BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy573
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGT 80
FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R+R+VDG
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 84
P V + A L C G PEPT+ W K+G P+ + + S R++ DG +
Sbjct: 15 HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECS-V 142
Q ++ D G Y CV KN G S A L++ V R PKDT V+ G + EC
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 143 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
G T+ W + G + + R+ ++ +L +S+V D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 194 G-KISASATLTVQSK 207
G + S+ A L VQ K
Sbjct: 194 GTRESSYAKLIVQVK 208
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P II P D V C V G T+ W + G + + S +Q D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQFKDGA 66
Query: 179 L-----------EDGGEYVCEAENAVGK-ISASATLTV 204
L +DGGEY C A+N VG+ +S A+L +
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 69/98 (70%), Gaps = 6/98 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGT 80
FRV+PK RVA G+TALLECGPP+G PEPTL+W K+G P+D F S R+R+VDG
Sbjct: 111 FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG 170
Query: 81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
NL I + D+G Y+C+ +N+ GTRES+ A L V VK
Sbjct: 171 NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVK 208
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 90/195 (46%), Gaps = 18/195 (9%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI--DFENSKRLRLVDGTNL---AI 84
P V + A L C G PEPT+ W K+G P+ + + S R++ DG +
Sbjct: 15 HPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTM 73
Query: 85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR-GPKDTTVSAGSIIVFECS-V 142
Q ++ D G Y CV KN G S A L++ V R PKDT V+ G + EC
Sbjct: 74 QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133
Query: 143 GGDAVLTVHWKRLGSAMPE---------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
G T+ W + G + + R+ ++ +L +S+V D G Y C A+N V
Sbjct: 134 KGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLV 193
Query: 194 G-KISASATLTVQSK 207
G + S+ A L VQ K
Sbjct: 194 GTRESSYAKLIVQVK 208
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P II P D V C V G T+ W + G + + S +Q D
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKK---SHRVQFKDGA 66
Query: 179 L-----------EDGGEYVCEAENAVGK-ISASATLTV 204
L +DGGEY C A+N VG+ +S A+L +
Sbjct: 67 LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 90.5 bits (223), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/179 (33%), Positives = 83/179 (46%), Gaps = 4/179 (2%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
F +P + G A+LEC G+P P+ W + I SK+ L+ G+NL I +
Sbjct: 224 FLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLR-SKKYSLLGGSNLLISN 281
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
D G Y CVV S A L VLV P+ + P + I FEC+V G
Sbjct: 282 VTDDDSGTYTCVV-TYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKP 340
Query: 147 VLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
V TV+W + G +P D ++ +L++ V D G Y C AEN G +SA L V
Sbjct: 341 VPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 84/187 (44%), Gaps = 10/187 (5%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID-FENSKRLRLVDGTNLAIQ 85
F Q +S GDT LL+C G P PT+ W+KN ++ R+ ++ L I
Sbjct: 124 FLSQTESITAFMGDTVLLKC-EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQIS 182
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSAGSIIVFE 139
+ D G Y+C +N A TR +A +R+L P Y ++ P + G V E
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE 242
Query: 140 CSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197
C V G + W R + + S+L +L +S+V +D G Y C IS
Sbjct: 243 CCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENIS 302
Query: 198 ASATLTV 204
ASA LTV
Sbjct: 303 ASAELTV 309
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 10/175 (5%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
F +P G LL C P + WKK+G + R + + +L IQ+
Sbjct: 24 FVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQN 83
Query: 87 -----SRKTDDGRYQCVVK-NVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFEC 140
K D+G YQC +G+ S A + V + + T G ++ +C
Sbjct: 84 ILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKC 143
Query: 141 SVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN 191
V GD + T+HW++ L + R+ VLPS +LQ+S ++ D G Y C A N
Sbjct: 144 EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARN 198
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 90.1 bits (222), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 2/98 (2%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
FR P VA G+ A++EC PPRGHPEPT+ WKK+G P+D + +R+ + G L I
Sbjct: 114 FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLD-DKDERI-TIRGGKLMITY 171
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 124
+RK+D G+Y CV N+ G RES A L VL +P ++
Sbjct: 172 TRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVKA 209
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 86/187 (45%), Gaps = 13/187 (6%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT--NLA 83
P V+ G+ A L C G P PT+ W K G + D S R+ L G+ L
Sbjct: 15 HPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 84 IQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV-LVKPYIIRGPKDTTVSAGSIIVFEC 140
I RK+ D+G Y CV +N G S DA L V +++ + P D V+ G V EC
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMEC 133
Query: 141 SVG-GDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KIS 197
G T+ WK+ GS + + D + L ++ R D G+YVC N VG + S
Sbjct: 134 QPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERES 193
Query: 198 ASATLTV 204
A LTV
Sbjct: 194 EVAELTV 200
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM------PEDRMSVLPSRSL 172
P I+ P D VS G C G T+ W + G + P +LPS SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 173 QLSDV-----RLEDGGEYVCEAENAVGK-ISASATLTV 204
+ D G YVC A N +G+ +S A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 110
G PEP + W +NG I+ EN K + T L +++ +D G Y C N AG E
Sbjct: 30 GSPEPAISWFRNGKLIE-ENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEK-Q 87
Query: 111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPED 162
A L+V V+P+II+ +TT G + + C G+ + + WKR G +
Sbjct: 88 AFLQVFVQPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDG 146
Query: 163 RMSV---LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
R+ V S SL + DV+L D G Y CEA + +G S L ++
Sbjct: 147 RIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGE 184
+ T G + F C G + W R G + E+ +L + +L+ ++ DGG
Sbjct: 13 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 72
Query: 185 YVCEAENAVGKISASATLTV 204
YVC A N G+ A L V
Sbjct: 73 YVCRATNKAGEDEKQAFLQV 92
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 52 HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTRESTD 110
+P+P + W +N I +++ +G L I +DDG Y C N V G ES
Sbjct: 34 YPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCG 93
Query: 111 AVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPS 169
A L+V +KP I R P + + G V C+ G+ +V W + SA+ E+ R++VL S
Sbjct: 94 A-LQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVG 194
SL++ +V+ ED G+Y C A+N++G
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLG 177
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P + ++ G A+L C G+P+P++ W K G ENS R+ +++ +L I + +K
Sbjct: 107 PINVKIIEGLKAVLPCTT-MGNPKPSVSWIK-GDSALRENS-RIAVLESGSLRIHNVQKE 163
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLV 117
D G+Y+CV KN GT S L V V
Sbjct: 164 DAGQYRCVAKNSLGTAYSKLVKLEVEV 190
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 89/181 (49%), Gaps = 9/181 (4%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK---PYIIRGPKDTTVSAGSIIVFECSVGGDA 146
TD G+Y+CV N AG R S+ A L V V+ P P + G + C G
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSP 233
Query: 147 VLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
+ V W + + PED M V L+L+DV+ D Y C A +++G I A A +TV+
Sbjct: 234 MPYVKWMQGAEDLTPEDDMPVG-RNVLELTDVK--DSANYTCVAMSSLGVIEAVAQITVK 290
Query: 206 S 206
S
Sbjct: 291 S 291
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82 LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
A N+ G + S+ A L V+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P I+ PKD +G + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
++ D Y C A+N+VG+I+ A LTV
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
+P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 12 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 70
Query: 90 T----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVF 138
DD Y+CV +N G S DA L + P I +GP + G ++
Sbjct: 71 VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130
Query: 139 ECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
C G+ ++W + + M R S L LQ+ + R ED G+Y C AEN++G
Sbjct: 131 TCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENSMGTE 189
Query: 197 SASATLTVQSKYLKV 211
+ AT + Y+KV
Sbjct: 190 HSKAT----NLYVKV 200
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P ++ + G T L+ C G+P P + W KN +D N R L DG L I++SR+
Sbjct: 117 PGTRVIEVGHTVLMTC-KAIGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF-LQIENSREE 173
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLVK 118
D G+Y+CV +N GT S L V V+
Sbjct: 174 DQGKYECVAENSMGTEHSKATNLYVKVR 201
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
P IIR P++ V G + F C+ GD ++ W++ G + + R +VL + +S
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISI 65
Query: 177 VRLE------DGGEYVCEAENAVG-KISASATLTV 204
+R+E D Y C AEN VG +SA ATLT+
Sbjct: 66 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 100
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 19/195 (9%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
+P++Q V G A C RG P P++VW+KNG + S+ L ++I
Sbjct: 14 KPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEP 72
Query: 90 T----DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVF 138
DD Y+CV +N G S DA L + P I +GP + G ++
Sbjct: 73 VRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 132
Query: 139 ECSVGGDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
C G+ ++W + + M R S L LQ+ + R ED G+Y C AEN++G
Sbjct: 133 TCKAIGNPTPNIYWIKNQTKVDMSNPRYS-LKDGFLQIENSREEDQGKYECVAENSMGTE 191
Query: 197 SASATLTVQSKYLKV 211
+ AT + Y+KV
Sbjct: 192 HSKAT----NLYVKV 202
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P ++ + G T L+ C G+P P + W KN +D N R L DG L I++SR+
Sbjct: 119 PGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMSNP-RYSLKDGF-LQIENSREE 175
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLVK 118
D G+Y+CV +N GT S L V V+
Sbjct: 176 DQGKYECVAENSMGTEHSKATNLYVKVR 203
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 10/95 (10%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
P IIR P++ V G + F C+ GD ++ W++ G + + R +VL + +S
Sbjct: 9 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL-EQPGGISI 67
Query: 177 VRLE------DGGEYVCEAENAVG-KISASATLTV 204
+R+E D Y C AEN VG +SA ATLT+
Sbjct: 68 LRIEPVRAGRDDAPYECVAENGVGDAVSADATLTI 102
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
+++ K V A T +C P G P+PTL W KNG +F+ R+ ++ T I
Sbjct: 21 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 77
Query: 85 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ GS + F
Sbjct: 78 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 137
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
C V D + W + GS + D + + L L +V ED
Sbjct: 138 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 197
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 198 GEYTCLAGNSIGLSHHSAWLTV 219
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
+++ K V A T +C P G P+PTL W KNG +F+ R+ ++ T I
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPQPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 85 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ GS + F
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
C V D + W + GS + D + + L L +V ED
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 13/184 (7%)
Query: 35 RVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTD 91
RV G +L C PP P+ + W N P+ KR R V TN L I + +D
Sbjct: 19 RVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKR-RFVSQTNGNLYIANVEASD 77
Query: 92 DGRYQCVVKNVAGTRESTDAVLRVL------VKPY---IIRGPKDTTVSAGSIIVFECSV 142
G Y C V + + T+ + ++ KPY I+ KD G + EC
Sbjct: 78 KGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA 137
Query: 143 GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
G+ V + W+++ MP L++ +++LED G Y CEAEN GK A +
Sbjct: 138 LGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
Query: 203 TVQS 206
VQ+
Sbjct: 198 YVQA 201
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/202 (31%), Positives = 90/202 (44%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAI 84
+++ K V A T +C P G P PTL W KNG +F+ R+ ++ T I
Sbjct: 20 KMEKKLHAVPAAKTVKFKC-PSSGTPNPTLRWLKNGK--EFKPDHRIGGYKVRYATWSII 76
Query: 85 QDSR-KTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
DS +D G Y C+V+N G+ T D V R +P + G P + TV+ GS + F
Sbjct: 77 MDSVVPSDKGNYTCIVENEYGSINHTYQLDVVERSPHRPILQAGLPANKTVALGSNVEFM 136
Query: 140 CSVGGDAVLTVHWKRL----GSAMPEDRMSVL-------------PSRSLQLSDVRLEDG 182
C V D + W + GS + D + + L L +V ED
Sbjct: 137 CKVYSDPQPHIQWLKHIEVNGSKIGPDNLPYVQILKTAGVNTTDKEMEVLHLRNVSFEDA 196
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 197 GEYTCLAGNSIGLSHHSAWLTV 218
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P G LEC G+P P + W+K +D S + + T L I
Sbjct: 213 PAETYALVGQQVTLECFA-FGNPVPRIKWRK----VDGSLSPQWTTAEPT-LQIPSVSFE 266
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
D+G Y+C +N G R++ + V +P ++ DT GS + + C+ G TV
Sbjct: 267 DEGTYECEAENSKG-RDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTV 325
Query: 151 HWKRLGSAMP-EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
W R G + ++R+ VL + L+ S + LED G Y C AEN G I ASA L VQ+
Sbjct: 326 RWLRNGEPLASQNRVEVL-AGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQA 381
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 22/191 (11%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDDGRYQ 96
G +L C PP +P + W N P +F + V T NL I + +D G Y
Sbjct: 115 GWGVMLPCNPPAHYPGLSYRWLLNEFP-NFIPTDGRHFVSQTTGNLYIARTNASDLGNYS 173
Query: 97 CVVKNVAGTRESTDAVL-------------RVLVKPYIIRGPKDTTVSAGSIIVFECSVG 143
C+ + ST +V R+ R P +T G + EC
Sbjct: 174 CLA--TSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAF 231
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203
G+ V + W+++ ++ + P+ LQ+ V ED G Y CEAEN+ G+ + +
Sbjct: 232 GNPVPRIKWRKVDGSLSPQWTTAEPT--LQIPSVSFEDEGTYECEAENSKGRDTVQGRII 289
Query: 204 VQSK--YLKVI 212
VQ++ +LKVI
Sbjct: 290 VQAQPEWLKVI 300
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 40 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 99
+ LL C R P T WK NG + E R +LV G + + ++ D G YQC+
Sbjct: 22 EQVLLACRA-RASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 100 KNVAGTRESTDAVLRV 115
N GT S +A+LR
Sbjct: 81 SNPVGTVVSREAILRF 96
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPSRSLQL 174
+P + P+++T ++ C T WK G+ M P R ++ + +
Sbjct: 9 QPLSVLFPEESTEEQ---VLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIM 65
Query: 175 SDVRLEDGGEYVCEAENAVGKI 196
+ + +D G Y C A N VG +
Sbjct: 66 NPTKAQDAGVYQCLASNPVGTV 87
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 23 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 139
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGE 184
C V DA + W ++ GS D + L + L L +V D GE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 185 YVCEAENAVGKISASATLTVQSK 207
Y+C+ N +G+ + SA LTV K
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPK 222
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 95
V G +L CGPP E + W N +P +++++R + NL I K+D G Y
Sbjct: 113 VRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNY 171
Query: 96 QCVVKNVAGTRE----STDAVLR---VL--VKPYI-IRGPKDTTVSAGSIIVFECSVGGD 145
CVV N + T +LR V+ +P I ++ P+ G+ + EC G+
Sbjct: 172 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 231
Query: 146 AVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
V T+ W+R G + + L++ + + ED G Y C AEN+ GK A LT
Sbjct: 232 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 291
Query: 205 --QSKYLKVIH 213
Q ++++I+
Sbjct: 292 YAQPNWVQIIN 302
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRK 89
P++ G T LEC G+P PT++W++ +G PI K R L I + ++
Sbjct: 211 PETVPAEKGTTVKLECFA-LGNPVPTILWRRADGKPIA---RKARRHKSNGILEIPNFQQ 266
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT 149
D G Y+CV +N G + L +P ++ D V+ + +EC G T
Sbjct: 267 EDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 325
Query: 150 VHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
W + G + DR+ + +L ++ V L D G Y C AEN G I +SA L+V
Sbjct: 326 YRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 380
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109
+G+P+P + WK NG +D R +VDG+ L ++ D G YQC+ N GT S
Sbjct: 32 KGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 91
Query: 110 DAVLRV-LVKPYIIRGPKDTTVSAGSIIVFECSV---GGDAVLTVHWKRLGSAMPEDRMS 165
+A L+ ++ + R +V G +V C G+ + S R
Sbjct: 92 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 151
Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAV 193
+ +L ++ V D G Y C N V
Sbjct: 152 SQETGNLYIAKVEKSDVGNYTCVVTNTV 179
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192
+ C V G+ + WK G+ + + R SV+ L + + +D G Y C A N+
Sbjct: 25 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 84
Query: 193 VGKISASATLTVQSKYLK 210
G I S +Q YL+
Sbjct: 85 FGTI-VSREAKLQFAYLE 101
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 90/203 (44%), Gaps = 26/203 (12%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 23 KMEKRLHAVPAFNTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 79
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 80 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 139
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGE 184
C V DA + W ++ GS D + L + L L +V D GE
