Query psy5727
Match_columns 303
No_of_seqs 208 out of 758
Neff 5.2
Searched_HMMs 46136
Date Sat Aug 17 01:01:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5727.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5727hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02077 SURF4: SURF4 family; 100.0 2E-84 4.4E-89 604.9 28.4 266 15-303 1-267 (267)
2 KOG3998|consensus 100.0 2.9E-78 6.3E-83 553.8 22.5 267 14-303 3-270 (270)
3 COG2259 Predicted membrane pro 99.6 4.6E-15 1E-19 126.9 12.5 111 185-301 9-138 (142)
4 PF05514 HR_lesion: HR-like le 98.8 7.6E-08 1.7E-12 82.6 11.8 69 217-287 68-136 (138)
5 COG2259 Predicted membrane pro 98.5 3.7E-06 8E-11 72.0 13.1 113 29-167 8-126 (142)
6 PF07681 DoxX: DoxX; InterPro 98.1 2.8E-05 6E-10 60.1 8.8 64 192-255 2-85 (85)
7 PF02077 SURF4: SURF4 family; 97.5 0.00024 5.1E-09 67.4 7.5 103 185-298 16-147 (267)
8 PF07681 DoxX: DoxX; InterPro 97.5 0.0014 3.1E-08 50.5 9.7 81 37-143 2-84 (85)
9 PF15111 TMEM101: TMEM101 prot 97.4 0.0046 9.9E-08 57.7 13.2 135 142-287 96-249 (251)
10 PF04173 DoxD: TQO small subun 97.2 0.0017 3.8E-08 57.7 8.2 76 215-299 68-143 (167)
11 PF05514 HR_lesion: HR-like le 97.0 0.014 3.1E-07 50.4 11.6 107 34-165 2-136 (138)
12 KOG3998|consensus 96.4 0.0067 1.4E-07 57.2 5.7 105 185-300 19-152 (270)
13 smart00752 HTTM Horizontally T 93.4 0.27 5.8E-06 46.2 7.3 28 219-246 73-100 (271)
14 PF07291 MauE: Methylamine uti 92.3 5.6 0.00012 35.7 13.8 125 32-163 5-133 (184)
15 PF05090 VKG_Carbox: Vitamin K 90.8 1.6 3.4E-05 44.5 9.6 23 220-242 56-78 (446)
16 PF15111 TMEM101: TMEM101 prot 89.5 2.1 4.6E-05 40.3 8.5 71 217-292 52-123 (251)
17 PF13564 DoxX_2: DoxX-like fam 88.4 11 0.00024 29.9 11.0 54 40-98 2-55 (103)
18 PF07291 MauE: Methylamine uti 81.4 22 0.00048 31.9 10.7 103 188-290 6-138 (184)
19 PF13564 DoxX_2: DoxX-like fam 71.4 28 0.00062 27.5 7.8 41 213-254 36-81 (103)
20 PF04224 DUF417: Protein of un 50.1 2E+02 0.0043 26.1 11.0 34 30-63 8-41 (175)
21 PF13781 DoxX_3: DoxX-like fam 46.8 1.2E+02 0.0025 24.7 7.4 59 214-281 37-99 (102)
22 COG1968 BacA Undecaprenyl pyro 33.6 4.5E+02 0.0097 25.4 15.4 31 156-190 122-152 (270)
23 PRK09546 zntB zinc transporter 30.9 1.5E+02 0.0032 28.4 6.5 58 35-103 266-324 (324)
24 PF08078 PsaX: PsaX family; I 28.0 1.1E+02 0.0023 20.9 3.4 22 233-254 14-35 (37)
25 PF09991 DUF2232: Predicted me 27.3 2.1E+02 0.0044 26.1 6.6 22 68-89 198-219 (290)
26 PF13748 ABC_membrane_3: ABC t 26.6 5E+02 0.011 24.6 9.0 60 188-249 93-152 (237)
27 TIGR00383 corA magnesium Mg(2+ 22.4 3E+02 0.0064 25.9 6.9 60 33-103 258-318 (318)
28 PF02325 YGGT: YGGT family; I 20.8 45 0.00097 25.2 0.8 29 14-42 26-54 (75)
No 1
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=100.00 E-value=2e-84 Score=604.88 Aligned_cols=266 Identities=59% Similarity=1.074 Sum_probs=262.3
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHH
Q psy5727 15 KDYIARAEIFADRVYQSTKAYLPTISRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCIL 94 (303)
Q Consensus 15 ~~~~~~~e~~~~~~~~~~k~~lp~iaR~~lvstF~ed~~~~~~~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~l 94 (303)
+++++|+||++|++.|++|||||++||+||||||+|||+||++||+||++|++++||||++++.+|+.+|+++|++||++
T Consensus 1 ~~~~~~~ed~~~~~~~~~K~~LP~iaR~~iVsTFlED~lRi~~QW~~Q~~yl~~~w~~~~~la~lfl~~n~i~ql~gs~L 80 (267)
T PF02077_consen 1 NEFLSKAEDLADQVLRPTKPYLPTIARFLIVSTFLEDGLRIWFQWSDQVDYLQNSWHCGWFLAVLFLLLNIIGQLVGSIL 80 (267)
T ss_pred ChHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhhe
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccchhhHhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy5727 95 VLLQKRVPLAVGALFFILGGCILVLLQKRVPLAVGALFFIVLLQTIAYKILLDFQFLMRNLALVGALLLVLADSQQEARS 174 (303)
Q Consensus 95 vl~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~q~i~~~~~~~~~~~~rnlsliG~Lll~~~~~~~~~~~ 174 (303)
|++|||+ ++||++|++++++|+++|+++||++|++||+|++|||+++++||+.|+|+
T Consensus 81 Vl~rk~~-----------------------~~a~~~L~~vvvlQ~i~Y~l~~d~~fllRnlsviGgLLLl~aes~~~~~~ 137 (267)
T PF02077_consen 81 VLLRKKV-----------------------EYACGLLFGVVVLQTIAYGLLWDLKFLLRNLSVIGGLLLLLAESMVEKKS 137 (267)
T ss_pred EeeehhH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhccc
Confidence 9999999 99999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCcCCC-CCchhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy5727 175 VFAGVPSIGD-NKPKNYMQLAGRSLLAFMYITLLRFEVTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYY 253 (303)
Q Consensus 175 ~faglp~l~~-~~~~~~llL~GRvLL~lmFi~l~~f~~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~~ 253 (303)
+|||+|++++ +++++|+||+||+++++||+++.+++++..+++..+++.++++++++|||||++|.+|++++...|++.
