Query psy5727
Match_columns 303
No_of_seqs 208 out of 758
Neff 5.2
Searched_HMMs 13730
Date Sat Aug 17 01:02:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5727.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5727hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1je5a_ b.40.4.7 (A:) gp2.5 {B 8.8 83 0.0061 25.0 2.5 29 2-30 33-67 (197)
2 d1v54a_ f.24.1.1 (A:) Mitochon 6.2 8.2E+02 0.06 21.8 9.0 118 120-263 177-299 (514)
3 d1iaka2 d.19.1.1 (A:1-81) Clas 4.6 64 0.0047 22.8 -0.5 11 2-12 18-28 (82)
4 d1uvqa2 d.19.1.1 (A:2-84) Clas 4.6 65 0.0048 22.8 -0.5 11 2-12 19-29 (83)
5 d1jb0x_ f.23.20.1 (X:) Subunit 4.3 3.3E+02 0.024 15.0 3.4 21 233-253 5-25 (29)
6 d1wtya_ a.24.16.2 (A:) Probabl 4.3 2.3E+02 0.016 20.5 2.6 21 22-42 90-110 (116)
7 d1qmha1 c.47.2.1 (A:185-279) R 3.7 1.8E+02 0.013 20.3 1.4 20 19-38 74-93 (95)
8 d2oo2a1 a.8.11.1 (A:1-75) Hypo 3.6 1.9E+02 0.014 19.7 1.5 19 50-68 27-45 (75)
9 d1wh6a_ a.35.1.7 (A:) Homeobox 3.3 1.7E+02 0.012 21.2 0.9 9 2-10 4-12 (101)
10 d1or4a_ a.1.1.2 (A:) Heme-base 3.2 7.8E+02 0.056 17.6 5.2 28 16-44 48-75 (169)
No 1
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Probab=8.76 E-value=83 Score=25.02 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=22.1
Q ss_pred CCCccchhhhch------hHHHHHHHHhHHHHHHh
Q psy5727 2 NPSGQYSMNSVI------NKDYIARAEIFADRVYQ 30 (303)
Q Consensus 2 ~~~~~~~~~~~~------~~~~~~~~e~~~~~~~~ 30 (303)
||.|+|+....+ -.++++++|++.|+..+
T Consensus 33 ~~~g~Ykv~L~v~k~d~~a~~~i~~i~~~~e~a~~ 67 (197)
T d1je5a_ 33 NPRGVYKVDLTIPNKDPRCQRMVDEIVKCHEEAYA 67 (197)
T ss_dssp CCSCEEEEEEEEETTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEEEEccchHHHHHHHHHHHHHHHHHHH
Confidence 789999999654 14678888888887653
No 2
>d1v54a_ f.24.1.1 (A:) Mitochondrial cytochrome c oxidase, subunit I {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.20 E-value=8.2e+02 Score=21.76 Aligned_cols=118 Identities=18% Similarity=0.290 Sum_probs=68.7
Q ss_pred hhccchhhHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCcCCCCCchhhHHHHHHHHH
Q psy5727 120 LQKRVPLAVGALFFIVLLQTIAYKILLDFQFLMRNLALVGALLLVLADSQQEARSVFAGVPSIGDNKPKNYMQLAGRSLL 199 (303)
Q Consensus 120 ~~~~~~~~~~~L~~~~~~q~i~~~~~~~~~~~~rnlsliG~Lll~~~~~~~~~~~~faglp~l~~~~~~~~llL~GRvLL 199 (303)
+.+|.++-+...++..++..+..+. +.+++++++.|+.-. .+.|. |..+- ++ ++-
T Consensus 177 ~~~r~Plf~Ws~~vtsil~l~a~Pv------------La~a~~~ll~dr~~g-t~ff~--~~~Gg-dp---------~L~ 231 (514)
T d1v54a_ 177 SQYQTPLFVWSVMITAVLLLLSLPV------------LAAGITMLLTDRNLN-TTFFD--PAGGG-DP---------ILY 231 (514)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHSC-CCSSC--GGGTC-CH---------HHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhCC-CceeC--CCCCc-CH---------HHH
Confidence 5578899999898888888888887 789999999887521 22221 11000 00 011
Q ss_pred HHHHHHhhcchhhHHH--HHHHHHHHHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHhhcccCCchhH
Q psy5727 200 AFMYITLLRFEVTFLQ--VIQDLFGTALMVL---VTIGYKTKLSALILVLVLSFLNIYYNCWWVIPAEK 263 (303)
Q Consensus 200 ~lmFi~l~~f~~s~~~--vl~~~vel~ggi~---lilG~ktRlaA~lLa~~Ll~~~~~~h~FW~~~~~~ 263 (303)
-=+|..+.|+|..... ....+.|++.-.+ -+.|++....|......+... +..|+..+..-+.
T Consensus 232 qhLFWffgHPeVYi~iLPa~g~~s~ii~~~s~rk~~fg~~~~v~a~~~i~~ls~~-Vw~HHmft~g~~~ 299 (514)
T d1v54a_ 232 QHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMVWAMMSIGFLGFI-VWAHHMFTVGMDV 299 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCTTHHHHHHHHHHHHHHTTS-CGGGGCTTSCCCH
T ss_pred HHHHHhcCCceeeeeHHHHHHHHHHHHHHHcCCCcccChHHHHHHHHHHHHHhhh-hcccceeecCCcH
Confidence 1256666777754431 1223344433333 246888877777665555443 4558777764443
No 3
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=4.63 E-value=64 Score=22.79 Aligned_cols=11 Identities=27% Similarity=0.404 Sum_probs=7.8
Q ss_pred CCCccchhhhc
Q psy5727 2 NPSGQYSMNSV 12 (303)
Q Consensus 2 ~~~~~~~~~~~ 12 (303)
.||||||.+..
