 536
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|306413055|gb|ADM86625.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_18b KOD-2010]
gi|306413059|gb|ADM86627.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_17a KOD-2010]
gi|306413071|gb|ADM86633.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_20a KOD-2010]
gi|306413073|gb|ADM86634.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_16a KOD-2010]
gi|306413077|gb|ADM86636.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_15a KOD-2010]
Length = 536
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|354803954|gb|AER40941.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52774]
Length = 531
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|354803934|gb|AER40931.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52747]
gi|354803960|gb|AER40944.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52784]
gi|354803972|gb|AER40950.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52796]
Length = 531
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|261189983|ref|XP_002621402.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239591638|gb|EEQ74219.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis SLH14081]
gi|239612830|gb|EEQ89817.1| DNA-directed RNA polymerase II largest subunit [Ajellomyces
dermatitidis ER-3]
gi|327351995|gb|EGE80852.1| DNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1746
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+R LL++ ++V G+D +S++A E+ATLLF+ +RS L + + Y L+ AF+ ++G I
Sbjct: 1013 IRALLDRLIVVRGDDVISREAQESATLLFKAQLRSRLAFRRLVVEYSLNRLAFQHVLGAI 1072
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1073 ESRFSKAMANPGEMVGVLAAQSIG 1096
>gi|157741538|gb|ABV69474.1| RNA polymerase II largest subunit, partial [Staurothele areolata]
Length = 999
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157741544|gb|ABV69477.1| RNA polymerase II largest subunit, partial [Staurothele fissa]
Length = 999
Score = 84.3 bits (207), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|157741584|gb|ABV69497.1| RNA polymerase II largest subunit, partial [Verrucaria hydrela]
Length = 999
Score = 84.0 bits (206), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHIVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAMASPGEMVGVLAAQS 999
>gi|408690926|gb|AFU81835.1| RNA polymerase II subunit 1, partial [Sphaerostilbella aureonitens]
Length = 534
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR++L K IV G D +S++A+ +AT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 451 VRDVLAKLRIVRGTDPISQEADRSATILFKALLRSRLAFKEVVKEHRLNKLAFDHVLGEL 510
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ +PGEMVG LAAQS+G
Sbjct: 511 QNRWDRSFVSPGEMVGVLAAQSIG 534
>gi|306413015|gb|ADM86605.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_20a KOD-2010]
Length = 536
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLDHMKIVRGTDPISQEADANATILFKALLRSRLAFKEVVKEHRLNKLAFDHVIGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|354803896|gb|AER40912.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52711]
Length = 531
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVQNMLENMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|408691072|gb|AFU81908.1| RNA polymerase II subunit 1, partial [Fusarium melanochlorum]
Length = 532
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/84 (44%), Positives = 63/84 (75%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+++ + IV G D +S++A+ NAT+LF+ L+RS L K + + +RL+ AF++++GE+
Sbjct: 449 VRDMINQMTIVRGADNISREADSNATILFKALLRSRLAFKEIVKVHRLNKLAFDFIMGEV 508
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
++R+ + +PGEMVG LAAQS+G
Sbjct: 509 QSRWDRCFISPGEMVGVLAAQSIG 532
>gi|408690946|gb|AFU81845.1| RNA polymerase II subunit 1, partial [Neonectria coccinea]
Length = 535
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/86 (46%), Positives = 63/86 (73%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+ ++E+L K IV G+D +S +A+ NAT+L++ LVRS L K + + +RL+ AF+ ++G
Sbjct: 450 VSIQEMLAKMKIVRGKDPISDEADANATILWKALVRSRLSFKEIVKEHRLNKLAFDHILG 509
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E+ NR+ +A +PGEMVG LAAQS+G
Sbjct: 510 ELLNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV G D +S++A NATLLF+ +RS L + + +Y L+ AF+ ++G I
Sbjct: 1006 VQQLLDRLVIVRGNDPISQEAQVNATLLFKAQLRSRLAFRRLVTDYSLNKLAFQHVLGAI 1065
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A PGEMVG LAAQS+G
Sbjct: 1066 ESRFARAAANPGEMVGVLAAQSIG 1089
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ ++V G+D +S +A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1012 VQSLLDRLLVVRGDDPISHEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVLGAI 1071
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A +PGEMVG LAAQS+G
Sbjct: 1072 ESRFAKAAASPGEMVGVLAAQSIG 1095
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 61/85 (71%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V +LL++ V++ G+D LSK+ NATLLF+ +RS L K LV EN L+ AF+ +VGE
Sbjct: 925 VNQLLDRLVVIRGDDILSKEGQHNATLLFKAQLRSRLAFKRLVLEN-SLNRLAFQHVVGE 983
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 984 IESRFLKAAVNPGEMVGVLAAQSIG 1008
>gi|358387637|gb|EHK25231.1| hypothetical protein TRIVIDRAFT_85034 [Trichoderma virens Gv29-8]
Length = 1757
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR ++ K IV G+D +SK+A+ +AT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 1004 VRNVISKLKIVRGDDPISKEADASATILFKALLRSRLAFKEVVKEHRLNKLAFDHVLGEL 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ PGEMVG LAAQS+G
Sbjct: 1064 QNRWDRSFVNPGEMVGVLAAQSIG 1087
