Query psy573
Match_columns 216
No_of_seqs 198 out of 1545
Neff 11.7
Searched_HMMs 46136
Date Fri Aug 16 16:32:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy573.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/573hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 1.4E-28 2.9E-33 195.0 20.1 199 12-213 320-522 (1051)
2 KOG3513|consensus 100.0 6.3E-27 1.4E-31 185.7 19.5 186 24-213 240-430 (1051)
3 KOG4222|consensus 99.9 2.4E-26 5.2E-31 181.6 13.5 210 4-213 111-321 (1281)
4 KOG4221|consensus 99.9 4.4E-25 9.5E-30 175.5 18.9 202 9-214 126-335 (1381)
5 KOG4194|consensus 99.9 2.8E-25 6E-30 166.3 14.7 192 23-214 502-713 (873)
6 KOG4194|consensus 99.9 7.1E-24 1.5E-28 158.9 15.5 196 10-208 599-799 (873)
7 PHA02826 IL-1 receptor-like pr 99.9 6.7E-23 1.5E-27 141.8 19.1 155 31-193 29-211 (227)
8 KOG4221|consensus 99.9 8.8E-23 1.9E-27 162.7 13.7 191 13-206 221-417 (1381)
9 PHA02785 IL-beta-binding prote 99.9 2.7E-21 5.8E-26 141.8 19.6 180 14-197 110-319 (326)
10 PHA02785 IL-beta-binding prote 99.9 3.2E-20 6.9E-25 136.2 18.1 167 33-205 35-216 (326)
11 KOG4222|consensus 99.9 1.6E-20 3.4E-25 149.2 13.5 194 19-213 26-231 (1281)
12 cd05851 Ig3_Contactin-1 Third 99.8 2.6E-18 5.7E-23 102.1 12.1 88 118-205 1-88 (88)
13 cd05762 Ig8_MLCK Eighth immuno 99.8 2.4E-18 5.3E-23 104.2 11.4 93 119-211 1-97 (98)
14 cd04968 Ig3_Contactin_like Thi 99.7 1.8E-16 3.9E-21 94.5 12.0 85 120-204 3-87 (88)
15 cd05762 Ig8_MLCK Eighth immuno 99.7 1.8E-16 3.9E-21 96.0 11.2 91 25-119 1-94 (98)
16 cd05728 Ig4_Contactin-2-like F 99.7 1.3E-16 2.8E-21 94.3 10.0 82 123-204 4-85 (85)
17 cd05745 Ig3_Peroxidasin Third 99.7 9.6E-17 2.1E-21 92.4 8.9 73 132-204 1-74 (74)
18 cd05851 Ig3_Contactin-1 Third 99.7 2.1E-16 4.7E-21 93.9 10.4 87 24-115 1-87 (88)
19 cd05852 Ig5_Contactin-1 Fifth 99.7 2E-16 4.3E-21 90.4 9.1 72 133-204 1-73 (73)
20 cd05735 Ig8_DSCAM Eight immuno 99.7 3.7E-16 8.1E-21 92.8 9.4 78 133-210 1-87 (88)
21 cd04975 Ig4_SCFR_like Fourth i 99.7 5.8E-16 1.3E-20 93.9 10.1 80 126-205 11-100 (101)
22 cd05730 Ig3_NCAM-1_like Third 99.7 1.5E-15 3.3E-20 91.9 11.5 80 127-206 12-94 (95)
23 cd05867 Ig4_L1-CAM_like Fourth 99.7 1E-15 2.2E-20 88.6 10.1 72 133-204 1-75 (76)
24 cd05737 Ig_Myomesin_like_C C-t 99.7 8.1E-16 1.8E-20 92.4 10.0 81 124-204 7-92 (92)
25 cd05725 Ig3_Robo Third immunog 99.7 6.3E-16 1.4E-20 87.8 9.0 69 136-204 1-69 (69)
26 cd05868 Ig4_NrCAM Fourth immun 99.7 9.4E-16 2E-20 88.6 9.8 72 133-204 1-75 (76)
27 cd05747 Ig5_Titin_like M5, fif 99.7 1.3E-15 2.9E-20 91.5 10.7 85 118-202 3-91 (92)
28 cd05892 Ig_Myotilin_C C-termin 99.7 6.4E-16 1.4E-20 88.6 8.6 69 136-204 1-75 (75)
29 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 1.3E-15 2.9E-20 90.0 10.1 77 128-204 5-86 (86)
30 cd05859 Ig4_PDGFR-alpha Fourth 99.7 1.1E-15 2.3E-20 92.9 9.8 79 127-205 12-100 (101)
31 cd04976 Ig2_VEGFR Second immun 99.7 8.7E-16 1.9E-20 87.5 8.8 70 136-205 1-70 (71)
32 cd05771 IgC_Tapasin_R Tapasin- 99.7 3.3E-15 7.1E-20 96.8 12.5 114 81-195 2-133 (139)
33 cd05863 Ig2_VEGFR-3 Second imm 99.7 7.6E-16 1.6E-20 85.9 8.2 66 136-205 1-66 (67)
34 cd05724 Ig2_Robo Second immuno 99.7 2E-15 4.3E-20 89.7 10.6 84 30-114 2-85 (86)
35 cd05723 Ig4_Neogenin Fourth im 99.7 1.7E-15 3.7E-20 86.3 9.7 70 135-204 1-71 (71)
36 cd05869 Ig5_NCAM-1 Fifth immun 99.7 2.3E-15 4.9E-20 91.4 10.7 87 118-204 2-97 (97)
37 cd04973 Ig1_FGFR First immunog 99.7 2.9E-15 6.3E-20 87.2 10.4 78 126-204 2-79 (79)
38 cd05853 Ig6_Contactin-4 Sixth 99.7 1.7E-15 3.8E-20 88.4 9.3 75 134-208 1-85 (85)
39 cd04969 Ig5_Contactin_like Fif 99.7 1.7E-15 3.7E-20 87.0 9.2 72 133-204 1-73 (73)
40 cd04972 Ig_TrkABC_d4 Fourth do 99.7 2.5E-15 5.3E-20 89.9 10.1 81 124-204 6-90 (90)
41 cd05865 Ig1_NCAM-1 First immun 99.7 5.3E-15 1.2E-19 89.0 11.5 82 123-204 5-95 (96)
42 cd05893 Ig_Palladin_C C-termin 99.7 1.2E-15 2.6E-20 87.6 8.2 69 136-204 1-75 (75)
43 cd05854 Ig6_Contactin-2 Sixth 99.7 1.9E-15 4.1E-20 89.1 9.2 75 134-208 1-85 (85)
44 cd04978 Ig4_L1-NrCAM_like Four 99.6 3E-15 6.5E-20 86.8 9.7 72 133-204 1-75 (76)
45 cd05722 Ig1_Neogenin First imm 99.6 4E-15 8.7E-20 90.0 10.5 87 27-114 2-94 (95)
46 cd05745 Ig3_Peroxidasin Third 99.6 1.6E-15 3.5E-20 87.3 8.3 73 38-114 1-73 (74)
47 cd05876 Ig3_L1-CAM Third immun 99.6 2.4E-15 5.2E-20 85.7 8.9 69 136-204 1-70 (71)
48 cd05726 Ig4_Robo Fhird immunog 99.6 4.2E-15 9.1E-20 88.9 10.2 76 133-208 1-85 (90)
49 cd05740 Ig_CEACAM_D4 Fourth im 99.6 7.7E-15 1.7E-19 87.6 11.2 79 125-204 10-90 (91)
50 cd07693 Ig1_Robo First immunog 99.6 6.4E-15 1.4E-19 90.1 11.2 91 24-115 1-99 (100)
51 PF07679 I-set: Immunoglobulin 99.6 2.2E-15 4.9E-20 90.3 8.8 86 119-204 1-90 (90)
52 cd05747 Ig5_Titin_like M5, fif 99.6 5.3E-15 1.1E-19 88.9 10.3 81 23-106 2-85 (92)
53 cd05852 Ig5_Contactin-1 Fifth 99.6 3.2E-15 7E-20 85.4 8.7 72 39-114 1-72 (73)
54 cd05737 Ig_Myomesin_like_C C-t 99.6 4E-15 8.8E-20 89.3 9.6 75 31-106 8-84 (92)
55 cd04975 Ig4_SCFR_like Fourth i 99.6 3.3E-15 7.2E-20 90.6 9.0 81 33-116 12-100 (101)
56 cd05864 Ig2_VEGFR-2 Second imm 99.6 2.6E-15 5.7E-20 84.8 8.0 69 136-205 1-69 (70)
57 cd07693 Ig1_Robo First immunog 99.6 1.2E-14 2.5E-19 89.0 11.4 87 118-204 1-99 (100)
58 cd05773 Ig8_hNephrin_like Eigh 99.6 6.9E-15 1.5E-19 90.9 10.4 78 132-209 22-109 (109)
59 cd04968 Ig3_Contactin_like Thi 99.6 5.5E-15 1.2E-19 88.1 9.6 87 24-115 1-87 (88)
60 cd05857 Ig2_FGFR Second immuno 99.6 6.8E-15 1.5E-19 87.2 10.0 77 128-204 4-85 (85)
61 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1.1E-14 2.4E-19 88.5 10.8 85 119-204 3-98 (98)
62 cd04970 Ig6_Contactin_like Six 99.6 4.8E-15 1E-19 87.7 9.0 75 134-208 1-85 (85)
63 cd05746 Ig4_Peroxidasin Fourth 99.6 3.3E-15 7.1E-20 84.7 7.8 67 136-202 1-68 (69)
64 cd05867 Ig4_L1-CAM_like Fourth 99.6 6.1E-15 1.3E-19 85.3 9.0 75 39-115 1-75 (76)
65 PF07679 I-set: Immunoglobulin 99.6 6.7E-15 1.5E-19 88.2 9.6 88 25-114 1-89 (90)
66 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 8.9E-15 1.9E-19 82.6 9.3 68 133-202 1-68 (69)
67 cd05730 Ig3_NCAM-1_like Third 99.6 1.3E-14 2.8E-19 87.8 10.7 82 32-116 11-93 (95)
68 cd05866 Ig1_NCAM-2 First immun 99.6 7.4E-15 1.6E-19 87.5 9.4 85 27-115 3-91 (92)
69 cd05740 Ig_CEACAM_D4 Fourth im 99.6 1.1E-14 2.4E-19 86.9 9.9 81 30-115 9-90 (91)
70 cd05868 Ig4_NrCAM Fourth immun 99.6 6.9E-15 1.5E-19 84.9 8.7 75 39-115 1-75 (76)
71 cd05724 Ig2_Robo Second immuno 99.6 1.9E-14 4.2E-19 85.4 10.9 79 125-203 3-85 (86)
72 cd05850 Ig1_Contactin-2 First 99.6 2.8E-14 6E-19 85.9 11.4 87 25-113 2-92 (94)
73 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 7.2E-15 1.6E-19 84.5 8.4 70 136-205 1-74 (74)
74 cd05850 Ig1_Contactin-2 First 99.6 4E-14 8.7E-19 85.2 12.0 84 119-202 2-92 (94)
75 cd05744 Ig_Myotilin_C_like Imm 99.6 1.1E-14 2.3E-19 83.9 9.1 69 136-204 1-75 (75)
76 cd05848 Ig1_Contactin-5 First 99.6 2E-14 4.3E-19 86.5 10.5 86 25-112 2-91 (94)
77 cd05728 Ig4_Contactin-2-like F 99.6 8.5E-15 1.9E-19 86.5 8.8 82 27-113 2-83 (85)
78 cd05856 Ig2_FGFRL1-like Second 99.6 1.1E-14 2.5E-19 85.7 9.0 76 129-204 5-82 (82)
79 cd05849 Ig1_Contactin-1 First 99.6 3.4E-14 7.4E-19 85.1 11.1 84 119-202 2-91 (93)
80 cd05748 Ig_Titin_like Immunogl 99.6 1.8E-14 3.8E-19 83.0 9.5 70 135-204 1-74 (74)
81 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.7E-14 3.7E-19 87.5 9.7 85 119-204 3-96 (96)
82 cd05891 Ig_M-protein_C C-termi 99.6 2.9E-14 6.3E-19 85.4 10.5 81 124-204 7-92 (92)
83 cd05738 Ig2_RPTP_IIa_LAR_like 99.6 1E-14 2.2E-19 83.9 8.1 73 42-115 1-73 (74)
84 cd05848 Ig1_Contactin-5 First 99.6 4.2E-14 9E-19 85.1 11.1 83 119-201 2-91 (94)
85 cd05731 Ig3_L1-CAM_like Third 99.6 9.5E-15 2.1E-19 83.5 8.0 69 136-204 1-70 (71)
86 cd05866 Ig1_NCAM-2 First immun 99.6 4E-14 8.7E-19 84.4 10.7 81 123-204 5-91 (92)
87 cd05865 Ig1_NCAM-1 First immun 99.6 2.5E-14 5.4E-19 86.1 9.7 87 27-115 3-95 (96)
88 cd05849 Ig1_Contactin-1 First 99.6 5.3E-14 1.1E-18 84.3 10.9 86 25-113 2-91 (93)
89 cd05760 Ig2_PTK7 Second immuno 99.6 2.2E-14 4.8E-19 83.1 8.9 70 136-205 1-75 (77)