Sbjct: 140 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGE 199
Query: 185 YVCEAENAVGKISASATLTVQSK 207
Y+C+ N +G+ + SA LTV K
Sbjct: 200 YICKVSNYIGQANQSAWLTVLPK 222
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRY 95
V G +L CGPP E + W N +P +++++R + NL I K+D G Y
Sbjct: 114 VRRGQGMVLLCGPPPHSGELSYAWIFNEYP-SYQDNRRFVSQETGNLYIAKVEKSDVGNY 172
Query: 96 QCVVKNVAGTRE----STDAVLR---VL--VKPYI-IRGPKDTTVSAGSIIVFECSVGGD 145
CVV N + T +LR V+ +P I ++ P+ G+ + EC G+
Sbjct: 173 TCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGN 232
Query: 146 AVLTVHWKRL-GSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
V T+ W+R G + + L++ + + ED G Y C AEN+ GK A LT
Sbjct: 233 PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTF 292
Query: 205 --QSKYLKVIH 213
Q ++++I+
Sbjct: 293 YAQPNWVQIIN 303
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 8/176 (4%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRK 89
P++ G T LEC G+P PT++W++ +G PI K R L I + ++
Sbjct: 212 PETVPAEKGTTVKLECFA-LGNPVPTILWRRADGKPIA---RKARRHKSNGILEIPNFQQ 267
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLT 149
D G Y+CV +N G + L +P ++ D V+ + +EC G T
Sbjct: 268 EDAGSYECVAENSRG-KNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPT 326
Query: 150 VHWKRLGSAM-PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
W + G + DR+ + +L ++ V L D G Y C AEN G I +SA L+V
Sbjct: 327 YRWLKNGDPLLTRDRIQI-EQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 63/148 (42%), Gaps = 4/148 (2%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109
+G+P+P + WK NG +D R +VDG+ L ++ D G YQC+ N GT S
Sbjct: 33 KGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSR 92
Query: 110 DAVLRV-LVKPYIIRGPKDTTVSAGSIIVFECSV---GGDAVLTVHWKRLGSAMPEDRMS 165
+A L+ ++ + R +V G +V C G+ + S R
Sbjct: 93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV 152
Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAV 193
+ +L ++ V D G Y C N V
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTV 180
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192
+ C V G+ + WK G+ + + R SV+ L + + +D G Y C A N+
Sbjct: 26 VKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNS 85
Query: 193 VGKISASATLTVQSKYLK 210
G I S +Q YL+
Sbjct: 86 FGTI-VSREAKLQFAYLE 102
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P G LEC G+P P + W+K +D + + L L IQ+
Sbjct: 214 PADTYALTGQMVTLECFA-FGNPVPQIKWRK----LDGSQTSKW-LSSEPLLHIQNVDFE 267
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
D+G Y+C +N+ G R++ + + +P + DT GS + + C G V
Sbjct: 268 DEGTYECEAENIKG-RDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV 326
Query: 151 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
W R G + + L+ S + LED G Y C AEN G + ASA LTVQ+
Sbjct: 327 RWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 82/193 (42%), Gaps = 18/193 (9%)
Query: 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAIQDSRKTDD 92
++ G + C PP +P + W N P +F + R V T NL I + +D
Sbjct: 112 KITEGWGVMFTCSPPPHYPALSYRWLLNEFP-NFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 93 GRYQC--------VVKNVAG--TRESTDAVLRVLVKPYI-IRGPKDTTVSAGSIIVFECS 141
G Y C + K+V ++ S A P I + P DT G ++ EC
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 142 VGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201
G+ V + W++L + +S P L + +V ED G Y CEAEN G+ +
Sbjct: 231 AFGNPVPQIKWRKLDGSQTSKWLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGR 288
Query: 202 LTV--QSKYLKVI 212
+ + Q +L VI
Sbjct: 289 IIIHAQPDWLDVI 301
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 6/156 (3%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109
R +P T WK NG + R RLV G + + D G YQCV N GT S
Sbjct: 32 RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSR 91
Query: 110 DAVLRV-LVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AVLTVHW--KRLGSAMPED--R 163
+A LR ++ + ++ G ++F CS L+ W + +P D R
Sbjct: 92 EASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRR 151
Query: 164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
+ +L ++ D G Y C A + + I+ S
Sbjct: 152 FVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 13 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 69
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFV 129
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 130 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 189
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 190 GEYTCLAGNSIGISFHSAWLTV 211
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 15 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERWPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDGGE 184
V A + + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 23 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 82
Query: 185 YVCEAENAVGKISASATLTVQSKY 208
Y C EN G I+ + L V ++
Sbjct: 83 YTCVVENEYGSINHTYHLDVVERW 106
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 84/195 (43%), Gaps = 26/195 (13%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LAIQDSRKTD 91
V A +T C P G+P PT W KNG +F+ R+ N L + +D
Sbjct: 30 VPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLIXESVVPSD 86
Query: 92 DGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFECSVGGDAV 147
G Y CVV+N G+ T D V R +P + G P + + G + F C V DA
Sbjct: 87 KGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ 146
Query: 148 LTVHW----KRLGSAMPEDRMSVLP-----------SRSLQLSDVRLEDGGEYVCEAENA 192
+ W ++ GS D + L + L L +V D GEY+C+ N
Sbjct: 147 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 206
Query: 193 VGKISASATLTVQSK 207
+G+ + SA LTV K
Sbjct: 207 IGQANQSAWLTVLPK 221
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 14 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 70
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 130
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 131 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 190
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 191 GEYTCLAGNSIGISFHSAWLTV 212
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 89/202 (44%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLA 83
R+ K V A +T C P G+P P++ W KNG +F R+ + +L
Sbjct: 127 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 183
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D + R +P + G P + T GS + F
Sbjct: 184 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 243
Query: 140 CSVGGDAVLTVHWKRL----GSAMPED---RMSVLPSRS----------LQLSDVRLEDG 182
C V DA + W + GS + D ++VL + L L +V ED
Sbjct: 244 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDA 303
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA L V
Sbjct: 304 GEYTCLAGNSIGFSHHSAWLVV 325
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 73/197 (37%), Gaps = 32/197 (16%)
Query: 37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQ 96
+GD L C PP G P VW K+G S+R+ LV L + ++ D G Y
Sbjct: 21 GSGDAVELSCPPPGGGPMGPTVWVKDG--TGLVPSERV-LVGPQRLQVLNASHEDSGAYS 77
Query: 97 C---VVKNV--AGTRESTDAVLRVLV---------------KPYIIR----GPKDTTVSA 132
C + + V + TDA PY R K V A
Sbjct: 78 CRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPA 137
Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSR----SLQLSDVRLEDGGEYVC 187
+ + F C G+ ++ W + G E R+ + R SL + V D G Y C
Sbjct: 138 ANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTC 197
Query: 188 EAENAVGKISASATLTV 204
EN G I + TL V
Sbjct: 198 VVENKFGSIRQTYTLDV 214
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
Q + + + AG+T ++ C P G+P ++VW+++ + N K+ +GT + R
Sbjct: 532 QMEKKAIVAGETLIVTC-PVAGYPIDSIVWERDNRALPI-NRKQKVFPNGTLIIENVERN 589
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSAGSIIVFECSV-GGDAV 147
+D Y CV KN G ++V+V P II ++ G + CSV GGD
Sbjct: 590 SDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLP 649
Query: 148 LTVHWKRLGSAMPEDRMSVLPSR------SLQLSDVRLEDGGEYVCEAENAVGKISASAT 201
L + W G A+ ED + + SR L + V G + C A N G +
Sbjct: 650 LNIDWTLDGQAISED-LGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708
Query: 202 LTV 204
L V
Sbjct: 709 LNV 711
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 16/184 (8%)
Query: 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-----VDG---TNLA 83
+ + + G + L+C G+P P + W+ +G I N+ R ++ V+G + L
Sbjct: 437 QEETMEPGPSVFLKC-VAGGNPTPEISWELDGKKI--ANNDRYQVGQYVTVNGDVVSYLN 493
Query: 84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVG 143
I D G Y+C+ K+ G E + A L V PYI R + + AG ++ C V
Sbjct: 494 ITSVHANDGGLYKCIAKSKVGVAEHS-AKLNVYGLPYI-RQMEKKAIVAGETLIVTCPVA 551
Query: 144 GDAVLTVHWKRLGSAMPEDR-MSVLPSRSLQLSDV-RLEDGGEYVCEAENAVGKISASAT 201
G + ++ W+R A+P +R V P+ +L + +V R D Y C A+N G SA +
Sbjct: 552 GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEG-YSARGS 610
Query: 202 LTVQ 205
L VQ
Sbjct: 611 LEVQ 614
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 76/178 (42%), Gaps = 12/178 (6%)
Query: 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKT 90
+ +G + + P +G+P P W K + + R++ V GT L I+D+
Sbjct: 258 KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVE 316
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
D G+Y CVV N G ES + VL V P TV G VF C G+ + TV
Sbjct: 317 DSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV 375
Query: 151 HWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY 208
W + G A+ L++ V+ ED G Y C N ASA L + ++
Sbjct: 376 SWMKDGKAIGHSE------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF 427
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 54/191 (28%), Positives = 82/191 (42%), Gaps = 27/191 (14%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
++ P +Q V G A+ C G+P T+ W K+G I S L I+
Sbjct: 347 KIDPPTQTVDFGRPAVFTC-QYTGNPIKTVSWMKDGKAIGHSESV---------LRIESV 396
Query: 88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYIIRGPKDTTVSAGSIIVFECSV 142
+K D G YQC V+N RES +A + + P I + ++ T+ G + +C
Sbjct: 397 KKEDKGMYQCFVRN---DRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453
Query: 143 GGDAVLTVHWKRLGSAMPE-DRMSVLPSRS--------LQLSDVRLEDGGEYVCEAENAV 193
GG+ + W+ G + DR V + L ++ V DGG Y C A++ V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513
Query: 194 GKISASATLTV 204
G SA L V
Sbjct: 514 GVAEHSAKLNV 524
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQ 96
G L C P G + W +G I + V G+ L I+ + G +
Sbjct: 634 GQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFT 693
Query: 97 CVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG 156
C +N+AG ++ T L V V P I P D + GS EC G V WK+
Sbjct: 694 CHARNLAGHQQFTTP-LNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAV 752
Query: 157 SAMPEDRMSVLPSR-------SLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQS 206
P + + S +L + +++ + G Y+CEA N +G +SA ++VQ+
Sbjct: 753 GDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA 810
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 77/196 (39%), Gaps = 24/196 (12%)
Query: 34 QRVAAGDTALLECGPPRGHPEPTLV--W----KKNGHPIDFENSKRLRLVDGTNLAIQDS 87
+ V G++A+++C P + V W ++N P + K L L G L I++
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREV 206
Query: 88 RKTDDGR-YQCVVKN--VAGTRESTDAVLRVLVKPYIIRGPKDT--------TVSAGSII 136
D + YQC K+ TR S V+ +P PK T S S +
Sbjct: 207 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTM 266
Query: 137 VFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS------DVRLEDGGEYVCEAE 190
C G V W + + VL R Q+S D +ED G+Y+C
Sbjct: 267 ALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVN 326
Query: 191 NAVGKISASATLTVQS 206
N+VG S LTV +
Sbjct: 327 NSVGGESVETVLTVTA 342
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLA 83
R+ K V A +T C P G+P P++ W KNG +F R+ + +L
Sbjct: 19 RMDKKLLAVPAANTVRFRC-PAAGNPTPSISWLKNGR--EFRGEHRIGGIKLRHQQWSLV 75
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
++ +D G Y CVV+N G+ T D + R +P + G P + T GS + F
Sbjct: 76 MESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFH 135
Query: 140 CSVGGDAVLTVHWKRL----GSAMPED---RMSVLPSR---------SLQLSDVRLEDGG 183
C V DA + W + GS + D ++VL S L+L++V DGG
Sbjct: 136 CKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGG 195
Query: 184 EYVCEAENAVGKISASATLTVQ 205
EY+C A N +G + L+V
Sbjct: 196 EYLCRATNFIGVAEKAFWLSVH 217
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
+ V W + + + E RMS + S + L++ ++ +ED G+Y CEA NA G S+S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 201 TLTVQ 205
+L V+
Sbjct: 186 SLKVK 190
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 16/166 (9%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 104
G PE ++W K+ I + R+ V+ NL+++DS G Y C N A
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS-----GDYTCEAHNAA- 178
Query: 105 TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMP 160
S+ L+V P + P G+ + EC + G V W + L S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Query: 161 EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
MS S+ + +V D GEY C+A N VG + ++T+++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLP-SRS 171
+ P+ P ++ G F+C V G A + + W + + +M+++ + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
L + V D G+Y C A N GK S SA L VQ+
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQA 97
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
F ++P S +A G++ +C P + W K+ I + ++ LV+ T L +
Sbjct: 200 FDLKPVSVDLALGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLVENTATLTVL 258
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 259 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 317
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
+ V W + + + E RMS + S + L++ ++ +ED G+Y CEA NA G S+S
Sbjct: 318 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 377
Query: 201 TLTVQ 205
+L V+
Sbjct: 378 SLKVK 382
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 10/178 (5%)
Query: 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-TNLAIQDSRKTDDG 93
A G+ L+C G PE + W K + + +++ + +L I +D G
Sbjct: 16 EAAIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVG 74
Query: 94 RYQCVVKNVAGTRESTDAVLRVL---VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTV 150
Y C +N G S+ AVL + + P R KD + G + FEC + G L V
Sbjct: 75 EYTCKAENSVGAVASS-AVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQV 133
Query: 151 HWKRLGSAMPED---RMSVLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
W + G + +D + S + + +LQ+ G+Y C A N +G S+SA LT+
Sbjct: 134 SWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTL 191
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 71/160 (44%), Gaps = 8/160 (5%)
Query: 54 EPTLV-WKKNGHPI-DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 111
EP V W K+G + D N + + + L I + ++ G+Y C N GT S+
Sbjct: 129 EPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAK 188
Query: 112 VL--RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSV 166
+ V P+ P ++ G F+C V G A + + W + + +M++
Sbjct: 189 LTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL 248
Query: 167 LP-SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
+ + +L + V D G+Y C A N GK S SA L VQ
Sbjct: 249 VENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 16/166 (9%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 104
G PE ++W K+ I + R+ V+ NL+++DS G Y C N A
Sbjct: 317 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS-----GDYTCEAHNAA- 370
Query: 105 TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMP 160
S+ L+V P + P G+ + EC + G V W + L S
Sbjct: 371 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 430
Query: 161 EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
MS S+ + +V D GEY C+A N VG + ++T+++
Sbjct: 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLPS-RSLQL 174
PY I + + G I +C V G + + W + + + P +M + SL +
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSKYL 209
+ V D GEY C+AEN+VG +++SA L ++ + L
Sbjct: 66 NKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL 100
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 78/186 (41%), Gaps = 12/186 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLA 83
FR +P G LEC +G P + W K+ + + K+ +++ T++
Sbjct: 387 FRKKPHPVETLKGADVHLEC-ELQGTPPFQVSWHKDKR--ELRSGKKYKIMSENFLTSIH 443
Query: 84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVG 143
I + D G YQC N G+ ++ + + P ++ D + G + + ++
Sbjct: 444 ILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE 502
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQLSDVRLEDGGEYVCEAENAVGKISA 198
G ++V W + + + ++ S S LQ S + G+Y C+ +N G
Sbjct: 503 GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQEC 562
Query: 199 SATLTV 204
ATL+V
Sbjct: 563 FATLSV 568
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 66.6 bits (161), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQ 85
F ++P S +A G++ +C G + W K+ I + ++ LV+ T L +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVL 66
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDT-TVSAGSIIVFECSVGG 144
K D G+Y C NVAG ++S A L V P I+ + + V +EC +GG
Sbjct: 67 KVTKGDAGQYTCYASNVAG-KDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGG 125
Query: 145 DAVLTVHWKRLGSAMPED---RMSVLPSRS-LQLSDVRLEDGGEYVCEAENAVGKISASA 200
+ V W + + + E RMS + S + L++ ++ +ED G+Y CEA NA G S+S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 201 TLTVQ 205
+L V+
Sbjct: 186 SLKVK 190
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 70/166 (42%), Gaps = 16/166 (9%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 104
G PE ++W K+ I + R+ V+ NL+++DS G Y C N A
Sbjct: 125 GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDS-----GDYTCEAHNAA- 178
Query: 105 TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMP 160
S+ L+V P + P G+ + EC + G V W + L S
Sbjct: 179 GSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK 238
Query: 161 EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
MS S+ + +V D GEY C+A N VG + ++T+++
Sbjct: 239 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 116 LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---PEDRMSVLP-SRS 171
+ P+ P ++ G F+C V G A + + W + + +M+++ + +
Sbjct: 3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
L + V D G+Y C A N GK S SA L VQ
