Query psy5727
Match_columns 303
No_of_seqs 208 out of 758
Neff 5.2
Searched_HMMs 29240
Date Sat Aug 17 01:02:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5727.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5727hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iub_A CORA, divalent cation t 27.7 1.7E+02 0.0059 27.0 7.9 58 35-103 305-363 (363)
2 1jb0_X Photosystem I subunit P 22.9 96 0.0033 19.9 3.4 22 233-254 11-32 (35)
3 4ev6_A Magnesium transport pro 16.8 1.2E+02 0.0039 27.9 4.1 57 36-103 282-339 (339)
4 1qey_A MNT-C, protein (regulat 8.0 1.6E+02 0.0056 18.4 1.4 18 19-36 2-19 (31)
5 1lyp_A CAP18; lipopolysacchari 7.7 3.6E+02 0.012 16.6 2.8 26 15-40 7-32 (32)
6 3o7q_A L-fucose-proton symport 7.7 1E+03 0.036 20.6 8.6 33 63-95 282-315 (438)
7 2wq1_A General control protein 7.3 4.5E+02 0.015 16.6 3.2 11 18-28 13-23 (33)
8 2r32_A GCN4-PII/tumor necrosis 6.8 3.3E+02 0.011 23.1 3.2 27 16-42 7-33 (166)
9 2k1a_A Integrin alpha-IIB; sin 6.5 2.9E+02 0.01 18.2 2.2 14 276-289 14-27 (42)
10 2l8s_A Integrin alpha-1; trans 6.2 3E+02 0.01 19.3 2.2 14 276-289 13-26 (54)
No 1
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=27.75 E-value=1.7e+02 Score=26.97 Aligned_cols=58 Identities=28% Similarity=0.452 Sum_probs=25.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhccHHHHHHHH-HhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5727 35 YLPTISRACLISTFLEDGLRMWFQWNEQREYMD-LSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPL 103 (303)
Q Consensus 35 ~lp~iaR~~lvstF~ed~~~~~~~w~~~~~y~~-~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l 103 (303)
.|-.++=+++..||+..-+.|=+. +|- ..|..|+..+. .+.+-+++...+.+|||.||
T Consensus 305 ~LTiit~IflP~T~IaGiyGMNf~------~mPel~~~~Gy~~~l-----~~m~~i~~~~~~~Fkrk~Wl 363 (363)
T 2iub_A 305 VLTIIATIFMPLTFIAGIYGMNFE------YMPELRWKWGYPVVL-----AVMGVIAVIMVVYFKKKKWL 363 (363)
T ss_dssp HHHHHHHHHHHHHHHTTSCC--------------------CHHHH-----HHHHHHHHHHHTTTTSCC--
T ss_pred HHHHHHHHHHHHHHHHhhhcccCC------CCCcccCcHHHHHHH-----HHHHHHHHHHHHHHHHcccC
Confidence 444555566677777766555443 222 24555554321 12223445567789999875
No 2
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=22.89 E-value=96 Score=19.93 Aligned_cols=22 Identities=18% Similarity=0.446 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q psy5727 233 YKTKLSALILVLVLSFLNIYYN 254 (303)
Q Consensus 233 ~ktRlaA~lLa~~Ll~~~~~~h 254 (303)
|+|-++-++|++-.+++.+++|
T Consensus 11 frt~WalllLaINflVAayYFh 32 (35)
T 1jb0_X 11 FRTFWAVLLLAINFLVAAYYFA 32 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888888888888888888
No 3
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=16.83 E-value=1.2e+02 Score=27.86 Aligned_cols=57 Identities=11% Similarity=0.197 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHhhhcChhhHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy5727 36 LPTISRACLISTFLEDGLRMWFQW-NEQREYMDLSWHCGYFLGSLFVMINLIGQLGGCILVLLQKRVPL 103 (303)
Q Consensus 36 lp~iaR~~lvstF~ed~~~~~~~w-~~~~~y~~~~~~~~~~~~~~~~~~~~i~~l~g~~lvl~~~~~~l 103 (303)
|-.++=+++..||+..-+.|=+.. ++ ..|..|++. ++.+.+-+++...+.+|||.||
T Consensus 282 LTiit~IflP~T~IaGiyGMNf~~mPe------l~~~~gy~~-----~l~~m~~~~~~~~~~fkrk~WL 339 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMNFSYLPL------ANNPQGFWL-----VMALMVVIIMIFVYIFRRSGWI 339 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCCCSCCTT------SSCTTHHHH-----HHHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHhhccCcCCCCCC------ccCchHHHH-----HHHHHHHHHHHHHHHHHHcCCC
Confidence 444455566677777766664431 21 124444332 2333344555667789999986
No 4
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=8.03 E-value=1.6e+02 Score=18.41 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=13.7
Q ss_pred HHHHhHHHHHHhhhhhhh
Q psy5727 19 ARAEIFADRVYQSTKAYL 36 (303)
Q Consensus 19 ~~~e~~~~~~~~~~k~~l 36 (303)
+.+|.+||+..+.+|...