90 cd07702 Ig2_VEGFR-1 Second imm 99.6 1.7E-14 3.8E-19 81.6 8.2 69 136-204 1-70 (72)
91 cd05722 Ig1_Neogenin First imm 99.6 5.4E-14 1.2E-18 85.0 10.9 82 123-204 4-95 (95)
92 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.5E-14 3.2E-19 83.3 8.0 67 137-203 2-77 (79)
93 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 5E-14 1.1E-18 83.2 10.2 79 33-114 4-85 (86)
94 cd04969 Ig5_Contactin_like Fif 99.6 2.3E-14 4.9E-19 82.3 8.4 72 39-114 1-72 (73)
95 cd05756 Ig1_IL1R_like First im 99.6 3.2E-14 6.8E-19 85.4 9.2 78 127-204 8-94 (94)
96 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 2.9E-14 6.4E-19 83.0 8.3 68 137-204 2-80 (81)
97 cd05853 Ig6_Contactin-4 Sixth 99.6 3.7E-14 7.9E-19 82.8 8.6 79 40-119 1-85 (85)
98 cd05891 Ig_M-protein_C C-termi 99.6 4.4E-14 9.6E-19 84.7 9.3 76 30-106 7-84 (92)
99 cd04978 Ig4_L1-NrCAM_like Four 99.6 4.5E-14 9.8E-19 81.8 9.0 75 39-115 1-75 (76)
100 cd05764 Ig_2 Subgroup of the i 99.6 5.9E-14 1.3E-18 80.8 9.4 72 133-204 1-74 (74)
101 cd05870 Ig5_NCAM-2 Fifth immun 99.6 1E-13 2.2E-18 84.3 10.8 84 29-114 6-97 (98)
102 cd05749 Ig2_Tyro3_like Second 99.6 4.9E-14 1.1E-18 81.9 9.0 76 123-202 3-80 (81)
103 cd05892 Ig_Myotilin_C C-termin 99.6 3.2E-14 6.9E-19 81.6 7.9 70 42-114 1-74 (75)
104 cd05753 Ig2_FcgammaR_like Seco 99.6 3.7E-14 8E-19 83.2 8.4 80 28-114 3-82 (83)
105 cd05869 Ig5_NCAM-1 Fifth immun 99.6 9.6E-14 2.1E-18 84.2 10.3 88 25-114 3-96 (97)
106 cd05752 Ig1_FcgammaR_like Frst 99.6 8E-14 1.7E-18 80.5 9.1 67 25-102 1-68 (78)
107 cd04972 Ig_TrkABC_d4 Fourth do 99.6 5.9E-14 1.3E-18 83.9 8.9 83 30-114 6-89 (90)
108 cd05763 Ig_1 Subgroup of the i 99.5 9E-14 2E-18 80.2 9.3 69 136-204 1-74 (75)
109 cd04974 Ig3_FGFR Third immunog 99.5 4.7E-14 1E-18 84.3 8.3 73 133-205 1-90 (90)
110 cd05758 Ig5_KIRREL3-like Fifth 99.5 1.8E-13 3.9E-18 83.1 11.0 84 118-202 2-97 (98)
111 cd04973 Ig1_FGFR First immunog 99.5 9.8E-14 2.1E-18 80.8 9.3 71 31-106 1-71 (79)
112 cd05735 Ig8_DSCAM Eight immuno 99.5 1.2E-13 2.6E-18 82.0 9.7 78 39-119 1-85 (88)
113 cd05743 Ig_Perlecan_D2_like Im 99.5 5.5E-14 1.2E-18 81.7 8.0 71 133-203 1-75 (78)
114 cd05854 Ig6_Contactin-2 Sixth 99.5 1E-13 2.2E-18 81.8 9.0 78 40-119 1-85 (85)
115 cd05859 Ig4_PDGFR-alpha Fourth 99.5 9.8E-14 2.1E-18 84.3 9.0 82 33-116 12-100 (101)
116 cd04977 Ig1_NCAM-1_like First 99.5 2.4E-13 5.3E-18 81.5 10.6 81 122-203 4-91 (92)
117 cd05726 Ig4_Robo Fhird immunog 99.5 1.3E-13 2.9E-18 82.4 9.4 77 39-117 1-83 (90)
118 cd05765 Ig_3 Subgroup of the i 99.5 1.5E-13 3.2E-18 80.7 9.4 72 133-204 1-81 (81)
119 cd05893 Ig_Palladin_C C-termin 99.5 5.4E-14 1.2E-18 80.7 7.2 70 42-114 1-74 (75)
120 cd04977 Ig1_NCAM-1_like First 99.5 1.8E-13 3.8E-18 82.1 9.7 85 27-114 3-91 (92)
121 cd05723 Ig4_Neogenin Fourth im 99.5 7.4E-14 1.6E-18 79.6 7.6 70 41-114 1-70 (71)
122 cd05760 Ig2_PTK7 Second immuno 99.5 1.4E-13 3E-18 79.7 8.8 72 42-115 1-74 (77)
123 cd04970 Ig6_Contactin_like Six 99.5 1.1E-13 2.4E-18 81.8 8.4 78 40-119 1-85 (85)
124 cd05732 Ig5_NCAM-1_like Fifth 99.5 2E-13 4.4E-18 82.7 9.7 87 25-114 3-95 (96)
125 cd05857 Ig2_FGFR Second immuno 99.5 2.3E-13 5E-18 80.6 9.6 79 34-114 4-84 (85)
126 cd05756 Ig1_IL1R_like First im 99.5 1.5E-13 3.3E-18 82.4 8.8 80 32-114 7-93 (94)
127 cd05758 Ig5_KIRREL3-like Fifth 99.5 4.1E-13 8.8E-18 81.6 10.5 79 27-106 4-91 (98)
128 cd05858 Ig3_FGFR-2 Third immun 99.5 1.3E-13 2.8E-18 82.4 8.1 72 133-204 1-89 (90)
129 cd05734 Ig7_DSCAM Seventh immu 99.5 1.6E-13 3.5E-18 80.0 8.3 69 136-204 1-79 (79)
130 cd05863 Ig2_VEGFR-3 Second imm 99.5 6.8E-14 1.5E-18 78.1 6.3 64 42-114 1-64 (67)
131 cd05749 Ig2_Tyro3_like Second 99.5 1.3E-13 2.9E-18 80.1 7.7 78 27-112 1-79 (81)
132 cd05746 Ig4_Peroxidasin Fourth 99.5 1.5E-13 3.3E-18 77.9 7.6 62 42-106 1-62 (69)
133 cd05736 Ig2_Follistatin_like S 99.5 4.4E-13 9.5E-18 77.6 9.4 71 136-206 1-75 (76)
134 cd05744 Ig_Myotilin_C_like Imm 99.5 3.3E-13 7.1E-18 77.7 8.4 70 42-114 1-74 (75)
135 cd05725 Ig3_Robo Third immunog 99.5 3.1E-13 6.7E-18 76.6 8.0 67 42-113 1-67 (69)
136 cd05752 Ig1_FcgammaR_like Frst 99.5 4.5E-13 9.8E-18 77.4 8.6 66 120-192 2-68 (78)
137 cd05750 Ig_Pro_neuregulin Immu 99.5 2.5E-13 5.4E-18 78.4 7.4 66 136-201 1-74 (75)
138 cd05876 Ig3_L1-CAM Third immun 99.5 3E-13 6.5E-18 77.0 7.4 70 42-115 1-70 (71)
139 cd05764 Ig_2 Subgroup of the i 99.5 8.4E-13 1.8E-17 76.0 9.3 71 39-113 1-72 (74)
140 cd05742 Ig1_VEGFR_like First i 99.5 5.8E-13 1.3E-17 78.6 8.7 72 133-204 1-83 (84)
141 cd04976 Ig2_VEGFR Second immun 99.5 3E-13 6.6E-18 76.9 7.1 61 42-106 1-61 (71)
142 cd05727 Ig2_Contactin-2-like S 99.5 4.9E-13 1.1E-17 79.5 8.2 74 32-105 11-85 (96)
143 cd05734 Ig7_DSCAM Seventh immu 99.5 4.7E-13 1E-17 78.0 8.0 72 42-114 1-78 (79)
144 cd05754 Ig3_Perlecan_like Thir 99.5 1.8E-12 3.9E-17 76.7 10.1 78 123-202 6-84 (85)
145 cd04979 Ig_Semaphorin_C Immuno 99.5 1.3E-12 2.8E-17 78.0 9.6 83 31-116 3-87 (89)
146 cd05873 Ig_Sema4D_like Immunog 99.5 7.2E-13 1.6E-17 77.7 8.2 70 30-103 2-71 (87)
147 cd05757 Ig2_IL1R_like Second i 99.5 1E-12 2.2E-17 78.3 9.0 77 128-204 5-86 (92)
148 cd05856 Ig2_FGFRL1-like Second 99.5 4.2E-13 9E-18 78.9 7.1 77 34-113 4-80 (82)
149 cd05748 Ig_Titin_like Immunogl 99.5 1.1E-12 2.4E-17 75.5 8.6 70 41-114 1-73 (74)
150 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.1E-12 2.4E-17 75.9 8.6 70 42-112 1-75 (77)
151 cd05773 Ig8_hNephrin_like Eigh 99.5 3.8E-12 8.2E-17 78.7 11.5 79 38-119 22-108 (109)
152 cd04979 Ig_Semaphorin_C Immuno 99.4 2.6E-12 5.7E-17 76.6 10.4 81 125-206 3-88 (89)
153 cd04967 Ig1_Contactin First Ig 99.4 3.9E-12 8.5E-17 76.2 10.8 79 119-197 2-86 (91)
154 cd05873 Ig_Sema4D_like Immunog 99.4 3.6E-12 7.7E-17 74.8 10.2 68 125-193 3-71 (87)
155 cd05864 Ig2_VEGFR-2 Second imm 99.4 5.9E-13 1.3E-17 75.2 6.6 60 42-106 1-60 (70)
156 cd05861 Ig1_PDGFR-alphabeta Fr 99.4 3E-12 6.5E-17 75.3 9.9 73 133-205 1-83 (84)
157 cd05733 Ig6_L1-CAM_like Sixth 99.4 1.5E-12 3.3E-17 75.3 8.3 62 136-197 1-70 (77)
158 cd04974 Ig3_FGFR Third immunog 99.4 1.9E-12 4.2E-17 77.3 8.9 75 39-115 1-89 (90)
159 cd05858 Ig3_FGFR-2 Third immun 99.4 1.5E-12 3.3E-17 77.8 8.5 75 39-115 1-89 (90)
160 cd05875 Ig6_hNeurofascin_like 99.4 2.7E-12 5.9E-17 74.1 9.1 63 136-198 1-71 (77)
161 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.4E-12 5.1E-17 74.4 8.8 69 42-111 1-74 (77)
162 cd05882 Ig1_Necl-1 First (N-te 99.4 3.2E-12 6.9E-17 76.7 9.6 76 126-202 5-93 (95)
163 cd05875 Ig6_hNeurofascin_like 99.4 2.3E-12 5.1E-17 74.4 8.6 69 42-111 1-74 (77)
164 cd05874 Ig6_NrCAM Sixth immuno 99.4 2.7E-12 5.9E-17 74.1 8.9 63 136-198 1-71 (77)
165 cd04967 Ig1_Contactin First Ig 99.4 2.7E-12 6E-17 76.9 9.0 82 25-108 2-87 (91)
166 cd05765 Ig_3 Subgroup of the i 99.4 2.5E-12 5.4E-17 75.4 8.7 74 39-114 1-80 (81)
167 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.1E-12 2.3E-17 74.3 6.7 60 42-104 1-60 (72)
168 cd05731 Ig3_L1-CAM_like Third 99.4 1.2E-12 2.6E-17 74.7 7.0 70 42-115 1-70 (71)
169 cd05763 Ig_1 Subgroup of the i 99.4 2.2E-12 4.7E-17 74.4 8.1 72 42-115 1-74 (75)
170 cd05736 Ig2_Follistatin_like S 99.4 3.9E-12 8.4E-17 73.6 9.0 73 42-116 1-74 (76)
171 cd05743 Ig_Perlecan_D2_like Im 99.4 1.9E-12 4.1E-17 75.2 7.6 65 39-106 1-68 (78)
172 cd05895 Ig_Pro_neuregulin-1 Im 99.4 2.1E-12 4.6E-17 74.6 7.2 66 136-201 1-75 (76)
173 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 4.5E-12 9.8E-17 71.5 8.2 62 39-106 1-62 (69)
174 cd05753 Ig2_FcgammaR_like Seco 99.4 2.7E-12 5.9E-17 75.2 7.6 74 126-203 7-82 (83)
175 cd05729 Ig2_FGFR_like Second i 99.4 1.1E-11 2.4E-16 73.3 10.1 76 129-204 5-85 (85)
176 cd05855 Ig_TrkB_d5 Fifth domai 99.4 4.1E-12 8.8E-17 73.2 7.7 62 44-106 3-70 (79)
177 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 5.5E-12 1.2E-16 73.5 8.0 62 44-106 3-72 (81)
178 KOG3515|consensus 99.4 4.6E-12 1E-16 99.6 9.8 169 34-206 17-202 (741)
179 cd07701 Ig1_Necl-3 First (N-te 99.4 1.6E-11 3.4E-16 73.9 9.9 79 125-204 4-95 (95)