T Consensus 138 ~faglP~l~~~~~~~~yl~LaGRill~~mFi~~~~~~~s~~~ii~~~~g~~l~i~v~vGyktk~~A~~Lv~~L~~~n~~~ 217 (267)
T PF02077_consen 138 MFAGLPSLGEKNKPKSYLQLAGRILLVLMFITLLHFEWSFLRIILSIVGLALCILVVVGYKTKLSALLLVLWLSIYNVFV 217 (267)
T ss_pred cccCCCccccCCCcchHHHHHhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh
Confidence 9999999998 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCccccccccccC
Q psy5727 254 NCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRGPGSVSMDQHKKNW 303 (303)
Q Consensus 254 h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~GpG~~SlD~~kK~~ 303 (303)
|+||++|++++.||+.|||||||+|++||++++++.|||++|+||+||+|
T Consensus 218 n~fW~~~~~~~~~dflkydFfq~lSviGGLLllv~~GpG~~S~D~~KK~~ 267 (267)
T PF02077_consen 218 NNFWFYPSDSPMRDFLKYDFFQTLSVIGGLLLLVNLGPGGLSLDEKKKKW 267 (267)
T ss_pred hhhhcCCCCchHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccHHHhccCC
Confidence 99999998889999999999999999999999999999999999999998
No 2
>KOG3998|consensus
Probab=100.00 E-value=2.9e-78 Score=553.77 Aligned_cols=267 Identities=48% Similarity=0.928 Sum_probs=263.1
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHH
Q psy5727 14 NKDYIARAEIFADRVYQSTKAYLPTISRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCI 93 (303)
Q Consensus 14 ~~~~~~~~e~~~~~~~~~~k~~lp~iaR~~lvstF~ed~~~~~~~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~ 93 (303)
++++++++||.+|++.|++|||+||+||+||||||+|||+|+++||+||++|++.+||||+++|.+|+.+|+++|++||.
T Consensus 3 ~n~~~~~~ed~ae~~~r~~k~ylptlaRl~ivSTf~eD~lri~~qw~~q~~~~~~~~~~~~~~a~~~~~v~~l~~l~g~~ 82 (270)
T KOG3998|consen 3 INEMASRDEDIAETFKRVTKPYLPTLARLLIVSTFFEDGLRIVFQWPLQVSYLNINWGCGYFFAGVFTIVMVLGQLVGSV 82 (270)
T ss_pred HHHHHHhhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcce
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccccccchhhHhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5727 94 LVLLQKRVPLAVGALFFILGGCILVLLQKRVPLAVGALFFIVLLQTIAYKILLDFQFLMRNLALVGALLLVLADSQQEAR 173 (303)
Q Consensus 94 lvl~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~q~i~~~~~~~~~~~~rnlsliG~Lll~~~~~~~~~~ 173 (303)
+|+.|||+ .+|||.|++++++|+++|+++|++++++||+|++||++++++|++.|++
T Consensus 83 liv~rkkv-----------------------~~a~glL~~~~~lq~i~y~i~t~~~~~~rN~sviggllLllaes~i~~~ 139 (270)
T KOG3998|consen 83 LIVLRKKV-----------------------AYATGLLLFIVVLQTIAYSILTDLVFLLRNISVIGGLLLLLAESRIEKR 139 (270)
T ss_pred Eeeeehhh-----------------------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Confidence 99999999 9999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCcCCCC-CchhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy5727 174 SVFAGVPSIGDN-KPKNYMQLAGRSLLAFMYITLLRFEVTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIY 252 (303)
Q Consensus 174 ~~faglp~l~~~-~~~~~llL~GRvLL~lmFi~l~~f~~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~ 252 (303)
+.|||+|+++|+ +++.+++++||+++.+||+++.|++.|+.+++..+++.++++++.+|||||++|.+|++++...|++
T Consensus 140 ~~fa~lp~m~e~~~~~~~lllagRvlL~~Mfi~~~~f~~S~~~il~~Iv~~~l~i~v~lGfktKl~a~llvl~L~~~ni~ 219 (270)
T KOG3998|consen 140 SLFAGLPTMDEHNSKKTYLLLAGRVLLVLMFISLIHFGMSWTRILLSIVSFGLMIFVWLGFKTKLFAILLVLWLFGYNIL 219 (270)
T ss_pred hhhccCCccccccCcchhhhhhHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh
Confidence 999999999985 5999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCccccccccccC
Q psy5727 253 YNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRGPGSVSMDQHKKNW 303 (303)
Q Consensus 253 ~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~GpG~~SlD~~kK~~ 303 (303)
.|+||+.|.+++.||+.||||||++|++||+|+++++|||++|+||+||+|
T Consensus 220 ~N~~w~ip~~~~~~df~rydFfqtlSvIGGlLllv~~GpG~~SvDe~KK~w 270 (270)
T KOG3998|consen 220 LNAWWTIPSDNPLRDFSRYDFFQTLSVIGGLLLLVNTGPGGVSVDEKKKKW 270 (270)
T ss_pred hchhhhccCCchHHHHHHHHHHHHHHHhccEEEEEEecCceeeecccccCC
Confidence 999999999999999999999999999999999999999999999999999
No 3
>COG2259 Predicted membrane protein [Function unknown]
Probab=99.62 E-value=4.6e-15 Score=126.92 Aligned_cols=111 Identities=25% Similarity=0.432 Sum_probs=93.9
Q ss_pred CCchhhHHHHHHHHHHHHHHH-----hh-cchh-------------hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q psy5727 185 NKPKNYMQLAGRSLLAFMYIT-----LL-RFEV-------------TFLQVIQDLFGTALMVLVTIGYKTKLSALILVLV 245 (303)
Q Consensus 185 ~~~~~~llL~GRvLL~lmFi~-----l~-~f~~-------------s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~ 245 (303)
...+++.+++.|++++.+|+. +. +++. .+.+.++.+.|+++++++++|++||++|..++++
T Consensus 9 ~~~~~~~lli~Rl~l~~~fi~~G~~K~~~~~~g~~~~~~~~g~p~~~~~a~~~~~~El~~glllllGl~tr~aA~~l~~~ 88 (142)
T COG2259 9 SALSDLGLLILRLLLALIFIVSGLGKLFGGLAGTIQYFESLGLPPPTLLAILAAILELVGGLLLLLGLFTRLAALVLAVF 88 (142)
T ss_pred hccchHHHHHHHHHHHHHHHHHhHHHHccCcHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999 23 3321 2346678899999999999999999999999999
Q ss_pred HHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCccccccccc
Q psy5727 246 LSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRGPGSVSMDQHKK 301 (303)
Q Consensus 246 Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~GpG~~SlD~~kK 301 (303)
++.+++..|.+|.....+ + +.|.+|++++||++.++..|||++|+|++++
T Consensus 89 ~l~a~~~~h~~~~~~~~~--~----~~~~~~l~~~~~~l~l~~~G~G~~sld~~~~ 138 (142)
T COG2259 89 MLVAIFAVHAFWGFFGLA--N----NGFEKNLLLIGGLLLLAITGAGRLSLDAKLR 138 (142)
T ss_pred HHHHHHHHhcchhhcccc--c----hhHHHHHHHHHHHHHHHhcCCcccccchhcc
Confidence 999999999999752211 1 4788999999999999999999999999844
No 4
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=98.79 E-value=7.6e-08 Score=82.63 Aligned_cols=69 Identities=22% Similarity=0.254 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy5727 217 IQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIV 287 (303)
Q Consensus 217 l~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~ 287 (303)
..+..+-+|+++.+.|. ..+|.+|.+++.+++.+.|+||+++.++++....-.+|.||++++|++|...
