BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5725
(117 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 151 bits (382), Expect = 1e-36, Method: Composition-based stats.
Identities = 69/85 (81%), Positives = 77/85 (90%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+ LLE+CVIV G D++SKQANENATLLFQCL+RSTLCTK V+E +RLS+EAFEWLVGE
Sbjct: 1004 GVKTLLERCVIVTGNDRISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGE 1063
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQAQ PGEMVGALAAQSLG
Sbjct: 1064 IETRFQQAQANPGEMVGALAAQSLG 1088
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 120 bits (301), Expect = 3e-27, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 70/85 (82%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K VIV G+D LS+QA ENATLLF +RSTLC++ +AE +RLS EAF+WL+GE
Sbjct: 1012 GVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGE 1071
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE++F QA PGEMVGALAAQSLG
Sbjct: 1072 IESKFNQAIAHPGEMVGALAAQSLG 1096
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 119 bits (297), Expect = 7e-27, Method: Composition-based stats.
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + +L+SEAF+WL+GE
Sbjct: 1006 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RFQQA PGEMVGALAAQSLG
Sbjct: 1066 IESRFQQAIAQPGEMVGALAAQSLG 1090
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 118 bits (295), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVREL +K +IV+G D++SKQA NATLL L+RSTLCTK + + +L++EAF+WL+GE
Sbjct: 1006 GVRELSKKLIIVSGNDEISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGE 1065
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE RFQQA PGEMVGALAAQSLG
Sbjct: 1066 IETRFQQAIAQPGEMVGALAAQSLG 1090
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
V +L E+ ++V G+D LS +A +NATL F L+RSTL +K V E Y+LS EAFEW++GE
Sbjct: 1009 AVDKLQERLLVVPGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGE 1068
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE+RF Q+ APGEM+G +AAQS+G
Sbjct: 1069 IESRFLQSLVAPGEMIGCVAAQSIG 1093
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 104 bits (259), Expect = 2e-22, Method: Composition-based stats.
Identities = 47/85 (55%), Positives = 65/85 (76%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GV+EL +K +++ G+ L K++ ENATLLFQCLVRS L T+ V E +RL+ +FEW +GE
Sbjct: 822 GVKELCKKLLVLRGDSPLVKESQENATLLFQCLVRSRLATRRVIEEFRLNRMSFEWAMGE 881
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +FQ++ PGEMVG +AAQS+G
Sbjct: 882 IETQFQKSLVHPGEMVGVIAAQSIG 906
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 99.8 bits (247), Expect = 4e-21, Method: Composition-based stats.
Identities = 46/85 (54%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
G+ EL+ K I G D++++ NATLLFQ L+RS K V YRL+ AFEW++GE
Sbjct: 992 GLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGE 1051
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
+E RFQQA +PGEMVG LAAQS+G
Sbjct: 1052 VEARFQQAVVSPGEMVGTLAAQSIG 1076
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 89.4 bits (220), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 25 GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
GVR L E+ +++ G+ Q+ ++A ENA LF CL+RS L T+ V YRL+ + FEW++
Sbjct: 989 GVRGLQERLLVLRGKSQILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNN 1048
Query: 85 IENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1049 IEAQFLRSIVHPGEMVGVLAAQSIG 1073
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 85.1 bits (209), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 61/86 (70%)
Query: 24 IGVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVG 83
+GV++L E +++ G++++ + A +A LF CL+RS L T+ V + YRL+ +AF+W++
Sbjct: 988 LGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLS 1047
Query: 84 EIENRFQQAQCAPGEMVGALAAQSLG 109
IE +F ++ PGEMVG LAAQS+G
Sbjct: 1048 NIEAQFLRSVVHPGEMVGVLAAQSIG 1073
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 82.4 bits (202), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 14/119 (11%)
Query: 5 VRNSPAQYSGSARRIIGLN-----IGVRELLEKCVIVAGEDQLSKQANEN---------A 50