180 cd05898 Ig5_KIRREL3 Fifth immu 99.4 2.5E-11 5.3E-16 72.8 10.6 80 123-202 6-97 (98)
181 cd05845 Ig2_L1-CAM_like Second 99.4 5.9E-12 1.3E-16 74.8 7.8 73 31-104 10-83 (95)
182 cd05757 Ig2_IL1R_like Second i 99.4 1E-11 2.3E-16 74.0 8.6 69 34-105 5-77 (92)
183 cd05754 Ig3_Perlecan_like Thir 99.3 1E-11 2.2E-16 73.4 8.3 72 30-106 7-78 (85)
184 smart00408 IGc2 Immunoglobulin 99.3 1.9E-11 4.1E-16 67.8 8.6 63 132-194 1-63 (63)
185 PHA03376 BARF1; Provisional 99.3 6.8E-11 1.5E-15 77.2 11.7 125 33-158 20-164 (221)
186 cd05882 Ig1_Necl-1 First (N-te 99.3 1.7E-11 3.6E-16 73.6 8.4 71 31-102 4-84 (95)
187 cd07701 Ig1_Necl-3 First (N-te 99.3 3.2E-11 7E-16 72.5 8.7 72 31-103 4-85 (95)
188 cd05727 Ig2_Contactin-2-like S 99.3 2.5E-11 5.4E-16 72.3 7.9 71 126-196 11-86 (96)
189 cd05895 Ig_Pro_neuregulin-1 Im 99.3 2.1E-11 4.5E-16 70.5 7.4 65 42-106 1-70 (76)
190 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 4.7E-11 1E-15 70.2 8.5 76 39-115 1-82 (84)
191 cd05750 Ig_Pro_neuregulin Immu 99.3 2.6E-11 5.6E-16 69.9 7.1 64 42-106 1-69 (75)
192 smart00408 IGc2 Immunoglobulin 99.3 6.1E-11 1.3E-15 65.7 8.4 62 38-103 1-62 (63)
193 PF13895 Ig_2: Immunoglobulin 99.3 2.5E-11 5.4E-16 70.9 7.1 72 33-114 8-79 (80)
194 cd05871 Ig_Semaphorin_classIII 99.3 1.7E-10 3.7E-15 68.8 10.5 77 129-206 7-90 (91)
195 cd05871 Ig_Semaphorin_classIII 99.3 7.8E-11 1.7E-15 70.2 9.0 81 33-116 5-89 (91)
196 cd05774 Ig_CEACAM_D1 First imm 99.3 6.5E-11 1.4E-15 72.1 8.8 77 28-105 2-95 (105)
197 cd05742 Ig1_VEGFR_like First i 99.3 1.8E-11 3.9E-16 72.2 6.1 74 39-114 1-82 (84)
198 cd05729 Ig2_FGFR_like Second i 99.3 1.3E-10 2.8E-15 68.7 9.7 79 34-114 4-84 (85)
199 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 7.6E-11 1.7E-15 70.5 8.0 73 32-105 8-95 (104)
200 cd05898 Ig5_KIRREL3 Fifth immu 99.2 3E-10 6.5E-15 68.2 10.5 80 26-106 3-91 (98)
201 PF13895 Ig_2: Immunoglobulin 99.2 7.6E-11 1.6E-15 68.8 7.7 71 128-204 9-80 (80)
202 cd05862 Ig1_VEGFR First immuno 99.2 1.1E-10 2.3E-15 69.0 8.2 73 133-205 1-85 (86)
203 cd05897 Ig2_IL1R2_like Second 99.2 7.6E-11 1.7E-15 70.2 7.5 71 34-105 5-80 (95)
204 cd05845 Ig2_L1-CAM_like Second 99.2 9.1E-11 2E-15 69.7 7.8 70 126-195 11-84 (95)
205 cd07690 Ig1_CD4 First immunogl 99.2 9.8E-11 2.1E-15 69.9 7.2 70 34-104 2-89 (94)
206 smart00409 IG Immunoglobulin. 99.2 1.1E-09 2.3E-14 64.5 11.5 78 127-204 3-85 (86)
207 smart00410 IG_like Immunoglobu 99.2 1.1E-09 2.3E-14 64.5 11.5 78 127-204 3-85 (86)
208 cd05717 Ig1_Necl-1-3_like Firs 99.2 2.2E-10 4.9E-15 69.1 8.6 71 32-103 5-85 (95)
209 cd05897 Ig2_IL1R2_like Second 99.2 2.3E-10 4.9E-15 68.2 8.3 77 128-204 5-93 (95)
210 cd05717 Ig1_Necl-1-3_like Firs 99.2 5.7E-10 1.2E-14 67.4 10.3 77 126-203 5-94 (95)
211 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 4.1E-10 8.8E-15 67.4 9.2 78 127-204 9-104 (104)
212 cd05741 Ig_CEACAM_D1_like Firs 99.2 2.5E-10 5.5E-15 68.5 8.0 74 39-113 1-90 (92)
213 cd05872 Ig_Sema4B_like Immunog 99.2 6.3E-10 1.4E-14 64.8 8.7 66 32-102 4-69 (85)
214 cd05775 Ig_SLAM-CD84_like_N N- 99.2 3.8E-10 8.2E-15 68.2 8.1 79 37-115 2-96 (97)
215 PF00047 ig: Immunoglobulin do 99.1 1.5E-10 3.3E-15 64.5 5.6 57 133-189 1-64 (64)
216 smart00410 IG_like Immunoglobu 99.1 1.6E-09 3.5E-14 63.7 10.3 72 32-106 2-77 (86)
217 smart00409 IG Immunoglobulin. 99.1 1.6E-09 3.5E-14 63.7 10.3 72 32-106 2-77 (86)
218 PF00047 ig: Immunoglobulin do 99.1 8.5E-11 1.8E-15 65.5 3.8 60 39-99 1-64 (64)
219 cd05879 Ig_P0 Immunoglobulin ( 99.1 1.7E-09 3.7E-14 67.2 9.9 76 30-105 4-105 (116)
220 PHA02826 IL-1 receptor-like pr 99.1 1.7E-09 3.7E-14 75.4 10.8 68 33-102 138-210 (227)
221 cd05885 Ig2_Necl-4 Second immu 99.1 1.1E-09 2.4E-14 62.9 8.0 60 136-195 2-68 (80)
222 cd05860 Ig4_SCFR Fourth immuno 99.1 3.8E-09 8.2E-14 63.1 10.3 80 126-205 11-100 (101)
223 cd05881 Ig1_Necl-2 First (N-te 99.1 1.9E-09 4.2E-14 64.3 8.9 71 32-103 5-85 (95)
224 cd05774 Ig_CEACAM_D1 First imm 99.1 3.1E-09 6.7E-14 64.8 9.9 79 125-203 5-104 (105)
225 cd05751 Ig1_LILRB1_like First 99.1 7.9E-10 1.7E-14 66.0 7.3 73 25-102 3-75 (91)
226 cd07690 Ig1_CD4 First immunogl 99.1 8.3E-10 1.8E-14 65.9 7.2 67 129-195 3-90 (94)
227 cd04983 IgV_TCR_alpha_like Imm 99.1 1.6E-09 3.5E-14 67.2 8.7 74 29-103 3-93 (109)
228 cd05885 Ig2_Necl-4 Second immu 99.1 2.2E-09 4.8E-14 61.7 8.5 64 42-105 2-68 (80)
229 cd05872 Ig_Sema4B_like Immunog 99.1 3.3E-09 7.1E-14 61.8 9.1 64 126-190 4-67 (85)
230 cd05900 Ig_Aggrecan Immunoglob 99.0 6.7E-09 1.5E-13 64.1 9.6 78 38-116 1-109 (112)
231 cd05846 Ig1_MRC-OX-2_like Firs 99.0 4.7E-09 1E-13 63.5 8.4 77 39-115 1-96 (97)
232 cd05877 Ig_LP_like Immunoglobu 99.0 8E-09 1.7E-13 63.7 9.1 78 38-116 1-103 (106)
233 cd05751 Ig1_LILRB1_like First 99.0 5.9E-09 1.3E-13 62.3 8.2 72 119-192 3-75 (91)
234 cd05759 Ig2_KIRREL3-like Secon 99.0 5.1E-09 1.1E-13 61.3 7.7 68 136-203 2-81 (82)
235 cd05880 Ig_EVA1 Immunoglobulin 99.0 8.3E-09 1.8E-13 64.4 9.0 76 30-105 4-104 (115)
236 cd04980 IgV_L_kappa Immunoglob 99.0 1.1E-08 2.4E-13 63.0 9.0 75 27-102 3-93 (106)
237 cd05718 Ig1_PVR_like First imm 99.0 7.8E-09 1.7E-13 62.8 8.2 76 40-115 1-97 (98)
238 cd05887 Ig1_Nectin-3_like Firs 99.0 1.1E-08 2.4E-13 61.2 8.5 76 40-115 1-95 (96)
239 cd05899 IgV_TCR_beta Immunoglo 98.9 7.1E-09 1.5E-13 64.3 7.7 73 28-102 2-94 (110)
240 cd05860 Ig4_SCFR Fourth immuno 98.9 1.8E-08 3.9E-13 60.2 8.8 82 32-115 11-99 (101)
241 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.8E-08 3.8E-13 60.4 9.0 71 133-203 1-91 (92)
242 cd05878 Ig_Aggrecan_like Immun 98.9 2.5E-08 5.5E-13 61.7 9.6 79 38-117 1-108 (110)
243 cd05714 Ig_CSPGs_LP Immunoglob 98.9 1.9E-08 4.2E-13 61.9 9.1 79 38-117 1-104 (106)
244 PF13927 Ig_3: Immunoglobulin 98.9 3.2E-09 7E-14 60.9 5.3 74 25-101 2-75 (75)
245 PF13927 Ig_3: Immunoglobulin 98.9 1.8E-09 3.9E-14 62.0 4.1 72 119-191 2-75 (75)
246 cd05862 Ig1_VEGFR First immuno 98.9 9.7E-09 2.1E-13 60.6 7.1 75 39-115 1-84 (86)
247 cd05759 Ig2_KIRREL3-like Secon 98.9 1.8E-08 3.8E-13 59.0 8.1 64 41-104 1-70 (82)
248 cd05900 Ig_Aggrecan Immunoglob 98.9 4.4E-08 9.6E-13 60.5 10.1 75 132-206 1-110 (112)
249 cd05715 Ig_P0-like Immunoglobu 98.9 2.7E-08 5.8E-13 62.3 9.3 76 30-105 4-105 (116)
250 cd05714 Ig_CSPGs_LP Immunoglob 98.9 4.7E-08 1E-12 60.2 9.9 75 132-206 1-104 (106)
251 cd05713 Ig_MOG_like Immunoglob 98.9 2.1E-08 4.5E-13 61.1 8.1 76 39-115 1-99 (100)
252 PHA02987 Ig domain OX-2-like p 98.9 4.9E-08 1.1E-12 64.3 10.2 87 33-119 24-125 (189)
253 cd05755 Ig2_ICAM-1_like Second 98.9 1.7E-08 3.6E-13 60.6 7.2 80 25-104 2-86 (100)
254 cd05883 Ig2_Necl-2 Second immu 98.9 5.4E-08 1.2E-12 56.1 8.9 76 42-117 2-81 (82)
255 cd04983 IgV_TCR_alpha_like Imm 98.9 3.6E-08 7.7E-13 61.1 8.9 70 124-193 4-93 (109)
256 cd05889 Ig1_DNAM-1_like First 98.9 6.4E-08 1.4E-12 58.0 9.4 65 40-104 1-84 (96)
257 cd00099 IgV Immunoglobulin var 98.9 1.3E-08 2.8E-13 62.6 6.6 69 35-104 2-91 (105)
258 cd05877 Ig_LP_like Immunoglobu 98.8 7.1E-08 1.5E-12 59.4 9.7 75 132-206 1-104 (106)
259 PF07686 V-set: Immunoglobulin 98.8 1.4E-08 3E-13 63.4 6.6 74 29-102 6-101 (114)
260 cd07706 IgV_TCR_delta Immunogl 98.8 4.3E-08 9.3E-13 61.4 8.7 76 27-102 2-94 (116)
261 cd05888 Ig1_Nectin-4_like Frst 98.8 5.7E-08 1.2E-12 59.1 8.6 76 40-115 1-99 (100)
262 cd05713 Ig_MOG_like Immunoglob 98.8 8.6E-08 1.9E-12 58.4 9.2 72 133-204 1-99 (100)
263 cd05899 IgV_TCR_beta Immunoglo 98.8 8.6E-08 1.9E-12 59.5 9.2 70 123-193 3-95 (110)
264 cd05711 Ig_FcalphaRI Immunoglo 98.8 4.2E-08 9.1E-13 58.9 7.5 67 33-101 9-76 (94)
265 cd05902 Ig_Neurocan Immunoglob 98.8 6.4E-08 1.4E-12 59.5 8.3 77 39-116 2-107 (110)
266 cd05881 Ig1_Necl-2 First (N-te 98.8 2.1E-07 4.5E-12 55.6 10.2 67 126-192 5-84 (95)
267 cd05718 Ig1_PVR_like First imm 98.8 1.9E-07 4.1E-12 56.6 9.5 71 134-204 1-97 (98)
268 cd05886 Ig1_Nectin-1_like Firs 98.7 1.9E-07 4.1E-12 56.4 9.1 74 41-115 2-98 (99)
269 cd05879 Ig_P0 Immunoglobulin ( 98.7 2.3E-07 5E-12 57.8 9.7 71 125-195 5-105 (116)