Sbjct: 63 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 84/202 (41%), Gaps = 28/202 (13%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+ + + V A +T C P G+P PT W KNG +F+ R+ N L
Sbjct: 15 KXEKRLHAVPAANTVKFRC-PAGGNPXPTXRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 71
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST---DAVLRVLVKPYIIRG-PKDTTVSAGSIIVFE 139
+ +D G Y CVV+N G+ T D V R +P + G P + + G + F
Sbjct: 72 XESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFV 131
Query: 140 CSVGGDAVLTVHW----KRLGSAMPEDRMSVLPS-------------RSLQLSDVRLEDG 182
C V DA + W ++ GS D + L L + +V ED
Sbjct: 132 CKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDA 191
Query: 183 GEYVCEAENAVGKISASATLTV 204
GEY C A N++G SA LTV
Sbjct: 192 GEYTCLAGNSIGISFHSAWLTV 213
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 84/190 (44%), Gaps = 10/190 (5%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 87 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYII--RGPKDTTVSAGSIIVFECSVG 143
+KTD+G Y+C + +A G D + V V P + + + T + G + C
Sbjct: 162 IKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD 221
Query: 144 GDAVLTVHWKRLGSAM----PEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKIS 197
G T+ W + G + +D + S +L+ +V D EYVC AEN G+
Sbjct: 222 GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQD 281
Query: 198 ASATLTVQSK 207
AS L V +K
Sbjct: 282 ASIHLKVFAK 291
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 9/166 (5%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLAIQ 85
P ++ G++ C + + W NG + N +R+ +V D + L I
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLTIY 67
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD 145
++ D G Y+CVV GT+ +++ K P G V C V
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 146 AVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRLEDGGEYVCE 188
T+ WK G + + R VL + LQ+ ++ D G Y CE
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 48 PPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103
P +G P P+ W K + + R++ V GT L I+D+ D G+Y CVV N
Sbjct: 241 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSV 299
Query: 104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 163
G ES + VL V P TV G VF C G+ + TV W + G A+
Sbjct: 300 GG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 358
Query: 164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
L++ V+ ED G Y C N ASA L
Sbjct: 359 ------SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%)
Query: 34 QRVAAGDTALLECGPPRGHPEPTLV--W----KKNGHPIDFENSKRLRLVDGTNLAIQDS 87
+ V G++A+++C P + V W ++N P + K L L G L I++
Sbjct: 119 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREV 177
Query: 88 RKTDDGR-YQCVVKN--VAGTRESTDAVLRVLVKPYIIRGP-------KDTTVSAGSIIV 137
D + YQC K+ TR S V+ +P P K + I
Sbjct: 178 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS 237
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS------DVRLEDGGEYVCEAEN 191
C G + W + + VL R Q+S D +ED G+Y+C N
Sbjct: 238 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 297
Query: 192 AVGKISASATLTV 204
+VG S LTV
Sbjct: 298 SVGGESVETVLTV 310
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 68/159 (42%), Gaps = 12/159 (7%)
Query: 48 PPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103
P +G P P+ W K + + R++ V GT L I+D+ D G+Y CVV N
Sbjct: 235 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSV 293
Query: 104 GTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 163
G ES + VL V P TV G VF C G+ + TV W + G A+
Sbjct: 294 GG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE 352
Query: 164 MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
L++ V+ ED G Y C N ASA L
Sbjct: 353 ------SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 74/193 (38%), Gaps = 23/193 (11%)
Query: 34 QRVAAGDTALLECGPPRGHPEPTLV--W----KKNGHPIDFENSKRLRLVDGTNLAIQDS 87
+ V G++A+++C P + V W ++N P + K L L G L I++
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-ELHIREV 171
Query: 88 RKTDDGR-YQCVVKN--VAGTRESTDAVLRVLVKPYIIRGP-------KDTTVSAGSIIV 137
D + YQC K+ TR S V+ +P P K + I
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTIS 231
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS------DVRLEDGGEYVCEAEN 191
C G + W + + VL R Q+S D +ED G+Y+C N
Sbjct: 232 LLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNN 291
Query: 192 AVGKISASATLTV 204
+VG S LTV
Sbjct: 292 SVGGESVETVLTV 304
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 81/190 (42%), Gaps = 17/190 (8%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
P+ Q +G A C G P+P + W K G + + + + DG L IQ R
Sbjct: 14 PEDQTGLSGGVASFVC-QATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR 72
Query: 89 -KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFEC 140
+ D+ Y+C N G +T A L VL + P I GP+ V G C
Sbjct: 73 VQRDEAIYECTATNSLG-EINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLC 131
Query: 141 SVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-K 195
+ GG+ + W + + A R+ L S +LQ+ D G+Y C A N+ G +
Sbjct: 132 AAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 191
Query: 196 ISASATLTVQ 205
SA A L V+
Sbjct: 192 YSAPANLYVR 201
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSL 172
KP ++ P+D T +G + F C G+ + W + G + R V+ L
Sbjct: 7 KPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 66
Query: 173 QLSDVRLE-DGGEYVCEAENAVGKISASATLTV 204
++ +R++ D Y C A N++G+I+ SA L+V
Sbjct: 67 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 99
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 67/157 (42%), Gaps = 12/157 (7%)
Query: 50 RGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105
+ +P P+ W K + + R++ V GT L I+D+ D G+Y CVV N G
Sbjct: 240 QSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT-LIIKDAVVEDSGKYLCVVNNSVGG 298
Query: 106 RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS 165
ES + VL V P TV G VF C G+ + TV W + G A+
Sbjct: 299 -ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE-- 355
Query: 166 VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
L++ V+ ED G Y C N ASA L
Sbjct: 356 ----SVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 24/181 (13%)
Query: 42 ALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGR------ 94
A +EC G+P P ++W + +G + + LR + + + +D R
Sbjct: 22 AEIEC-KASGNPMPEIIWIRSDGTAVG--DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQ 78
Query: 95 -YQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVG---GDAVLTV 150
Y C+ +N G+ S D +R +V + V G+ +V +C + D V
Sbjct: 79 VYACLARNQFGSIISRDVHVRAVVIQSYESEADNEYVIRGNSVVMKCEIPSYVADFVFVD 138
Query: 151 HW--------KRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGE-YVCEAENAV-GKISASA 200
W +A + + VLPS L + +V EDG + Y C ++ + G+ SA
Sbjct: 139 LWLDSEGRNYYPNNAAETDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSA 198
Query: 201 T 201
T
Sbjct: 199 T 199
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 149 TVHWKRLGSAMPEDRMSVLPSRSLQLS------DVRLEDGGEYVCEAENAVGKISASATL 202
+ W + + VL R Q+S D +ED G+Y+C N+VG S L
Sbjct: 246 SFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 305
Query: 203 TV 204
TV
Sbjct: 306 TV 307
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PID---FEN-SKRLRLVDGTNLAIQD 86
SQ V G LLEC G P P + W K G P D FEN +K LR+ TN++ +D
Sbjct: 231 SQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPSDKAKFENFNKALRI---TNVSEED 286
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
S G Y C+ N G+ T +V RV PY + PK+ ++ G C G+
Sbjct: 287 S-----GEYFCLASNKMGSIRHTISV-RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNP 340
Query: 147 VLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202
TV W + L SA P V ++ D ++ Y C N G + A+A +
Sbjct: 341 KPTVQWMVNGEPLQSAPPNPNREVA-GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFV 399
Query: 203 TV 204
+V
Sbjct: 400 SV 401
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 84/193 (43%), Gaps = 31/193 (16%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNG-HPIDFENSKRLRLVDG-------TNLAIQDS 87
V G L+C PP G P P + W + PI ++ R+ G +N+ +QD
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI----TQDKRVSQGHNGDLYFSNVMLQD- 182
Query: 88 RKTDDGRYQCVVKN--VAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSA----GS 134
+TD Y C + ++ L+VL P + P+ T S G
Sbjct: 183 MQTD---YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY-PQGTASSQMVLRGM 238
Query: 135 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDGGEYVCEAENAV 193
++ EC G + W + G +P D+ +++L++++V ED GEY C A N +
Sbjct: 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKM 298
Query: 194 GKISASATLTVQS 206
G I + ++ V++
Sbjct: 299 GSIRHTISVRVKA 311
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 22/197 (11%)
Query: 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR--- 88
K V D L+EC +G+P P+ W +N + R+ + + + D R
Sbjct: 25 KDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGG 83
Query: 89 --KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKD-TTVSAGSIIVFECS-VGG 144
+ +G YQC +N GT S L+V P + D V G+ + +C+ G
Sbjct: 84 RPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPG 143
Query: 145 DAVLTVHWKRLGSAMP----EDRMSVLPSRSLQLSDVRLED-GGEYVCEAENAVGKISAS 199
+ W + S+M + R+S + L S+V L+D +Y C A
Sbjct: 144 LPSPVIFW--MSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNAR-------FH 194
Query: 200 ATLTVQSKYLKVIHLLT 216
T T+Q K + +LT
Sbjct: 195 FTHTIQQKNPFTLKVLT 211
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89
+PK+ +A G+ L C G+P+PT+ W NG P+ R V G + +D++
Sbjct: 318 EPKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQI 376
Query: 90 TDDGRYQCVVKNVAG 104
+ YQC N G
Sbjct: 377 SSRAVYQCNTSNEHG 391
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSR 88
P+ Q +G A C G P+P + W K G + + + + DG L IQ R
Sbjct: 13 PEDQTGLSGGVASFVCQA-TGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLR 71
Query: 89 -KTDDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSIIVFEC 140
+ D+ Y+C N G +T A L VL + P I GP+ V C
Sbjct: 72 VQRDEAIYECTATNSLG-EINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLC 130
Query: 141 SVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-K 195
+ GG+ + W + + A R+ L S +LQ+ D G+Y C A N+ G +
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Query: 196 ISASATLTVQ 205
SA A L V+
Sbjct: 191 YSAPANLYVR 200
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVEKARTATMLCAA-GGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEE 173
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+D G+Y+CV N AGTR S A L V V+
Sbjct: 174 SDQGKYECVATNSAGTRYSAPANLYVRVR 202
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRSL 172
KP I+ P+D T +G + F C G+ + W + G + R V+ L
Sbjct: 6 KPVFIKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVL 65
Query: 173 QLSDVRLE-DGGEYVCEAENAVGKISASATLTV 204
++ +R++ D Y C A N++G+I+ SA L+V
Sbjct: 66 RIQPLRVQRDEAIYECTATNSLGEINTSAKLSV 98
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82 LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
A N+ G + S+ A L V+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
TD G+Y+CV N AG R S+ A L V V+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVR 202
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P I+ PKD +G + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
++ D Y C A+N+VG+I+ A LTV
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
F +PK Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKEPKDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82 LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V
Sbjct: 65 LRIQPLRTPRDENVYECVAQNSVG-EITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
C+ G+ + W +P D R+ L S +LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
A N+ G + S+ A L V+
Sbjct: 182 VATNSAGVRYSSPANLYVR 200
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEE 173
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
TD G+Y+CV N AG R S+ A L V V+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVR 202
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P I+ PKD +G + F C GD V W + G + R + + +R
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
++ D Y C A+N+VG+I+ A LTV
Sbjct: 67 IQPLRTPRDENVYECVAQNSVGEITVHAKLTV 98
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 2/88 (2%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQDSRK 89
P+ + V TA + C G+P+P + W K+ P+D S R++ + L I+ S +
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEE 173
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLV 117
TD G+Y+CV N AG R S+ A L V V
Sbjct: 174 TDQGKYECVASNSAGVRYSSPANLYVRV 201
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/199 (28%), Positives = 81/199 (40%), Gaps = 27/199 (13%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTN 81
F +P Q +G A C G P+P + W K G + NS+R ++ G
Sbjct: 9 FIKKPVDQIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKV---NSQRFETIEFDESAGAV 64
Query: 82 LAIQDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAG 133
L IQ R D+ Y+CV +N G + A L VL + P I GP+ V
Sbjct: 65 LRIQPLRTPRDENIYECVAQNPHG-EVTVHAKLTVLREDQLPPGFPNIDMGPQLKVVERT 123
Query: 134 SIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVC 187
C+ G+ + W +P D R+ L S LQ+ D G+Y C
Sbjct: 124 RTATMLCAASGNPDPEITW--FKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKYEC 181
Query: 188 EAENAVG-KISASATLTVQ 205
A N+ G + S+ A L V+
Sbjct: 182 VASNSAGVRYSSPANLYVR 200
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P I+ P D +G + F C GD V W + G + R + + +R
Sbjct: 7 PVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
++ D Y C A+N G+++ A LTV
Sbjct: 67 IQPLRTPRDENIYECVAQNPHGEVTVHAKLTV 98
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 63
Query: 87 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVG 143
K+D+G Y+C + A G + D ++ V V P I K + T G + F C
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKISASAT 201
G + W R G + E+ +L + +L+ ++ DGG YVC A N G+ A
Sbjct: 124 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 183
Query: 202 LTV 204
L V
Sbjct: 184 LQV 186
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 6/183 (3%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
FR Q G+ A + C P P + W + + + R ++ NL I +
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 159
Query: 87 SRKTDDGRYQCVVKNVA-GTRESTDAVLRVLVKPYIIRGPK--DTTVSAGSIIVFECSVG 143
K+D+G Y+C + A G + D ++ V V P I K + T G + F C
Sbjct: 160 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 219
Query: 144 GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLS--DVRLEDGGEYVCEAENAVGKISASAT 201
G + W R G + E+ +L + +L+ ++ DGG YVC A N G+ A
Sbjct: 220 GSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAF 279
Query: 202 LTV 204
L V
Sbjct: 280 LQV 282
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS----KRLRLVDGTNLAIQD 86
P+ + V TA + C G+P+P + W K+ P+D N+ K+LR L I+
Sbjct: 115 PQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQ 173
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
S ++D G+Y+CV N AGTR S A L V
Sbjct: 174 SEESDQGKYECVATNSAGTRYSAPANLYV 202
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 79/197 (40%), Gaps = 20/197 (10%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 84
F P Q +G A C G P P +VW K G + + + + DG+ L I
Sbjct: 9 FTRTPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRI 67
Query: 85 QDSRKT-DDGRYQCVVKNVAGTRESTDAVLRVLVK-------PYIIRGPKDTTVSAGSII 136
Q R D+ Y+CV N G S L VL + P I GP+ V
Sbjct: 68 QPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTA 126
Query: 137 VFECSVGGDAVLTVHWKR----LGSAMPEDRMSVLPSRS---LQLSDVRLEDGGEYVCEA 189
C+ G+ + W + + ++ R+ L S S LQ+ D G+Y C A
Sbjct: 127 TMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA 186
Query: 190 ENAVG-KISASATLTVQ 205
N+ G + SA A L V+
Sbjct: 187 TNSAGTRYSAPANLYVR 203
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVR 178
P R P D T +G + F C GD + W + G + R V+ S +R
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLR 66
Query: 179 LE------DGGEYVCEAENAVGKISASATLTV 204
++ D Y C A N VG+IS S LTV
Sbjct: 67 IQPLRTPRDEAIYECVASNNVGEISVSTRLTV 98
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 51 GHPEPTLVWKKNGHPIDFE-NSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108
G PEPT+ W K+G PI+ E N ++ DG+ L I+ K+D+ Y C+ +N AG +++
Sbjct: 39 GFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICIAENKAGEQDA 98
Query: 109 TDAVLRVLVK 118
T L+V K
Sbjct: 99 T-IHLKVFAK 107
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP----EDRMSV-LPSRSLQLSDVRLED 181
+ T + + C G T+ W + G + E++ S L + V D
Sbjct: 22 NATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSD 81
Query: 182 GGEYVCEAENAVGKISASATLTVQSK 207
EY+C AEN G+ A+ L V +K
Sbjct: 82 EAEYICIAENKAGEQDATIHLKVFAK 107
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSRSLQLSD 176
P I++GP + T++ + +C GD + + W + G P + R ++ +LQ+ +
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKN 68
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTV 204
+R+ D G Y C A ++ G+ S SA L V
Sbjct: 69 LRISDTGTYTCVATSSSGETSWSAVLDV 96
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKT 90
P +Q +A TALL+C G P P + W K G + + GT L I++ R +
Sbjct: 15 PANQTLAVDGTALLKC-KATGDPLPVISWLKEGFTFPGRDPRATIQEQGT-LQIKNLRIS 72
Query: 91 DDGRYQCVVKNVAGTRESTDAVLRV 115
D G Y CV + +G S AVL V
Sbjct: 73 DTGTYTCVATSSSG-ETSWSAVLDV 96
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-KRLGSAMPED----RMSVLPSRSLQ 173
P I+ P D V+ G +C G ++ +V+W G+ M R+SVL +L
Sbjct: 313 PVIVEPPTDLNVTEGMAAELKCRTG-TSMTSVNWLTPNGTLMTHGSYRVRISVLHDGTLN 371
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
++V ++D G+Y C N+ G +ASATL V +K
Sbjct: 372 FTNVTVQDTGQYTCMVTNSAGNTTASATLNVGTK 405
>pdb|1EPF|A Chain A, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|B Chain B, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|C Chain C, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
pdb|1EPF|D Chain D, Crystal Structure Of The Two N-Terminal Immunoglobulin
Domains Of The Neural Cell Adhesion Molecule (Ncam)
Length = 191
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 9/167 (5%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLAIQ 85