T Consensus 68 ~~i~lkglGgiLFi~gs--s~GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFl 136 (138)
T PF05514_consen 68 AAIALKGLGGILFIFGS--SFGAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFL 136 (138)
T ss_pred HHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888888885 6899999999999999999999998766555555669999999999998754
No 5
>COG2259 Predicted membrane protein [Function unknown]
Probab=98.47 E-value=3.7e-06 Score=72.03 Aligned_cols=113 Identities=25% Similarity=0.286 Sum_probs=101.2
Q ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccccchh
Q psy5727 29 YQSTKAYLPTISRACLISTFLEDGLRMWF-QWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPLAVGA 107 (303)
Q Consensus 29 ~~~~k~~lp~iaR~~lvstF~ed~~~~~~-~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l~~g~ 107 (303)
.+..+++...++|+++-..|+..|..|++ +...+.+|++. .+.| ++.+......+.+++|++++++..+.
T Consensus 8 ~~~~~~~~lli~Rl~l~~~fi~~G~~K~~~~~~g~~~~~~~-~g~p--~~~~~a~~~~~~El~~glllllGl~t------ 78 (142)
T COG2259 8 MSALSDLGLLILRLLLALIFIVSGLGKLFGGLAGTIQYFES-LGLP--PPTLLAILAAILELVGGLLLLLGLFT------ 78 (142)
T ss_pred hhccchHHHHHHHHHHHHHHHHHhHHHHccCcHHHHHHHHH-cCCC--hHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 45678899999999999999999999999 89999999994 4555 77788888999999999999999999
Q ss_pred hHhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHhhhhhhH-----HHHHHHHHHHHHHHHHHHH
Q psy5727 108 LFFILGGCILVLLQKRVPLAVGALFFIVLLQTIAYKILLDF-----QFLMRNLALVGALLLVLAD 167 (303)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~q~i~~~~~~~~-----~~~~rnlsliG~Lll~~~~ 167 (303)
+.++..+.++.....+..|..|+. +.+.+|++.+|+++.+...
T Consensus 79 -----------------r~aA~~l~~~~l~a~~~~h~~~~~~~~~~~~~~~~l~~~~~~l~l~~~ 126 (142)
T COG2259 79 -----------------RLAALVLAVFMLVAIFAVHAFWGFFGLANNGFEKNLLLIGGLLLLAIT 126 (142)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhcchhhccccchhHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999864 4799999999999888764
No 6
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=98.07 E-value=2.8e-05 Score=60.09 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHH-----hh--cch-------------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy5727 192 QLAGRSLLAFMYIT-----LL--RFE-------------VTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNI 251 (303)
Q Consensus 192 lL~GRvLL~lmFi~-----l~--~f~-------------~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~ 251 (303)
+++.|+.++.+|+. +. +++ +..........|+++++++++|+.||++|..++.+++.+++
T Consensus 2 ll~~Ri~lg~~f~~~G~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~gl~l~~G~~tr~aa~~~~~~~~~~~~ 81 (85)
T PF07681_consen 2 LLILRILLGLVFLFHGLQKLFGFGPEGFAGFFAPFGLPPPGLFAYLAGIAELVGGLLLLLGLFTRLAALVLALFMLVATF 81 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 57899999999998 23 221 22346788899999999999999999999999999999999
Q ss_pred Hhhc
Q psy5727 252 YYNC 255 (303)
Q Consensus 252 ~~h~ 255 (303)
.+|+
T Consensus 82 ~~H~ 85 (85)
T PF07681_consen 82 FVHW 85 (85)
T ss_pred HhcC
Confidence 9984
No 7
>PF02077 SURF4: SURF4 family; InterPro: IPR002995 The surfeit locus gene SURF4 (or surf-4) encodes a conserved integral eukaryotic membrane protein of about 270 to 300 amino-acid residues that seems to be located in the endoplasmic reticulum [].; GO: 0016021 integral to membrane
Probab=97.54 E-value=0.00024 Score=67.40 Aligned_cols=103 Identities=21% Similarity=0.371 Sum_probs=81.7
Q ss_pred CCchhhHHHHHHHHHHHHHHH-----hhcc-------------h---hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5727 185 NKPKNYMQLAGRSLLAFMYIT-----LLRF-------------E---VTFLQVIQDLFGTALMVLVTIGYKTKLSALILV 243 (303)
Q Consensus 185 ~~~~~~llL~GRvLL~lmFi~-----l~~f-------------~---~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa 243 (303)
++.|+++..+||.+++.-|+- ..++ + ......+..+.+++|+++++.=.++..+..+|.