270 cd04982 IgV_TCR_gamma Immunogl 98.7 1.1E-07 2.3E-12 59.6 8.3 72 29-101 3-98 (116)
271 cd05901 Ig_Versican Immunoglob 98.7 2.3E-07 4.9E-12 57.3 9.3 78 39-117 2-115 (117)
272 cd05878 Ig_Aggrecan_like Immun 98.7 2.9E-07 6.3E-12 56.9 9.8 75 132-206 1-108 (110)
273 cd04984 IgV_L_lambda Immunoglo 98.7 1E-07 2.2E-12 57.8 7.7 67 35-102 2-85 (98)
274 cd05716 Ig_pIgR Immunoglobulin 98.7 1.4E-07 3E-12 57.3 7.8 70 34-103 2-87 (98)
275 cd05775 Ig_SLAM-CD84_like_N N- 98.6 2.4E-07 5.3E-12 55.9 7.3 74 131-204 2-96 (97)
276 cd05902 Ig_Neurocan Immunoglob 98.6 5.1E-07 1.1E-11 55.6 8.3 37 170-206 72-108 (110)
277 cd05712 Ig_Siglec_N Immunoglob 98.6 4.1E-07 8.8E-12 57.2 8.1 73 30-102 5-102 (119)
278 cd05901 Ig_Versican Immunoglob 98.6 1.6E-06 3.4E-11 53.7 10.4 38 169-206 78-115 (117)
279 cd07694 Ig2_CD4 Second immunog 98.6 1.6E-06 3.5E-11 50.1 9.5 76 128-205 9-86 (88)
280 cd00099 IgV Immunoglobulin var 98.6 3.4E-07 7.4E-12 56.2 7.4 66 129-194 2-91 (105)
281 cd05883 Ig2_Necl-2 Second immu 98.6 1.2E-06 2.5E-11 50.7 8.6 70 136-205 2-80 (82)
282 cd05711 Ig_FcalphaRI Immunoglo 98.6 7E-07 1.5E-11 53.6 8.0 63 127-190 9-75 (94)
283 cd07694 Ig2_CD4 Second immunog 98.6 1.2E-06 2.7E-11 50.5 8.5 64 34-102 9-73 (88)
284 cd04980 IgV_L_kappa Immunoglob 98.6 8.6E-07 1.9E-11 54.6 8.6 71 122-192 4-93 (106)
285 cd05888 Ig1_Nectin-4_like Frst 98.6 1.7E-06 3.8E-11 52.5 9.6 70 135-204 2-99 (100)
286 cd05771 IgC_Tapasin_R Tapasin- 98.6 1.5E-06 3.2E-11 56.3 9.7 90 13-103 28-131 (139)
287 PF07686 V-set: Immunoglobulin 98.6 5.9E-07 1.3E-11 55.9 7.6 81 124-204 7-114 (114)
288 cd07705 Ig2_Necl-1 Second immu 98.5 1.6E-06 3.5E-11 50.7 8.8 63 42-105 2-71 (83)
289 cd07700 IgV_CD8_beta Immunoglo 98.5 6.5E-07 1.4E-11 55.2 7.3 67 35-101 2-93 (107)
290 cd00098 IgC Immunoglobulin Con 98.5 3.4E-07 7.3E-12 55.2 5.9 65 131-195 11-87 (95)
291 cd05880 Ig_EVA1 Immunoglobulin 98.5 1.3E-06 2.8E-11 54.6 8.6 71 125-195 5-104 (115)
292 cd05886 Ig1_Nectin-1_like Firs 98.5 2.8E-06 6E-11 51.3 9.4 35 170-204 63-98 (99)
293 cd05755 Ig2_ICAM-1_like Second 98.5 1.3E-06 2.8E-11 52.5 7.9 75 122-196 5-88 (100)
294 cd05761 Ig2_Necl-1-4_like Seco 98.5 1.4E-06 3E-11 50.9 7.9 60 136-195 2-70 (82)
295 cd07705 Ig2_Necl-1 Second immu 98.5 2.1E-06 4.6E-11 50.2 8.4 60 136-195 2-71 (83)
296 PHA02987 Ig domain OX-2-like p 98.5 3.9E-06 8.5E-11 55.5 10.2 80 128-207 25-124 (189)
297 cd05715 Ig_P0-like Immunoglobu 98.5 3.8E-06 8.2E-11 52.6 9.9 71 125-195 5-105 (116)
298 cd04982 IgV_TCR_gamma Immunogl 98.5 1.2E-06 2.6E-11 54.9 7.6 69 124-192 4-99 (116)
299 cd05846 Ig1_MRC-OX-2_like Firs 98.5 3.2E-06 6.9E-11 51.1 9.2 72 133-204 1-96 (97)
300 cd05761 Ig2_Necl-1-4_like Seco 98.5 2.1E-06 4.5E-11 50.2 8.1 63 42-105 2-70 (82)
301 cd05887 Ig1_Nectin-3_like Firs 98.5 8.5E-06 1.8E-10 48.8 10.4 70 135-204 2-95 (96)
302 cd04981 IgV_H Immunoglobulin ( 98.4 3E-06 6.4E-11 53.1 8.7 72 30-101 3-97 (117)
303 KOG3515|consensus 98.4 1.2E-06 2.5E-11 70.0 7.9 192 17-208 293-496 (741)
304 cd05884 Ig2_Necl-3 Second immu 98.4 2.5E-06 5.5E-11 49.8 7.1 63 42-104 2-70 (83)
305 cd04984 IgV_L_lambda Immunoglo 98.3 4.4E-06 9.6E-11 50.6 7.4 64 129-192 2-85 (98)
306 cd00098 IgC Immunoglobulin Con 98.3 1.7E-06 3.7E-11 52.1 5.3 68 37-104 11-86 (95)
307 cd05772 IgC_SIRP Signal-regula 98.3 5.5E-06 1.2E-10 51.1 7.0 74 28-103 10-92 (111)
308 cd05884 Ig2_Necl-3 Second immu 98.3 8.7E-06 1.9E-10 47.5 7.5 60 136-195 2-71 (83)
309 cd07706 IgV_TCR_delta Immunogl 98.3 7.7E-06 1.7E-10 51.2 7.6 70 123-192 4-94 (116)
310 PF08205 C2-set_2: CD80-like C 98.2 4.8E-06 1E-10 49.5 6.0 64 133-196 14-87 (89)
311 cd05716 Ig_pIgR Immunoglobulin 98.2 1.5E-05 3.2E-10 48.3 8.2 65 129-193 3-87 (98)
312 cd05720 Ig_CD8_alpha Immunoglo 98.2 6E-06 1.3E-10 50.6 6.2 65 35-100 2-89 (104)
313 cd05772 IgC_SIRP Signal-regula 98.2 1.6E-05 3.4E-10 49.1 7.9 67 129-195 17-94 (111)
314 cd00096 Ig Immunoglobulin doma 98.2 1.3E-05 2.9E-10 44.7 7.2 58 136-193 1-66 (74)
315 cd00096 Ig Immunoglobulin doma 98.2 7.8E-06 1.7E-10 45.6 6.2 61 42-103 1-66 (74)
316 cd07692 Ig_CD3_epsilon Immunog 98.1 2.2E-05 4.7E-10 42.7 6.4 52 131-192 5-56 (65)
317 PF08205 C2-set_2: CD80-like C 98.1 6.5E-06 1.4E-10 48.9 4.7 66 39-104 14-85 (89)
318 cd05889 Ig1_DNAM-1_like First 98.1 0.00011 2.3E-09 44.1 9.6 69 134-202 1-93 (96)
319 cd05847 IgC_CH2_IgE CH2 domain 98.1 2.3E-05 4.9E-10 46.9 6.6 67 132-198 13-91 (94)
320 cd07698 IgC_MHC_I_alpha3 Class 98.1 3E-05 6.5E-10 46.4 7.1 65 39-103 14-83 (93)
321 cd07698 IgC_MHC_I_alpha3 Class 98.1 3.4E-05 7.5E-10 46.2 7.3 63 133-195 14-85 (93)
322 cd07700 IgV_CD8_beta Immunoglo 98.1 3.8E-05 8.3E-10 47.3 7.5 63 129-191 2-93 (107)
323 smart00407 IGc1 Immunoglobulin 98.1 3.6E-05 7.8E-10 44.0 6.9 59 136-194 2-72 (75)
324 cd07699 IgC_L Immunoglobulin C 98.0 1.4E-05 3.1E-10 48.4 5.2 67 129-195 13-91 (100)
325 PHA02633 hypothetical protein; 98.0 3.3E-05 7.1E-10 41.2 5.7 46 168-213 16-61 (63)
326 cd05770 IgC_beta2m Class I maj 98.0 3.8E-05 8.2E-10 45.8 6.7 67 37-103 13-83 (93)
327 smart00406 IGv Immunoglobulin 98.0 2E-05 4.3E-10 45.7 5.4 58 41-99 1-81 (81)
328 KOG1480|consensus 98.0 5.9E-06 1.3E-10 65.5 3.9 168 25-195 25-208 (909)
329 cd07699 IgC_L Immunoglobulin C 98.0 1.3E-05 2.8E-10 48.6 4.6 79 25-103 2-89 (100)
330 cd07696 IgC_CH3 CH3 domain (th 98.0 3.2E-05 6.9E-10 46.5 5.9 71 125-195 6-88 (96)
331 cd05767 IgC_MHC_II_alpha Class 98.0 0.00013 2.8E-09 43.6 8.4 61 132-195 14-86 (94)
332 cd05768 IgC_CH4 CH4 domain (fo 97.9 2.4E-05 5.3E-10 47.6 5.0 66 130-195 13-93 (102)
333 cd05770 IgC_beta2m Class I maj 97.9 0.0002 4.3E-09 42.7 8.7 64 131-195 13-85 (93)
334 cd05720 Ig_CD8_alpha Immunoglo 97.9 5.3E-05 1.1E-09 46.4 6.3 63 129-191 2-90 (104)
335 cd05712 Ig_Siglec_N Immunoglob 97.9 0.00026 5.5E-09 44.5 9.4 69 124-192 5-102 (119)
336 cd04985 IgC_CH1 CH1 domain (fi 97.9 0.0001 2.3E-09 44.1 7.3 61 132-193 15-87 (95)
337 cd05766 IgC_MHC_II_beta Class 97.9 0.00024 5.1E-09 42.6 8.7 66 131-196 12-86 (94)
338 smart00407 IGc1 Immunoglobulin 97.9 9.4E-05 2E-09 42.3 6.6 63 41-103 1-71 (75)
339 cd05766 IgC_MHC_II_beta Class 97.9 0.00015 3.3E-09 43.4 7.8 67 37-103 12-83 (94)
340 cd05769 IgC_TCR_beta T cell re 97.9 7E-05 1.5E-09 46.5 6.4 71 129-199 14-98 (115)
341 KOG1480|consensus 97.9 3.8E-06 8.2E-11 66.5 0.5 105 10-116 115-219 (909)
342 cd07692 Ig_CD3_epsilon Immunog 97.8 9.4E-05 2E-09 40.3 5.4 52 36-101 4-55 (65)
343 cd04981 IgV_H Immunoglobulin ( 97.8 0.0002 4.3E-09 44.8 7.6 67 125-191 4-97 (117)
344 cd07689 Ig2_VCAM-1 Second immu 97.8 0.00012 2.6E-09 43.5 5.9 68 35-103 11-86 (99)
345 PHA03376 BARF1; Provisional 97.8 0.00051 1.1E-08 45.8 9.0 67 127-193 20-110 (221)
346 cd04986 IgC_CH2 CH2 domain (se 97.8 0.00013 2.8E-09 43.8 5.9 71 125-195 11-91 (99)
347 cd05767 IgC_MHC_II_alpha Class 97.7 0.0002 4.3E-09 42.8 6.5 64 37-103 13-84 (94)
348 cd05719 Ig2_PVR_like Second im 97.7 0.0004 8.6E-09 41.6 7.7 63 39-104 15-83 (95)
349 cd05847 IgC_CH2_IgE CH2 domain 97.7 0.00017 3.6E-09 43.2 6.0 67 37-103 12-86 (94)
350 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00038 8.2E-09 38.2 6.5 49 133-191 6-54 (69)
351 cd05719 Ig2_PVR_like Second im 97.7 0.00064 1.4E-08 40.7 8.1 66 134-199 16-88 (95)
352 cd07703 Ig2_Nectin-2_like Seco 97.6 0.00049 1.1E-08 41.2 7.0 70 134-203 16-92 (95)
353 cd07704 Ig2_Nectin-3-4_like Se 97.6 0.00056 1.2E-08 40.9 6.9 68 34-103 11-84 (97)
354 PF07654 C1-set: Immunoglobuli 97.6 0.00037 8.1E-09 40.7 6.1 61 132-195 7-79 (83)
355 smart00406 IGv Immunoglobulin 97.6 0.00027 5.9E-09 40.8 5.5 20 170-189 62-81 (81)
356 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00023 5E-09 42.8 5.1 70 34-103 9-86 (96)
357 cd05768 IgC_CH4 CH4 domain (fo 97.6 0.00044 9.5E-09 42.1 6.1 69 35-103 12-91 (102)
358 PHA02982 hypothetical protein; 97.5 0.005 1.1E-07 41.7 10.9 119 33-157 33-172 (251)
359 cd07697 IgC_TCR_gamma T cell r 97.5 0.00046 1E-08 41.4 5.6 34 34-67 11-45 (96)
360 cd07704 Ig2_Nectin-3-4_like Se 97.5 0.0015 3.2E-08 39.1 7.6 68 128-195 11-86 (97)