P ++ G++ C + + W NG + N +R+ +V D + L I
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLTIY 67
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD 145
++ D G Y+CVV GT+ +++ K P G V C V
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 146 AVLTVHWKRLGSAM---PEDRMSVLPSRSLQLSDVRLEDGGEYVCEA 189
T+ WK G + + R VL + LQ+ ++ D G Y CE
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG 174
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 103 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 161
Query: 87 SRKTDDGRYQC 97
+KTD+G Y+C
Sbjct: 162 IKKTDEGTYRC 172
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDG-------- 79
+Q K++ L C G P P + WK+ F E K L DG
Sbjct: 5 IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSL---DGRIEVKGQH 60
Query: 80 --TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
++L I+D + +D GRY C + G + + L + P I G+ I
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDGGEYVCEAEN 191
C V + ++HW+R +P + L + S L+++ D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 192 AVG 194
+G
Sbjct: 180 HIG 182
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV--- 166
+P+II+ +TT G + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
S SL + DV+L D G Y CEA + +G S L ++
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVAGTR 106
+ +P ++ W+++ + +N+ L+ L I + D GRY C N GTR
Sbjct: 125 KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
Query: 107 --ESTDAVLRVLVKPYIIR 123
E A+ V PY ++
Sbjct: 185 FQEYILALADVPSSPYGVK 203
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 22/183 (12%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDG-------- 79
+Q K++ L C G P P + WK+ F E K L DG
Sbjct: 5 IQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSL---DGRIEVKGQH 60
Query: 80 --TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
++L I+D + +D GRY C + G + + L + P I G+ I
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKS-MYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 138 FECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVRLEDGGEYVCEAEN 191
C V + ++HW+R +P + L + S L+++ D G Y C A N
Sbjct: 120 ISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 192 AVG 194
+G
Sbjct: 180 HIG 182
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 12/99 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--------GSAMPEDRMSV--- 166
+P+II+ +TT G + + C G+ + + WKR G + R+ V
Sbjct: 1 QPHIIQLKNETTYENGQVTLV-CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59
Query: 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
S SL + DV+L D G Y CEA + +G S L ++
Sbjct: 60 HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN---LAIQDSRKTDDGRYQCVVKNVAGTR 106
+ +P ++ W+++ + +N+ L+ L I + D GRY C N GTR
Sbjct: 125 KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTR 184
Query: 107 --ESTDAVLRVLVKPYIIR 123
E A+ V PY ++
Sbjct: 185 FQEYILALADVPSSPYGVK 203
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 19/190 (10%)
Query: 30 QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 85
QP +S V G TA E G P P + W ++G I ++ DG L I
Sbjct: 10 QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFEC 140
K + GRY N +G ST +LVK P ++ + TV GS + +
Sbjct: 69 AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 141 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDGGEYVCEAENAVGK 195
V G V + R G+ + + + S+ SL +++ ED G Y A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 196 ISASATLTVQ 205
+++A L VQ
Sbjct: 185 ATSTAELLVQ 194
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE---------DGG 183
GS FE + G V V W R G + S LP + SD R + + G
Sbjct: 20 GSTATFEAHISGFPVPEVSWFRDGQVI---STSTLPGVQISFSDGRAKLTIPAVTKANSG 76
Query: 184 EYVCEAENAVGKISASATLTVQSK 207
Y +A N G+ +++A L V+++
Sbjct: 77 RYSLKATNGSGQATSTAELLVKAE 100
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 19/192 (9%)
Query: 30 QP-KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDG-TNLAIQ 85
QP +S V G TA E G P P + W ++G I ++ DG L I
Sbjct: 10 QPLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIP 68
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVFEC 140
K + GRY N +G ST +LVK P ++ + TV GS + +
Sbjct: 69 AVTKANSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQVRLQV 125
Query: 141 SVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----SLQLSDVRLEDGGEYVCEAENAVGK 195
V G V + R G+ + + + S+ SL +++ ED G Y A N+VG+
Sbjct: 126 RVTGIPTPVVKFYRDGAEI-QSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR 184
Query: 196 ISASATLTVQSK 207
+++A L VQ +
Sbjct: 185 ATSTAELLVQGE 196
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Query: 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMPEDRMSVLPSRSLQLSDVR 178
R + V G + F C GD + W K L SA R++V P +L++ +
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 179 LEDGGEYVCEAENAVGKISASATLTVQS 206
++D G Y+C A NA G S A L V+S
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHVRS 477
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 32 KSQRVAA--GDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
K+Q+V G T C G P P ++W H + +++ RL + L ++ ++
Sbjct: 391 KAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 89 KTDDGRYQCVVKNVAGTRESTDAVLRV 115
D+G Y C+ N AG +S A L V
Sbjct: 450 VQDNGTYLCIAAN-AGGNDSMPAHLHV 475
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 80/201 (39%), Gaps = 51/201 (25%)
Query: 44 LECGPPRGHPEPTLVWKK-------NGHPIDFENSKRLRLVDGTNLAIQDSRK---TDDG 93
L+C P +P+P + WKK N DF+ +R+ NL K +D
Sbjct: 120 LDCVLPNAYPKPLITWKKRLSGADPNADVTDFD--RRITAGPDGNLYFTIVTKEDVSDIY 177
Query: 94 RYQCVVKNVAGTRESTDAVLRVLVKPYIIRG-----------------PKDTTVSAGSII 136
+Y C KN A E V++ Y I+G KD AG +
Sbjct: 178 KYVCTAKNAAVDEE-------VVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 137 VFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQLSDVRL-------EDGGEYV 186
+ C G + + ++ + G + PEDR++ R + S RL ED G Y
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRIT----RHNRTSGKRLLFKTTLPEDEGVYT 286
Query: 187 CEAENAVGKISA-SATLTVQS 206
CE +N VGK S LTV S
Sbjct: 287 CEVDNGVGKPQKHSLKLTVVS 307
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 63/170 (37%), Gaps = 12/170 (7%)
Query: 32 KSQRVAAGDTALLEC---GPPRGHPEPTLVWKKNGHPIDFENSKRL---RLVDGTNLAIQ 85
K AGD ++ C P G+P + KNG ++ R+ G L +
Sbjct: 220 KDMMAKAGDVTMIYCMYGSNPMGYPN----YFKNGKDVNGNPEDRITRHNRTSGKRLLFK 275
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP-KDTTVSAGSIIVFECSVGG 144
+ D+G Y C V N G + L V+ P + P K V G + C V G
Sbjct: 276 TTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTG 335
Query: 145 DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194
V W + R +V S L + V+ D G Y C A N G
Sbjct: 336 LPAPNVVWSHNAKPLSGGRATVTDS-GLVIKGVKNGDKGYYGCRATNEHG 384
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 20/150 (13%)
Query: 59 WKKNGHPIDF-ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117
WKK+G ++ E++ LR +G+ L + +D+G YQC + AG S R
Sbjct: 41 WKKDGKSYNWQEHNAALRKDEGS-LVFLRPQASDEGHYQCFAETPAGVASSRVISFR--- 96
Query: 118 KPYIIRGPKDT---TVSAGSIIVFECSV-GGDAVLTVHW-KRLGSAMP-------EDRMS 165
K Y+I P T T G +C + + W KRL A P + R++
Sbjct: 97 KTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156
Query: 166 VLPSRSLQLSDVRLEDGGE---YVCEAENA 192
P +L + V ED + YVC A+NA
Sbjct: 157 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNA 186
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 176
I+ P+ TV G F C G+ V TV W R G + R V ++ + ++S
Sbjct: 11 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 70
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
V+ D G Y EN+ GK A TLT+Q
Sbjct: 71 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 99
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQ 85
+P+S V G++A C G P PT+ W + G + S R ++ + I
Sbjct: 13 TKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLS--TSARHQVTTTKYKSTFEIS 69
Query: 86 DSRKTDDGRYQCVVKNVAGTRES 108
+ +D+G Y VV+N G +E+
Sbjct: 70 SVQASDEGNYSVVVENSEGKQEA 92
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-LQLS 175
V P KD V G V +CSV G V + W G + R + + L +
Sbjct: 10 VAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQ 69
Query: 176 DVRLEDGGEYVCEAENAVGKISASATLTVQ 205
D ED G Y C AENA+G++S SA +TV
Sbjct: 70 DALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD 91
K V G +L+C RG P P + W NG PI + S V L IQD+ D
Sbjct: 19 KDCAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYARSTCEAGV--AELHIQDALPED 75
Query: 92 DGRYQCVVKNVAG 104
G Y C+ +N G
Sbjct: 76 HGTYTCLAENALG 88
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA--------MPEDRMSVLPS 169
KP I+ G +DTTVS+ S+ F G+ T W + G A + ED+
Sbjct: 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFF-- 63
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
L++ D G Y C +N+ G +S+S LT+++
Sbjct: 64 --LEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
G P PT +W K+G I + +L + G L I + +D G Y C VKN AG+
Sbjct: 32 GEPRPTAIWTKDGKAI--TQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVS 89
Query: 108 ST 109
S+
Sbjct: 90 SS 91
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 23/190 (12%)
Query: 27 FRVQPK----------SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL 76
FRV P+ S+ V D C P + T +W N + S RL+L
Sbjct: 104 FRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPV--SPRLQL 159
Query: 77 VDGT-NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSAGS 134
+G L + + + D Y+C +N R S +L VL P P +T+ +G
Sbjct: 160 SNGNRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGE 219
Query: 135 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194
+ C + W G+ + +P ++ + + G Y C+A N+
Sbjct: 220 NLNLSCHAASNPPAQYSWFVNGTFQQSTQELFIP-------NITVNNSGSYTCQAHNSDT 272
Query: 195 KISASATLTV 204
++ + T+
Sbjct: 273 GLNRTTVTTI 282
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 49/131 (37%), Gaps = 14/131 (10%)
Query: 76 LVDGT------NLAIQDSRKTDDGRYQCVVKNVAG----TRESTDAVLRVLVKPYIIRGP 125
L+DG L I + + + G Y C N A T T V L KP I
Sbjct: 416 LIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSN- 474
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLP-SRSLQLSDVRLEDGG 183
V + F C + W G ++P R+ + +R+L L +V D
Sbjct: 475 NSKPVEDKDAVAFTCEPEAQNTTYLWWVN-GQSLPVSPRLQLSNGNRTLTLFNVTRNDAR 533
Query: 184 EYVCEAENAVG 194
YVC +N+V
Sbjct: 534 AYVCGIQNSVS 544
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSR---SLQLSD 176
I+ P+ TV G F C G+ V TV W R G + R V ++ + ++S
Sbjct: 17 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 76
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
V+ D G Y EN+ GK A TLT+Q
Sbjct: 77 VQASDEGNYSVVVENSEGKQEAEFTLTIQ 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG---TNLAIQ 85
+P+S V G++A C G P PT+ W + G + S R ++ + I
Sbjct: 19 TKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLS--TSARHQVTTTKYKSTFEIS 75
Query: 86 DSRKTDDGRYQCVVKNVAGTRES 108
+ +D+G Y VV+N G +E+
Sbjct: 76 SVQASDEGNYSVVVENSEGKQEA 98
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 173
P+I+ P+D +S G + +C + +V W L A R+SVL +L
Sbjct: 8 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 65
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
S V L D G Y C N G +ASA L V S
Sbjct: 66 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSS 98
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
Query: 31 PKSQRVAAGDTALLEC-GPPRGH-----PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 84
P+ ++ G A L+C PP P T++ + HP R+ +++ L
Sbjct: 14 PRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHP-------RISVLNDGTLNF 66
Query: 85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
+D G Y C+V NVAG ++ A L V P
Sbjct: 67 SHVLLSDTGVYTCMVTNVAGNSNAS-AYLNVSSGP 100
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 6/91 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-KRLGSAMPED----RMSVLPSRSLQ 173
P I+ P D V+ G +C ++ +V W G+ M R++VL +L
Sbjct: 342 PVIVEPPADLNVTEGMAAELKCR-ASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLN 400
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTV 204
++V ++D G Y C N+VG +ASATL V
Sbjct: 401 FTNVTVQDTGMYTCMVSNSVGNTTASATLNV 431
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW-----KRLGSAMPEDRMSVLPSRSLQ 173
P+I+ P+D +S G + +C + +V W L A R+SVL +L
Sbjct: 353 PFIMDAPRDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
S V L D G Y C N G +ASA L V +
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYLNVST 443
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 31 PKSQRVAAGDTALLEC-GPPRGH-----PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAI 84
P+ ++ G A L+C PP P T++ + HP R+ +++ L
Sbjct: 359 PRDLNISEGRMAELKCRTPPMSSVKWLLPNGTVLSHASRHP-------RISVLNDGTLNF 411
Query: 85 QDSRKTDDGRYQCVVKNVAGTREST 109
+D G Y C+V NVAG ++
Sbjct: 412 SHVLLSDTGVYTCMVTNVAGNSNAS 436
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--SAMPEDRMSVLPSRSLQLSD 176
P I +GP + TV+ V C G V T+ W++ G + + R+ L + LQ+
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRY 68
Query: 177 VRLEDGGEYVCEAENAVGKISASATLTVQ 205
+L D G Y C A G+ + SA + VQ
Sbjct: 69 AKLGDTGRYTCIASTPSGEATWSAYIEVQ 97
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
R P +Q VA T +L C G P PT++W+K+G + ++S+ +L +G L I+
Sbjct: 11 IRQGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQLENGV-LQIRY 68
Query: 87 SRKTDDGRYQCVVKNVAG 104
++ D GRY C+ +G
Sbjct: 69 AKLGDTGRYTCIASTPSG 86
>pdb|2KKQ|A Chain A, Solution Nmr Structure Of The Ig-Like C2-Type 2 Domain Of
Human Myotilin. Northeast Structural Genomics Target
Hr3158
Length = 116
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGT---NL 82
F +P+S++V GD+ LEC P P L WK+N + F N+ R+ L D T L
Sbjct: 18 FIYKPQSKKVLEGDSVKLECQ-ISAIPPPKLFWKRNNEMVQF-NTDRISLYQDNTGRVTL 75
Query: 83 AIQDSRKTDDGRYQCVVKNVAG 104
I+D K D G Y N AG
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAG 97
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP--EDRMSVLPSR----SL 172
P I P+ V G + EC + + WKR + DR+S+ +L
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTL 75
Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
+ DV +D G Y A N G + + L V ++
Sbjct: 76 LIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTAR 110
>pdb|2C5D|C Chain C, Structure Of A Minimal Gas6-Axl Complex
pdb|2C5D|D Chain D, Structure Of A Minimal Gas6-Axl Complex
Length = 195
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 18/168 (10%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDG----------TNLAIQDSRKTDDGRYQCVV 99
+G P P + W ++G ++ +S + ++ G + L I + +D G+YQC+V
Sbjct: 29 QGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLV 87
Query: 100 KNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSA 158
T S + + PY + P+D TV+A + C G + + W L A
Sbjct: 88 FLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLW--LQDA 145
Query: 159 MP-EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISASATLTV 204
+P P RSL + L + CEA NA G S +AT+TV
Sbjct: 146 VPLATAPGHGPQRSLHVPG--LNKTSSFSCEAHNAKGVTTSRTATITV 191
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 103 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG 156
A E+ DA L + VKPY + D V GS F+C V G V W +
Sbjct: 20 ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 157 SAMPEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ + E R + + SL +S+V +D +Y C+A N++G+ + +A L V++
Sbjct: 80 NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDD 92
V G A +C G+P+P ++W K+ +P+ ++ + N L I + DD
Sbjct: 52 EVVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDD 110
Query: 93 GRYQCVVKNVAGTRESTDAVL 113
+Y C N G T +L
Sbjct: 111 AKYTCKAVNSLGEATCTAELL 131
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 103 AGTRESTDAVLRVL------VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG 156
A E+ DA L + VKPY + D V GS F+C V G V W +
Sbjct: 20 ANKVENEDAFLEEVAEEKPHVKPYFTKTILDMDVVEGSAARFDCKVEGYPDPEVMWFKDD 79
Query: 157 SAMPEDRMSVLP-----SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ + E R + + SL +S+V +D +Y C+A N++G+ + +A L V++
Sbjct: 80 NPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 134
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDG 93
V G A +C G+P+P ++W K+ +P+ ++ + N L I + DD
Sbjct: 53 VVEGSAARFDC-KVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 94 RYQCVVKNVAGTRESTDAVL 113
+Y C N G T +L
Sbjct: 112 KYTCKAVNSLGEATCTAELL 131
>pdb|3NCM|A Chain A, Neural Cell Adhesion Molecule, Module 2, Nmr, 20
Structures
Length = 92
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
F+ P Q G+ A++ C P PT++WK G + + R ++ L I+
Sbjct: 4 FKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62
Query: 87 SRKTDDGRYQC 97
+KTD+G Y+C
Sbjct: 63 IKKTDEGTYRC 73
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AMPED-RMSVLPSRSLQLSDVRLE 180
P G V C V T+ WK G + +D R VL + LQ+ ++
Sbjct: 7 APTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT 66
Query: 181 DGGEYVCEA 189
D G Y CE
Sbjct: 67 DEGTYRCEG 75
>pdb|3JZ7|A Chain A, Crystal Structure Of The Extracellular Domains Of
Coxsackie & Adenovirus Receptor From Mouse (Mcar)
Length = 214
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 77 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSII 136
++ TNL + +D G YQC VK G + +L VLVKP R D + G+
Sbjct: 86 INVTNLQL-----SDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDF 139
Query: 137 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
+C G L W++L + MP ++ + S + + + E G Y C +N V
Sbjct: 140 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 199
Query: 194 G 194
G
Sbjct: 200 G 200
>pdb|3MJ7|B Chain B, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
Length = 225
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 9/121 (7%)
Query: 77 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSII 136
++ TNL + +D G YQC VK G + +L VLVKP R D + G+
Sbjct: 88 INVTNLQL-----SDIGTYQCKVKKAPGV-ANKKFLLTVLVKPSGTRCFVDGSEEIGNDF 141
Query: 137 VFECSVG-GDAVLTVHWKRLGSA--MPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193
+C G L W++L + MP ++ + S + + + E G Y C +N V
Sbjct: 142 KLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRV 201
Query: 194 G 194
G
Sbjct: 202 G 202
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 174