>gi|306413095|gb|ADM86645.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_8a KOD-2010]
Length = 536
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 63/85 (74%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+K +V G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQSMLDKMKVVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVLGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 69/119 (57%), Gaps = 14/119 (11%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLS---------KQANENA 50
+ N+ ++ RR+ LN + + +++ + I+A D + NA
Sbjct: 975 ITNAQKLFNIDIRRVSDLNPAFVVLEIEKVVSRLKIIATADTTEDDESFNRAWSEVYHNA 1034
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
TLLF LVRST+ +K V +RL+ +AF W+VGEIE++F QA PGEMVGALAAQS+G
Sbjct: 1035 TLLFSILVRSTMASKRVLTEFRLTEKAFLWVVGEIESKFLQALAHPGEMVGALAAQSIG 1093
>gi|226876257|gb|ACO89449.1| RNA polymerase II largest subunit, partial [Eremascus albus]
Length = 994
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/81 (48%), Positives = 58/81 (71%)
Query: 27 RELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIE 86
R+LL++ V+V G+D +S++A E+AT+LF+ +RS L + + Y L+ AF+ ++G IE
Sbjct: 914 RDLLDRLVVVRGDDTISREAQESATMLFKAQLRSRLAFRRLVVEYSLNKLAFQHVLGAIE 973
Query: 87 NRFQQAQCAPGEMVGALAAQS 107
NRF +A PGEMVG LAAQS
Sbjct: 974 NRFSRAMANPGEMVGVLAAQS 994
>gi|85111774|ref|XP_964097.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
gi|28925863|gb|EAA34861.1| DNA-directed RNA polymerase II largest subunit [Neurospora crassa
OR74A]
Length = 1752
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/85 (44%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L++ ++V G+D +SK+A+ NAT+LF+ +RS L K +A R++ AF ++GE
Sbjct: 1007 AVKAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGE 1066
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ENR+ ++ +PGEMVG LAAQS+G
Sbjct: 1067 LENRWSRSMVSPGEMVGVLAAQSIG 1091
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V++LL++ V+V G D+LS++A NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 835 VQDLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMEN-SLNKLAFQHVLGE 893
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 894 IESRFCRAAVNPGEMVGVLAAQSIG 918
>gi|336463398|gb|EGO51638.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350297387|gb|EGZ78364.1| DNA-directed RNA polymerase II largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1761
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ +L++ ++V G+D +SK+A+ NAT+LF+ +RS L K +A R++ AF ++GE+
Sbjct: 1008 VKAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGEL 1067
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENR+ ++ +PGEMVG LAAQS+G
Sbjct: 1068 ENRWSRSMVSPGEMVGVLAAQSIG 1091
>gi|336276273|ref|XP_003352890.1| hypothetical protein SMAC_05005 [Sordaria macrospora k-hell]
gi|380093009|emb|CCC09246.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1761
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ +L++ ++V G+D +SK+A+ NAT+LF+ +RS L K +A R++ AF ++GE+
Sbjct: 1008 VKAMLDRMIVVRGDDPISKEADYNATILFKAQLRSRLAFKRLAVQDRINKLAFNHILGEL 1067
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENR+ ++ +PGEMVG LAAQS+G
Sbjct: 1068 ENRWSRSMVSPGEMVGVLAAQSIG 1091
>gi|408690998|gb|AFU81871.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012g]
Length = 535
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR++L IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF++++GE
Sbjct: 451 AVRDMLNNMKIVRGTDPISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDYILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|306413029|gb|ADM86612.1| DNA-directed RNA polymerase II largest subunit [Fusarium concolor]
Length = 536
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL+ IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVRDLLDNMKIVRGTDPISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|157841482|gb|ABV83207.1| RNA polymerase 2 [Choriorhabditis dudichi]
Length = 252
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/62 (59%), Positives = 52/62 (83%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +IV+GED++SKQA NATLL L+RSTLC+K +A ++L++EAFEWL+GE
Sbjct: 190 GVKELSKKLIIVSGEDKISKQAQYNATLLMNILIRSTLCSKKMATTHKLNAEAFEWLLGE 249
Query: 85 IE 86
+E
Sbjct: 250 VE 251
>gi|408691044|gb|AFU81894.1| RNA polymerase II subunit 1, partial [Microcera sp. NRRL 26790]
Length = 532
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 62/84 (73%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE+
Sbjct: 449 VQALLDKVKIVQGTDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHIIGEL 508
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+N++++A +PGEMVG LAAQS+G
Sbjct: 509 QNKWERAFVSPGEMVGVLAAQSIG 532
>gi|408690908|gb|AFU81826.1| RNA polymerase II subunit 1, partial [Fusarium concolor]
Length = 535
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL+ IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVRDLLDNMKIVRGTDPISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|354803978|gb|AER40953.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
concolor]
Length = 531
Score = 84.0 bits (206), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR+LL+ IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVRDLLDNMKIVRGTDPISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|157741510|gb|ABV69460.1| RNA polymerase II largest subunit, partial [Placidiopsis
cinerascens]
Length = 999
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ V+V GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLVVVRGEDRISLEAQENATLLLKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAMASPGEMVGVLAAQS 999
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V ELL++ VIV G+D LS++A NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 930 VNELLDRLVIVRGDDPLSQEAQHNATLLFKAQLRSRLAFKRLVLEN-SLNKLAFQHVLGE 988
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F +A PGEMVG LAAQS+G
Sbjct: 989 IESKFCRAAVNPGEMVGVLAAQSIG 1013
>gi|242778248|ref|XP_002479200.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722819|gb|EED22237.1| DNA-dependent RNA polymerase II largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1755
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ VIV G+D +SK+A +ATLLF+ +RS L K + Y ++ AF ++G I
Sbjct: 1011 VQALLDRLVIVRGDDVISKEAQTSATLLFKAQLRSRLAFKRLVTQYSMNKLAFNHVLGAI 1070
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF +AQ PGEMVG LAAQS+G
Sbjct: 1071 EMRFARAQANPGEMVGVLAAQSIG 1094
>gi|157741602|gb|ABV69506.1| RNA polymerase II largest subunit, partial [Verrucaria polysticta]
Length = 999
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 43/82 (52%), Positives = 57/82 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED +S +A NATLL + L+RS L K + Y L+ AF+ +VG I
Sbjct: 918 VQQLLDRLVIVRGEDPISLEAQNNATLLIKALLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAAASPGEMVGVLAAQS 999
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae DBVPG#7215]
Length = 1743
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GVR+L + +++ G + K+A ENA LF LVRS L T+ V YRL+ + F+W++
Sbjct: 988 LGVRKLQDNLLVLRGSSNILKEAQENAVTLFCSLVRSRLATRRVLTEYRLTKQTFQWVLN 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSIVHPGEMVGVLAAQSIG 1073
>gi|385302705|gb|EIF46824.1| rna polymerase ii largest subunit, partial [Dekkera bruxellensis
AWRI1499]
Length = 1699
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 54/79 (68%)
Query: 31 EKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ 90
+K +V G QA +NAT LFQCLVRS L +K V +RL+ +AF+W++G +E +F
Sbjct: 987 DKLPVVRGSGGCLDQAQQNATYLFQCLVRSRLASKRVLHEFRLNRDAFDWVLGMVEQQFA 1046
Query: 91 QAQCAPGEMVGALAAQSLG 109
++ PGEMVG +AAQS+G
Sbjct: 1047 KSLVNPGEMVGVIAAQSIG 1065
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V +LL++ VIV GED LS++A NAT+LF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 925 VNDLLDRLVIVRGEDSLSQEAQHNATILFKAQLRSRLVFKRLVLEN-SLNKLAFQHVLGE 983
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F +A PGEMVG LAAQS+G
Sbjct: 984 IESKFCRAAVNPGEMVGVLAAQSIG 1008
>gi|354803878|gb|AER40903.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39716]
gi|354803880|gb|AER40904.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39862]
gi|354803882|gb|AER40905.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39924]
gi|354803884|gb|AER40906.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39931]
Length = 532
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE
Sbjct: 448 AVQALLDKVKIVQGSDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHILGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|408690960|gb|AFU81852.1| RNA polymerase II subunit 1, partial [Fusarium equiseti]
Length = 535
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLENMKIVRGTDEISVEADKNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|306413117|gb|ADM86656.1| DNA-directed RNA polymerase II largest subunit [Fusarium equiseti]
Length = 536
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISVEADKNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|354803886|gb|AER40907.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 39955]
Length = 532
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE
Sbjct: 448 AVQALLDKVKIVQGSDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHILGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|408691080|gb|AFU81912.1| RNA polymerase II subunit 1, partial [Fusarium falciforme]
Length = 535
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLDNMKIVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|306413093|gb|ADM86644.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_3_4a KOD-2010]
Length = 536
Score = 83.6 bits (205), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLDNMKIVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|302927295|ref|XP_003054466.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735407|gb|EEU48753.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 1750
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 1003 VQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 1062
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 1063 QNRWDRAFVSPGEMVGVLAAQSIG 1086
>gi|38232409|gb|AAR15040.1| RNA polymerase II largest subunit [Echiniscus viridissimus]
Length = 95
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Query: 15 SARRIIGLNIGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLS 74
S RR++ VR L + V+V G D LS +A NAT L +RS LC+K+VAE++RL+
Sbjct: 17 SPRRVVE---EVRNLCSRLVVVKGTDYLSNEAQANATTLLHAFIRSMLCSKIVAEDHRLT 73
Query: 75 SEAFEWLVGEIENRFQQAQCAP 96
S+AF+WL+GE E+RF+ A P
Sbjct: 74 SDAFDWLIGETESRFKAAVAEP 95
>gi|354803838|gb|AER40883.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22102]
Length = 532
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE
Sbjct: 448 AVQALLDKVKIVQGTDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHILGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|345565425|gb|EGX48374.1| hypothetical protein AOL_s00080g3 [Arthrobotrys oligospora ATCC
24927]
Length = 1760
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 58/84 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ V++ G D +S +A NATLLF+ ++ L K + YRL+ A +W++GEI
Sbjct: 1023 IKQLLDELVVIRGSDPISIEAQYNATLLFRSHLQGRLAFKRLVLEYRLTKVALDWVIGEI 1082