361 cd07703 Ig2_Nectin-2_like Seco 97.5 0.002 4.3E-08 38.6 7.9 62 40-104 16-83 (95)
362 cd07691 Ig_CD3_gamma_delta Imm 97.4 0.00084 1.8E-08 36.9 5.6 49 39-101 6-54 (69)
363 cd07697 IgC_TCR_gamma T cell r 97.4 0.00097 2.1E-08 40.0 6.5 63 129-193 12-85 (96)
364 cd05769 IgC_TCR_beta T cell re 97.4 0.00063 1.4E-08 42.2 5.5 71 34-104 13-93 (115)
365 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0018 3.9E-08 39.9 7.3 70 30-100 4-94 (115)
366 PF07654 C1-set: Immunoglobuli 97.4 0.0012 2.6E-08 38.5 6.3 63 38-103 7-77 (83)
367 PHA02633 hypothetical protein; 97.3 0.001 2.2E-08 35.6 4.5 39 78-117 16-54 (63)
368 PHA03269 envelope glycoprotein 97.3 0.0057 1.2E-07 46.7 10.1 131 81-213 290-442 (566)
369 PF08204 V-set_CD47: CD47 immu 97.2 0.00051 1.1E-08 43.2 3.2 70 35-105 23-110 (130)
370 cd04985 IgC_CH1 CH1 domain (fi 97.1 0.0031 6.7E-08 37.8 6.3 65 38-103 15-87 (95)
371 cd04986 IgC_CH2 CH2 domain (se 97.1 0.0015 3.3E-08 39.3 4.8 69 34-104 14-90 (99)
372 PHA03270 envelope glycoprotein 97.1 0.02 4.3E-07 43.3 11.4 113 81-195 183-310 (466)
373 PHA03270 envelope glycoprotein 97.1 0.071 1.5E-06 40.5 14.2 158 23-191 220-401 (466)
374 PF11465 Receptor_2B4: Natural 97.1 0.012 2.6E-07 35.5 8.2 43 73-115 63-106 (108)
375 PHA03271 envelope glycoprotein 97.1 0.064 1.4E-06 40.5 13.5 166 16-191 239-430 (490)
376 PHA03273 envelope glycoprotein 96.9 0.023 5E-07 43.4 10.6 131 81-213 199-350 (486)
377 PF08204 V-set_CD47: CD47 immu 96.9 0.0023 5E-08 40.3 4.7 78 130-208 24-123 (130)
378 cd07689 Ig2_VCAM-1 Second immu 96.8 0.012 2.6E-07 35.2 6.7 63 129-192 11-85 (99)
379 cd05721 IgV_CTLA-4 Immunoglobu 96.7 0.019 4.1E-07 35.4 7.3 64 126-189 6-93 (115)
380 KOG4597|consensus 96.7 0.0037 8E-08 47.5 4.7 81 125-205 203-292 (560)
381 PHA03271 envelope glycoprotein 96.6 0.066 1.4E-06 40.4 10.9 113 81-195 208-337 (490)
382 PHA02914 Immunoglobulin-like d 96.6 0.21 4.6E-06 37.7 16.4 71 34-104 21-105 (500)
383 PF07354 Sp38: Zona-pellucida- 96.6 0.0082 1.8E-07 42.3 5.5 48 146-193 11-60 (271)
384 PHA03042 CD47-like protein; Pr 96.5 0.019 4.1E-07 40.7 7.2 73 130-205 28-105 (286)
385 PHA03273 envelope glycoprotein 96.5 0.26 5.7E-06 37.9 14.7 131 16-156 228-376 (486)
386 PF07354 Sp38: Zona-pellucida- 96.5 0.0072 1.6E-07 42.6 4.8 50 53-103 11-60 (271)
387 PHA03042 CD47-like protein; Pr 95.2 0.22 4.9E-06 35.5 7.9 63 36-105 28-95 (286)
388 PF06328 Lep_receptor_Ig: Ig-l 95.1 0.28 6E-06 29.0 7.0 66 125-190 10-82 (89)
389 PF06328 Lep_receptor_Ig: Ig-l 95.1 0.12 2.6E-06 30.5 5.5 69 29-100 8-82 (89)
390 PHA03269 envelope glycoprotein 94.8 1.6 3.4E-05 34.2 15.7 165 17-191 321-512 (566)
391 KOG4597|consensus 93.8 0.12 2.6E-06 39.8 4.3 82 32-115 204-291 (560)
392 PHA02865 MHC-like TNF binding 93.4 0.41 9E-06 35.6 6.3 21 135-155 216-238 (338)
393 PHA02982 hypothetical protein; 93.2 0.53 1.2E-05 32.3 6.2 70 126-195 32-125 (251)
394 PF11465 Receptor_2B4: Natural 93.1 1.2 2.6E-05 27.1 9.8 38 168-205 69-107 (108)
395 PHA03052 Hypothetical protein; 92.2 0.6 1.3E-05 25.7 4.4 34 126-159 5-41 (69)
396 PF05790 C2-set: Immunoglobuli 92.0 1.4 3.1E-05 25.4 7.3 38 54-100 26-63 (80)
397 PHA03052 Hypothetical protein; 91.9 0.83 1.8E-05 25.1 4.7 37 30-66 3-41 (69)
398 KOG0613|consensus 91.9 0.38 8.2E-06 41.8 5.1 77 129-205 345-428 (1205)
399 PF03921 ICAM_N: Intercellular 91.8 1.7 3.7E-05 25.8 8.8 84 25-120 4-90 (91)
400 PHA03283 envelope glycoprotein 91.7 5.7 0.00012 31.6 12.5 76 79-155 133-234 (542)
401 PF02480 Herpes_gE: Alphaherpe 91.6 0.64 1.4E-05 36.3 5.8 77 79-155 88-190 (439)
402 cd05890 Ig2_Nectin-1_like Seco 91.4 0.73 1.6E-05 27.4 4.5 66 136-203 23-97 (98)
403 PHA02914 Immunoglobulin-like d 91.3 5.5 0.00012 30.6 13.4 155 34-195 274-469 (500)
404 PF05790 C2-set: Immunoglobuli 91.1 1.9 4.1E-05 24.9 9.1 52 147-204 26-78 (80)
405 KOG0613|consensus 89.3 1.2 2.5E-05 39.0 5.8 160 33-194 343-517 (1205)
406 PHA03282 envelope glycoprotein 89.2 9.4 0.0002 30.0 12.8 38 79-116 123-161 (540)
407 PHA03189 UL14 tegument protein 88.0 3.2 6.9E-05 30.4 6.4 20 30-49 58-77 (348)
408 KOG1026|consensus 87.7 1.9 4.2E-05 36.0 5.9 159 33-208 201-366 (774)
409 PHA02865 MHC-like TNF binding 87.6 2.1 4.5E-05 32.1 5.5 22 41-62 216-238 (338)
410 TIGR00864 PCC polycystin catio 87.1 33 0.00071 33.8 19.3 178 14-207 1857-2041(2740)
411 PHA03240 envelope glycoprotein 87.0 1.7 3.6E-05 30.0 4.3 63 33-96 32-121 (258)
412 PHA03286 envelope glycoprotein 86.0 15 0.00032 28.8 14.5 75 80-154 127-225 (492)
413 PF03921 ICAM_N: Intercellular 85.0 6.1 0.00013 23.5 7.6 81 122-209 7-90 (91)
414 cd05890 Ig2_Nectin-1_like Seco 84.0 6.4 0.00014 23.6 5.3 60 42-103 23-87 (98)
415 PF02440 Adeno_E3_CR1: Adenovi 83.4 5.6 0.00012 21.8 4.8 21 36-61 2-22 (63)
416 PF02124 Marek_A: Marek's dise 77.2 22 0.00048 24.9 15.1 129 55-191 7-159 (211)
417 PHA03281 envelope glycoprotein 77.1 38 0.00082 27.5 13.1 76 79-154 297-394 (642)
418 TIGR00864 PCC polycystin catio 73.4 1E+02 0.0023 30.8 19.7 150 35-206 1796-1950(2740)
419 PHA03240 envelope glycoprotein 64.1 18 0.00038 25.3 4.1 28 168-195 103-130 (258)
420 PHA02935 Hypothetical protein; 64.0 13 0.00029 25.5 3.6 87 56-144 68-166 (349)
421 KOG0200|consensus 59.9 69 0.0015 26.8 7.7 105 79-192 12-139 (609)
422 PF06832 BiPBP_C: Penicillin-B 56.0 39 0.00085 19.7 8.7 56 135-198 31-86 (89)
423 COG5475 Uncharacterized small 54.6 32 0.00068 18.2 4.5 22 82-105 20-41 (60)
424 KOG3611|consensus 54.5 38 0.00082 28.9 5.4 61 41-103 571-635 (737)
425 PHA03282 envelope glycoprotein 52.5 35 0.00076 27.1 4.5 37 169-205 123-161 (540)
426 PHA03283 envelope glycoprotein 50.1 58 0.0013 26.3 5.4 38 169-206 133-170 (542)
427 PF11141 DUF2914: Protein of u 49.1 45 0.00098 18.4 5.5 56 149-204 8-65 (66)
428 PHA03112 IL-18 binding protein 46.8 80 0.0017 20.6 6.3 29 35-63 34-63 (141)
429 PF01688 Herpes_gI: Alphaherpe 44.7 76 0.0017 21.3 4.6 23 81-103 125-147 (161)
430 PF10430 Ig_Tie2_1: Tie-2 Ig-l 44.5 66 0.0014 19.0 5.1 12 90-101 73-84 (96)
431 PF00801 PKD: PKD domain; Int 44.1 54 0.0012 17.8 4.3 30 33-63 5-34 (69)
432 PF11049 KSHV_K1: Glycoprotein 38.9 32 0.00069 19.0 1.9 21 43-66 2-22 (71)
433 PF01688 Herpes_gI: Alphaherpe 38.8 1.1E+02 0.0023 20.6 4.6 28 170-197 124-151 (161)
434 KOG1026|consensus 38.1 26 0.00056 29.8 2.1 71 128-206 202-274 (774)
435 PF13220 DUF4028: Protein of u 36.9 37 0.0008 17.7 1.8 17 179-195 7-23 (65)
436 PHA03189 UL14 tegument protein 35.5 1.9E+02 0.0042 21.8 8.7 25 176-200 139-164 (348)
437 PHA03290 envelope glycoprotein 32.6 1.6E+02 0.0034 22.5 5.1 24 80-103 129-152 (357)
438 TIGR02656 cyanin_plasto plasto 31.0 1E+02 0.0022 18.4 3.5 28 18-45 3-30 (99)
439 PHA03290 envelope glycoprotein 29.3 1.8E+02 0.0039 22.2 4.9 37 169-205 128-164 (357)
440 PF00127 Copper-bind: Copper b 28.6 83 0.0018 18.8 2.8 30 18-47 3-32 (99)
441 PF03174 CHB_HEX_C: Chitobiase 28.1 1.2E+02 0.0025 17.0 5.5 61 129-199 11-71 (75)
442 PHA03292 envelope glycoprotein 26.6 2.1E+02 0.0046 22.3 4.9 35 82-117 130-164 (413)
443 PHA03286 envelope glycoprotein 26.1 2.8E+02 0.0062 22.3 5.6 37 169-205 126-163 (492)
444 PHA03289 envelope glycoprotein 25.4 2.2E+02 0.0047 21.7 4.7 24 81-104 123-146 (352)
445 PRK02710 plastocyanin; Provisi 22.8 1.4E+02 0.0031 18.6 3.2 20 26-45 41-60 (119)
446 PF07705 CARDB: CARDB; InterP 22.7 1.7E+02 0.0037 17.0 4.7 34 33-66 12-49 (101)
447 PHA03281 envelope glycoprotein 22.1 3E+02 0.0065 22.8 5.2 40 169-208 297-337 (642)
448 PHA03289 envelope glycoprotein 21.9 2.8E+02 0.0061 21.1 4.7 36 170-205 122-157 (352)
449 PF02480 Herpes_gE: Alphaherpe 21.2 86 0.0019 25.0 2.3 22 81-102 270-291 (439)
450 COG4953 PbpC Membrane carboxyp 20.4 5.4E+02 0.012 22.2 6.5 55 42-108 672-726 (733)
No 1
>KOG3513|consensus
Probab=99.97 E-value=1.4e-28 Score=195.03 Aligned_cols=199 Identities=26% Similarity=0.509 Sum_probs=168.8
Q ss_pred HhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCC
Q psy573 12 EEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTD 91 (216)