T Consensus 16 ~~~K~~LP~iaR~~iVsTFlED~lRi~~QW~~Q~~yl~~~w~~~~~la~lfl~~n~i~ql~gs~LVl~rk~~~~a~~~L~ 95 (267)
T PF02077_consen 16 RPTKPYLPTIARFLIVSTFLEDGLRIWFQWSDQVDYLQNSWHCGWFLAVLFLLLNIIGQLVGSILVLLRKKVEYACGLLF 95 (267)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhhhheEeeehhHHHHHHHHH
Confidence 467899999999999999987 1111 1 122355667889999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCcccccc
Q psy5727 244 LVLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRG--------PGSVSMDQ 298 (303)
Q Consensus 244 ~~Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~G--------pG~~SlD~ 298 (303)
...+...+.++-+|+. . -+..|+|++||++++.+-. ||-.++|+
T Consensus 96 ~vvvlQ~i~Y~l~~d~---------~--fllRnlsviGgLLLl~aes~~~~~~~faglP~l~~ 147 (267)
T PF02077_consen 96 GVVVLQTIAYGLLWDL---------K--FLLRNLSVIGGLLLLLAESMVEKKSMFAGLPSLGE 147 (267)
T ss_pred HHHHHHHHHHHHHHHH---------H--HHHHHhHHHHHHHHHHHHHhhhccccccCCCcccc
Confidence 9999988877765533 1 5677999999999998765 67778877
No 8
>PF07681 DoxX: DoxX; InterPro: IPR011637 These proteins appear to have some sequence similarity with IPR007301 from INTERPRO but their function is unknown []. They are predicted inner membrane proteins.
Probab=97.47 E-value=0.0014 Score=50.49 Aligned_cols=81 Identities=26% Similarity=0.237 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccccchhhHhhhhh
Q psy5727 37 PTISRACLISTFLEDGLRMWF--QWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPLAVGALFFILGG 114 (303)
Q Consensus 37 p~iaR~~lvstF~ed~~~~~~--~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l~~g~~~~~~~~ 114 (303)
+.+.|+++-..|+..|+.|+. ++.+..+|++. ++.+ .+..+.....+.|++++++++++..+
T Consensus 2 ll~~Ri~lg~~f~~~G~~K~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~E~~~gl~l~~G~~t------------- 65 (85)
T PF07681_consen 2 LLILRILLGLVFLFHGLQKLFGFGPEGFAGFFAP-FGLP--PPGLFAYLAGIAELVGGLLLLLGLFT------------- 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHH-cCCC--chHHHHHHHHHHHHHHHHHHHHhhHH-------------
Confidence 568999999999999999999 88899999883 5555 47889999999999999999999999
Q ss_pred hhhhhhhccchhhHHHHHHHHHHHHHHhh
Q psy5727 115 CILVLLQKRVPLAVGALFFIVLLQTIAYK 143 (303)
Q Consensus 115 ~~~~~~~~~~~~~~~~L~~~~~~q~i~~~ 143 (303)
++++..+....+..+...|
T Consensus 66 ----------r~aa~~~~~~~~~~~~~~H 84 (85)
T PF07681_consen 66 ----------RLAALVLALFMLVATFFVH 84 (85)
T ss_pred ----------HHHHHHHHHHHHHHHHHhc
Confidence 8888777777766665544
No 9
>PF15111 TMEM101: TMEM101 protein family
Probab=97.36 E-value=0.0046 Score=57.71 Aligned_cols=135 Identities=20% Similarity=0.337 Sum_probs=87.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcCCCCCchhhHHHHHHHHHHHHHHH----h-----------
Q psy5727 142 YKILLDFQFLMRNLALVGALLLVLADSQQEARSVFAGVPSIGDNKPKNYMQLAGRSLLAFMYIT----L----------- 206 (303)
Q Consensus 142 ~~~~~~~~~~~rnlsliG~Lll~~~~~~~~~~~~faglp~l~~~~~~~~llL~GRvLL~lmFi~----l----------- 206 (303)
|+-...-+.+.|++++||+-+.+.+.- .|..+ ++.+.+.++-.||+.++.--+. +
T Consensus 96 Y~~WLkvR~~sR~laiIGgyL~lasG~-ge~~r---------~kpr~~~l~~tgq~~lgiyli~~Ay~L~~S~Edr~A~l 165 (251)
T PF15111_consen 96 YSEWLKVRMYSRSLAIIGGYLRLASGA-GESYR---------QKPRSRSLQSTGQVFLGIYLICVAYSLQHSKEDRLAYL 165 (251)
T ss_pred hhhHHHHHHHHHHHHHHHhHhhccccc-chhcc---------cCcchhhhhhhhHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 344345688999999999998886521 11111 2345567888999999975544 1
Q ss_pred hcc-hhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhh---cccCCchhHHHHHHHHHhHHHHHHHHHH
Q psy5727 207 LRF-EVTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYYN---CWWVIPAEKAMRDFLKYDFFQTLSVIGG 282 (303)
Q Consensus 207 ~~f-~~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~~h---~FW~~~~~~~~~~~~ky~FfknLSiiGG 282 (303)
.|. ++.....+..+.-.++++++.-||..|.++-.|++.+.+++.+.- +||-....-+.+.+. .-.-+|+++.|+
T Consensus 166 ~hipgge~~l~~~~v~y~~~gl~flsgy~~~~~~~~lav~l~~~~l~iDgnv~yW~~s~~vEfW~Qm-~li~~nv~I~ga 244 (251)
T PF15111_consen 166 NHIPGGEVMLQLLVVLYVVLGLAFLSGYYVKLAAQILAVLLPFVILLIDGNVKYWHKSRRVEFWNQM-KLIGRNVGIFGA 244 (251)
T ss_pred hhCCCCchhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHhheEEecchhhhhcchhhhHHHHH-HHHHhcchHhhh
Confidence 121 122223444556678889999999999999999998888877653 577654422222221 133468999999
Q ss_pred HHHHH
Q psy5727 283 LLMIV 287 (303)
Q Consensus 283 LLll~ 287 (303)
+++++
T Consensus 245 ~~ila 249 (251)
T PF15111_consen 245 LLILA 249 (251)
T ss_pred eeeee
Confidence 87763
No 10
>PF04173 DoxD: TQO small subunit DoxD; InterPro: IPR007301 P97207 from SWISSPROT is a subunit of the terminal quinol oxidase present in the plasma membrane of Acidianus ambivalens, with calculated molecular mass of 20.4 kDa []. Thiosulphate:quinone oxidoreductase (TQO) is one of the early steps in elemental sulphur oxidation. A novel TQO enzyme was purified from the thermo-acidophilic archaeon A. ambivalens and shown to consist of a large subunit (DoxD) and a smaller subunit (DoxA). The DoxD- and DoxA-like two subunits are fused together in a single polypeptide in Q8AAF0 from SWISSPROT.