P I + KD T G C + G + + W R G + + R + S +L +
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTV 67
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
ED G Y C A N VG++ S+ L +Q+
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQA 99
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 15/75 (20%)
Query: 51 GHPEPTLVWK------KNGHPIDFENSKRLRLVDGTNLAIQD-SRKTDDGRYQCVVKNVA 103
G P P + W +N I EN++ T+L +++ RKT G+Y+ + NV
Sbjct: 129 GRPVPAMTWFHGQKLLQNSENITIENTEHY-----THLVMKNVQRKTHAGKYKVQLSNVF 183
Query: 104 GTRESTDAVLRVLVK 118
GT DA+L V ++
Sbjct: 184 GT---VDAILDVEIQ 195
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 73/191 (38%), Gaps = 13/191 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAI 84
R + K G+ A L C G P P + W + G + ++ K DG L +
Sbjct: 10 IRKEMKDVTTKLGEAAQLSC-QIVGRPLPDIKWYRFGKEL-IQSRKYKMSSDGRTHTLTV 67
Query: 85 QDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP-KDTTVSA-GSIIVFECSV 142
+ D+G Y C+ N G E++ +L + P K+ A GS +
Sbjct: 68 MTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY 127
Query: 143 GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED------GGEYVCEAENAVGKI 196
G V + W G + ++ ++ + + + +++ G+Y + N G +
Sbjct: 128 IGRPVPAMTWFH-GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186
Query: 197 SASATLTVQSK 207
A + +Q K
Sbjct: 187 DAILDVEIQDK 197
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 74/185 (40%), Gaps = 23/185 (12%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN-----LAIQ 85
P V+ G L C G EP + W K+G + +N +L + L+++
Sbjct: 9 PVKLTVSQGQPVKLNCSV-EGXEEPDIQWVKDGAVV--QNLDQLYIPVSEQHWIGFLSLK 65
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFEC-SVGG 144
++D GRY C V++ T S L V P+ PKD V + C +VG
Sbjct: 66 SVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGP 125
Query: 145 DAVLTVHWKR----LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA 200
+T+ W R +G P + L+ + + CEA N G +++S
Sbjct: 126 PEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQSTXFSCEAHNLKG-LASSR 175
Query: 201 TLTVQ 205
T TV
Sbjct: 176 TATVH 180
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRS-----LQL 174
++ P TVS G + CSV G + W + G+ + D++ + S L L
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64
Query: 175 SDVRLEDGGEYVCEAEN-AVGKISASATLTVQ 205
V D G Y C+ E+ +IS LTV+
Sbjct: 65 KSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----DFENSKRLRLVDGT--NLA 83
P V+ G+ A L C G P PT+ W K G + D S R+ L G+ L
Sbjct: 15 HPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLR 73
Query: 84 IQDSRKT--DDGRYQCVVKNVAGTRESTDAVLRV 115
I RK+ D+G Y CV +N G S DA L V
Sbjct: 74 IVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM------PEDRMSVLPSRSL 172
P I+ P D VS G C G T+ W + G + P +LPS SL
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 173 QLSDV-----RLEDGGEYVCEAENAVGK-ISASATLTV 204
+ D G YVC A N +G+ +S A+L V
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107
>pdb|2WV3|A Chain A, Neuroplastin-55 Binds To And Signals Through The
Fibroblast Growth Factor Receptor
Length = 190
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 16/157 (10%)
Query: 59 WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
W KNG E + + I R D G Y CV V+ + +A + V
Sbjct: 39 WTKNG----VELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPK--ANATIEVKAA 92
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSL 172
P I + + G + C G W++ + + E+ R ++ +
Sbjct: 93 PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENY 152
Query: 173 -QLSDVRL---EDGGEYVCEAENAVGKISASATLTVQ 205
+L+ V L ED GEY C A N++G S S L V+
Sbjct: 153 TELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR-----S 171
+P+ ++ P D TV G + +C V G + W+ G + D + R S
Sbjct: 8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHS 67
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
L + V D G Y C A N G+ S S L V +K
Sbjct: 68 LIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAK 103
Score = 32.0 bits (71), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAI 84
F P V G ++C G P P L W+ +G P+ +++ ++ + + +L I
Sbjct: 12 FLQAPGDLTVQEGKLCRMDC-KVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLII 70
Query: 85 QDSRKTDDGRYQCVVKNVAG 104
+ D G Y C+ N AG
Sbjct: 71 EPVTSRDAGIYTCIATNRAG 90
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDGGE 184
V A + + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79
Query: 185 YVCEAENAVGKISASATLTV 204
Y C EN G I+ + L V
Sbjct: 80 YTCVVENEYGSINHTYHLDV 99
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 12 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 68
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST 109
++ +D G Y CVV+N G+ T
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHT 94
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDGGE 184
V A + + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 24 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 83
Query: 185 YVCEAENAVGKISASATLTV 204
Y C EN G I+ + L V
Sbjct: 84 YTCVVENEYGSINHTYHLDV 103
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 16 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 72
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST 109
++ +D G Y CVV+N G+ T
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHT 98
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 130 VSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSR----SLQLSDVRLEDGGE 184
V A + + F C GG+ + T+ W + G E R+ R SL + V D G
Sbjct: 25 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 84
Query: 185 YVCEAENAVGKISASATLTV 204
Y C EN G I+ + L V
Sbjct: 85 YTCVVENEYGSINHTYHLDV 104
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN----LA 83
+++ + V A +T C P G+P PT+ W KNG +F+ R+ N L
Sbjct: 17 KMEKRLHAVPAANTVKFRC-PAGGNPMPTMRWLKNGK--EFKQEHRIGGYKVRNQHWSLI 73
Query: 84 IQDSRKTDDGRYQCVVKNVAGTREST 109
++ +D G Y CVV+N G+ T
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHT 99
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
V+P SQ++ G T +L+C G P P W KN P+ E +K+L +V +L Q
Sbjct: 8 VEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHE-TKKLYMVPYVDLEHQ--- 62
Query: 89 KTDDGRYQCVVKNVAGTRESTDA 111
G Y C V N R+S D+
Sbjct: 63 ----GTYWCHVYN---DRDSQDS 78
>pdb|3SO5|A Chain A, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
pdb|3SO5|B Chain B, Crystal Structure Of An Immunoglobulin I-Set Domain Of
Lrig3 Protein (Lrig3) From Mus Musculus At 1.70 A
Resolution
Length = 112
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPI---DFENSKRLRLVDG----- 79
VQP++Q G C P T W + + + EN LR G
Sbjct: 15 VQPETQSAIXGSDVSFTCSAASSSDSPXTFAWXXDNEALQDAEXENYAHLRAQGGELXEY 74
Query: 80 -TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115
T L +++ T +G YQCV+ N G+ S A L +
Sbjct: 75 TTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 12/83 (14%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
V+P SQ++ G T +L+C G P P W KN P+ E +K+L +V +L Q
Sbjct: 123 VEPTSQKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHE-TKKLYMVPYVDLEHQ--- 177
Query: 89 KTDDGRYQCVVKNVAGTRESTDA 111
G Y C V N R+S D+
Sbjct: 178 ----GTYWCHVYN---DRDSQDS 193
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 180
I P+ V AG + C G + W ++ +P S L + V ++
Sbjct: 21 ITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS-----ELIFNAVHVK 75
Query: 181 DGGEYVCEAEN 191
D G YVC N
Sbjct: 76 DAGFYVCRVNN 86
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGT--NLA 83
F +P+ RV +G A L+C G P P +VW+K G S+RL DG L
Sbjct: 17 FLRRPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLL 73
Query: 84 IQDSRKTDDGRYQCVVKN 101
+ + TD G Y C +N
Sbjct: 74 LTAALPTDAGVYVCRARN 91
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 174
P +R P+ V +G+ +C V G+ V W++ G + P+ L L
Sbjct: 15 PCFLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
+ D G YVC A NA G+ A+A +TV
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTV 104
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 22/151 (14%)
Query: 53 PEPTLVWKKN--GHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG------ 104
P L W KN + E R+ DG L + + + D G Y C +N +
Sbjct: 53 PRINLTWHKNDSARTVPGEEETRMWAQDGA-LWLLPALQEDSGTYVCTTRNASYCDKMSI 111
Query: 105 ---TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECS--VGGDAVLTVHWKRLGSAM 159
E+TDA L + P I+ T ++G ++ + S + + W + +
Sbjct: 112 ELRVFENTDAFLPFISYPQIL-----TLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLL 166
Query: 160 PEDR---MSVLPSRSLQLSDVRLEDGGEYVC 187
+D +SV + L + DV LED G Y C
Sbjct: 167 DKDNEKFLSVRGTTHLLVHDVALEDAGYYRC 197
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 16/126 (12%)
Query: 59 WKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV-AGTRESTDAVLRVLV 117
W K+ +D +N K L + T+L + D D G Y+CV+ G + + + + +
Sbjct: 159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 118 K-------PYIIRGPKDTTVSAGSIIVFECSV---GGDAVLTVHW-----KRLGSAMPED 162
K P II K + S GS + C V G + T+ W + SA P
Sbjct: 219 KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG 278
Query: 163 RMSVLP 168
R++ P
Sbjct: 279 RVTEGP 284
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGT--NLAIQDS 87
P+ RV +G A L+C G P P +VW+K G S+RL DG L + +
Sbjct: 21 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLLLTAA 77
Query: 88 RKTDDGRYQCVVKN 101
TD G Y C +N
Sbjct: 78 LPTDAGVYVCRARN 91
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 174
P +R P+ V +G+ +C V G+ V W++ G + P+ L L
Sbjct: 15 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 74
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
+ D G YVC A NA G+ A+A +TV
Sbjct: 75 TAALPTDAGVYVCRARNAAGEAYAAAAVTV 104
>pdb|2IF7|A Chain A, Crystal Structure Of Ntb-A
pdb|2IF7|B Chain B, Crystal Structure Of Ntb-A
pdb|2IF7|C Chain C, Crystal Structure Of Ntb-A
pdb|2IF7|D Chain D, Crystal Structure Of Ntb-A
Length = 193
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 10/141 (7%)
Query: 64 HPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIR 123
H + + KRL +L + + + D G Y+ + + S+ LR+L + I+
Sbjct: 54 HVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS-YTLRILRQLRNIQ 112
Query: 124 GPKDTTVSAGSI--IVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLE 180
+ + + CSV D ++ W+ LG + +S P+ ++ D R+
Sbjct: 113 VTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALG-----NTLSSQPNLTVSW-DPRIS 166
Query: 181 DGGEYVCEAENAVGKISASAT 201
+Y C AENAV +S S +
Sbjct: 167 SEQDYTCIAENAVSNLSFSVS 187
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 163 RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
R++ S SLQLS++++ED G Y + +S TL +
Sbjct: 63 RLNFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRI 104
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGT--NLAIQDS 87
P+ RV +G A L+C G P P +VW+K G S+RL DG L + +
Sbjct: 20 PRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQ--QLAASERLSFPADGAEHGLLLTAA 76
Query: 88 RKTDDGRYQCVVKN 101
TD G Y C +N
Sbjct: 77 LPTDAGVYVCRARN 90
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS----RSLQL 174
P +R P+ V +G+ +C V G+ V W++ G + P+ L L
Sbjct: 14 PCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLL 73
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTV 204
+ D G YVC A NA G+ A+A +TV
Sbjct: 74 TAALPTDAGVYVCRARNAAGEAYAAAAVTV 103
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SL 172
P+ K + G + F C V G+ ++W + G + R SL
Sbjct: 8 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 67
Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ L+D G Y A N G++S + L VQ+
Sbjct: 68 HTTASTLDDDGNYTIMAANPQGRVSCTGRLMVQA 101
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL--RLVDGT-NLA 83
F ++ K ++ G C G+P+P + W K+G I ++ R +DGT +L
Sbjct: 10 FEMKLKHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 68
Query: 84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRG 124
S DDG Y + N G T R++V+ RG
Sbjct: 69 TTASTLDDDGNYTIMAANPQGRVSCTG---RLMVQAVNQRG 106
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSR------SL 172
P+ K + G + F C V G+ ++W + G + R SL
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSL 68
Query: 173 QLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ L+D G Y A N G+IS + L VQ+
Sbjct: 69 HTTASTLDDDGNYTIMAANPQGRISCTGRLMVQA 102
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL--RLVDGT-NLA 83
F ++ K ++ G C G+P+P + W K+G I ++ R +DGT +L
Sbjct: 11 FEMKLKHYKIFEGMPVTFTC-RVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH 69
Query: 84 IQDSRKTDDGRYQCVVKNVAG 104
S DDG Y + N G
Sbjct: 70 TTASTLDDDGNYTIMAANPQG 90
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain From
Human Cdna
Length = 113
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 150 VHWKRLGSAMPEDRMSVLPS----RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
V W + G + E +L R L L V+LED GEY+CE ++ SAS T+TV
Sbjct: 44 VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEIDDE----SASFTVTVT 99
Query: 206 SKYLKVIH 213
+++I+
Sbjct: 100 EPPVRIIY 107
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKT 90
++Q + G++ + C G+P P ++W K+ + E+S + L DG NL I+ RK
Sbjct: 18 ENQTTSIGESIEVSC-TASGNPPPQIMWFKDNETL-VEDSG-IVLKDGNRNLTIRRVRKE 74
Query: 91 DDGRYQCVVKNVAG 104
D+G Y C +V G
Sbjct: 75 DEGLYTCQACSVLG 88
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 50 RGHPEPTLVWKKNGHP------IDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103
RG+P PTL W NG P I E + + +G L ++G Y + KN
Sbjct: 30 RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC-LLFNKPTHYNNGNYTLIAKNPL 88
Query: 104 GTREST 109
GT T
Sbjct: 89 GTANQT 94
>pdb|1GL4|B Chain B, Nidogen-1 G2PERLECAN IG3 COMPLEX
Length = 98
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 126 KDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVLPSRS------LQLSDVR 178
+ +V G+ + F C+ + T+ W RL + LPSR+ L + +V+
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGK-------LPSRAMDFNGILTIRNVQ 70
Query: 179 LEDGGEYVCEAENAVGKISASATLTVQ 205
D G YVC N +ATL VQ
Sbjct: 71 PSDAGTYVCTGSNMFAMDQGTATLHVQ 97
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT-NLAIQDSRKT 90
++Q + G++ + C G+P P ++W K+ + E+S + L DG NL I+ RK
Sbjct: 674 ENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETL-VEDSG-IVLKDGNRNLTIRRVRKE 730
Query: 91 DDGRYQCVVKNVAG 104
D+G Y C +V G
Sbjct: 731 DEGLYTCQACSVLG 744
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTREST 109
G+P P + W KNG P++ ++ + G L I + + D G Y ++ N ++ ++S
Sbjct: 356 GYPPPEIKWYKNGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILTNPISKEKQSH 411
Query: 110 DAVLRVLVKPYI 121
L V V P I
Sbjct: 412 VVSLVVYVPPQI 423
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN-VAGTREST 109
G+P P + W KNG P++ ++ + G L I + + D G Y ++ N ++ ++S
Sbjct: 226 GYPPPEIKWYKNGIPLESNHTIKA----GHVLTIMEVSERDTGNYTVILTNPISKEKQSH 281
Query: 110 DAVLRVLVKPYI 121
L V V P I
Sbjct: 282 VVSLVVYVPPQI 293
>pdb|2CQV|A Chain A, Solution Structure Of The Eighth Ig-Like Domain Of Human
Myosin Light Chain Kinase
Length = 114
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRS---LQL 174
P II+ P+D V AG + V G +T W + + E + M V S + L +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 67
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
R E G Y EN +G A LTV K
Sbjct: 68 LAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRK 89
P+ Q+V AG++ L G G T W K I + E+ K +G+ L I +R+
Sbjct: 14 PEDQKVRAGESVEL-FGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQ 72
Query: 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
G Y +V+N G+R++ L V+ KP
Sbjct: 73 EHCGCYTLLVENKLGSRQA-QVNLTVVDKP 101
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 34.3 bits (77), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 9/92 (9%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPS-----RSLQ 173
P I+ P++ ++ G + V G V W G + D + + SL
Sbjct: 6 PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLI 65
Query: 174 LSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205
VR D G Y C A+N G+ AT TVQ
Sbjct: 66 FEVVRASDAGAYACVAKNRAGE----ATFTVQ 93
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRES 108
G P P + W NG + ++ ++ + + +L + R +D G Y CV KN AG E+
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG--EA 88
Query: 109 TDAV-LRVLVK 118
T V L VL K
Sbjct: 89 TFTVQLDVLAK 99
>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
pdb|3Q5O|A Chain A, Crystal Structure Of Human Titin Domain M10
pdb|3Q5O|B Chain B, Crystal Structure Of Human Titin Domain M10
Length = 100
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQ 173
+ P I P D ++ G ++ C+ G+ V W G + + R + + L
Sbjct: 4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 63
Query: 174 ---LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ DV+ +DGG Y N G SA+ + ++S
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 99
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
G P P + W G I + R + D T L I D +K D G Y + N G+
Sbjct: 31 GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 90
Query: 108 ST 109
+T
Sbjct: 91 AT 92
>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWK|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
pdb|2WWM|D Chain D, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2Y9R|T Chain T, Crystal Structure Of The M10 Domain Of Titin
Length = 102
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%), Gaps = 6/96 (6%)
Query: 117 VKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG---SAMPEDRMSVLPSRSLQ 173
+ P I P D ++ G ++ C+ G+ V W G + + R + + L
Sbjct: 6 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLT 65
Query: 174 ---LSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ DV+ +DGG Y N G SA+ + ++S
Sbjct: 66 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHIRS 101
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 3/62 (4%)
Query: 51 GHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
G P P + W G I + R + D T L I D +K D G Y + N G+
Sbjct: 33 GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDS 92
Query: 108 ST 109
+T
Sbjct: 93 AT 94
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 33.5 bits (75), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 89 KTDDGRYQCVVKNVAGTRESTDAV-LRVLVKPYIIRGPKDTTVSAGSIIVFECSV----- 142