Q Consensus 12 ~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 91 (216)
....+.|.|.. +|.+...+++..+..|++++|.|.+ .+.|.+.+.|+++|.++............++.|.|.+++..|
T Consensus 320 ~~~~~~v~v~a-~P~w~~~~~d~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~d 397 (1051)
T KOG3513|consen 320 ATHSGHVTVYA-PPYWLQKPQDTEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESD 397 (1051)
T ss_pred ceeeEEEEEec-CchhhcccceeEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEeccccc
Confidence 34556666665 4888889999999999999999999 799999999999999996444433334457789999999999
Q ss_pred CceEEEEEEcCCCCcccceeEEEEeec-ceEEeCCCce--eEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-CCCCCeeee
Q psy573 92 DGRYQCVVKNVAGTRESTDAVLRVLVK-PYIIRGPKDT--TVSAGSIIVFECSVGGDAVLTVHWKRLGSA-MPEDRMSVL 167 (216)
Q Consensus 92 ~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~~~~~~~~ 167 (216)
+|.|.|.++|..|.. ...+.|.|... |.+...+... .+..|..+.|.|...+.|.+.+.|.+++.. +..+++.+.
T Consensus 398 sg~YQC~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~ 476 (1051)
T KOG3513|consen 398 SGVYQCIAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRIL 476 (1051)
T ss_pred CeEEEeeeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEEC
Confidence 999999999998876 45678888765 6666665555 666899999999999999999999998883 456778888
Q ss_pred cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573 168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH 213 (216)
Q Consensus 168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~ 213 (216)
.+++|.|.+++.+|+|.|+|.|.|..|.......|.|++++.+...
T Consensus 477 edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~ 522 (1051)
T KOG3513|consen 477 EDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLA 522 (1051)
T ss_pred CCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEec
Confidence 9999999999999999999999999999999999999998877663
No 2
>KOG3513|consensus
Probab=99.96 E-value=6.3e-27 Score=185.70 Aligned_cols=186 Identities=27% Similarity=0.495 Sum_probs=156.3
Q ss_pred ccceEec-ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 24 REEFRVQ-PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 24 ~~~~~~~-~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
+|.+... |.......|+.+.|.|.+ .+.|.|++.|+|.+... ..........+..|.|.+++.+|+|.|.|.++|.
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA-~G~P~P~i~W~k~~g~~--~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~ 316 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFA-LGNPTPQIKWRKVDGKP--PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENS 316 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEe-cCCCCCcEEEEeCCCCC--CCcceeeeccccEEEecccCcCCCeEEEEEEecc
Confidence 4555443 446788899999999998 89999999999987642 1111222334568999999999999999999999
Q ss_pred CCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe---eeecCCeEEEecCCC
Q psy573 103 AGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM---SVLPSRSLQLSDVRL 179 (216)
Q Consensus 103 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~ 179 (216)
.|.. .....+.|..+|.+...+.+..+..|+++.+.|.+.|.|.|++.|.+|+..+..... .....++|.|.++..
T Consensus 317 ~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~ 395 (1051)
T KOG3513|consen 317 RGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQE 395 (1051)
T ss_pred cccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEeccc
Confidence 9854 667899999999999999999999999999999999999999999999998864433 455778999999999
Q ss_pred CCCeEEEEEEEcCCcceEEEEEEEEEec-ceeeec
Q psy573 180 EDGGEYVCEAENAVGKISASATLTVQSK-YLKVIH 213 (216)
Q Consensus 180 ~d~g~y~C~~~n~~~~~~~~~~l~v~~~-p~~~~~ 213 (216)
.|+|.|.|.|.|..|..-..+.|.|.+. |.+...
T Consensus 396 ~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~ 430 (1051)
T KOG3513|consen 396 SDSGVYQCIAENKYGTIYANAELKVLASAPVFPLN 430 (1051)
T ss_pred ccCeEEEeeeecccceEeeeeEEEEEccCCCCCCC
Confidence 9999999999999999999999999976 665543
No 3
>KOG4222|consensus
Probab=99.94 E-value=2.4e-26 Score=181.61 Aligned_cols=210 Identities=42% Similarity=0.753 Sum_probs=193.8
Q ss_pred cccchhhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEE
Q psy573 4 KKTKKEKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLA 83 (216)
Q Consensus 4 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~ 83 (216)
+++..+.+.|..+.|.+...+.+|.+.|....+..|+.+.|.|.-+.+.|.+.+.|.|+|+.+......+..+..++.|.
T Consensus 111 asn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~Ll 190 (1281)
T KOG4222|consen 111 ASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLL 190 (1281)
T ss_pred ecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEE
Confidence 56677888999999999999999999999999999999999999888999999999999999976667777778889999
Q ss_pred EcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC
Q psy573 84 IQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR 163 (216)
Q Consensus 84 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~ 163 (216)
|.++...|+|.|.|.++|..|.-.+...+|.|..+|.+...+....+..|..+.+.|.+.|.|.|.+.|.+++..++..+
T Consensus 191 IsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~r 270 (1281)
T KOG4222|consen 191 ISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSR 270 (1281)
T ss_pred EeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccc
Confidence 99999999999999999999987788889999999999999999999999999999999999999999999999998888
Q ss_pred eeeecC-CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573 164 MSVLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH 213 (216)
Q Consensus 164 ~~~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~ 213 (216)
+.+..+ .+|.|..+...|.|.|.|.+.|..|...+...++|+++|.+...
T Consensus 271 y~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kk 321 (1281)
T KOG4222|consen 271 YSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKK 321 (1281)
T ss_pred eeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccc
Confidence 877655 89999999999999999999999999999999999999987654
No 4
>KOG4221|consensus
Probab=99.94 E-value=4.4e-25 Score=175.55 Aligned_cols=202 Identities=31% Similarity=0.525 Sum_probs=170.0
Q ss_pred hhhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573 9 EKEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88 (216)
Q Consensus 9 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 88 (216)
+.-.+..+.|.+... ++|...+.+.++..|+.+.|.|.+ .+.+.+.+.|.++..++.. ..++....++.|.|..++
T Consensus 126 gsi~Sr~a~v~~a~~-~~f~~~~~~~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~--~~r~i~lpsG~L~I~~~q 201 (1381)
T KOG4221|consen 126 GSILSRTAKVALAGL-ADFALQPESTTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPL--DSRVIVLPSGALEISGLQ 201 (1381)
T ss_pred ceeecceEEEEeccc-CccccCccceeEecCCcEEEEEEE-cCccCceeEEecccccccC--CCcEEEcCCCcEEecccc
Confidence 344566777777665 788889999999999999999999 7788889999999887743 347777888999999999
Q ss_pred CCCCceEEEEEEcCCCCcccceeEEEEeecc------eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC
Q psy573 89 KTDDGRYQCVVKNVAGTRESTDAVLRVLVKP------YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED 162 (216)
Q Consensus 89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p------~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~ 162 (216)
..|.|.|+|.+++......+....|.|...+ .+...+....+.+|+.+.|.|.+.+.|.|.+.|.+|+..+..+
T Consensus 202 p~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~d 281 (1381)
T KOG4221|consen 202 PSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVD 281 (1381)
T ss_pred cCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeec
Confidence 9999999999998776655777788887544 3455667778899999999999999999999999999988766
Q ss_pred C--eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeecc
Q psy573 163 R--MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHL 214 (216)
Q Consensus 163 ~--~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~ 214 (216)
. ......+.|.|.+++..|+|.|+|.+.|...+..++..|.|..+|.++...