Probab=97.18 E-value=0.0017 Score=57.66 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcc
Q psy5727 215 QVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRGPGSV 294 (303)
Q Consensus 215 ~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~GpG~~ 294 (303)
.+...++|.+.|+++++|+.||++|+..+..... +..-..|.-+.-.+ |.--|...+.+-+.+...|+|++
T Consensus 68 lv~ft~vE~~~Gl~LilGL~TRLaa~~~~~l~~~--i~L~a~W~g~tc~d-------Ew~i~~l~~a~~~~L~~~g~g~~ 138 (167)
T PF04173_consen 68 LVVFTIVEIIFGLLLILGLFTRLAALVALGLALG--ILLSAGWLGTTCLD-------EWQINSLMMAAGLTLFLTGGGRF 138 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccCCCCCcc-------HHHHHHHHHHHHHHHHHhcCCcc
Confidence 3455678999999999999999999986544443 33456786542111 22123333334445556799999
Q ss_pred ccccc
Q psy5727 295 SMDQH 299 (303)
Q Consensus 295 SlD~~ 299 (303)
|+|..
T Consensus 139 sLD~~ 143 (167)
T PF04173_consen 139 SLDYY 143 (167)
T ss_pred ccHHH
Confidence 99984
No 11
>PF05514 HR_lesion: HR-like lesion-inducing ; InterPro: IPR008637 This is a family of plant proteins that are associated with the hypersensitive response (HR) pathway of defence against plant pathogens.
Probab=96.97 E-value=0.014 Score=50.40 Aligned_cols=107 Identities=18% Similarity=0.212 Sum_probs=74.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhccHHHH---------------HHHHHhhhcC--hhhHHHHHHHHHHHHHHHHHHHh
Q psy5727 34 AYLPTISRACLISTFLEDGLRMWFQWNEQR---------------EYMDLSWHCG--YFLGSLFVMINLIGQLGGCILVL 96 (303)
Q Consensus 34 ~~lp~iaR~~lvstF~ed~~~~~~~w~~~~---------------~y~~~~~~~~--~~~~~~~~~~~~i~~l~g~~lvl 96 (303)
+++..++|++..|.|+-+++++.....+.- +.++.+-|.+ ..=..-.+...+..+-+|+++-+
T Consensus 2 ~f~sf~GRvLFAs~FllSA~q~f~~fg~dGgpaak~l~Pkl~~~~~~i~s~lG~~vp~~~~k~lv~~~i~lkglGgiLFi 81 (138)
T PF05514_consen 2 GFSSFVGRVLFASVFLLSAWQKFNEFGDDGGPAAKALAPKLNVFKKHISSKLGVQVPHIDVKHLVAAAIALKGLGGILFI 81 (138)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHchhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999998886622 1222222222 12223466667778888887777
Q ss_pred hcccccccchhhHhhhhhhhhhhhhccchhhHHHHHHHHHHHHHHhhhhh-----------hHHHHHHHHHHHHHHHHHH
Q psy5727 97 LQKRVPLAVGALFFILGGCILVLLQKRVPLAVGALFFIVLLQTIAYKILL-----------DFQFLMRNLALVGALLLVL 165 (303)
Q Consensus 97 ~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~q~i~~~~~~-----------~~~~~~rnlsliG~Lll~~ 165 (303)
+.... |.-+|.....+.|-+-+-+| .++.+.+|++++||||.-+
T Consensus 82 ~gss~-------------------------GA~LLll~l~~~Tpi~~dFyn~~~~~~e~~~~l~~F~qnlAL~GALLfFl 136 (138)
T PF05514_consen 82 FGSSF-------------------------GAYLLLLYLAIVTPILYDFYNYDSESAEFVQLLIMFLQNLALFGALLFFL 136 (138)
T ss_pred hcchh-------------------------HHHHHHHHHHHHHHHhhhhhccCCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77655 55567777777777766666 4588999999999998753
No 12
>KOG3998|consensus
Probab=96.36 E-value=0.0067 Score=57.22 Aligned_cols=105 Identities=21% Similarity=0.385 Sum_probs=78.4
Q ss_pred CCchhhHHHHHHHHHHHHHHH-----hhcch----------------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy5727 185 NKPKNYMQLAGRSLLAFMYIT-----LLRFE----------------VTFLQVIQDLFGTALMVLVTIGYKTKLSALILV 243 (303)
Q Consensus 185 ~~~~~~llL~GRvLL~lmFi~-----l~~f~----------------~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa 243 (303)
++.|+|+..++|.++..-|.- ..++. +++...+..+-+++++.+++.+.|.-.+..+|.
T Consensus 19 r~~k~ylptlaRl~ivSTf~eD~lri~~qw~~q~~~~~~~~~~~~~~a~~~~~v~~l~~l~g~~liv~rkkv~~a~glL~ 98 (270)
T KOG3998|consen 19 RVTKPYLPTLARLLIVSTFFEDGLRIVFQWPLQVSYLNINWGCGYFFAGVFTIVMVLGQLVGSVLIVLRKKVAYATGLLL 98 (270)
T ss_pred HhccchhHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcceEeeeehhhHHHhHHHH
Confidence 467899999999999999987 11111 122345556778888999999999999999999
Q ss_pred HHHHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------CCcccccccc
Q psy5727 244 LVLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRG--------PGSVSMDQHK 300 (303)
Q Consensus 244 ~~Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiGGLLll~~~G--------pG~~SlD~~k 300 (303)
......++.++-+|+. . -+++|.|++||++++..-. +|-.++|+.+
T Consensus 99 ~~~~lq~i~y~i~t~~---------~--~~~rN~sviggllLllaes~i~~~~~fa~lp~m~e~~ 152 (270)
T KOG3998|consen 99 FIVVLQTIAYSILTDL---------V--FLLRNISVIGGLLLLLAESRIEKRSLFAGLPTMDEHN 152 (270)
T ss_pred HHHHHHHHHHHHHHHH---------H--HHHHHhHHHHHHHHHHHHHHHhhhhhhccCCcccccc
Confidence 8888888877766533 2 5778999999999986542 1335688765
No 13
>smart00752 HTTM Horizontally Transferred TransMembrane Domain. Sequence analysis of vitamin K dependent gamma-carboxylases (VKGC) revealed the presence of a novel domain, HTTM (Horizontally Transferred TransMembrane) in its N-terminus. In contrast to most known domains, HTTM contains four transmembrane regions. Its occurrence in eukaryotes, bacteria and archaea is more likely caused by horizontal gene transfer than by early invention. The conservation of VKGC catalytic sites indicates an enzymatic function also for the other family members.