T Consensus 18 ~psGe~~~efD 28 (82)
T d1iaka2 18 GDIGQYTFEFD 28 (82)
T ss_dssp TTEEEEEEEET
T ss_pred CCCccEeeeeC
Confidence 57888887743
No 4
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=4.57 E-value=65 Score=22.79 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=7.7
Q ss_pred CCCccchhhhc
Q psy5727 2 NPSGQYSMNSV 12 (303)
Q Consensus 2 ~~~~~~~~~~~ 12 (303)
.||||||.+..
T Consensus 19 ~psGey~~~fD 29 (83)
T d1uvqa2 19 GPSGQYTHEFD 29 (83)
T ss_dssp TTEEEEEEEET
T ss_pred CCCccEeeccC
Confidence 47888887743
No 5
>d1jb0x_ f.23.20.1 (X:) Subunit PsaX of photosystem I reaction centre {Synechococcus elongatus [TaxId: 32046]}
Probab=4.34 E-value=3.3e+02 Score=14.96 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q psy5727 233 YKTKLSALILVLVLSFLNIYY 253 (303)
Q Consensus 233 ~ktRlaA~lLa~~Ll~~~~~~ 253 (303)
|+|-++-++|++-.+++..++
T Consensus 5 frt~wa~lllainflvaayyf 25 (29)
T d1jb0x_ 5 FRTFWAVLLLAINFLVAAYYF 25 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566677777766665555543
No 6
>d1wtya_ a.24.16.2 (A:) Probable nucleotidyltransferase subunit TTHA0048 {Thermus thermophilus [TaxId: 274]}
Probab=4.32 E-value=2.3e+02 Score=20.55 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.2
Q ss_pred HhHHHHHHhhhhhhhhhHHHH
Q psy5727 22 EIFADRVYQSTKAYLPTISRA 42 (303)
Q Consensus 22 e~~~~~~~~~~k~~lp~iaR~ 42 (303)
|+.++++.+.++.|+|.+..+
T Consensus 90 e~~A~~i~~~i~~~~~~~~~l 110 (116)
T d1wtya_ 90 EALAERIYAELPKALERFQEL 110 (116)
T ss_dssp HHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888898876544
No 7
>d1qmha1 c.47.2.1 (A:185-279) RNA 3'-terminal phosphate cyclase, RPTC, insert domain {Escherichia coli [TaxId: 562]}
Probab=3.75 E-value=1.8e+02 Score=20.34 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=16.4
Q ss_pred HHHHhHHHHHHhhhhhhhhh
Q psy5727 19 ARAEIFADRVYQSTKAYLPT 38 (303)
Q Consensus 19 ~~~e~~~~~~~~~~k~~lp~ 38 (303)
.++|+++++..+.++.||-+
T Consensus 74 ~~aE~Vg~~aa~~l~~~l~s 93 (95)
T d1qmha1 74 VSAEVVAAQLVKEVKRYLAS 93 (95)
T ss_dssp CCHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhc
Confidence 46899999999999888753
No 8
>d2oo2a1 a.8.11.1 (A:1-75) Hypothetical protein AF1782 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=3.60 E-value=1.9e+02 Score=19.74 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=10.5
Q ss_pred HHHHHHhhccHHHHHHHHH
Q psy5727 50 EDGLRMWFQWNEQREYMDL 68 (303)
Q Consensus 50 ed~~~~~~~w~~~~~y~~~ 68 (303)
+|-++|...+-+...|.-.
T Consensus 27 e~~l~ma~~Y~~Da~~fl~ 45 (75)
T d2oo2a1 27 EGFMRNIEAYISDSRYFLE 45 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666555544433
No 9
>d1wh6a_ a.35.1.7 (A:) Homeobox protein Cux-2, CUTL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.33 E-value=1.7e+02 Score=21.24 Aligned_cols=9 Identities=44% Similarity=0.804 Sum_probs=6.8
Q ss_pred CCCccchhh
Q psy5727 2 NPSGQYSMN 10 (303)
Q Consensus 2 ~~~~~~~~~ 10 (303)
.+||||...
T Consensus 4 gs~~q~~~~ 12 (101)
T d1wh6a_ 4 GSSGQYELY 12 (101)
T ss_dssp CSSCCTHHH
T ss_pred CccchHHHh
Confidence 368888866
No 10
>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor domain {Bacillus subtilis [TaxId: 1423]}
Probab=3.24 E-value=7.8e+02 Score=17.59 Aligned_cols=28 Identities=7% Similarity=-0.028 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHhhhhhhhhhHHHHHH
Q psy5727 16 DYIARAEIFADRVYQSTKAYLPTISRACL 44 (303)
Q Consensus 16 ~~~~~~e~~~~~~~~~~k~~lp~iaR~~l 44 (303)
-.-+.+|+++|+++..+.. -|..++++=
T Consensus 48 ~i~~~~~~i~d~FY~~l~~-~Pe~~~~f~ 75 (169)
T d1or4a_ 48 LIQENIVNIVDAFYKNLDH-ESSLMDIIN 75 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc-CHHHHHHHc
Confidence 3445566777777777765 377777663
Done!