T Consensus 282 s~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p 335 (1381)
T KOG4221|consen 282 SYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAP 335 (1381)
T ss_pred ceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCC
Confidence 4 334456789999999999999999999988888889999999999887643
No 5
>KOG4194|consensus
Probab=99.93 E-value=2.8e-25 Score=166.34 Aligned_cols=192 Identities=29% Similarity=0.491 Sum_probs=156.9
Q ss_pred eccceEecccceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccc---------cCceEEEec-----CcEEEEccc
Q psy573 23 LREEFRVQPKSQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFE---------NSKRLRLVD-----GTNLAIQDS 87 (216)
Q Consensus 23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~---------~~~~~~~~~-----~~~l~i~~~ 87 (216)
..|++..+|+.+....|.+++|+|.+..+ ..+..+.|.+++...... ...+....+ .+-|++.|+
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nV 581 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNV 581 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeee
Confidence 35788888999999999999999998332 334589999987632110 001101111 135999999
Q ss_pred CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc-CCC---CC
Q psy573 88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA-MPE---DR 163 (216)
Q Consensus 88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~-~~~---~~ 163 (216)
...|+|.|.|.+.|..|...+..+.+.|...|.+...|.+.+...|+.+.|.|.+.|.|.|.|.|.|+|+. .+. .+
T Consensus 582 t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRR 661 (873)
T KOG4194|consen 582 TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERR 661 (873)
T ss_pred ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhe
Confidence 99999999999999999988889999999999999999999999999999999999999999999998875 443 23
Q ss_pred eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeecc
Q psy573 164 MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIHL 214 (216)
Q Consensus 164 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~ 214 (216)
+... ++..+.|.++..+|.|.|+|.+.|.+|..++..+|.|.+.|.+..++
T Consensus 662 l~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL 713 (873)
T KOG4194|consen 662 LHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPL 713 (873)
T ss_pred eeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccc
Confidence 3333 45679999999999999999999999999999999999998877653
No 6
>KOG4194|consensus
Probab=99.92 E-value=7.1e-24 Score=158.89 Aligned_cols=196 Identities=28% Similarity=0.492 Sum_probs=161.3
Q ss_pred hhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-eccccCceEEEe-cCcEEEEccc
Q psy573 10 KEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-IDFENSKRLRLV-DGTNLAIQDS 87 (216)
Q Consensus 10 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-~~~~~~~~~~~~-~~~~l~i~~~ 87 (216)
.--+-.+.|+|... |.|...|.+.++..|+.+.|.|.+ .|.|.|++.|-++|.. .......|.... ++..+.|.|+
T Consensus 599 Stysqk~KltV~~~-PsFtktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnv 676 (873)
T KOG4194|consen 599 STYSQKAKLTVNQA-PSFTKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNV 676 (873)
T ss_pred cchhheeEEEeecc-CccccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecc
Confidence 33456678888765 899999999999999999999998 8999999999998765 433344444443 4568999999
Q ss_pred CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCC-Cee
Q psy573 88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPED-RMS 165 (216)
Q Consensus 88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~-~~~ 165 (216)
+.+|+|.|+|.+.+..|.. +....|.|...|.+..+..+..+..|+++.|.|.+.+.|. |.+.|+|+++++... +..
T Consensus 677 k~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~ 755 (873)
T KOG4194|consen 677 KIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHT 755 (873)
T ss_pred cccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeeccc
Confidence 9999999999999999886 6678999999999888888999999999999999998886 999999999887533 222
Q ss_pred e-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573 166 V-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY 208 (216)
Q Consensus 166 ~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p 208 (216)
. ..+..+.+.+...+|.|.|+|...|..|.......+.+...+
T Consensus 756 f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 756 FPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKK 799 (873)
T ss_pred CCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecC
Confidence 2 234568888889999999999999999987777766655443
No 7
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.92 E-value=6.7e-23 Score=141.75 Aligned_cols=155 Identities=17% Similarity=0.227 Sum_probs=111.5
Q ss_pred ccceEEecCCcEEEEeeCCCC-----------CCCCeeEEeeCCEEeccc-cCce--------EE-EecCcEEEEcccCC
Q psy573 31 PKSQRVAAGDTALLECGPPRG-----------HPEPTLVWKKNGHPIDFE-NSKR--------LR-LVDGTNLAIQDSRK 89 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~-----------~~~~~~~W~~~~~~~~~~-~~~~--------~~-~~~~~~l~i~~~~~ 89 (216)
...+.+.+|+++.|.|.+ .+ ...+.+.|++++...-.. ...+ .. ...+..|.|.+++.
T Consensus 29 ~~~~~v~eGe~v~L~C~~-~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~ 107 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTG-KHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN 107 (227)
T ss_pred cceEEecCCCCEEEEccc-cccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh
Confidence 355788999999999986 33 235689999987542110 0010 00 12246899999999
Q ss_pred CCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCC-----CCCcEEEEeeCCccCCCC-C
Q psy573 90 TDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGG-----DAVLTVHWKRLGSAMPED-R 163 (216)
Q Consensus 90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~~-~ 163 (216)
+|+|.|.|.+.+..+.. ...+.|.|..+ +....+.+|+.+.|.|.+.+ .|.|++.|+|++..+... +
T Consensus 108 ~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 108 IDEGIYICTISSGNICE-ESTIRLTFDSG------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred HHCEEEEEEEEECCcce-EEEEEEEEecC------CccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 99999999999976553 44455666332 23446778999999999853 457899999999987643 3
Q ss_pred eeee-cCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 164 MSVL-PSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 164 ~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
.... ..+.|.|.+++.+|+|.|+|.+....
T Consensus 181 ~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 181 IQLRNNNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred EEEeCCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 3333 34579999999999999999998753
No 8
>KOG4221|consensus
Probab=99.90 E-value=8.8e-23 Score=162.67 Aligned_cols=191 Identities=30% Similarity=0.553 Sum_probs=159.7
Q ss_pred hhhceeeEEee-----ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc
Q psy573 13 EEKKKLKIEML-----REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS 87 (216)
Q Consensus 13 ~~~~~l~v~~~-----~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 87 (216)
|..++|+|... ...|...|....+.+|+.+.|.|.+ .+.|.+++.|.+++..++... .++.+...++|.|.++
T Consensus 221 S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~rivl~g~~slliS~a 298 (1381)
T KOG4221|consen 221 SNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIVLVGGSSLLISNA 298 (1381)
T ss_pred cceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEEEecccceEEecc
Confidence 66778888632 1246677888999999999999999 889999999999999986554 5666777889999999
Q ss_pred CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC-CCCCeee
Q psy573 88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PEDRMSV 166 (216)
Q Consensus 88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~~~~~~~ 166 (216)
+..|+|.|+|.+.|..... .....|.|..+|.+...+......++.++.+.|.+.+.|.+.+.|+|++..+ +.+...+
T Consensus 299 ~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki 377 (1381)
T KOG4221|consen 299 TDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKI 377 (1381)
T ss_pred ccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEe
Confidence 9999999999999855443 4467889999999998888888889999999999999999999999998765 4555555
Q ss_pred ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 167 LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 167 ~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
..+..+.|..+-..|.|.|.|.++|..|.......+.+..
T Consensus 378 ~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~ 417 (1381)
T KOG4221|consen 378 VGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVP 417 (1381)
T ss_pred cCCCCcEEEEEecccchhhhhhhccCcccccchhhheecc
Confidence 5555599999999999999999999999988777775543
No 9
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.89 E-value=2.7e-21 Score=141.78 Aligned_cols=180 Identities=24% Similarity=0.361 Sum_probs=123.5
Q ss_pred hhceeeEEeec-cceEecccceEEecCCcEEEEeeC----CCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC
Q psy573 14 EKKKLKIEMLR-EEFRVQPKSQRVAAGDTALLECGP----PRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR 88 (216)
Q Consensus 14 ~~~~l~v~~~~-~~~~~~~~~~~~~~G~~~~l~C~~----~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 88 (216)
..+.|+|.... +.+...+.+..+.+|..+.|.|.. ..+.+.+.+.|+++.. + ...++....++.|.|.+++
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~---~~~r~~~~~~~~L~i~~v~ 185 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L---RNKRLKQRTPGIITIEDVR 185 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c---CCcceEecCCCeEEEeecC
Confidence 44666665442 223333444567799999999972 1346788999998642 2 2334444556789999999
Q ss_pred CCCCceEEEEEEcCCCCccc---ceeEEEEee--cceEEeCCCceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccCC
Q psy573 89 KTDDGRYQCVVKNVAGTRES---TDAVLRVLV--KPYIIRGPKDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAMP 160 (216)
Q Consensus 89 ~~d~g~y~C~~~~~~~~~~~---~~~~l~v~~--~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~~ 160 (216)
.+|+|.|+|.+.+..+.... ..+.|.|.. .|.....|....+..|+.+.|.|.+.+.|. +.+.|++|+..+.
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~ 265 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE 265 (326)
T ss_pred hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence 99999999999987665321 223444432 222234456667778999999999998875 4799999998764
Q ss_pred CC------Ceeee-----------cCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573 161 ED------RMSVL-----------PSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197 (216)
Q Consensus 161 ~~------~~~~~-----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 197 (216)
.. +.... ....|.|.+++.+|.|.|+|.|.|..+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred CcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 31 11110 134699999999999999999999885533
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.87 E-value=3.2e-20 Score=136.15 Aligned_cols=167 Identities=20% Similarity=0.329 Sum_probs=118.1
Q ss_pred ceEEecCCcEEEEeeCC----CCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 33 SQRVAAGDTALLECGPP----RGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~----~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
...+.+|+++.|.|.+. .+.|.+.+.|||++.... .......+..|.|.++..+|+|.|+|.+.|..+.. .
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~----~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~ 109 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND----RIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-M 109 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc----eEEEccCCceEEEcccCcccCeEEEEEEECCCcce-E
Confidence 34567899999999862 466778999999875321 12223334468899999999999999999887654 3
Q ss_pred ceeEEEEeec--ceEEeCCCceeEeCCCcEEEEEEe-----CCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCC
Q psy573 109 TDAVLRVLVK--PYIIRGPKDTTVSAGSIIVFECSV-----GGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLED 181 (216)
Q Consensus 109 ~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 181 (216)
..+.|.|... +.+...+....+.+|..+.+.|.. .+.|.+.+.|++++ .+...+.....++.|.|.+++.+|
T Consensus 110 ~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d 188 (326)
T PHA02785 110 MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKND 188 (326)
T ss_pred EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhh
Confidence 4556666443 222222233456789999999972 45688999998864 344444444456789999999999
Q ss_pred CeEEEEEEEcCCcceE----EEEEEEEE
Q psy573 182 GGEYVCEAENAVGKIS----ASATLTVQ 205 (216)
Q Consensus 182 ~g~y~C~~~n~~~~~~----~~~~l~v~ 205 (216)
.|.|+|.+.|..|... +.+.|.|.
T Consensus 189 ~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 189 AGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 9999999999887643 34455554
No 11
>KOG4222|consensus
Probab=99.85 E-value=1.6e-20 Score=149.24 Aligned_cols=194 Identities=29% Similarity=0.435 Sum_probs=151.3
Q ss_pred eEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc-ccCceEEEecCcEEEEcccC-----CCCC
Q psy573 19 KIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF-ENSKRLRLVDGTNLAIQDSR-----KTDD 92 (216)
Q Consensus 19 ~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-----~~d~ 92 (216)
.-++.+|.++..|....+..|++++|.|.+ .+.|.+.+.||++|..... ....-..+..+++|.+..+. ..|.
T Consensus 26 r~qd~~p~iiehp~d~vvs~~~patlnc~a-sG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 26 RAQDQPPRIIEHPHDLVVSKGEPATLNCKA-SGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred ccccCCCceEecchhhhccCCCCceeecCC-CCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCC
Confidence 335667889999999999999999999998 8889999999999964422 22222223344555444331 2388
Q ss_pred ceEEEEEEcCCCCcccceeEEEEeecc-eEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCC---CCCeeee
Q psy573 93 GRYQCVVKNVAGTRESTDAVLRVLVKP-YIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMP---EDRMSVL 167 (216)
Q Consensus 93 g~y~C~~~~~~~~~~~~~~~l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~---~~~~~~~ 167 (216)
|.|+|.+.|..+...+....|.+..-+ .+.+.+....+..|+.+.|.|.- .+.|.+.+.|.|++..+. .......
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~li 184 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALI 184 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEe
Confidence 999999999988877777777765433 45556667788899999999986 778999999999998875 2334455
Q ss_pred cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEEecceeeec
Q psy573 168 PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQSKYLKVIH 213 (216)
Q Consensus 168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~~~p~~~~~ 213 (216)
.++.|.|.+++..|.|+|.|.+.|..|. .+....|+|.++|.|...
T Consensus 185 sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r 231 (1281)
T KOG4222|consen 185 SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR 231 (1281)
T ss_pred cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccc
Confidence 7889999999999999999999999998 666789999999988765
No 12
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.80 E-value=2.6e-18 Score=102.12 Aligned_cols=88 Identities=31% Similarity=0.460 Sum_probs=75.3
Q ss_pred cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197 (216)
Q Consensus 118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 197 (216)
+|.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.........+..|.|.++..+|+|.|+|.+.|..|...