Probab=93.41 E-value=0.27 Score=46.20 Aligned_cols=28 Identities=25% Similarity=0.467 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy5727 219 DLFGTALMVLVTIGYKTKLSALILVLVL 246 (303)
Q Consensus 219 ~~vel~ggi~lilG~ktRlaA~lLa~~L 246 (303)
-.+..+.++++++||+||+++.+..+..
T Consensus 73 ~~~~~v~~l~~~lG~~tR~~~~l~~l~~ 100 (271)
T smart00752 73 YALMIVGALLLLLGYRTRLSSVLFWLLV 100 (271)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3566778899999999999887664433
No 14
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=92.27 E-value=5.6 Score=35.69 Aligned_cols=125 Identities=18% Similarity=0.091 Sum_probs=82.5
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccccch---hh
Q psy5727 32 TKAYLPTISRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPLAVG---AL 108 (303)
Q Consensus 32 ~k~~lp~iaR~~lvstF~ed~~~~~~~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l~~g---~~ 108 (303)
..|++..+.|.++...|.-.|+.|+.+.++-.+.+++..-.|......+...-...+++.+++.+.......|.. ++
T Consensus 5 ~~P~v~~~~r~~l~llf~~aai~Kl~d~~~F~~~i~~y~llP~~~~~~~A~~lP~~El~~gl~Ll~~~~~~~a~~~a~~L 84 (184)
T PF07291_consen 5 NDPVVSLLLRLFLALLFLYAAISKLRDPEAFAASIAAYRLLPDWLVRPVAWALPWLELALGLLLLFPPTRRWAALLAAAL 84 (184)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999999999998888876688888888888888899988888887776543322 22
Q ss_pred Hhhhhhhhh-hhhhccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q psy5727 109 FFILGGCIL-VLLQKRVPLAVGALFFIVLLQTIAYKILLDFQFLMRNLALVGALLL 163 (303)
Q Consensus 109 ~~~~~~~~~-~~~~~~~~~~~~~L~~~~~~q~i~~~~~~~~~~~~rnlsliG~Lll 163 (303)
+....+-+. .+.+.|-++.||.-... -+-.-+...+.||..+.+.-+.
T Consensus 85 l~~F~~ai~~~~~rg~~~idCGCfG~~-------~~~~l~~~~v~Rn~~L~~~al~ 133 (184)
T PF07291_consen 85 LLVFTAAIAINLLRGRTDIDCGCFGGG-------SSEPLGWFLVVRNLLLAALALA 133 (184)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCCC-------CCCccCHHHHHHHHHHHHHHHH
Confidence 222212222 23334434444431100 0011233567899988765433
No 15
>PF05090 VKG_Carbox: Vitamin K-dependent gamma-carboxylase; InterPro: IPR007782 Using reduced vitamin K, oxygen, and carbon dioxide, gamma-glutamyl carboxylase post-translationally modifies certain glutamates by adding carbon dioxide to the gamma position of those amino acids. In vertebrates, the modification of glutamate residues of target proteins is facilitated by an interaction between a propeptide present on target proteins and the gamma-glutamyl carboxylase [].; GO: 0008488 gamma-glutamyl carboxylase activity, 0017187 peptidyl-glutamic acid carboxylation
Probab=90.77 E-value=1.6 Score=44.47 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Q psy5727 220 LFGTALMVLVTIGYKTKLSALIL 242 (303)
Q Consensus 220 ~vel~ggi~lilG~ktRlaA~lL 242 (303)
++..++++++++|+++|+++++.