+ D+G Y C+V G ++ L VLV P ++V+ G+ V CS
Sbjct: 74 RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133
Query: 143 --------GGDAVLTVHWKRLGSAMPEDRMSVLP-SRSLQLSDVRLEDGGEYVCEAENAV 193
G ++LT K+ + M ++ P S L V D GEY C+A+N
Sbjct: 134 PSEYSWFKDGISMLTADAKKTRAFM-NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY 192
Query: 194 G 194
G
Sbjct: 193 G 193
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR------- 88
V G+ A+L C G P W K+G + ++K+ R ++ I
Sbjct: 116 VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDP 175
Query: 89 --KTDDGRYQCVVKNVAGTRESTDA 111
D G Y C +N GT ++A
Sbjct: 176 VTAFDSGEYYCQAQNGYGTAMRSEA 200
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNG--HPID------FENSKRLRLVDGTNLAIQDSRKT 90
G+ A+L C G P W K+G P + F NS + L +
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181
Query: 91 DDGRYQCVVKNVAGTRESTDAV 112
D G Y C +N GT +++AV
Sbjct: 182 DTGEYSCEARNGYGTPMTSNAV 203
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 51/137 (37%), Gaps = 31/137 (22%)
Query: 80 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFE 139
T + + + D G Y C+V G ++ V VK ++ P TV+ I
Sbjct: 68 TGITFKSVTREDTGTYTCMVSEEGG-----NSYGEVKVKLIVLVPPSKPTVN----IPSS 118
Query: 140 CSVGGDAVLTVH-----------WKRLGSAMPEDRMSV--LPSRSLQLSDVRLE------ 180
++G AVLT W + G MP + S + S L+ E
Sbjct: 119 ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPL 178
Query: 181 ---DGGEYVCEAENAVG 194
D GEY CEA N G
Sbjct: 179 SASDTGEYSCEARNGYG 195
>pdb|2E7C|A Chain A, Solution Structure Of The 6th Ig-Like Domain From Human
Myosin-Binding Protein C, Fast-Type
Length = 118
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 48 PPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTR 106
P +G P P +VW K G P+D + +R D T ++ + ++D G Y+ V+ + +
Sbjct: 47 PFQGKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ-IENMK 104
Query: 107 ESTDAVLRVLVK 118
++ +RV+ K
Sbjct: 105 DTATIRIRVVEK 116
>pdb|3EPC|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 1
pdb|3EPD|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 3
pdb|3EPF|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus Type 2
Length = 213
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 67 DFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+ SKRL V +L + R D+G Y C+ S D LRVL K
Sbjct: 56 SYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK 115
Query: 119 PYIIRGPKDTTVSAGSIIVFEC-SVGGDAVLTVHWKRLGSAMPE 161
P + ++ + + C S GG + W MP+
Sbjct: 116 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 159
>pdb|3URO|R Chain R, Poliovirus Receptor Cd155 D1d2
Length = 221
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 67 DFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+ SKRL V +L + R D+G Y C+ S D LRVL K
Sbjct: 57 SYSESKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAK 116
Query: 119 PYIIRGPKDTTVSAGSIIVFEC-SVGGDAVLTVHWKRLGSAMPE 161
P + ++ + + C S GG + W MP+
Sbjct: 117 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 160
>pdb|1Z9M|A Chain A, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
pdb|1Z9M|B Chain B, Crystal Structure Of Nectin-Like Molecule-1 Protein Domain
1
Length = 145
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 13/74 (17%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPSR----SLQ 173
D TV AG +V +C V ++ W A+ ++R+ ++ S S+
Sbjct: 47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSIS 106
Query: 174 LSDVRLEDGGEYVC 187
+S+V L D GEY C
Sbjct: 107 ISNVALADEGEYTC 120
>pdb|1RIH|L Chain L, Crystal Structure Of Fab 14f7, A Unique Anti-Tumor
Antibody Specific For N-Glycolyl Gm3
Length = 214
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK--------RLGSAMPEDRMSVLPSR-- 170
+ + P +V+ G + F C +HW RL +S +PSR
Sbjct: 4 LTQSPATLSVTPGDSVSFSCRASQSISNNLHWYQQRTHESPRLLIKYASQSISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L +S V ED G Y C+ N
Sbjct: 64 GSGSGTDFTLSISSVETEDFGMYFCQQSN 92
>pdb|4FQP|A Chain A, Crystal Structure Of Human Nectin-Like 5 Full Ectodomain
(D1-D3)
Length = 313
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 67 DFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+ SKRL V +L + R D+G Y C+ S D LRVL K
Sbjct: 58 SYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Query: 119 PYIIRGPKDTTVSAGSIIVFEC-SVGGDAVLTVHWKRLGSAMP 160
P + ++ + + C S GG + W MP
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160
>pdb|1DGI|R Chain R, Cryo-Em Structure Of Human Poliovirus(Serotype 1)complexed
With Three Domain Cd155
pdb|1NN8|R Chain R, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|S Chain S, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
pdb|1NN8|T Chain T, Cryoem Structure Of Poliovirus Receptor Bound To
Poliovirus
Length = 302
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 9/103 (8%)
Query: 67 DFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+ SKRL V +L + R D+G Y C+ S D LRVL K
Sbjct: 58 SYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Query: 119 PYIIRGPKDTTVSAGSIIVFEC-SVGGDAVLTVHWKRLGSAMP 160
P + ++ + + C S GG + W MP
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMP 160
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-----PSRS-LQLS 175
++GP G+ + C V T+ W R G +P S + PS S L+++
Sbjct: 22 LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVT 81
Query: 176 DVRLEDGGEYVCEAENAVGKIS 197
D G Y C A N +G+ S
Sbjct: 82 PDSENDFGNYNCTAVNRIGQES 103
>pdb|4DEP|C Chain C, Structure Of The Il-1b Signaling Complex
pdb|4DEP|F Chain F, Structure Of The Il-1b Signaling Complex
Length = 349
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 39/180 (21%)
Query: 54 EPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112
+PT+ W + I +F N + +G NL+ + +++G Y CVV R T +
Sbjct: 154 KPTITWYMGCYKIQNFNNV----IPEGMNLSFLIALISNNGNYTCVVTYPENGR--TFHL 207
Query: 113 LRVL-VK---------PYIIRGPKDTTV---SAGSIIVFECSVGGDAVLTVH---WKRLG 156
R L VK P +I P D V G ++ C+V ++ W +
Sbjct: 208 TRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTID 267
Query: 157 SAMPED-------RMSVLPSRS--------LQLSDVRLED-GGEYVCEAENAVGKISASA 200
P+D S+ SR+ L + V ED YVC A +A G+++ +A
Sbjct: 268 GKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA 327
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 84
F V+P V G +A C P P + W K+ + ++ K ++ +G + L I
Sbjct: 485 FIVKPYGTEVGEGQSANFYCRVIASSP-PVVTWHKDDRELK-QSVKYMKRYNGNDYGLTI 542
Query: 85 QDSRKTDDGRYQCVVKNVAGTRE 107
+ D G Y KN GT+E
Sbjct: 543 NRVKGDDKGEYTVRAKNSYGTKE 565
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 107 ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMPED 162
+ ++A R +VKPY T V G F C V + V W + L ++
Sbjct: 477 DRSEAQPRFIVKPY------GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 530
Query: 163 RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
+ L ++ V+ +D GEY A+N+ G L V
Sbjct: 531 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
>pdb|3O4O|B Chain B, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 73/180 (40%), Gaps = 39/180 (21%)
Query: 54 EPTLVWKKNGHPI-DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112
+PT+ W + I +F N + +G NL+ + +++G Y CVV R T +
Sbjct: 155 KPTITWYMGCYKIQNFNNV----IPEGMNLSFLIALISNNGNYTCVVTYPENGR--TFHL 208
Query: 113 LRVL-VK---------PYIIRGPKDTTV---SAGSIIVFECSVGGDAVLTVH---WKRLG 156
R L VK P +I P D V G ++ C+V ++ W +
Sbjct: 209 TRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTID 268
Query: 157 SAMPED-------RMSVLPSRS--------LQLSDVRLED-GGEYVCEAENAVGKISASA 200
P+D S+ SR+ L + V ED YVC A +A G+++ +A
Sbjct: 269 GKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAA 328
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTN--LAI 84
F V+P V G +A C P P + W K+ + ++ K ++ +G + L I
Sbjct: 379 FIVKPYGTEVGEGQSANFYCRVIASSP-PVVTWHKDDRELK-QSVKYMKRYNGNDYGLTI 436
Query: 85 QDSRKTDDGRYQCVVKNVAGTRE 107
+ D G Y KN GT+E
Sbjct: 437 NRVKGDDKGEYTVRAKNSYGTKE 459
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 107 ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW----KRLGSAMPED 162
+ ++A R +VKPY T V G F C V + V W + L ++
Sbjct: 371 DRSEAQPRFIVKPY------GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYM 424
Query: 163 RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
+ L ++ V+ +D GEY A+N+ G L V
Sbjct: 425 KRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 466
>pdb|3RJD|A Chain A, Crystal Structure Of Fc Ri And Its Implication To High
Affinity Immunoglobulin G Binding
Length = 262
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 66/179 (36%), Gaps = 27/179 (15%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
+Q S+ G+ L C + +++ +NG F + +NL I +
Sbjct: 87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN-------SNLTILKTN 139
Query: 89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA----GSIIVFECSV-- 142
+ +G Y C + G T A + V VK + +V++ G+++ C
Sbjct: 140 ISHNGTYHC---SGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKL 196
Query: 143 -----GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196
G + + +GS R + S Q+ R ED G Y CEA G +
Sbjct: 197 LLQRPGLQLYFSFY---MGSKTLRGRNT---SSEYQILTARREDSGLYWCEAATEDGNV 249
>pdb|4DGI|L Chain L, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 213
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK--------RLGSAMPEDRMSVLPSR-- 170
+ + P +VS G + F C + ++HW RL + +S +PSR
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQNIGTSIHWYQQRTNESPRLIIKYASESISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L ++ V ED +Y C+ N
Sbjct: 64 GSGSGTDFTLSINSVESEDIADYYCQQSN 92
>pdb|2O26|X Chain X, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|Y Chain Y, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|U Chain U, Structure Of A Class Iii Rtk Signaling Assembly
pdb|2O26|W Chain W, Structure Of A Class Iii Rtk Signaling Assembly
Length = 290
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
+L +S R++D G ++C A N G + + TL V K
Sbjct: 252 ETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEK 289
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 50 RGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTRE 107
+G P+P + W +N P+ + + +G L I + + D G Y C N G R+
Sbjct: 30 QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQ 89
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 5/86 (5%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRL-----ED 181
D +V G ++ V G+ V W R + D+ L +R+ D
Sbjct: 14 DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGD 73
Query: 182 GGEYVCEAENAVGKISASATLTVQSK 207
G Y C+A N G A L V+ +
Sbjct: 74 AGFYTCKAVNEYGARQCEARLEVRGE 99
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 44 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVV 99
L CG + W KN + + +K + G NL I + D GRY C V
Sbjct: 148 LYCGILYAKHYNNITWYKNNQELIIDGTKYSQ--SGQNLIIHNPELEDSGRYDCYV 201
>pdb|1H5B|A Chain A, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 154 RLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194
RL SA +R +L + D +LED G Y C AE + G
Sbjct: 58 RLKSAFDSERARY---STLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|2EC8|A Chain A, Crystal Structure Of The Exctracellular Domain Of The
Receptor Tyrosine Kinase, Kit
Length = 524
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK-YLKVIHLL 215
+L +S R+ D G ++C A N G + + TL V K ++ + ++
Sbjct: 274 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI 319
>pdb|1PD6|A Chain A, The Nmr Structure Of Domain C2 Of Human Cardiac Myosin
Binding Protein C
Length = 104
Score = 30.4 bits (67), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 59 WKKNGHPIDFENSKRLRLVDGTN--LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114
W KNG I SK + G L I DD YQCV V G + ST+ ++
Sbjct: 49 WLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV---VGGEKCSTELFVK 103
>pdb|2E9W|A Chain A, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
pdb|2E9W|B Chain B, Crystal Structure Of The Extracellular Domain Of Kit In
Complex With Stem Cell Factor (Scf)
Length = 489
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
+L +S R+ D G ++C A N G + + TL V K
Sbjct: 249 TLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDK 285
>pdb|2EDH|A Chain A, Solution Structure Of The Pdz Domain (3614- 3713 ) From
Human Obscurin
Length = 113
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 109 TDAVLRVLVKPY-IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL 167
T A+L V P G ++ + G+ V C + A + WK + DR S+
Sbjct: 9 TSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMAPVE-WWKGHETLRDGDRHSLR 67
Query: 168 PSRS---LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
+ LQ+ + ED GEY+C GK SA LTV++
Sbjct: 68 QDGARCELQIRGLVAEDAGEYLC----MCGKERTSAMLTVRA 105
>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|B Chain B, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|C Chain C, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|D Chain D, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|E Chain E, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
pdb|4FRW|F Chain F, Crystal Structure Of Human Nectin-4 Extracellular Fragment
D1-D2
Length = 218
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 15/110 (13%)
Query: 77 VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA-GSI 135
+DG+ L ++++ + D+G Y+C V LRVLV P P G
Sbjct: 77 LDGSVL-LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLT 135
Query: 136 IVFECSVGGDAVLTVHW-------------KRLGSAMPEDRMSVLPSRSL 172
+ C+ G +V W K SA ++PSRS+
Sbjct: 136 LAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSM 185
>pdb|2D3V|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor A5
(Lilra5LIR9ILT11)
Length = 196
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 61 KNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV--- 117
K G P ++ L + +I + GRY+C + AG E +D + V+
Sbjct: 39 KEGSPEPWDTQNPLEPKNKARFSIPSXTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFY 98
Query: 118 -KPYIIRGPKDTTVSAGSIIVFEC 140
KP + P V++G + +C
Sbjct: 99 NKPTLSALPSP-VVTSGENVTLQC 121
>pdb|2YWZ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 111
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 169 SRSLQLSDVRLEDGGEYVCEAE 190
S SL++SD+R+ED G Y C+A+
Sbjct: 65 SFSLRISDLRVEDSGTYKCQAD 86
>pdb|2OZ4|L Chain L, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 214
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW--------KRLGSAMPEDRMSVLPSR-- 170
+ + P +VS G + F C ++HW RL + +S +PSR
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTSIHWFQQRINGSPRLLIEYASESISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L ++ V ED +Y C+ N
Sbjct: 64 GSGSGTDFTLTINSVESEDIADYYCQQSN 92
>pdb|3UDW|C Chain C, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
pdb|3UDW|D Chain D, Crystal Structure Of The Immunoreceptor Tigit In Complex
With Poliovirus Receptor (PvrCD155NECL-5) D1 Domain
Length = 118
Score = 30.0 bits (66), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 67 DFENSKRLRLVDG--------TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVK 118
+ SKRL V +L + R D+G Y C+ S D LRVL K
Sbjct: 58 SYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK 117
Query: 119 P 119
P
Sbjct: 118 P 118
>pdb|3MOQ|A Chain A, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|B Chain B, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|C Chain C, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
pdb|3MOQ|D Chain D, Amyloid Beta(18-41) Peptide Fusion With New Antigen
Receptor Variable Domain From Sharks
Length = 126
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 168 PSRSLQLSDVRLEDGGEYVCEA 189
S SL++SD+R+ED G Y C+A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQA 85
>pdb|3QIU|D Chain D, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|D Chain D, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
pdb|3QJH|B Chain B, The Crystal Structure Of The 5c.C7 Tcr
pdb|3QJH|D Chain D, The Crystal Structure Of The 5c.C7 Tcr
Length = 243
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 23/100 (23%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNGHP------IDFENSKRLRLVDGT------------ 80
G A + C P +GH P + W + I+F+N + L+ +D T
Sbjct: 15 GQKAKMRCIPEKGH--PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNS 72
Query: 81 --NLAIQDSRKTDDGRYQCVVK-NVAGTRESTDAVLRVLV 117
+L IQ S D Y C N A + + + R+LV
Sbjct: 73 PCSLEIQSSEAGDSALYLCASSLNNANSDYTFGSGTRLLV 112
>pdb|2Z8W|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 168 PSRSLQLSDVRLEDGGEYVCEA 189
S SL++SD+R+ED G Y C+A
Sbjct: 64 KSFSLRISDLRVEDSGTYKCQA 85
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 56 TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105
++ W ++G + S R R+ G + +QDS D G Y CV + +G+
Sbjct: 33 SINWLRDG--VQLAESNRTRIT-GEEVEVQDSVPADSGLYACVTSSPSGS 79
>pdb|3MLV|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With An Nof V3 Peptide
pdb|3MLV|M Chain M, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With An Nof V3 Peptide
Length = 219
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSVG--GDAVLTVHWKRLGSA----MPED--RMSVLPSR- 170
Y++ P +VS G CS D ++ +++R G + M +D R S +P R
Sbjct: 2 YLLTQPPSVSVSPGQTASISCSGDKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERL 61
Query: 171 ---------SLQLSDVRLEDGGEYVCEAENAVGKISASAT-LTV 204
+L +S + D G+Y C+A +A +S T LTV
Sbjct: 62 SGSKSGKTATLTISGTQSLDEGDYYCQAWDASTGVSGGGTKLTV 105
>pdb|2Z8V|C Chain C, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|D Chain D, Structure Of An Ignar-Ama1 Complex
Length = 116
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 169 SRSLQLSDVRLEDGGEYVCEA 189
S SL++SD+R+ED G Y C+A
Sbjct: 65 SFSLRISDLRVEDSGTYKCQA 85
>pdb|2NCM|A Chain A, Neural Cell Adhesion Molecule, Nmr, 20 Structures
Length = 99
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 31 PKSQRVAAGDTALLECGPPRGHPEPTLVW-KKNGHPIDFENSKRLRLV----DGTNLAIQ 85
P ++ G++ C + + W NG + N +R+ +V D + L I
Sbjct: 9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-PNQQRISVVWNDDDSSTLTIY 67
Query: 86 DSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116
++ D G Y+CVV GT+ +++