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ RF +A PGEMVG LAAQS+G
Sbjct: 1083 KARFAKAAANPGEMVGVLAAQSIG 1106
>gi|157741560|gb|ABV69485.1| RNA polymerase II largest subunit, partial [Hydropunctaria
adriatica]
Length = 988
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ V+V GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 907 VKQLLDRLVVVRGEDRISVEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 966
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 967 ETRFIKAAASPGEMVGVLAAQS 988
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/70 (55%), Positives = 52/70 (74%)
Query: 40 DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEM 99
D L K+A ENATLLFQ +RS L K + + +RL+ +AF WL+GE+ENRF + APGE
Sbjct: 952 DPLMKEAQENATLLFQIHMRSMLACKKLIQLHRLTFKAFLWLLGEVENRFMMCRVAPGEN 1011
Query: 100 VGALAAQSLG 109
+GA+AAQS+G
Sbjct: 1012 IGAIAAQSIG 1021
>gi|408690988|gb|AFU81866.1| RNA polymerase II subunit 1, partial [Fusarium phaseoli]
gi|408691058|gb|AFU81901.1| RNA polymerase II subunit 1, partial [Fusarium virguliforme]
Length = 535
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+ IV G D +S++A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNLLDNMRIVRGTDPISQEADANASILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|428180807|gb|EKX49673.1| Rpb1, RNA polymerase II largest subunit [Guillardia theta CCMP2712]
Length = 1473
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 2/87 (2%)
Query: 25 GVRELLE--KCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLV 82
GVR+L E K + GED +S +A NAT LF ++RS K V +RL+ +AF+W++
Sbjct: 975 GVRDLSERLKVALFPGEDNISIEARNNATHLFNIILRSQFAVKKVMAGHRLNKKAFDWIL 1034
Query: 83 GEIENRFQQAQCAPGEMVGALAAQSLG 109
GE+E++F++A PGE VG +A+QSLG
Sbjct: 1035 GEVESKFRRAIVNPGESVGCIASQSLG 1061
>gi|157741562|gb|ABV69486.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ ++V GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLDRLIVVRGEDRISLEAQENATLLMKAQLRSRLAFKRLVVEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIRATASPGEMVGVLAAQS 999
>gi|145351142|ref|XP_001419944.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580177|gb|ABO98237.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1646
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V ELL K ++V G D LS +A N T+LF VR+ L K V + ++L+ F+W++GEI
Sbjct: 986 VAELLPKLIVVPGTDPLSVEAQRNGTMLFFAHVRANLAAKRVLKEHKLTRAGFDWVIGEI 1045
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF+ A PG+ +G +AAQS+G
Sbjct: 1046 ESRFKMALAPPGDGIGTVAAQSIG 1069
>gi|157741558|gb|ABV69484.1| RNA polymerase II largest subunit, partial [Thelidium pyrenophorum]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 IKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|157741556|gb|ABV69483.1| RNA polymerase II largest subunit, partial [Thelidium papulare]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 IKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|157741564|gb|ABV69487.1| RNA polymerase II largest subunit, partial [Placopyrenium canellum]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ ++V GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLDRLIVVRGEDRISLEAQENATLLMKAQLRSRLAFKRLVVEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIRATASPGEMVGVLAAQS 999
>gi|157741514|gb|ABV69462.1| RNA polymerase II largest subunit, partial [Verrucaria chiloensis]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LLE+ VIV GED++S++A +NATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLERLVIVRGEDKISREAQDNATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E R +A +PGEMVG LAAQS
Sbjct: 978 ETRSIKATASPGEMVGVLAAQS 999
>gi|157741536|gb|ABV69473.1| RNA polymerase II largest subunit, partial [Polyblastia
viridescens]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 IKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|397135952|gb|AFO11471.1| RNA polymerase I, partial [Yarrowia lipolytica]
Length = 870
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/95 (44%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 3 KSVRNSPAQYSGSARRIIGLNI-----GVRELLEKCVIVAGEDQLSKQANENATLLFQCL 57
+ V+NS ++ ++ L I GV+ L ++ IV G+ L+K+A ENAT+LFQCL
Sbjct: 774 RVVQNSQRIFNVDKSKVSDLTIPEIVEGVQSLCKRLTIVRGDSSLAKEAQENATMLFQCL 833
Query: 58 VRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQA 92
VRS TK V E YRL+ AFEW++GEIE +F ++
Sbjct: 834 VRSRFPTKRVIEEYRLNRAAFEWVMGEIETQFAKS 868
>gi|397135904|gb|AFO11447.1| RNA polymerase I, partial [Meyerozyma guilliermondii]
Length = 872
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/68 (52%), Positives = 53/68 (77%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +++ G+ L K++ ENATLLFQCLVRS L T+ V E +RL+ +FEW++GE
Sbjct: 803 GVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWVMGE 862
Query: 85 IENRFQQA 92
IE +FQ++
Sbjct: 863 IETQFQKS 870
>gi|157741554|gb|ABV69482.1| RNA polymerase II largest subunit, partial [Thelidium incavatum]
Length = 999
Score = 83.2 bits (204), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 IKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|354803876|gb|AER40902.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 36087]
Length = 528
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ENAT+LF+ L+RS L K + +RL+ AF +VGE
Sbjct: 444 AVQALLDKVKIVQGSDPISIEADENATMLFKALLRSRLAFKEIVMVHRLNRLAFNHIVGE 503
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+++++++A +PGEMVG LAAQS+G
Sbjct: 504 LQSKWERAFVSPGEMVGVLAAQSIG 528
>gi|157741576|gb|ABV69493.1| RNA polymerase II largest subunit, partial [Verrucaria fuscula]
Length = 999
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYCLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFTKAIASPGEMVGVLAAQS 999
>gi|408691042|gb|AFU81893.1| RNA polymerase II subunit 1, partial [Fusarium sp. (FIESC 26-a)]
Length = 535
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D++S +A++NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLQNMKIVRGTDEISVEADQNASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|408690944|gb|AFU81844.1| RNA polymerase II subunit 1, partial [Microcera larvarum]
Length = 532
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE
Sbjct: 448 AVQALLDKVKIVQGTDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHILGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|306413081|gb|ADM86638.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_5a KOD-2010]
Length = 536
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGNDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|408691090|gb|AFU81917.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012c]
Length = 535
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
++ LL IV G D +S++A+ NA++LF+ L+RS L K V + +RL+ AF+ +VGE
Sbjct: 451 AMQNLLSNMKIVRGNDAISQEADTNASILFKALLRSRLAFKEVVKEHRLNKLAFDHVVGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741580|gb|ABV69495.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 IKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|408690888|gb|AFU81816.1| RNA polymerase II subunit 1, partial [Cylindrocarpon sp. NRRL 6149]
Length = 535
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/86 (45%), Positives = 63/86 (73%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+ ++++L K IV G D +S +A+ NAT+L++ LVRS L K + +++RL+ AF+ ++G
Sbjct: 450 VSIQDMLNKMKIVRGSDPISLEADANATILWKALVRSRLSFKEIVKDHRLNKLAFDHILG 509
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
E+ NR+ +A +PGEMVG LAAQS+G
Sbjct: 510 ELLNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741582|gb|ABV69496.1| RNA polymerase II largest subunit, partial [Verrucaria
hochstetteri]
Length = 999
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 IKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|408690922|gb|AFU81833.1| RNA polymerase II subunit 1, partial [Microcera coccophila]
Length = 532
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT++F+ L+RS L K V + +RL+ AF ++GE
Sbjct: 448 AVQALLDKVKIVQGTDPISIEADANATIIFKALLRSRLAFKEVVKVHRLNKLAFNHIIGE 507
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 508 LQNKWERAFVSPGEMVGVLAAQSIG 532
>gi|327242125|gb|AEA40841.1| RNA polymerase II largest subunit [Tritrichomonas foetus]
Length = 1293
Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL+++ VIV GED LS++A +NATLL + + S L +K V +RL+ +A +++GEI
Sbjct: 937 VEELVDQLVIVKGEDALSREAQDNATLLLRIHIFSNLASKPVIFQHRLTEQALIFVLGEI 996
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+ RF Q +PGEMVG +A QS+G
Sbjct: 997 KTRFVQTIVSPGEMVGTIAGQSIG 1020
>gi|58395824|gb|AAW72740.1| RNA polymerase II largest subunit [Gautieria otthii]
Length = 597
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 54/83 (65%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR L + ++V G+D +S + NATLLF +RST + V E + L+ EAFEW++GE+
Sbjct: 515 VRSLGSRLIVVRGDDPISCEMQANATLLFGMHLRSTFAARPVLEEFHLNREAFEWVLGEV 574
Query: 86 ENRFQQAQCAPGEMVGALAAQSL 108
E +F + PGEM G LAAQS+
Sbjct: 575 ETKFNHSLVNPGEMCGTLAAQSI 597
>gi|306413039|gb|ADM86617.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_3b KOD-2010]
Length = 528
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 444 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 503
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 504 LQNRWDRAFVNPGEMVGVLAAQSIG 528
>gi|57634552|gb|AAW52570.1| RNA polymerase II largest subunit [Marasmius alliaceus]
Length = 590
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 54/84 (64%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ L ++ V+V G D LS + NATL F +R+T + V E + L+ EAFEW++GE
Sbjct: 507 AVKALCQRLVVVRGNDALSVEGQANATLRFHMHLRATFGCRRVLERFHLNKEAFEWVMGE 566
Query: 85 IENRFQQAQCAPGEMVGALAAQSL 108
+E +F Q+ PGEM G LAAQS+
Sbjct: 567 VEAKFNQSLANPGEMCGTLAAQSI 590
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS 8797]
Length = 1721
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V EL K +++ G+ ++ ++A +A LF CLVRS L T+ V + YRL+ EAF W++ I
Sbjct: 989 VNELQSKLLVLRGKSEIIERAQTDAVTLFCCLVRSRLATRRVLKEYRLTKEAFNWVLNNI 1048
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E +F ++ PGEMVG LAAQS+G
Sbjct: 1049 EAQFLRSVVHPGEMVGVLAAQSIG 1072
>gi|354803830|gb|AER40879.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 20475]
gi|354803832|gb|AER40880.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 22170]
Length = 528
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF ++GE
Sbjct: 444 AVQALLDKVKIVQGTDPISLEADANATILFKALLRSRLAFKEVVKVHRLNKLAFNHILGE 503
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 504 LQNKWERAFVSPGEMVGVLAAQSIG 528
>gi|306413131|gb|ADM86663.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_34a KOD-2010]
Length = 529
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ +L+ IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 446 VQNMLDHMKIVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 505
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
NR+ +A +PGEMVG LAAQS+G
Sbjct: 506 RNRWDRAFVSPGEMVGVLAAQSIG 529
>gi|342878262|gb|EGU79617.1| hypothetical protein FOXB_09900 [Fusarium oxysporum Fo5176]
Length = 1751
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+ IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 1004 AVQNLLDSMKIVRGTDEISIEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 1064 LQNRWDRAFVNPGEMVGVLAAQSIG 1088