T Consensus 56 ~v~~l~al~i~lG~~~R~s~i~f 78 (446)
T PF05090_consen 56 LVMGLAALAIALGYRYRLSIILF 78 (446)
T ss_pred HHHHHHHHHheehHHHHHHHHHH
Confidence 34456778999999999987654
No 16
>PF15111 TMEM101: TMEM101 protein family
Probab=89.46 E-value=2.1 Score=40.29 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHH-hHHHHHHHHHHHHHHHHhCCC
Q psy5727 217 IQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYYNCWWVIPAEKAMRDFLKY-DFFQTLSVIGGLLMIVLRGPG 292 (303)
Q Consensus 217 l~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~~~~~h~FW~~~~~~~~~~~~ky-~FfknLSiiGGLLll~~~GpG 292 (303)
+...+.++|+...-.|++.|+.|+..++-+.+.+...+- ++..+..|.+|- -+-+++++|||++.++- |.|
T Consensus 52 ~~~gv~vlc~T~MSf~~krR~fai~tA~QL~Isty~~~~----~~~~~Y~~WLkvR~~sR~laiIGgyL~las-G~g 123 (251)
T PF15111_consen 52 VDMGVAVLCATFMSFGVKRRWFAIVTAVQLAISTYLSCF----GQQVHYSEWLKVRMYSRSLAIIGGYLRLAS-GAG 123 (251)
T ss_pred hhHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHh----cCccchhhHHHHHHHHHHHHHHHhHhhccc-ccc
Confidence 445577788899999999999999999888876555441 111112233332 24469999999998873 444
No 17
>PF13564 DoxX_2: DoxX-like family
Probab=88.35 E-value=11 Score=29.89 Aligned_cols=54 Identities=22% Similarity=0.144 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhc
Q psy5727 40 SRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQ 98 (303)
Q Consensus 40 aR~~lvstF~ed~~~~~~~w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~ 98 (303)
.+..+...|+-+|..+.++.++..+-+++ +|.|. -+.-...+.|+.|++.++.+
T Consensus 2 l~~lla~~f~~~g~~kl~~~~~~~~~~~~-~g~p~----~~~~~~G~~Ei~gai~Ll~~ 55 (103)
T PF13564_consen 2 LTILLALFFLFSGVMKLFGPPEMVEMFPK-LGYPK----WFVYVVGVLEILGAIGLLIP 55 (103)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHhHh-cCCCH----HHHHHHHHHHHHHHHHHHHc
Confidence 45778889999999999999888877775 56663 34667889999999998887
No 18
>PF07291 MauE: Methylamine utilisation protein MauE; InterPro: IPR009908 This entry consists of several bacterial methylamine utilisation MauE proteins. Synthesis of enzymes involved in methylamine oxidation via methylamine dehydrogenase (MADH) is encoded by genes present in the mau cluster. MauE and MauD are specifically involved in the processing, transport, and/or maturation of the beta-subunit and that the absence of each of these proteins leads to production of a non-functional beta-subunit which becomes rapidly degraded [].; GO: 0030416 methylamine metabolic process, 0016021 integral to membrane
Probab=81.43 E-value=22 Score=31.89 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=59.5
Q ss_pred hhhHHHHHHHHHHHHHHH-----hhcch---hh-------------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy5727 188 KNYMQLAGRSLLAFMYIT-----LLRFE---VT-------------FLQVIQDLFGTALMVLVTIGYKTKLSALILVLVL 246 (303)
Q Consensus 188 ~~~llL~GRvLL~lmFi~-----l~~f~---~s-------------~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~L 246 (303)
+.+..++.|++++.+|+. +.|++ .+ ..+.....+|++.+++++++...+.++...+..+
T Consensus 6 ~P~v~~~~r~~l~llf~~aai~Kl~d~~~F~~~i~~y~llP~~~~~~~A~~lP~~El~~gl~Ll~~~~~~~a~~~a~~Ll 85 (184)
T PF07291_consen 6 DPVVSLLLRLFLALLFLYAAISKLRDPEAFAASIAAYRLLPDWLVRPVAWALPWLELALGLLLLFPPTRRWAALLAAALL 85 (184)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998 22321 11 1134556899999999999998887755444333
Q ss_pred HHHH-HHhhcccCCc-h-------hHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Q psy5727 247 SFLN-IYYNCWWVIP-A-------EKAMRDFLKYDFFQTLSVIGGLLMIVLRG 290 (303)
Q Consensus 247 l~~~-~~~h~FW~~~-~-------~~~~~~~~ky~FfknLSiiGGLLll~~~G 290 (303)
...+ .+.-+.++.. + ..........+...|+.+++..+.++...
T Consensus 86 ~~F~~ai~~~~~rg~~~idCGCfG~~~~~~l~~~~v~Rn~~L~~~al~la~~~ 138 (184)
T PF07291_consen 86 LVFTAAIAINLLRGRTDIDCGCFGGGSSEPLGWFLVVRNLLLAALALALAALP 138 (184)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHhcc
Confidence 3322 1222233211 0 00001122235678888887665555443
No 19
>PF13564 DoxX_2: DoxX-like family
Probab=71.43 E-value=28 Score=27.48 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHHHHhh
Q psy5727 213 FLQVIQDLFGTALMVLVTIG-----YKTKLSALILVLVLSFLNIYYN 254 (303)
Q Consensus 213 ~~~vl~~~vel~ggi~lilG-----~ktRlaA~lLa~~Ll~~~~~~h 254 (303)
.......++|+++++.++++ .-+++++..+...+..+.. .|
T Consensus 36 ~~~~~~G~~Ei~gai~Ll~~~~~~~~~~~~aa~~l~~~m~~A~~-~h 81 (103)
T PF13564_consen 36 WFVYVVGVLEILGAIGLLIPLFWNPRLSPLAALGLLVLMLGAIY-TH 81 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHH-HH
Confidence 34668889999999999999 4556666666666666554 56
No 20
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=50.11 E-value=2e+02 Score=26.09 Aligned_cols=34 Identities=12% Similarity=0.029 Sum_probs=24.4
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHhhccHHHH
Q psy5727 30 QSTKAYLPTISRACLISTFLEDGLRMWFQWNEQR 63 (303)
Q Consensus 30 ~~~k~~lp~iaR~~lvstF~ed~~~~~~~w~~~~ 63 (303)
.+.+++--.+.|+-++..|+-=|.-|+++.+-+.
T Consensus 8 ~~~~~~g~~i~r~~i~iVl~WiG~lKf~~yEA~g 41 (175)
T PF04224_consen 8 AQLQRLGYNILRLGIVIVLLWIGGLKFTPYEADG 41 (175)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhhhhHHHHhh
Confidence 3455566677888888888888888887776554
No 21
>PF13781 DoxX_3: DoxX-like family
Probab=46.77 E-value=1.2e+02 Score=24.67 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HHHHHHHHhhcccCCchhHHHHHHHHHhHHHHHHHHH
Q psy5727 214 LQVIQDLFGTALMVLVTIGYKTKLSALILVL----VLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIG 281 (303)
Q Consensus 214 ~~vl~~~vel~ggi~lilG~ktRlaA~lLa~----~Ll~~~~~~h~FW~~~~~~~~~~~~ky~FfknLSiiG 281 (303)
......+.|++.|++++..++.|....+-++ .++..++..-++|..|-+ -..||+.+++
T Consensus 37 ~~~~~g~~di~lGl~~l~~~~~r~~~~l~i~~~l~y~~~~~~~~P~lw~~Pf~---------Pl~knlp~l~ 99 (102)
T PF13781_consen 37 LLYAGGLLDIALGLLLLSRRRRRWLLLLQIALLLGYTLAIAILLPELWLHPFN---------PLVKNLPMLA 99 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHhhhh---------hHHHHHHHHH
Confidence 3567788999999999999998877655444 344444444456655443 4667887764
No 22
>COG1968 BacA Undecaprenyl pyrophosphate phosphatase [Lipid transport and metabolism]
Probab=33.64 E-value=4.5e+02 Score=25.39 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcCCCCCchhh
Q psy5727 156 ALVGALLLVLADSQQEARSVFAGVPSIGDNKPKNY 190 (303)
Q Consensus 156 sliG~Lll~~~~~~~~~~~~faglp~l~~~~~~~~ 190 (303)
.++||++++++|...++ ++.+..+|-+.++.
