RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5725
         (117 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
            [TaxId: 4932]}
          Length = 1449

 Score = 70.3 bits (171), Expect = 5e-16
 Identities = 37/85 (43%), Positives = 60/85 (70%)

Query: 25   GVRELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGE 84
            GV++L E  +++ G++++ + A  +A  LF CL+RS L T+ V + YRL+ +AF+W++  
Sbjct: 988  GVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSN 1047

Query: 85   IENRFQQAQCAPGEMVGALAAQSLG 109
            IE +F ++   PGEMVG LAAQS+G
Sbjct: 1048 IEAQFLRSVVHPGEMVGVLAAQSIG 1072


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 41.3 bits (96), Expect = 7e-06
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 28   ELLEKCVIVAGEDQLSKQANENATLLFQCLVRSTLCTKLVAENYRLSSEAFEWLVGEIEN 87
             L E   +   +  L  +A E A  + +  VRS L  +     Y +  + + +      +
Sbjct: 1158 RLEEGRYLSMDDVHLLIKAAE-AGEIQEVPVRSPLTCQ---TRYGVCQKCYGY------D 1207

Query: 88   RFQQAQCAPGEMVGALAAQSLG 109
                   + GE VG +AAQS+G
Sbjct: 1208 LSMARPVSIGEAVGIVAAQSIG 1229


>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
           musculus), ARL2 [TaxId: 10090]}
          Length = 165

 Score = 24.6 bits (52), Expect = 3.6
 Identities = 4/13 (30%), Positives = 8/13 (61%)

Query: 76  EAFEWLVGEIENR 88
              +WL+ +I +R
Sbjct: 153 PGIDWLLDDISSR 165


>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
          Length = 267

 Score = 24.5 bits (52), Expect = 3.9
 Identities = 8/20 (40%), Positives = 8/20 (40%), Gaps = 4/20 (20%)

Query: 12  YSGSARRIIGLNIGVRELLE 31
              S  R     IGV  LLE
Sbjct: 244 ALASGER----EIGVLPLLE 259


>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus
           [TaxId: 274]}
          Length = 385

 Score = 24.4 bits (52), Expect = 3.9
 Identities = 6/24 (25%), Positives = 10/24 (41%), Gaps = 2/24 (8%)

Query: 10  AQYSGSARRIIGLNIGVRELLEKC 33
           AQ  G+ R +  ++    E L   
Sbjct: 315 AQGKGTVRSLAPISAV--EALRSA 336


>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
           (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 276

 Score = 23.9 bits (51), Expect = 6.1
 Identities = 8/20 (40%), Positives = 12/20 (60%), Gaps = 4/20 (20%)

Query: 12  YSGSARRIIGLNIGVRELLE 31
           + GSA +    N GV+ LL+
Sbjct: 253 FLGSALK----NKGVQLLLD 268


>d2a7wa1 a.204.1.4 (A:4-94) Phosphoribosyl-ATP pyrophosphatase
          HisE {Chromobacterium violaceum [TaxId: 536]}
          Length = 91

 Score = 22.8 bits (49), Expect = 8.3
 Identities = 7/33 (21%), Positives = 13/33 (39%)

Query: 26 VRELLEKCVIVAGEDQLSKQANENATLLFQCLV 58
          V E   + ++ + +        E A L F  +V
Sbjct: 38 VAEEAAETLMASKDKDKLHLVREVADLWFHTMV 70


>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 186

 Score = 23.3 bits (49), Expect = 8.4
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 76  EAFEWLVGEIENRFQQ 91
           +A E L+  I  R +Q
Sbjct: 168 KAVETLLDLIMKRMEQ 183


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,579
Number of extensions: 14444
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 8
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)