>gi|157741592|gb|ABV69501.1| RNA polymerase II largest subunit, partial [Verrucaria marmorea]
Length = 999
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LL++ +IV GED++S +A ENATLL + +RS L K + + L+ AF+ ++G +
Sbjct: 918 VRQLLDRLIIVRGEDKISLEAQENATLLIKAQLRSRLAFKRLVMEHSLNRLAFDHVIGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|408691094|gb|AFU81919.1| RNA polymerase II subunit 1, partial [Fusarium sp. KOD-2012h]
gi|409694247|gb|AFV36996.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694249|gb|AFV36997.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694251|gb|AFV36998.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694253|gb|AFV36999.1| RPB1, partial [Fusarium sp. KOD-2012h]
gi|409694255|gb|AFV37000.1| RPB1, partial [Fusarium sp. KOD-2012h]
Length = 535
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
VR++L+ IV G D +S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVRDMLDNMRIVRGTDPISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|408691084|gb|AFU81914.1| RNA polymerase II subunit 1, partial [Nectria haematococca mpVI]
gi|409694243|gb|AFV36994.1| RPB1, partial [Fusarium solani f. mori]
Length = 535
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 452 VQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 511
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 QNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|354803952|gb|AER40940.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
gi|354803966|gb|AER40947.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 448 VQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 507
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 508 QNRWDRAFVSPGEMVGVLAAQSIG 531
>gi|306413115|gb|ADM86655.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_13a KOD-2010]
Length = 536
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|306413037|gb|ADM86616.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_15a KOD-2010]
Length = 536
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 453 VQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 512
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 513 QNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 52/69 (75%)
Query: 41 QLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMV 100
QL+ +A ENATLL+ +R+ L +K++ + YRL +AF L+GEIENRF A+C PGEM+
Sbjct: 1023 QLAVEAQENATLLWSIHIRAFLASKVILKEYRLDKKAFMHLLGEIENRFLHAKCPPGEMI 1082
Query: 101 GALAAQSLG 109
GA+A QS+G
Sbjct: 1083 GAVAPQSIG 1091
>gi|306413103|gb|ADM86649.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_7a KOD-2010]
Length = 536
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/84 (48%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE+
Sbjct: 453 VQNLLDHMKIVRGTDPISVEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGEL 512
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 513 QNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|306413099|gb|ADM86647.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_6a KOD-2010]
Length = 536
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNLLDHMKIVRGTDPISLEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|354803942|gb|AER40935.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 52754]
Length = 528
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/84 (47%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ L+ IV G D +S +A+ NAT+LF+ L+RS L K + +RLS AF++++GE+
Sbjct: 445 VQSTLDNMKIVRGNDPISIEADANATVLFKALLRSRLAFKELIREHRLSKVAFDYVIGEL 504
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+++A PGEMVG LAAQS+G
Sbjct: 505 QNRWERAFVNPGEMVGVLAAQSIG 528
>gi|157741598|gb|ABV69504.1| RNA polymerase II largest subunit, partial [Verrucaria muralis]
Length = 999
Score = 82.8 bits (203), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ +IV GED++S +A +NATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VKQLLDRLIIVRGEDRISLEAQDNATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKATASPGEMVGVLAAQS 999
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ V+V G+D+LS++A NATLL + +RS L K +A + RL+ AF+ ++GEI
Sbjct: 1004 VQGLLDRLVVVRGKDELSEEAQLNATLLIKAQLRSRLAFKRIACHMRLNRLAFDHVLGEI 1063
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF ++ PGEMVG LAAQS+G
Sbjct: 1064 ETRFIKSLVNPGEMVGVLAAQSIG 1087
>gi|354803932|gb|AER40930.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
solani]
Length = 531
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+ IV G D +S +A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVQNLLDHMKIVRGTDPISLEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVSPGEMVGVLAAQSIG 531
>gi|157741486|gb|ABV69448.1| RNA polymerase II largest subunit, partial [Clavascidium umbrinum]
Length = 999
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 55/82 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
VR+LLE+ +V G D +S +A ENATLL + +RS L K + Y L+ AF+ +VG I
Sbjct: 918 VRQLLERLTVVRGNDSISVEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAI 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFTKAIASPGEMVGVLAAQS 999
>gi|306413097|gb|ADM86646.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FSSC_5a KOD-2010]
Length = 536
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D +S++A+ NAT+LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLDHMKIVRGTDPISQEADANATILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+ NR+ +A +PGEMVG LAAQS+G
Sbjct: 512 LRNRWDRAFVSPGEMVGVLAAQSIG 536
>gi|354803820|gb|AER40874.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13854]
gi|354803824|gb|AER40876.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 13962]
Length = 528
