RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5727
(303 letters)
>gnl|CDD|111019 pfam02077, SURF4, SURF4 family.
Length = 267
Score = 338 bits (869), Expect = e-117
Identities = 153/289 (52%), Positives = 213/289 (73%), Gaps = 24/289 (8%)
Query: 16 DYIARAEIFADRVYQSTKAYLPTISRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYF 75
+ ARAE +A+ + TK YLPT++R CL++TF EDG+RM FQW++Q YMD SW CGYF
Sbjct: 2 EVAARAEDYAETFARKTKPYLPTLARLCLVATFFEDGIRMLFQWSDQVNYMDYSWGCGYF 61
Query: 76 LGSLFVMINLIGQLGGCILVLLQKRVPLAVGALFFILGGCILVLLQKRVPLAVGALFFIV 135
++FV++NL+GQL G +LV+L+K+V A G LFFI V
Sbjct: 62 FATVFVIVNLVGQLIGSLLVMLRKKVTYACGVLFFI-----------------------V 98
Query: 136 LLQTIAYKILLDFQFLMRNLALVGALLLVLADSQQEARSVFAGVPSIGD-NKPKNYMQLA 194
+LQTIAY +L D +FL+RN++++G LLL+LA+S+ E +S+FAG+P++G+ NKPK+YM LA
Sbjct: 99 ILQTIAYGLLTDLKFLLRNISVIGGLLLLLAESRIEKKSLFAGLPTMGEENKPKSYMLLA 158
Query: 195 GRSLLAFMYITLLRFEVTFLQVIQDLFGTALMVLVTIGYKTKLSALILVLVLSFLNIYYN 254
GR LL M+I+LL FE+++ +++ + GTALM+LV IG+KTKL+A++LVL L NIY N
Sbjct: 159 GRVLLVLMFISLLHFEMSWTRILLCIIGTALMILVAIGFKTKLAAIMLVLWLFAYNIYLN 218
Query: 255 CWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMIVLRGPGSVSMDQHKKNW 303
+W IP++K +RDFLKYDFFQTLSVIGGLL++V GPG VS+D+ KK W
Sbjct: 219 AFWTIPSDKPLRDFLKYDFFQTLSVIGGLLLVVNTGPGGVSVDEKKKIW 267
>gnl|CDD|225168 COG2259, COG2259, Predicted membrane protein [Function unknown].
Length = 142
Score = 33.9 bits (78), Expect = 0.040
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 227 VLVTIGYKTKLSALILVLVLSFLNIYYNCWWVIPAEKAMRDFLKYDFFQTLSVIGGLLMI 286
+L+ +G T+L+AL+L + + + +W F + L +IGGLL++
Sbjct: 70 LLLLLGLFTRLAALVLAVFMLVAIFAVHAFWGFFGLAN------NGFEKNLLLIGGLLLL 123
Query: 287 VLRGPGSVSMDQ 298
+ G G +S+D
Sbjct: 124 AITGAGRLSLDA 135
>gnl|CDD|227812 COG5525, COG5525, Phage terminase, large subunit GpA [Replication,
recombination and repair].
Length = 611
Score = 30.1 bits (68), Expect = 1.6
Identities = 7/43 (16%), Positives = 11/43 (25%), Gaps = 4/43 (9%)
Query: 37 PTISRACLISTFLEDGLRMWFQW----NEQREYMDLSWHCGYF 75
PTI I G + F + + + G
Sbjct: 206 PTIPGTTTIERAYNAGDQRRFYVPCPHCGEEQQLKFGEKSGPR 248
>gnl|CDD|131967 TIGR02921, PEP_integral, PEP-CTERM family integral membrane
protein. Members of this protein family, found in three
different species so far, have a PEP-CTERM sequence at
the carboxyl-terminus (see model TIGR02595), but are
unusual among PEP-CTERM proteins in having multiple
predicted transmembrane segments. The function is
unknown. It is proposed that a member of the EpsH
family, to be designated exosortase (see TIGR02602),
recognizes and cleaves PEP-CTERM proteins in a manner
analogous to the cleavage of LPXTG proteins by sortase
(see Haft, et al., 2006).
Length = 952
Score = 29.6 bits (66), Expect = 2.2
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 115 CILVLLQKRVPLAVGALFFIVLLQTIAYKILLD-FQFLMRNLALVGALLLVLADSQQEAR 173
+L +P A G F LL+ I ++ L D F +++ + A + L ++ A
Sbjct: 155 AAALLAFFAIPAAAG---FFELLEEIEFEHLGDIFNYILFHTAFICGLFIISMWLIVLAF 211
Query: 174 S--VFAGVPSI 182
S +F +P
Sbjct: 212 SATLFIALPFA 222
>gnl|CDD|219266 pfam07006, DUF1310, Protein of unknown function (DUF1310). This
family consists of several hypothetical proteins of
around 125 residues in length. Members of this family
seem to be specific to Listeria and Streptococcus
species. The function of this family is unknown.
Length = 122
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 277 LSVIGGLLMIVLRGPGSVSMDQHKKN 302
+ +I +L+ +L G MD+HK+
Sbjct: 4 IILILIILLTILGLGGKFYMDEHKEK 29
>gnl|CDD|205703 pfam13525, YfiO, Outer membrane lipoprotein. This outer membrane
lipoprotein carries a TPR-like region towards its
N-terminal. YfiO in E.coli is one of three outer
membrane lipoproteins that form a multicomponent YaeT
complex in the outer membrane of Gram-negative bacteria
that is involved in the targeting and folding of
beta-barrel outer membrane proteins. YfiO is the only
essential lipoprotein component of the complex. It is
required for the proper assembly and/or targeting of
outer membrane proteins to the outer membrane. Through
its interactions with NlpB it maintains the functional
integrity of the YaeT complex.
Length = 203
Score = 27.6 bits (62), Expect = 7.5
Identities = 10/44 (22%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 3 PSGQYSMNS----VINKDYIARAEIFADRVYQSTKAYLPTISRA 42
P +Y+ ++ + ++ +AR E++ Y AY+ +RA
Sbjct: 121 PDSEYAPDAKARMIYLRNRLARHELYVADYYLKRGAYVAAANRA 164
>gnl|CDD|219656 pfam07947, YhhN, YhhN-like protein. The members of this family are
similar to the hypothetical protein yhhN expressed by E.
coli. Many of the members of this family are annotated
as being possible transmembrane proteins, and in fact
they all have a high proportion of hydrophobic residues.
Length = 182
Score = 27.2 bits (61), Expect = 8.8
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 85 LIGQLGGCILVLLQKR----VPLAVGALFFILGGCILVLLQKRVPLAVGALFFIVLLQTI 140
L+ L + L ++ L +L + L V +I+++ +
Sbjct: 60 LLAHLLYIVAFLRRQLSSPLRWPLALLLLVAGAALFALLWPRLGELKVPVAAYILVISAM 119
Query: 141 AYKILLDFQF--LMRNLALVGALLLVLADS 168
A+ L + L LA +GALL VL+D
Sbjct: 120 AWAALERYLLSTLAGLLAALGALLFVLSDL 149
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 27.4 bits (61), Expect = 9.3
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 7/25 (28%)
Query: 124 VPLAVGA----LFFIVLLQTIAYKI 144
VP+AVGA L IVL IAY I
Sbjct: 272 VPIAVGAALAGLILIVL---IAYLI 293
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.144 0.440
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,734,267
Number of extensions: 1592328
Number of successful extensions: 2417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 161
Length of query: 303
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 207
Effective length of database: 6,679,618
Effective search space: 1382680926
Effective search space used: 1382680926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 59 (26.4 bits)