+ N+ ++ RR+ LN + + +L+ + I+A D N N A
Sbjct: 974 INNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTEDDENFNRAWAEVYFNA 1033
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
T+LF LVRST +K V +RL+ +AF W+ GEIE++F QA PGEMVGALAAQS+G
Sbjct: 1034 TMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESKFLQALAHPGEMVGALAAQSIG 1092
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 38/87 (43%), Positives = 56/87 (64%), Gaps = 3/87 (3%)
Query: 26 VRELLEKCVIVA---GEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLV 82
V LEK VI+ D LS +A NAT+L + +R+ L +KL+ + +++S + +WL+
Sbjct: 1328 VNNFLEKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYLNSKLLTQTHKVSVKGLDWLL 1387
Query: 83 GEIENRFQQAQCAPGEMVGALAAQSLG 109
EIE F ++ C PGE VGALAAQS+G
Sbjct: 1388 QEIEKIFYKSLCHPGECVGALAAQSIG 1414
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 40 DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEM 99
+ LS++ E+A LF +R L +K V + Y+L+ AFE+L+ EI ++ Q+ PGE
Sbjct: 1025 NTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGEN 1084
Query: 100 VGALAAQSLG 109
+GA+AAQS G
Sbjct: 1085 IGAIAAQSCG 1094
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 45/70 (64%)
Query: 40 DQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEM 99
+ LS++ E+A LF +R L +K V + Y+L+ AFE+L+ EI ++ Q+ PGE
Sbjct: 1025 NTLSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGEN 1084
Query: 100 VGALAAQSLG 109
+GA+AAQS G
Sbjct: 1085 IGAIAAQSCG 1094
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 37/57 (64%)
Query: 53 LFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+ L+R+ L K V +RL++EAF W+V I+ + +A+ P EMVG LAAQS+G
Sbjct: 1002 ILNVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAAQSVG 1058
>sp|Q9V113|RPOA2_PYRAB DNA-directed RNA polymerase subunit A'' OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVA--ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V+ L KL+ E Y+L+ E ++ E+ +++A PGE VG +AAQS+G
Sbjct: 22 VKQELYEKLIKYNEKYKLTKAEVETIIDEVVKEYERALVEPGEAVGTVAAQSIG 75
>sp|Q5JE34|RPOA2_PYRKO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoA2 PE=3
SV=1
Length = 391
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVA--ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++ L KL+ E Y+L + + ++ E +Q+A PGE VG +AAQS+G
Sbjct: 20 IKEELYAKLIEYNEKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAAQSIG 73
>sp|O93777|RPOA2_PYRHO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVA--ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V+ L KL+ E Y+L+ E ++ E+ +++A PGE VG +AAQS+G
Sbjct: 22 VKQELYEKLIKYNEKYKLTKVEVETIIDEVIKEYEKALIEPGEAVGTVAAQSIG 75
>sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoA2
PE=1 SV=1
Length = 397
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKL--VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V+S L KL E Y+L+ E ++ ++ +++A PGE VG +AAQS+G
Sbjct: 22 VKSELYEKLKKYNEKYKLTKAEIEAIIDDVVKEYERALVEPGEPVGTVAAQSIG 75
>sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS=Thermococcus celer
GN=rpoA2 PE=3 SV=2
Length = 393
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVAEN--YRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++ L KL+ N Y+L + ++ E +Q+A PGE +G +AAQS+G
Sbjct: 20 IKEELYAKLIEYNKKYKLKKAEVQAIIDETVKEYQKALIEPGEAIGTVAAQSIG 73
>sp|C5A207|RPOA2_THEGJ DNA-directed RNA polymerase subunit A'' OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=rpoA2 PE=3 SV=1
Length = 391
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVAEN--YRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++ L KL+ N Y+L E ++ + N +++A PGE +G +AAQS+G
Sbjct: 20 IKEELYNKLIEYNKKYKLKKAEVEAIIEDAVNEYRKALVEPGEPIGTVAAQSIG 73
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 41 QLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMV 100
++ K+ + L + + L K Y+ S + F+ +V + A+ GEMV
Sbjct: 1005 RIKKEDEKRIKFLMKIYLYDVLAPKKCTHVYKFSKQEFDEIVDYFKKTIMLAKVEGGEMV 1064
Query: 101 GALAAQSLG 109
G +AAQS+G
Sbjct: 1065 GFVAAQSIG 1073
>sp|B6YT17|RPOA2_THEON DNA-directed RNA polymerase subunit A'' OS=Thermococcus onnurineus
