RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5727
         (303 letters)



>d1zq7a1 d.309.1.1 (A:1-199) Hypothetical protein MM0484
          {Methanosarcina mazei [TaxId: 2209]}
          Length = 199

 Score = 25.2 bits (55), Expect = 7.8
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)

Query: 30 QSTKAYLPTISRACLISTFLEDGLRMWFQWNEQREYMDLSWHCGYFLGSLFVMINLIGQL 89
          ++       ++R   I  FL  G       +          + G     +FV +   G L
Sbjct: 4  ETEGRAAVKLARKT-IEIFLSKGKSPRPDASGVELSPVFEEYRG-----VFVTLTEGGLL 57

Query: 90 GGCI 93
           GCI
Sbjct: 58 RGCI 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.144    0.440 

Gapped
Lambda     K      H
   0.267   0.0446    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,094,825
Number of extensions: 47629
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 6
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.9 bits)