Sbjct: 68 NANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 15/191 (7%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQ 85
F+ + ++ V A L C GHP+P + W + G I + K R++ G +
Sbjct: 5 FKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 63
Query: 86 DSRKTDDGR--YQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVF 138
+ TDD YQ N G+ T A L V V P + G G ++
Sbjct: 64 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 122
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQL----SDVRLEDGGEYVCEAENAV 193
+ G + W++ + + V+ +RS + V +D G YV A+N
Sbjct: 123 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 182
Query: 194 GKISASATLTV 204
G + L V
Sbjct: 183 GIDQKTVELDV 193
>pdb|1YY8|A Chain A, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY8|C Chain C, Crystal Structure Of The Fab Fragment From The Monoclonal
Antibody CetuximabERBITUXIMC-C225
pdb|1YY9|C Chain C, Structure Of The Extracellular Domain Of The Epidermal
Growth Factor Receptor In Complex With The Fab Fragment
Of Cetuximab/erbitux/imc- C225
Length = 213
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK--------RLGSAMPEDRMSVLPSR-- 170
+ + P +VS G + F C +HW RL + +S +PSR
Sbjct: 4 LTQSPVILSVSPGERVSFSCRASQSIGTNIHWYQQRTNGSPRLLIKYASESISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L ++ V ED +Y C+ N
Sbjct: 64 GSGSGTDFTLSINSVESEDIADYYCQQNN 92
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 15/181 (8%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQ 85
F+ + ++ V A L C GHP+P + W + G I + K R++ G +
Sbjct: 7 FKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 86 DSRKTDDGR--YQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVF 138
+ TDD YQ N G+ T A L V V P + G G ++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQL----SDVRLEDGGEYVCEAENAV 193
+ G + W++ + + V+ +RS + V +D G YV A+N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 194 G 194
G
Sbjct: 185 G 185
>pdb|1VES|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|1VES|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 169 SRSLQLSDVRLEDGGEYVCEA 189
S SL++SD+R+ED G Y C+A
Sbjct: 65 SFSLRISDLRVEDSGTYKCQA 85
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 74/172 (43%), Gaps = 41/172 (23%)
Query: 29 VQP-KSQRVAAGDTALLEC--------GPPR----GHPEPTLVW-KKNGH----PIDFEN 70
+QP KS VAAG++A+L C GP + P L++ +K GH E+
Sbjct: 7 IQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSES 66
Query: 71 SKRLRLVDGTNLAIQDSRKTDDGRYQCV----------VKNVAGTRESTDAVLRVLVKPY 120
+KR + +++I + D G Y CV K+ AGT L V KP
Sbjct: 67 TKRENM--DFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTE------LSVRAKPS 118
Query: 121 --IIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRMSVLP 168
++ GP + + F C G + +T+ W + G+ + + + +V P
Sbjct: 119 APVVSGPA-ARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDP 169
>pdb|3MLU|L Chain L, Crystal Structure Of Anti-Hiv-1 V3 Fab 2557 In Complex
With A Zam18 V3 Peptide
Length = 218
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 19/104 (18%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSVG--GDAVLTVHWKRLGSA----MPED--RMSVLPSR- 170
Y++ P +VS G CS D ++ +++R G + M +D R S +P R
Sbjct: 1 YLLTQPPSVSVSPGQTASISCSGDKLDDKYVSWYYQRPGQSPVLLMYQDFKRPSGIPERL 60
Query: 171 ---------SLQLSDVRLEDGGEYVCEAENAVGKISASAT-LTV 204
+L +S + D G+Y C+A +A +S T LTV
Sbjct: 61 SGSKSGKTATLTISGTQSLDEGDYYCQAWDASTGVSGGGTKLTV 104
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 32 KSQRVAAGDTAL----LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
K + AGD L +E + P L W K+ P+ +N + D L + +
Sbjct: 112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNV 169
Query: 88 RKTDDGRYQC-VVKNVAGTRESTDAVLRVLV-------KPYIIRGPKDTT-VSAGSIIVF 138
+ G Y C G + V+ + +P I+ +T V GS I
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED 162
C+V G +WK GS + ED
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDED 253
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 56 TLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113
T+ W K+ P+ E + R+ L ++ D G Y CVV+N + L
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRN-------SSYCL 88
Query: 114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL 148
R+ + + + +A +I + V GD L
Sbjct: 89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 32 KSQRVAAGDTAL----LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
K + AGD L +E + P L W K+ P+ +N + D L + +
Sbjct: 109 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNV 166
Query: 88 RKTDDGRYQC-VVKNVAGTRESTDAVLRVLV-------KPYIIRGPKDTT-VSAGSIIVF 138
+ G Y C G + V+ + +P I+ +T V GS I
Sbjct: 167 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 226
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED 162
C+V G +WK GS + ED
Sbjct: 227 ICNVTGQLSDIAYWKWNGSVIDED 250
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 56 TLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113
T+ W K+ P+ E + R+ L ++ D G Y CVV+N + L
Sbjct: 34 TITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRN-------SSYCL 85
Query: 114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL 148
R+ + + + +A +I + V GD L
Sbjct: 86 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 120
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRS-LQLSDVRLEDGGE 184
+TTV + C + D + W ++ +RM++ + S L++ ++ ED GE
Sbjct: 119 NTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 185 YVCEAENAVG 194
Y CE N V
Sbjct: 178 YQCEISNPVS 187
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 70 NSKRLRLVDGTNLAIQDS-------RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
NS+ L+L + L+ +S ++ D G YQC + N R S L ++ P
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|3QIU|C Chain C, Crystal Structure Of The 226 Tcr In Complex With MccI-Ek
pdb|3QIW|C Chain C, Crystal Structure Of The 226 Tcr In Complex With
Mcc-P5eI-Ek
Length = 205
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKV 211
+L + D +LED G Y C AE + G+ T+ YL +
Sbjct: 73 TLHIRDAQLEDSGTYFCAAEPSSGQKLVFGQGTILKVYLHI 113
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 32 KSQRVAAGDTAL----LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
K + AGD L +E + P L W K+ P+ +N + D L + +
Sbjct: 112 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNV 169
Query: 88 RKTDDGRYQC-VVKNVAGTRESTDAVLRVLV-------KPYIIRGPKDTT-VSAGSIIVF 138
+ G Y C G + V+ + +P I+ +T V GS I
Sbjct: 170 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 229
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED 162
C+V G +WK GS + ED
Sbjct: 230 ICNVTGQLSDIAYWKWNGSVIDED 253
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 56 TLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113
T+ W K+ P+ E + R+ L ++ D G Y CVV+N + L
Sbjct: 37 TITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRN-------SSYCL 88
Query: 114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL 148
R+ + + + +A +I + V GD L
Sbjct: 89 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 123
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMP-EDRMSVLPSRS-LQLSDVRLEDGGE 184
+TTV + C + D + W ++ +RM++ + S L++ ++ ED GE
Sbjct: 119 NTTVKELDSVTLTC-LSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGE 177
Query: 185 YVCEAENAVG 194
Y CE N V
Sbjct: 178 YQCEISNPVS 187
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 70 NSKRLRLVDGTNLAIQDS-------RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
NS+ L+L + L+ +S ++ D G YQC + N R S L ++ P
Sbjct: 146 NSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
>pdb|2DLT|A Chain A, Solution Structure Of The Ig-Like Domain(433- 525) Of
Murine Myosin-Binding Protein C, Fast-Type
Length = 106
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLP---SRSLQLSD 176
+++ D TV A VF+C V D +T W + G + P R+++ L + D
Sbjct: 11 VLQDIADLTVKAAEQAVFKCEV-SDEKVTGKWYKNGVEVRPSKRITISHVGRFHKLVIDD 69
Query: 177 VRLEDGGEY 185
VR ED G+Y
Sbjct: 70 VRPEDEGDY 78
>pdb|4EXP|X Chain X, Structure Of Mouse Interleukin-34 In Complex With Mouse
Fms
Length = 283
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
R+L L+ V +D G Y C A N VG +A+ V
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|3BIK|A Chain A, Crystal Structure Of The Pd-1PD-L1 Complex
pdb|3BIS|A Chain A, Crystal Structure Of The Pd-L1
pdb|3BIS|B Chain B, Crystal Structure Of The Pd-L1
Length = 222
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 30/97 (30%)
Query: 120 YIIRGPKD-TTVSAGSIIVFECSVGGD-----AVLTVHWK-------------------- 153
+ + PKD V GS + EC + A L V+W+
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 154 ---RLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVC 187
R + + +D++S L + +LQ++DV+L+D G Y C
Sbjct: 62 SSYRQRARLLKDQLS-LGNAALQITDVKLQDAGVYRC 97
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 15/144 (10%)
Query: 32 KSQRVAAGDTAL----LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87
K + AGD L +E + P L W K+ P+ +N + D L + +
Sbjct: 114 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNV 171
Query: 88 RKTDDGRYQC-VVKNVAGTRESTDAVLRVLV-------KPYIIRGPKDTT-VSAGSIIVF 138
+ G Y C G + V+ + +P I+ +T V GS I
Sbjct: 172 AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQL 231
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED 162
C+V G +WK GS + ED
Sbjct: 232 ICNVTGQLSDIAYWKWNGSVIDED 255
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 10/95 (10%)
Query: 56 TLVWKKNGH--PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113
T+ W K+ P+ E + R+ L ++ D G Y CVV+N + L
Sbjct: 39 TITWYKDDSKTPVSTEQASRIHQ-HKEKLWFVPAKVEDSGHYYCVVRN-------SSYCL 90
Query: 114 RVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL 148
R+ + + + +A +I + V GD L
Sbjct: 91 RIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGL 125
>pdb|3SBW|C Chain C, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Human Pd-L1
Length = 222
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 30/97 (30%)
Query: 120 YIIRGPKD-TTVSAGSIIVFECSVGGD-----AVLTVHWK-------------------- 153
+ + PKD V GS + EC + A L V+W+
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 154 ---RLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVC 187
R + + +D++S L + +LQ++DV+L+D G Y C
Sbjct: 62 SSYRQRARLLKDQLS-LGNAALQITDVKLQDAGVYRC 97
>pdb|3QIB|D Chain D, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
Length = 270
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 22/80 (27%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNGHP------IDFENSKRLRLVDGT------------ 80
G A + C P +GH P + W + I+F+N + L+ +D T
Sbjct: 42 GQKAKMRCIPEKGH--PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNS 99
Query: 81 --NLAIQDSRKTDDGRYQCV 98
+L IQ S D Y C
Sbjct: 100 PCSLEIQSSEAGDSALYLCA 119
>pdb|3HG1|E Chain E, Germline-Governed Recognition Of A Cancer Epitope By An
Immunodominant Human T Cell Receptor
Length = 244
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 31/93 (33%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR-------------------------- 154
I + P GS + EC+V G + ++W R
Sbjct: 4 IHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQN 63
Query: 155 LGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVC 187
L ++ P+DR +L S+ L LS D G Y+C
Sbjct: 64 LSASRPQDRQFILSSKKLLLS-----DSGFYLC 91
>pdb|3EJJ|X Chain X, Structure Of M-Csf Bound To The First Three Domains Of Fms
Length = 289
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204
R+L L+ V +D G Y C A N VG +A+ V
Sbjct: 245 RALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279
>pdb|3FN3|A Chain A, Dimeric Structure Of Pd-L1
pdb|3FN3|B Chain B, Dimeric Structure Of Pd-L1
Length = 221
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 30/97 (30%)
Query: 120 YIIRGPKD-TTVSAGSIIVFECSVGGD-----AVLTVHWK-------------------- 153
+ + PKD V GS + EC + A L V+W+
Sbjct: 2 FTVTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQH 61
Query: 154 ---RLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVC 187
R + + +D++S L + +LQ++DV+L+D G Y C
Sbjct: 62 SSYRQRARLLKDQLS-LGNAALQITDVKLQDAGVYRC 97
>pdb|3QJF|B Chain B, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|D Chain D, Crystal Structure Of The 2b4 Tcr
Length = 244
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 22/80 (27%)
Query: 39 GDTALLECGPPRGHPEPTLVWKKNGHP------IDFENSKRLRLVDGT------------ 80
G A + C P +GH P + W + I+F+N + L+ +D T
Sbjct: 16 GQKAKMRCIPEKGH--PVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNS 73
Query: 81 --NLAIQDSRKTDDGRYQCV 98
+L IQ S D Y C
Sbjct: 74 PCSLEIQSSEAGDSALYLCA 93
>pdb|2YWY|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|B Chain B, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|C Chain C, Structure Of New Antigen Receptor Variable Domain From
Sharks
pdb|2YWY|D Chain D, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 113
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 16/85 (18%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSV--GGDAVLTVHWKR--LGSAMPEDRMSV--------- 166
++ + P+ T G + C++ D + W R LGS E ++S+
Sbjct: 2 WVDQTPRSVTKETGESLTINCALKNAADDLERTDWYRTTLGS-TNEQKISIGGRYVETVN 60
Query: 167 --LPSRSLQLSDVRLEDGGEYVCEA 189
S SL++ D+R+ED G Y C A
Sbjct: 61 KGSKSFSLRIRDLRVEDSGTYKCGA 85
>pdb|2DM7|A Chain A, Solution Structure Of The 14th Ig-Like Domain Of Human
Kiaa1556 Protein
Length = 108
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS----LQLSDVRLED 181
K S G+ +C + V V WK+ + + L LQ+ D+ + D
Sbjct: 16 KTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73
Query: 182 GGEYVCEAENAVGKISASATLTVQS 206
GEY C G+ SATLTV++
Sbjct: 74 AGEYSC----MCGQERTSATLTVRA 94
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 70/181 (38%), Gaps = 15/181 (8%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRLVDGTNLAIQ 85
F+ + ++ V A L C GHP+P + W + G I + K R++ G +
Sbjct: 7 FKEELRNLNVRYQSNATLVC-KVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLI 65
Query: 86 DSRKTDDGR--YQCVVKNVAGTRESTDAVLRVLVK-----PYIIRGPKDTTVSAGSIIVF 138
+ TDD YQ N G+ T A L V V P + G G ++
Sbjct: 66 IASVTDDDATVYQVRATNQGGSVSGT-ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 139 ECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQL----SDVRLEDGGEYVCEAENAV 193
+ G + W++ + + V+ +RS + V +D G YV A+N
Sbjct: 125 KIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRF 184
Query: 194 G 194
G
Sbjct: 185 G 185
>pdb|1K4D|B Chain B, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|B Chain B, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|L Chain L, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|A Chain A, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|A Chain A, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|A Chain A, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|1S5H|A Chain A, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
pdb|2BOB|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|B Chain B, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|1ZWI|B Chain B, Structure Of Mutant Kcsa Potassium Channel
pdb|2ATK|B Chain B, Structure Of A Mutant Kcsa K+ Channel
pdb|2H8P|B Chain B, Structure Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HG5|B Chain B, Cs+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
pdb|2HJF|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2IH1|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|B Chain B, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2DWD|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|B Chain B, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
pdb|2HVJ|B Chain B, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|B Chain B, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|B Chain B, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|B Chain B, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|2NLJ|A Chain A, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
pdb|2P7T|B Chain B, Crystal Structure Of Kcsa Mutant
pdb|2JK5|B Chain B, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|B Chain B, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
pdb|3GB7|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|B Chain B, Potassium Channel Kcsa-Fab Complex In Li+ And K+
pdb|3F5W|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|B Chain B, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|B Chain B, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|B Chain B, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|B Chain B, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|B Chain B, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3HPL|B Chain B, Kcsa E71h-F103a Mutant In The Closed State
pdb|3FB7|B Chain B, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
pdb|3OR6|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
pdb|3OR7|B Chain B, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
pdb|3OGC|B Chain B, Kcsa E71a Variant In Presence Of Na+
pdb|3STL|B Chain B, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
pdb|3STZ|B Chain B, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 212
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK--------RLGSAMPEDRMSVLPSR-- 170
+ + P +VS G + F C +HW RL + +S +PSR
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L ++ V ED Y C+ N
Sbjct: 64 GSGSGTDFTLSINSVESEDIANYYCQQSN 92
>pdb|2HFE|B Chain B, Rb+ Complex Of A K Channel With An Amide To Ester
Substitution In The Selectivity Filter
Length = 211
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 18/89 (20%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWK--------RLGSAMPEDRMSVLPSR-- 170
+ + P +VS G + F C +HW RL + +S +PSR
Sbjct: 4 LTQSPAILSVSPGERVSFSCRASQSIGTDIHWYQQRTNGSPRLLIKYASESISGIPSRFS 63
Query: 171 --------SLQLSDVRLEDGGEYVCEAEN 191
+L ++ V ED Y C+ N
Sbjct: 64 GSGSGTDFTLSINSVESEDIANYYCQQSN 92
>pdb|1H5B|C Chain C, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVG 194
+L + D +LED G Y C AE + G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|1H5B|B Chain B, T Cell Receptor Valpha11 (Av11s5) Domain
pdb|1H5B|D Chain D, T Cell Receptor Valpha11 (Av11s5) Domain
Length = 113
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVG 194
+L + D +LED G Y C AE + G