T Consensus 122 lIv~gi~li~~e~~~~~----~~~~~~~~l~~~da 152 (270)
T COG1968 122 LIVGGILLILAEKLNKK----PRLRDLDDLTLRDA 152 (270)
T ss_pred HHHHHHHHHHHHHhccc----cCcCChhhCCHHHH
Confidence 47899999999886553 44555555555553
No 23
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.87 E-value=1.5e+02 Score=28.41 Aligned_cols=58 Identities=19% Similarity=0.237 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5727 35 YLPTISRACLISTFLEDGLRMWFQ-WNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPL 103 (303)
Q Consensus 35 ~lp~iaR~~lvstF~ed~~~~~~~-w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l 103 (303)
.+-.++=+++..||+..-+.|=+. -.+. +|..|+. +.+.+.+-+++.....+|||.|+
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~~mPel------~~~~gy~-----~~l~im~~i~~~~~~~fkrk~Wl 324 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLGGIPGG------GWPFGFS-----IFCLLLVVLIGGVAWWLKRSKWL 324 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCc------CCcchHH-----HHHHHHHHHHHHHHHHHHhcccC
Confidence 344444456666777666666544 2221 3444433 23333344455566789998875
No 24
>PF08078 PsaX: PsaX family; InterPro: IPR012986 This family consists of the PsaX family of photosystem I (PSI) protein subunits. PSI is a large multi-subunit pigment protein complex embedded in the thylakoid membranes of green plants and cyanobacteria. PsaX is one of the 12 protein subunits found in PSI and these subunits are arranged as monomers or trimers within the membrane as shown by the structure of the trimeric complex from Synechococcus elongatus [].; PDB: 3PCQ_X 1JB0_X.
Probab=27.99 E-value=1.1e+02 Score=20.87 Aligned_cols=22 Identities=18% Similarity=0.483 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy5727 233 YKTKLSALILVLVLSFLNIYYN 254 (303)
Q Consensus 233 ~ktRlaA~lLa~~Ll~~~~~~h 254 (303)
|+|-++-++|++-.+++.+++|
T Consensus 14 frt~Wa~llLaINflVAayYFh 35 (37)
T PF08078_consen 14 FRTGWALLLLAINFLVAAYYFH 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHhe
Confidence 6777888888888888888888
No 25
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=27.29 E-value=2.1e+02 Score=26.13 Aligned_cols=22 Identities=14% Similarity=0.256 Sum_probs=15.2
Q ss_pred HhhhcChhhHHHHHHHHHHHHH
Q psy5727 68 LSWHCGYFLGSLFVMINLIGQL 89 (303)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~i~~l 89 (303)
+.|+.|+...+.++...++..+
T Consensus 198 ~~~~lP~~~~~~~i~~~~~~l~ 219 (290)
T PF09991_consen 198 REWRLPRWLIWLLIVALALSLV 219 (290)
T ss_pred HHHhCcHHHHHHHHHHHHHHHH
Confidence 3589999888777765554443
No 26
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=26.65 E-value=5e+02 Score=24.61 Aligned_cols=60 Identities=17% Similarity=0.265 Sum_probs=42.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy5727 188 KNYMQLAGRSLLAFMYITLLRFEVTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFL 249 (303)
Q Consensus 188 ~~~llL~GRvLL~lmFi~l~~f~~s~~~vl~~~vel~ggi~lilG~ktRlaA~lLa~~Ll~~ 249 (303)
.+.-...+|+-++==|+-+ ||..++..++++++++|++.++.-+..+.+...+++.....
T Consensus 93 ~~~S~i~ARv~lsRE~VdF--fE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~ 152 (237)
T PF13748_consen 93 LSVSTIAARVALSREFVDF--FEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFL 152 (237)
T ss_pred CChhHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444578899888777544 57778899999999999988887777666665555444333
No 27
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=22.39 E-value=3e+02 Score=25.88 Aligned_cols=60 Identities=22% Similarity=0.337 Sum_probs=32.5
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhc-cHHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5727 33 KAYLPTISRACLISTFLEDGLRMWFQ-WNEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPL 103 (303)
Q Consensus 33 k~~lp~iaR~~lvstF~ed~~~~~~~-w~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l 103 (303)
-+.|-.++=+++..||+..-+.|=+. -++ ..|..|+.. .+.+..-+++.....+|||.|+
T Consensus 258 mk~LTvvt~IflP~t~IaGiyGMNf~~mP~------l~~~~gy~~-----~l~~m~~i~~~~~~~fkrk~Wl 318 (318)
T TIGR00383 258 MKILTVVSTIFIPLTFIAGIYGMNFKFMPE------LNWKYGYPA-----VLIVMAVIALGPLIYFRRKGWL 318 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccCcc------ccchhHHHH-----HHHHHHHHHHHHHHHHHHcCCC
Confidence 34455566677778888777766443 121 124444332 2222223334466778999875
No 28
>PF02325 YGGT: YGGT family; InterPro: IPR003425 This family represents Ycf19. It is associated with phototrophic organisms and may therefore play a role in photosynthesis, despite its wider association with bacteria outside of the cyanobacteria. ; GO: 0016020 membrane
Probab=20.83 E-value=45 Score=25.22 Aligned_cols=29 Identities=7% Similarity=0.212 Sum_probs=24.5
Q ss_pred hHHHHHHHHhHHHHHHhhhhhhhhhHHHH
Q psy5727 14 NKDYIARAEIFADRVYQSTKAYLPTISRA 42 (303)
Q Consensus 14 ~~~~~~~~e~~~~~~~~~~k~~lp~iaR~ 42 (303)
.+++.+-...++|.+.++.|+++|.++++
T Consensus 26 ~~~~~~~i~~~TeP~l~p~r~~ip~~g~i 54 (75)
T PF02325_consen 26 YNPFVQFIYRITEPILRPFRRIIPPIGGI 54 (75)
T ss_pred cChHHHHHHHHhhHHHHHHHHHcCCCCCc
Confidence 45777888889999999999999988773
Done!