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ LL+K IV G D +S +A+ NAT++F+ L+RS L K V + +RL+ AF ++GE
Sbjct: 444 AVQALLDKVKIVQGTDPISIEADANATIIFKALLRSRLAFKEVVKVHRLNKLAFNHIIGE 503
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++N++++A +PGEMVG LAAQS+G
Sbjct: 504 LQNKWERAFVSPGEMVGVLAAQSIG 528
>gi|408690932|gb|AFU81838.1| RNA polymerase II subunit 1, partial [Fusarium lacertarum]
Length = 535
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|408690902|gb|AFU81823.1| RNA polymerase II subunit 1, partial [Fusarium equiseti]
Length = 535
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVNPGEMVGVLAAQSIG 535
>gi|354803866|gb|AER40897.1| DNA-directed RNA polymerase II largest subunit, partial [Fusarium
sp. NRRL 25124]
Length = 531
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 447 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 506
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 507 LQNRWDRAFVNPGEMVGVLAAQSIG 531
>gi|306413013|gb|ADM86604.1| DNA-directed RNA polymerase II largest subunit [Fusarium
lacertarum]
gi|306413121|gb|ADM86658.1| DNA-directed RNA polymerase II largest subunit [Fusarium sp.
FIESC_1a KOD-2010]
Length = 536
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 61/85 (71%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +LE IV G D++S +A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 452 AVQNMLENMKIVRGTDEISLEADANASILFKALLRSRLAFKEVVKEHRLNKLAFDHILGE 511
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A PGEMVG LAAQS+G
Sbjct: 512 LQNRWDRAFVNPGEMVGVLAAQSIG 536
>gi|413915242|gb|AFW21483.1| RNA polymerase II largest subunit [Claviceps fusiformis]
Length = 1761
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/84 (45%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL +V G D +S +A+ NAT+LF+ L+RS L K + + +RL+ AF+ ++GE+
Sbjct: 1007 IQKLLNNLTVVRGSDPISIEADTNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGEL 1066
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ +A +PGEMVG LAAQS+G
Sbjct: 1067 QNRWDRAFVSPGEMVGVLAAQSIG 1090
>gi|157741548|gb|ABV69479.1| RNA polymerase II largest subunit, partial [Staurothele immersa]
Length = 999
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/82 (48%), Positives = 58/82 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
+++LL++ +IV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 IKQLLDRLIIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAIASPGEMVGVLAAQS 999
>gi|110669643|gb|ABG81916.1| RNA polymerase II largest subunit, partial [Agonimia sp. AFTOL 684]
Length = 1023
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 57/84 (67%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL+ VIV G D++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 933 VKRLLDSLVIVRGGDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 992
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E RF +A +PGEMVG LAAQS+G
Sbjct: 993 ETRFIKATASPGEMVGVLAAQSIG 1016
>gi|263754|gb|AAB24966.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 902
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLSKQANEN---------A 50
+ N+ ++ RR+ LN + + +L+ + I+A D N N A
Sbjct: 149 INNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAEVYFNA 208
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
T+LF LVRST +K V +RL+ +AF W+ GEIE++F QA PGEMVGALAAQS+G
Sbjct: 209 TMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIG 267
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/70 (50%), Positives = 53/70 (75%)
Query: 40 DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEM 99
D+ + ++NAT+LF L+RST ++ V + +RL+S+AFEW+ GE+E++F + PGEM
Sbjct: 1003 DKAWNETHQNATMLFAILLRSTFASRRVLDEFRLTSKAFEWVCGEVESKFMTSLANPGEM 1062
Query: 100 VGALAAQSLG 109
VGALAAQS+G
Sbjct: 1063 VGALAAQSIG 1072
>gi|157741594|gb|ABV69502.1| RNA polymerase II largest subunit, partial [Hydropunctaria maura]
Length = 999
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/82 (50%), Positives = 57/82 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ V+V GED +S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLVVVRGEDPISVEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A +PGEMVG LAAQS
Sbjct: 978 ETRFIKAAASPGEMVGVLAAQS 999
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1; Short=RNA
polymerase II subunit B1; AltName: Full=DNA-directed RNA
polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLSKQANEN---------A 50
+ N+ ++ RR+ LN + + +L+ + I+A D N N A
Sbjct: 974 INNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAEVYFNA 1033
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
T+LF LVRST +K V +RL+ +AF W+ GEIE++F QA PGEMVGALAAQS+G
Sbjct: 1034 TMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIG 1092
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V LL++ I+ G+D L+++A+ NATLL + L RS L K V +LS AF+ ++G+I
Sbjct: 1008 VAALLDRLKIIRGDDALTREADVNATLLCKALFRSRLAFKRVVNEDKLSKLAFDNILGDI 1067
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
ENRF +A +PGEMVG LAAQS+G
Sbjct: 1068 ENRFLRALVSPGEMVGVLAAQSIG 1091
>gi|409694241|gb|AFV36993.1| RPB1, partial [Fusarium solani f. xanthoxyli]
Length = 535
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L+ IV G D +S++A+ NA++LF+ L+RS L K V + +RL+ AF+ ++GE
Sbjct: 451 AVQNMLDHMKIVRGSDPISQEADANASILFKGLLRSRLAFKEVVKEHRLNKLAFDHVIGE 510
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
++NR+ +A +PGEMVG LAAQS+G
Sbjct: 511 LQNRWDRAFVSPGEMVGVLAAQSIG 535
>gi|157741534|gb|ABV69472.1| RNA polymerase II largest subunit, partial [Polyblastia cupularis]
Length = 999
Score = 82.4 bits (202), Expect = 3e-14, Method: Composition-based stats.