(strain NA1) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 58 VRSTLCTKLVAEN--YRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++ L KL+ N Y+ E ++ E +Q + PGE +G +AAQS+G
Sbjct: 20 IKEELYNKLIEYNKKYKFKKAEVEAIIEETVKEYQNSLVEPGEAIGTVAAQSIG 73
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus GN=Polr1a
PE=1 SV=2
Length = 1717
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 70 NYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+Y+ S + + L ++ ++Q++ C PGE VG LAAQS+G
Sbjct: 1188 SYKKSELSLDRLRTLLQLKWQRSLCDPGEAVGLLAAQSIG 1227
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens GN=POLR1A
PE=1 SV=2
Length = 1720
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 69 ENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++Y S + + L ++ ++Q++ C PGE VG LAAQS+G
Sbjct: 1180 KSYEKSELSLDRLRTLLQLKWQRSLCEPGEAVGLLAAQSIG 1220
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 72 RLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
R++ E + +++ +AQ PG VGAL AQS+G
Sbjct: 1005 RITPTQLEKFLETCRDKYMRAQMEPGSAVGALCAQSIG 1042
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 32.7 bits (73), Expect = 0.69, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 88 RFQQAQCAPGEMVGALAAQSLG 109
++Q++ C PGE VG LAAQS+G
Sbjct: 1206 KWQRSLCDPGEAVGLLAAQSIG 1227
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A
PE=2 SV=1
Length = 1390
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 72 RLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
R++ E + +++ +AQ PG VGAL AQS+G
Sbjct: 1005 RITPTQIEKFLETCRDKYMRAQMEPGSAVGALCAQSIG 1042
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 72 RLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
R++ E + +++ +AQ PG VGAL AQS+G
Sbjct: 1005 RITPTQVEKFLETCRDKYMRAQMEPGSAVGALCAQSIG 1042
>sp|Q58446|RPOA2_METJA DNA-directed RNA polymerase subunit A'' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA2 PE=3 SV=1
Length = 859
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 58 VRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
++ L KL E L+ E + ++ E+ N +++A P E VG +AAQS+G
Sbjct: 19 LKDELFEKLSKEK-DLTEEMVDEIIDEVVNAYRKALVEPYEAVGIVAAQSIG 69
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 32.3 bits (72), Expect = 0.92, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 88 RFQQAQCAPGEMVGALAAQSLG 109
R+QQ+ PGE VG LA+QS+G
Sbjct: 1182 RYQQSLVDPGESVGVLASQSIG 1203
>sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA2 PE=3 SV=1
Length = 451
Score = 32.3 bits (72), Expect = 0.99, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V + + LS + + L+ + + +A+ GE VG +AAQS+G
Sbjct: 99 VMKKHELSDDELDELIRRVRRAYDRARVEAGEAVGTVAAQSVG 141
>sp|P38297|FZO1_YEAST Transmembrane GTPase FZO1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=FZO1 PE=1 SV=1
Length = 855
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 22 LNIGVRELLEKCVIVAGEDQLSKQANEN---ATLL----FQCLVRSTLCTKLVAENYRL 73
L + RE+L C I+ + Q++K+ EN + LL FQ L T+ KL+ E L
Sbjct: 794 LRVPTREILRSCEIIMDKKQITKKELENKKESNLLSIKFFQSLYEGTVAQKLMVEEINL 852
>sp|Q2RM40|Y161_MOOTA Putative ATP:guanido phosphotransferase Moth_0161 OS=Moorella
thermoacetica (strain ATCC 39073) GN=Moth_0161 PE=3 SV=1
Length = 350
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 31 EKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQ 90
EK V++ ++ +S NE L QCL L ++ E +RL+ A + L E++ F
Sbjct: 102 EKAVVLRDDEAVSIMVNEEDHLRLQCL----LPAMMLHEAWRLADAADDALENELDFAFD 157
Query: 91 Q 91
Q
Sbjct: 158 Q 158
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGTEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKIQPR 95
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 27/43 (62%)
Query: 67 VAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
V++ YR+S ++ + ++++A+ PG +GA+ AQS+G
Sbjct: 1056 VSQLYRISEKSVRKFLEIALFKYRKARLEPGTAIGAIGAQSIG 1098
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2
SV=1
Length = 406
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGAEQLEALKAFVESMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPR 95