Sbjct: 72 TLHIRDAQLEDSGTYFCAAEASSG 95
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGE 184
P+ V+ G + +C + AV++ W + G + + +VL LQ+ D G
Sbjct: 8 PEAYVVAPGESLELQCMLKDAAVIS--WTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGL 65
Query: 185 YVCEAENAV 193
Y C A V
Sbjct: 66 YACTAARTV 74
>pdb|3O3U|N Chain N, Crystal Structure Of Human Receptor For Advanced Glycation
Endproducts (Rage)
Length = 581
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 TVHWKRLG--SAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
T WK L P D ++ VLP+ SL L V ++D G + C+A N GK + S
Sbjct: 408 TEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS 461
>pdb|2E5E|A Chain A, Solution Structure Of Variable-Type Domain Of Human
Receptor For Advanced Glycation Endproducts
Length = 101
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 TVHWKRLG--SAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
T WK L P D ++ VLP+ SL L V ++D G + C+A N GK + S
Sbjct: 38 TEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS 91
>pdb|2ENS|A Chain A, Solution Structure Of The Third Ig-Like Domain From Human
Advanced Glycosylation End Product-Specific Receptor
Length = 96
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
V+P+ VA G T L C P P P + W K+G L L L + +
Sbjct: 15 VEPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG--------VPLPLPPSPVLILPEIG 65
Query: 89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
D G Y CV + + + + AV +++P
Sbjct: 66 PQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM----------PEDRMSVLP 168
P I + TV GS F V G W + G + PED +
Sbjct: 6 PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVC--- 62
Query: 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
L + DV ED + +A N G+ S+ A L VQ+K
Sbjct: 63 --ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
>pdb|2L7U|A Chain A, Structure Of Cel-Pep-Rage V Domain Complex
Length = 105
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 TVHWKRLG--SAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
T WK L P D ++ VLP+ SL L V ++D G + C+A N GK + S
Sbjct: 38 TEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS 91
>pdb|3RY6|C Chain C, Complex Of Fcgammariia (Cd32) And The Fc Of Human Igg1
Length = 167
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 19/181 (10%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
+++P V D+ L C R ++ W NG+ I R N
Sbjct: 4 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN----- 58
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
D G Y C G +D V ++ +++ G I+ C D
Sbjct: 59 ----DSGEYTC----QTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDK 110
Query: 147 VLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTV 204
L V + + G + R+ + + G+Y C S+ T+TV
Sbjct: 111 PLVKVTFFQNGKSQKFSRL----DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 166
Query: 205 Q 205
Q
Sbjct: 167 Q 167
>pdb|3SKU|E Chain E, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|D Chain D, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
pdb|3SKU|F Chain F, Herpes Simplex Virus Glycoprotein D Bound To The Human
Receptor Nectin-1
Length = 319
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY 185
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 39 KSTNGSKQNVAIYNPSMG-VSVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 92
Query: 186 VCE-AENAVGKISASATLTVQSK 207
+CE A G + LTV +K
Sbjct: 93 ICEFATFPTGNRESQLNLTVMAK 115
>pdb|3CJJ|A Chain A, Crystal Structure Of Human Rage Ligand-Binding Domain
Length = 219
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 TVHWKRLG--SAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
T WK L P D ++ VLP+ SL L V ++D G + C+A N GK + S
Sbjct: 37 TEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS 90
>pdb|2LE9|A Chain A, Ragec2-S100a13 Tetrameric Complex
pdb|2LE9|D Chain D, Ragec2-S100a13 Tetrameric Complex
Length = 93
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Query: 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88
V+P+ VA G T L C P P P + W K+G L L L + +
Sbjct: 8 VEPEGGAVAPGGTVTLTCEVPA-QPSPQIHWMKDG--------VPLPLPPSPVLILPEIG 58
Query: 89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP 119
D G Y CV + + + + AV +++P
Sbjct: 59 PQDQGTYSCVATHSSHGPQESRAVSISIIEP 89
>pdb|3RY5|A Chain A, Three-Dimensional Structure Of Glycosylated Fcgammariia
(High- Responder Polymorphism)
Length = 170
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 19/181 (10%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
+++P V D+ L C R ++ W NG+ I R N
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN----- 61
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
D G Y C G +D V ++ +++ G I+ C D
Sbjct: 62 ----DSGEYTCQT----GQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDK 113
Query: 147 VLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTV 204
L V + + G + R+ + + G+Y C S+ T+TV
Sbjct: 114 PLVKVTFFQNGKSQKFSRL----DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Query: 205 Q 205
Q
Sbjct: 170 Q 170
>pdb|3S58|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S58|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|A Chain A, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
pdb|3S59|B Chain B, Rage Recognizes Nucleic Acids And Promotes Inflammatory
Responses To Dna
Length = 223
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 149 TVHWKRLG--SAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199
T WK L P D ++ VLP+ SL L V ++D G + C+A N GK + S
Sbjct: 40 TEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKS 93
>pdb|3MBE|C Chain C, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
pdb|3MBE|G Chain G, Tcr 21.30 In Complex With Mhc Class Ii I-Ag7hel(11-27)
Length = 229
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 171 SLQLSDVRLEDGGEYVCEAENA 192
+L + D +LED G Y C AE+
Sbjct: 71 TLHIKDAQLEDSGTYFCAAEDG 92
>pdb|3D5O|F Chain F, Structural Recognition And Functional Activation Of Fcrr
By Innate Pentraxins
Length = 177
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 19/181 (10%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
+++P V D+ L C R ++ W NG+ I R N
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN----- 61
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
D G Y C G +D V ++ +++ G I+ C D
Sbjct: 62 ----DSGEYTC----QTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDK 113
Query: 147 VLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTV 204
L V + + G + R+ + + G+Y C S+ T+TV
Sbjct: 114 PLVKVTFFQNGKSQKFSRL----DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Query: 205 Q 205
Q
Sbjct: 170 Q 170
>pdb|4FMF|A Chain A, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|B Chain B, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|C Chain C, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
pdb|4FMF|D Chain D, Crystal Structure Of Human Nectin-1 Full Ectodomain
(D1-D3)
Length = 313
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY 185
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 39 KSTNGSKQNVAIYNPSMG-VSVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 92
Query: 186 VCE-AENAVGKISASATLTVQSK 207
+CE A G + LTV +K
Sbjct: 93 ICEFATFPTGNRESQLNLTVMAK 115
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 43/170 (25%)
Query: 78 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYII-RGPKDTTVSAGSII 136
DG+ L +QD +K D+G Y C ++ ++ V++ V+ +++ P+D V G
Sbjct: 83 DGS-LLLQDVQKADEGIYTCEIR-----LKNESMVMKKPVELWVLPEEPRDLRVRVGDTT 136
Query: 137 VFECSVGGDA---VLTVHWK-RLGSAMPEDRMSVLPSR---------------------- 170
CS+ V V+W GS E+ + S
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196
Query: 171 -----SLQLSDVRLEDGGEYVCEAENAVGKISASATL---TVQSKYLKVI 212
S++L V+ D G Y C VGK+ + T+ VQ ++ + I
Sbjct: 197 SRNDGSIKLQTVKESDQGIYTCSI--YVGKLESRKTIVLHVVQDEFQRTI 244
>pdb|1H9V|A Chain A, Human Fc-Gamma-Receptor Iia (Fcgriia), Monoclinic
Length = 172
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 19/181 (10%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQD 86
+++P V D+ L C R ++ W NG+ I R N
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN----- 61
Query: 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA 146
D G Y C G +D V ++ +++ G I+ C D
Sbjct: 62 ----DSGEYTC----QTGQTSLSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDK 113
Query: 147 VLT-VHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS-ATLTV 204
L V + + G + R+ + + G+Y C S+ T+TV
Sbjct: 114 PLVKVTFFQNGKSQKFSRL----DPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169
Query: 205 Q 205
Q
Sbjct: 170 Q 170
>pdb|3ALP|A Chain A, Cell Adhesion Protein
pdb|3ALP|B Chain B, Cell Adhesion Protein
pdb|3U83|A Chain A, Crystal Structure Of Nectin-1
Length = 331
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY 185
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 54 KSTNGSKQNVAIYNPSMG-VSVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 107
Query: 186 VCE-AENAVGKISASATLTVQSK 207
+CE A G + LTV +K
Sbjct: 108 ICEFATFPTGNRESQLNLTVMAK 130
>pdb|3U82|B Chain B, Binding Of Herpes Simplex Virus Glycoprotein D To Nectin-1
Exploits Host Cell Adhesion
Length = 317
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 7/83 (8%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEY 185
K T S ++ ++ S+G +VL + +R+ P +++LS + LED G Y
Sbjct: 40 KSTNGSKQNVAIYNPSMG-VSVLAPYRERVEFLRPS-----FTDGTIRLSRLELEDEGVY 93
Query: 186 VCE-AENAVGKISASATLTVQSK 207
+CE A G + LTV +K
Sbjct: 94 ICEFATFPTGNRESQLNLTVMAK 116
>pdb|3PIQ|L Chain L, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|B Chain B, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|D Chain D, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|F Chain F, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|I Chain I, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
pdb|3PIQ|K Chain K, Crystal Structure Of Human 2909 Fab, A Quaternary
Structure-Specific Antibody Against Hiv-1
Length = 211
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW--KRLGSA------MPEDRMSVLPSR- 170
Y++ P +V+ G C A VHW ++ G A +DR S +P R
Sbjct: 2 YVLTQPPSVSVAPGKTARITCGGNNIANKNVHWYQQKPGQAPVLVIYYDDDRPSGIPDRF 61
Query: 171 ---------SLQLSDVRLEDGGEYVCE 188
+L +S V D +Y C+
Sbjct: 62 SGSNSGNTATLTISRVEAGDEADYYCQ 88
>pdb|3Q6F|A Chain A, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6F|C Chain C, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6F|E Chain E, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6F|G Chain G, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6F|I Chain I, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
pdb|3Q6F|K Chain K, Crystal Structure Of Fab Of Human Mab 2909 Specific For
Quaternary Neutralizing Epitope Of Hiv-1 Gp120
Length = 213
Score = 27.7 bits (60), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 18/87 (20%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHW--KRLGSA------MPEDRMSVLPSR- 170
Y++ P +V+ G C A VHW ++ G A +DR S +P R
Sbjct: 2 YVLTQPPSVSVAPGKTARITCGGNNIANKNVHWYQQKPGQAPVLVIYYDDDRPSGIPDRF 61
Query: 171 ---------SLQLSDVRLEDGGEYVCE 188
+L +S V D +Y C+
Sbjct: 62 SGSNSGNTATLTISRVEAGDEADYYCQ 88
>pdb|3QIB|C Chain C, Crystal Structure Of The 2b4 Tcr In Complex With MccI-Ek
pdb|3QJF|A Chain A, Crystal Structure Of The 2b4 Tcr
pdb|3QJF|C Chain C, Crystal Structure Of The 2b4 Tcr
Length = 207
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 171 SLQLSDVRLEDGGEYVCEAENAVG 194
+L + D +LED G Y C A A G
Sbjct: 73 TLHIRDAQLEDSGTYFCAALRATG 96
>pdb|1DR9|A Chain A, Crystal Structure Of A Soluble Form Of B7-1 (Cd80)
Length = 201
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 46 CGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVK 100
C G PEP L W +NG ++ N+ + + A+ D T + + C++K
Sbjct: 128 CSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
>pdb|2K1M|A Chain A, 3d Nmr Structure Of Domain Cc0 Of Cardiac Myosin Binding
Protein C (Mybpc)
Length = 95
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT--NLAI 84
F +P+S VAAG A+ E R + + W++ G I N L +GT L +
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETERAGVK--VRWQRGGSDISASNKYGL-ATEGTRHTLTV 67
Query: 85 QDSRKTDDGRYQCV 98
++ D G Y +
Sbjct: 68 REVGPADQGSYAVI 81
>pdb|4D9Q|E Chain E, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9Q|H Chain H, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 217
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK 210
LQ+S ++ ED Y CE E V +TV S K
Sbjct: 81 LQISSLKAEDTAVYYCEREGGVNNWGQGTLVTVSSASTK 119
>pdb|4D9R|H Chain H, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
pdb|4D9R|E Chain E, Inhibiting Alternative Pathway Complement Activation By
Targeting The Exosite On Factor D
Length = 218
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLK 210
LQ+S ++ ED Y CE E V +TV S K
Sbjct: 81 LQISSLKAEDTAVYYCEREGGVNNWGQGTLVTVSSASTK 119
>pdb|2CR6|A Chain A, Solution Structure Of The Ig Domain (2998-3100) Of Human
Obscurin
Length = 115
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQL 174
+II +D V GS F C + VHW + + + ++ + ++ L L
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTL 74
Query: 175 SDVRLEDGGEYVCEAENAVGKISASATLTVQSK 207
+ L+D G EA G ASA L V K
Sbjct: 75 RQLALKDSGTIYFEA----GDQRASAALRVTEK 103
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like Domain(2826-2915)
From Human Obscurin
Length = 103
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 9/91 (9%)
Query: 121 IIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSVLPSRSLQLSDVR- 178
II+ +D V+ G + C + A VHW + A+ + V+ ++ + +R
Sbjct: 11 IIKPLEDQWVAPGEDVELRCELS-RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRG 69
Query: 179 --LEDGGEYVCEAENAVGKISASATLTVQSK 207
L+D GEY CE E + ++A+L V+ K
Sbjct: 70 ASLKDAGEYTCEVEAS----KSTASLHVEEK 96
>pdb|1M71|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide
pdb|1M7D|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Trisaccharide
pdb|1M7I|B Chain B, Crystal Structure Of A Monoclonal Fab Specific For
Shigella Flexneri Y Lipopolysaccharide Complexed With A
Pentasaccharide
Length = 220
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKIS----------ASATLTVQSKY 208
LQ++++R ED G Y C AVG + +SAT T S Y
Sbjct: 83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVY 129
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRS-----LQLSDVRL 179
P T+ G + C+V GD V W + A+ D L + ++ V
Sbjct: 229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVST 288
Query: 180 EDGGEYVCEAENAVGKISASATLTV 204
D G+Y +N G ++ T++V
Sbjct: 289 ADSGKYGLVVKNKYGSETSDFTVSV 313
>pdb|1I8L|A Chain A, Human B7-1CTLA-4 Co-Stimulatory Complex
pdb|1I8L|B Chain B, Human B7-1CTLA-4 Co-Stimulatory Complex
Length = 208
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 46 CGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVK 100
C G PEP L W +NG ++ N+ + + A+ D T + + C++K
Sbjct: 128 CSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIK 185
>pdb|1PZ5|B Chain B, Structural Basis Of Peptide-Carbohydrate Mimicry In An
Antibody Combining Site
Length = 220
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 10/47 (21%)
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKIS----------ASATLTVQSKY 208
LQ++++R ED G Y C AVG + +SAT T S Y
Sbjct: 83 LQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVY 129
>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|B Chain B, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|C Chain C, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
pdb|3M45|D Chain D, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2
Length = 108
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 13/75 (17%)
Query: 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS---------AMPEDRMSVLPSR----SL 172
++ TV G + C V + ++ W A+ ++R+ ++ + S+
Sbjct: 14 QNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSI 73
Query: 173 QLSDVRLEDGGEYVC 187
+SDV L D G+Y C
Sbjct: 74 SVSDVSLSDEGQYTC 88
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 56 TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105
++ W ++G + S R R+ G + ++DS D G Y CV + +G+
Sbjct: 39 SINWLRDG--VQLVESNRTRIT-GEEVEVRDSIPADSGLYACVTSSPSGS 85
>pdb|2BK8|A Chain A, M1 Domain From Titin
Length = 97
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 68 FENSKRLRLV--DGTN-LAIQDSRKTDDGRYQCVVKNVAGTRES 108
ENS++ + DG L ++D K DDG Y+C V N G S
Sbjct: 43 LENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSS 86
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIV 137
+ + ++ K D G+Y+C+++ G S A L V P I P+ +V A + +
Sbjct: 224 SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWI 280
>pdb|2COQ|A Chain A, Structure Of New Antigen Receptor Variable Domain From
Sharks
Length = 108
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 169 SRSLQLSDVRLEDGGEYVCEA 189
S SL + D+R+ED G Y C+A
Sbjct: 65 SASLTIRDLRVEDSGTYKCKA 85
>pdb|2I26|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I26|P Chain P, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain In Complex With
Lysozyme
pdb|2I27|N Chain N, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
pdb|2I27|O Chain O, Crystal Structure Analysis Of The Nurse Shark New Antigen
Receptor Ancestral Variable Domain
Length = 121
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISA 198
S SL+++D+ +ED G Y C+ E+ G A
Sbjct: 65 SFSLRINDLTVEDSGTYRCKPESRYGSYDA 94
>pdb|2EDT|A Chain A, Solution Structure Of The Ig-Like Domain (3449-3537) From
Human Obscurin
Length = 102
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 172 LQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206
LQ+ + + D GEY+C G+ SATLT+++
Sbjct: 64 LQICGLAMADAGEYLC----VCGQERTSATLTIRA 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,765,889
Number of Sequences: 62578
Number of extensions: 236146
Number of successful extensions: 1684
Number of sequences better than 100.0: 209
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 1117
Number of HSP's gapped (non-prelim): 384
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)