Identities = 42/82 (51%), Positives = 57/82 (69%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V++LL++ VIV GED++S +A ENATLL + +RS L K + Y L+ AF+ +VG +
Sbjct: 918 VKQLLDRLVIVRGEDRISLEAQENATLLIKAQLRSRLAFKRLVMEYSLNRLAFDHVVGAV 977
Query: 86 ENRFQQAQCAPGEMVGALAAQS 107
E RF +A PGEMVG LAAQS
Sbjct: 978 ETRFIKAIANPGEMVGVLAAQS 999
>gi|413915236|gb|AFW21480.1| RNA polymerase II largest subunit [Periglandula ipomoeae]
Length = 1760
Score = 82.4 bits (202), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 61/84 (72%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL + IV G D +S +A+ NAT+LF+ L+RS L K + + +RL+ AF+ ++GE+
Sbjct: 1007 VQNLLSELKIVRGSDSISVEADTNATILFKALIRSRLAFKEIVKVHRLNKLAFDHVLGEL 1066
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ +PGEMVG LAAQS+G
Sbjct: 1067 QNRWDRSFVSPGEMVGVLAAQSIG 1090
>gi|413915238|gb|AFW21481.1| RNA polymerase II largest subunit [Aciculosporium take]
Length = 1761
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 60/84 (71%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL +V G D +S +A+ NAT+LF+ L+RS L K + + +RLS AF+ ++GE+
Sbjct: 1007 VQNLLSNLKVVRGSDPISIEADNNATILFKALIRSRLAFKEIVKVHRLSKLAFDHVLGEL 1066
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
+NR+ ++ +PGEMVG LAAQS+G
Sbjct: 1067 QNRWDRSFVSPGEMVGVLAAQSIG 1090
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 62/85 (72%), Gaps = 2/85 (2%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTK-LVAENYRLSSEAFEWLVGE 84
V+ LL++ V+V G D+LS++A NATLLF+ +RS L K LV EN L+ AF+ ++GE
Sbjct: 926 VQGLLDRLVVVRGTDKLSEEAQHNATLLFKIQLRSRLAFKRLVMEN-SLNKLAFQHVLGE 984
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF +A PGEMVG LAAQS+G
Sbjct: 985 IESRFCRAAVNPGEMVGVLAAQSIG 1009
>gi|429851276|gb|ELA26479.1| DNA-dependent RNA polymerase ii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1754
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 60/85 (70%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L + IV G D++SK+A+ +AT+LF+ +RS L K +A RL+ AFE ++GE
Sbjct: 1004 AVQAMLNRMTIVRGNDEISKEADRSATILFKAQIRSRLAFKRIACQQRLNKMAFEHVLGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E R+ +A +PGEMVG +AAQS+G
Sbjct: 1064 LEARWDRAFVSPGEMVGVIAAQSIG 1088
>gi|310789907|gb|EFQ25440.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1753
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/85 (45%), Positives = 62/85 (72%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V+ +L++ IV G D++SK+A+ +AT+LF+ +RS L K +A + RL+ AFE ++GE
Sbjct: 1004 AVQAMLKRMTIVRGNDEISKEADYSATILFKAQIRSRLAFKRIACHQRLNKMAFEHVLGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E R+ +A +PGEMVG +AAQS+G
Sbjct: 1064 LEARWDRAFVSPGEMVGVIAAQSIG 1088
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 82.0 bits (201), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/84 (46%), Positives = 59/84 (70%)
Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEI 85
V+ LL++ +IV G+D +S++A ENATLLF+ +RS L + + Y ++ AF+ ++G I
Sbjct: 1010 VQALLDRLLIVRGDDPISQEAQENATLLFKAQLRSRLAFRRLVTEYSMNKLAFQHVIGAI 1069
Query: 86 ENRFQQAQCAPGEMVGALAAQSLG 109
E+RF +A GEMVG LAAQS+G
Sbjct: 1070 ESRFAKANAPAGEMVGVLAAQSIG 1093
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,594,231,245
Number of Sequences: 23463169
Number of extensions: 49507004
Number of successful extensions: 116225
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 114356
Number of HSP's gapped (non-prelim): 1886
length of query: 117
length of database: 8,064,228,071
effective HSP length: 84
effective length of query: 33
effective length of database: 6,093,321,875
effective search space: 201079621875
effective search space used: 201079621875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 69 (31.2 bits)