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 66 LVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+V + +R++ E + +++ +A+ PG VGA+ AQS+G
Sbjct: 1069 VVNQIHRITKTQIELFLDICLDKYSRARIEPGTAVGAIGAQSIG 1112
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGAEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPR 95
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2
SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGAEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPR 95
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis
GN=COPS4 PE=2 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGAEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPR 95
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGAEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +I+ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEIYHFTLEKIQPR 95
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 1 MVKSVRNSPAQY---SGSARRIIGLNIGVRELLEKCVIVAGEDQL-------SKQANENA 50
M +VR AQ SGS + + G R++LEK + ++G +QL NEN
Sbjct: 1 MAAAVRQDLAQLMNSSGSHKDLAG---KYRQILEKAIQLSGTEQLEALKAFVEAMVNENV 57
Query: 51 TLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENR 88
+L+ + + CT L + E + + + +++ R
Sbjct: 58 SLVISRQLLTDFCTHLPNLPDSTAKEVYHFTLEKVQPR 95
>sp|A6UV49|RPOA2_META3 DNA-directed RNA polymerase subunit A'' OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 39 EDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGE 98
E + +Q EN L L++ L K+++E ++ E +++ P E
Sbjct: 2 EKTMLEQKLENTILPL--LLKKELINKIISEKIE-DENIIRDIISETVKSYERTLVEPNE 58
Query: 99 MVGALAAQSLG 109
VG +AAQSLG
Sbjct: 59 SVGVVAAQSLG 69
>sp|P09847|RPOA2_METTW DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA2 PE=1 SV=2
Length = 449
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 73 LSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
LS + + LV + +++A GE VG +AAQS+G
Sbjct: 105 LSDDELDELVRGVRRAYERAMVEAGEAVGTVAAQSVG 141
>sp|P14247|RPOA2_METVS DNA-directed RNA polymerase subunit A'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA2 PE=3 SV=2
Length = 386
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 57 LVRSTLCTKLVAENYRLSSEAFEWLVGEIENR----FQQAQCAPGEMVGALAAQSLG 109
L+R L K++ EN E++V EI + + PGE VG +AAQS+G
Sbjct: 18 LLRRELSEKILKENINE-----EYIVDEIIQETIRAYSRTVIEPGEAVGVIAAQSIG 69
>sp|Q8IWZ3|ANKH1_HUMAN Ankyrin repeat and KH domain-containing protein 1 OS=Homo sapiens
GN=ANKHD1 PE=1 SV=1
Length = 2542
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Query: 27 RELLEKC-----VIVAGEDQLSKQANENATLLFQCL 57
+ELL+KC IV +DQ + +AN+NA++L + L
Sbjct: 1400 KELLKKCHQCVETIVKAKDQQAAEANKNASILLKEL 1435
>sp|Q6LXI7|RPOA2_METMP DNA-directed RNA polymerase subunit A'' OS=Methanococcus
maripaludis (strain S2 / LL) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 57 LVRSTLCTKLVAENYRLSSEAF-EWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
L++ L K++ E +S E + ++ E +++ PGE VG +AAQS+G
Sbjct: 18 LLKRELSEKILRE--EISEEYLVDEIISETTRAYERTLVEPGEAVGVVAAQSIG 69
>sp|B1M509|ARLY_METRJ Argininosuccinate lyase OS=Methylobacterium radiotolerans (strain
ATCC 27329 / DSM 1819 / JCM 2831) GN=argH PE=3 SV=1
Length = 459
Score = 29.3 bits (64), Expect = 7.8, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 65 KLVAENYRLSSEAFEWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
+ Y +++ +WLV E+ F+QA G +VG +A+ +G
Sbjct: 359 RAAGSGYATATDLADWLVRELGLPFRQAHHVTGRLVGVASAKGVG 403
>sp|A4FWF5|RPOA2_METM5 DNA-directed RNA polymerase subunit A'' OS=Methanococcus
maripaludis (strain C5 / ATCC BAA-1333) GN=rpoA2 PE=3
SV=1
Length = 386
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 57 LVRSTLCTKLVAENYRLSSEAF-EWLVGEIENRFQQAQCAPGEMVGALAAQSLG 109
L++ L K++ + LS E + ++ E +++ PGE VG +AAQS+G
Sbjct: 18 LLKRELSEKILKDG--LSEEYLVDEIISETTRAYERTLVEPGEAVGVVAAQSIG 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,744,835
Number of Sequences: 539616
Number of extensions: 1179959
Number of successful extensions: 3450
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 3408
Number of HSP's gapped (non-prelim): 60
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)