T Consensus 2 DdaER~Ad~qse~vKk~v 19 (31)
T 1qey_A 2 NDAERLADEQSELVKKMV 19 (31)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 357888888888888763
No 5
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=7.73 E-value=3.6e+02 Score=16.59 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHhHHHHHHhhhhhhhhhHH
Q psy5727 15 KDYIARAEIFADRVYQSTKAYLPTIS 40 (303)
Q Consensus 15 ~~~~~~~e~~~~~~~~~~k~~lp~ia 40 (303)
++|-.++.|-...+-++++-.||.+|
T Consensus 7 rkfrnkikeklkkigqkiqgllpkla 32 (32)
T 1lyp_A 7 RKFRNKIKEKLKKIGQKIQGLLPKLA 32 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccC
Confidence 45666777777777888888888764
No 6
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=7.68 E-value=1e+03 Score=20.56 Aligned_cols=33 Identities=6% Similarity=-0.076 Sum_probs=22.4
Q ss_pred HHH-HHHhhhcChhhHHHHHHHHHHHHHHHHHHH
Q psy5727 63 REY-MDLSWHCGYFLGSLFVMINLIGQLGGCILV 95 (303)
Q Consensus 63 ~~y-~~~~~~~~~~~~~~~~~~~~i~~l~g~~lv 95 (303)
..| +++..|.+..-+..+..+..++..+|+.+.
T Consensus 282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 315 (438)
T 3o7q_A 282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTG 315 (438)
T ss_dssp HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 345 777668887777777777667777666543
No 7
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=7.28 E-value=4.5e+02 Score=16.64 Aligned_cols=11 Identities=0% Similarity=0.024 Sum_probs=4.2
Q ss_pred HHHHHhHHHHH
Q psy5727 18 IARAEIFADRV 28 (303)
Q Consensus 18 ~~~~e~~~~~~ 28 (303)
+++-.++.+++
T Consensus 13 l~~~~~le~EV 23 (33)
T 2wq1_A 13 TSKIYHNTNEI 23 (33)
T ss_dssp HHHHHHHHHHH
T ss_pred HHhhHHHHHHH
Confidence 33333333433
No 8
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=6.83 E-value=3.3e+02 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.060 Sum_probs=20.4
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhHHHH
Q psy5727 16 DYIARAEIFADRVYQSTKAYLPTISRA 42 (303)
Q Consensus 16 ~~~~~~e~~~~~~~~~~k~~lp~iaR~ 42 (303)
.-++++||-.|+++.++-+.=..+||.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (166)
T 2r32_A 7 SRMKQIEDKIEEILSKIYHIENEIARI 33 (166)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446778888888888887777778875
No 9
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=6.50 E-value=2.9e+02 Score=18.25 Aligned_cols=14 Identities=36% Similarity=0.821 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHh
Q psy5727 276 TLSVIGGLLMIVLR 289 (303)
Q Consensus 276 nLSiiGGLLll~~~ 289 (303)
-+|++||+++++..
T Consensus 14 i~s~l~GLllL~li 27 (42)
T 2k1a_A 14 LVGVLGGLLLLTIL 27 (42)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 47889999887643
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=6.21 E-value=3e+02 Score=19.31 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHh
Q psy5727 276 TLSVIGGLLMIVLR 289 (303)
Q Consensus 276 nLSiiGGLLll~~~ 289 (303)
-+|++||+++++..
T Consensus 13 i~svl~GLLLL~Li 26 (54)
T 2l8s_A 13 LLSAFAGLLLLMLL 26 (54)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 37899999887643
Done!