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 80 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKDK 80 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCceE
Confidence 35667777888999999999999999999999999999887765433333556899999999999999999999999999
Q ss_pred EEEEEEEE
Q psy573 198 ASATLTVQ 205 (216)
Q Consensus 198 ~~~~l~v~ 205 (216)
..+.|.|+
T Consensus 81 ~~~~l~V~ 88 (88)
T cd05851 81 HQARVYVQ 88 (88)
T ss_pred EEEEEEEC
Confidence 99888763
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.80 E-value=2.4e-18 Score=104.21 Aligned_cols=93 Identities=30% Similarity=0.447 Sum_probs=79.5
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
|.+...+....+..|+.+.|.|.+.|.|.+.+.|+|++..+... +.... ..+.|.|.++..+|+|.|+|.+.|..|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 34566678889999999999999999999999999999988643 33332 246799999999999999999999999
Q ss_pred ceEEEEEEEEEecceee
Q psy573 195 KISASATLTVQSKYLKV 211 (216)
Q Consensus 195 ~~~~~~~l~v~~~p~~~ 211 (216)
....++.|.|.+.|..+
T Consensus 81 ~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 81 SRQAQVNLTVVDKPDPP 97 (98)
T ss_pred ceeEEEEEEEecCCCCC
Confidence 99999999999988543
No 14
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.73 E-value=1.8e-16 Score=94.50 Aligned_cols=85 Identities=31% Similarity=0.579 Sum_probs=71.7
Q ss_pred eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573 120 YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199 (216)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~ 199 (216)
.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+............|.|.+++.+|+|.|.|.+.|..|....+
T Consensus 3 ~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 82 (88)
T cd04968 3 IIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQ 82 (88)
T ss_pred cEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEE
Confidence 34555677788899999999999999999999999887665443333456789999999999999999999999999888
Q ss_pred EEEEE
Q psy573 200 ATLTV 204 (216)
Q Consensus 200 ~~l~v 204 (216)
..|.|
T Consensus 83 ~~l~V 87 (88)
T cd04968 83 GRIYV 87 (88)
T ss_pred EEEEE
Confidence 88876
No 15
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.72 E-value=1.8e-16 Score=96.04 Aligned_cols=91 Identities=25% Similarity=0.410 Sum_probs=75.0
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEc
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
|.|...+.+..+..|+.+.|.|.+ .+.|.+.+.|++++..+.... ++... ..+.|.|.++..+|+|.|+|.+.|
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~--~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGE--GIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCC--cEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 467778888999999999999999 788999999999999885332 33322 346799999999999999999999
Q ss_pred CCCCcccceeEEEEeecc
Q psy573 102 VAGTRESTDAVLRVLVKP 119 (216)
Q Consensus 102 ~~~~~~~~~~~l~v~~~p 119 (216)
..|.. ...+.|.|...|
T Consensus 78 ~~G~~-~~~~~l~V~~~P 94 (98)
T cd05762 78 KLGSR-QAQVNLTVVDKP 94 (98)
T ss_pred CCCce-eEEEEEEEecCC
Confidence 99886 446788887665
No 16
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.72 E-value=1.3e-16 Score=94.34 Aligned_cols=82 Identities=30% Similarity=0.530 Sum_probs=71.1
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
..|.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..........+.|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus 4 ~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05728 4 KVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAEL 83 (85)
T ss_pred ccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEE
Confidence 45667789999999999999999999999999999886554444466789999999999999999999999999888887
Q ss_pred EE
Q psy573 203 TV 204 (216)
Q Consensus 203 ~v 204 (216)
.|
T Consensus 84 ~V 85 (85)
T cd05728 84 AV 85 (85)
T ss_pred EC
Confidence 64
No 17
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.72 E-value=9.6e-17 Score=92.40 Aligned_cols=73 Identities=38% Similarity=0.616 Sum_probs=63.4
Q ss_pred CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+|+.+.|.|.+.|.|.|.+.|++++..+... +......+.|.|.++..+|.|.|+|.+.|..|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 5889999999999999999999999877644 333445678999999999999999999999999998888764
No 18
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.71 E-value=2.1e-16 Score=93.90 Aligned_cols=87 Identities=26% Similarity=0.517 Sum_probs=70.4
Q ss_pred ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+|.+...+.+..+.+|+.+.|.|.+ .+.|.|.+.|++++..+.. ..+.. ..++.|.|.+++.+|+|.|.|.+.|..
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~-~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 76 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPA--TAEIS-MSGAVLKIFNIQPEDEGTYECEAENIK 76 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCC--CCEEe-cCCCEEEECcCChhhCEEEEEEEEcCC
Confidence 5788888889999999999999998 8999999999999876632 22222 345689999999999999999999998
Q ss_pred CCcccceeEEEE
Q psy573 104 GTRESTDAVLRV 115 (216)
Q Consensus 104 ~~~~~~~~~l~v 115 (216)
|.. ...+.|.|
T Consensus 77 G~~-~~~~~l~V 87 (88)
T cd05851 77 GKD-KHQARVYV 87 (88)
T ss_pred Cce-EEEEEEEE
Confidence 875 33455544
No 19
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=2e-16 Score=90.38 Aligned_cols=72 Identities=26% Similarity=0.503 Sum_probs=62.4
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.+.|.|.+.|++++..+.. .+.....++.|.|.++..+|.|.|.|.+.|..|+...+..|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999886643 4455556788999999999999999999999999998888764
No 20
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=3.7e-16 Score=92.80 Aligned_cols=78 Identities=26% Similarity=0.380 Sum_probs=65.5
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeeec-------CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLP-------SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
|+.+.|.|.+.+.|.+.+.|++++..+... ++.... .+.|.|.++..+|.|.|+|.|.|..|..+..+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 688999999999999999999999876432 222221 15699999999999999999999999999999999
Q ss_pred EEeccee
Q psy573 204 VQSKYLK 210 (216)
Q Consensus 204 v~~~p~~ 210 (216)
|.++|..
T Consensus 81 V~~~P~~ 87 (88)
T cd05735 81 VQEPPDP 87 (88)
T ss_pred EeCCCCC
Confidence 9988753
No 21
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.69 E-value=5.8e-16 Score=93.94 Aligned_cols=80 Identities=18% Similarity=0.211 Sum_probs=67.4
Q ss_pred CceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCe-ee-ec-------CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 126 KDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRM-SV-LP-------SRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~~-~~-------~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
....+.+|+.+.|.|.+.+ .|.|.+.|+|++..+..... .. .. ...|.|..+..+|+|.|+|.|.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 4557889999999999999 89999999999988864322 11 11 367999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy573 196 ISASATLTVQ 205 (216)
Q Consensus 196 ~~~~~~l~v~ 205 (216)
.+.++.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999988875
No 22
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.68 E-value=1.5e-15 Score=91.89 Aligned_cols=80 Identities=26% Similarity=0.449 Sum_probs=67.6
Q ss_pred ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
...+..|+.+.|.|.+.|.|.|.+.|++++..+... +.... ....|.|.++..+|.|.|+|.+.|..|....++.|.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~ 91 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK 91 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence 347789999999999999999999999999877543 22222 335799999999999999999999999999999988
Q ss_pred EEe
Q psy573 204 VQS 206 (216)
Q Consensus 204 v~~ 206 (216)
|.+
T Consensus 92 V~~ 94 (95)
T cd05730 92 VFA 94 (95)
T ss_pred EEe
Confidence 865
No 23
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.68 E-value=1e-15 Score=88.56 Aligned_cols=72 Identities=29% Similarity=0.489 Sum_probs=61.3
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.|.|.|.+.|++++..+... .......+.|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999876532 122334678999999999999999999999999888888776
No 24
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.68 E-value=8.1e-16 Score=92.37 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=67.0
Q ss_pred CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee-c---CCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573 124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL-P---SRSLQLSDVRLEDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~-~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 198 (216)
.|....+.+|+.+.|.|.+.+.|.|.+.|++++..+... +.... . ...|.|.++..+|+|.|+|.+.|..|....
T Consensus 7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CCceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 345668889999999999999999999999999887543 33322 1 236999999999999999999999999888
Q ss_pred EEEEEE
Q psy573 199 SATLTV 204 (216)
Q Consensus 199 ~~~l~v 204 (216)
.+.|.|
T Consensus 87 ~~~v~v 92 (92)
T cd05737 87 DVTVSV 92 (92)
T ss_pred EEEEeC
Confidence 887764
No 25
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.68 E-value=6.3e-16 Score=87.79 Aligned_cols=69 Identities=49% Similarity=0.885 Sum_probs=61.2
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|++++..++..+........|.|.++..+|+|.|+|.+.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 478999999999999999998887776666667788999999999999999999999999888887754
No 26
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.68 E-value=9.4e-16 Score=88.57 Aligned_cols=72 Identities=21% Similarity=0.360 Sum_probs=61.5
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCC---CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED---RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.|.|.|++.|++++..+... .......+.|.|.+++.+|.|.|.|.+.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 678999999999999999999999887432 222334568999999999999999999999999999998876
No 27
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.68 E-value=1.3e-15 Score=91.46 Aligned_cols=85 Identities=33% Similarity=0.566 Sum_probs=71.6
Q ss_pred cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeeec---CCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLP---SRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
+|.+...+....+..|+.+.|.|.+.+.|.|.+.|++++..+... +..... .+.|.|.++..+|+|.|.|.+.|..
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~ 82 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENSE 82 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcCC
Confidence 466667778889999999999999999999999999998876543 333322 3579999999999999999999999
Q ss_pred cceEEEEEE
Q psy573 194 GKISASATL 202 (216)
Q Consensus 194 ~~~~~~~~l 202 (216)
|..+.++.|
T Consensus 83 G~~~~~~~l 91 (92)
T cd05747 83 GKQEAQFTL 91 (92)
T ss_pred CCEeEEEEe
Confidence 998888765
No 28
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=6.4e-16 Score=88.58 Aligned_cols=69 Identities=29% Similarity=0.484 Sum_probs=57.6
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCC--CCeeeec--CC--eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPE--DRMSVLP--SR--SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~--~~~~~~~--~~--~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|+|++..+.. .++.... .+ +|.|.++..+|+|.|+|.+.|..|....+..|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47899999999999999999988763 3333322 22 7999999999999999999999999998888764
No 29
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.67 E-value=1.3e-15 Score=89.97 Aligned_cols=77 Identities=30% Similarity=0.429 Sum_probs=65.3
Q ss_pred eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
..+..|+.+.|.|.+.|.|.|.+.|++++..+... +.... ..+.|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus 5 ~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l 84 (86)
T cd05894 5 IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV 84 (86)
T ss_pred EEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence 46788999999999999999999999999887542 33332 23579999999999999999999999998888877
Q ss_pred EE
Q psy573 203 TV 204 (216)
Q Consensus 203 ~v 204 (216)
.|
T Consensus 85 ~V 86 (86)
T cd05894 85 KV 86 (86)
T ss_pred EC
Confidence 64
No 30
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.67 E-value=1.1e-15 Score=92.92 Aligned_cols=79 Identities=19% Similarity=0.197 Sum_probs=66.9
Q ss_pred ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee----------cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL----------PSRSLQLSDVRLEDGGEYVCEAENAVGKI 196 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~ 196 (216)
...+..|+.+.|.|.+.|.|.|.+.|+|++..+........ ..++|.|..+..+|+|.|+|.|.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 45777899999999999999999999999998864432111 13579999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy573 197 SASATLTVQ 205 (216)
Q Consensus 197 ~~~~~l~v~ 205 (216)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 999888875
No 31
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.67 E-value=8.7e-16 Score=87.45 Aligned_cols=70 Identities=23% Similarity=0.355 Sum_probs=60.5
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
+.|.|.+.|.|.|.+.|+|++..+............|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4689999999999999999999887665555566889999999999999999999999988877777654
No 32
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.67 E-value=3.3e-15 Score=96.79 Aligned_cols=114 Identities=17% Similarity=0.266 Sum_probs=82.5
Q ss_pred EEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCC-CC-cEEEEeeCCcc
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGD-AV-LTVHWKRLGSA 158 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~i~W~~~~~~ 158 (216)
+|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|..+|.+...+.......|+.+.|.|.+.+. |. +.|.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 68999999999999999998876654 56678899999988776665555578899999999886 43 48999998754
Q ss_pred CCC-----CCe-----eeecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 159 MPE-----DRM-----SVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 159 ~~~-----~~~-----~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
... ... ....+ +.|.+..-...+.+.|+|.+.|....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred CccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 211 111 11122 34555555555677999999886543
No 33
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.67 E-value=7.6e-16 Score=85.93 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=56.5
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
+.|.|.+.|.|.|.+.|+|++..+... ...+.|.|.++..+|+|.|+|.+.|..|...+++.|.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~----~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK----HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc----CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 468999999999999999999887532 134689999999999999999999999987777777654
No 34
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.67 E-value=2e-15 Score=89.73 Aligned_cols=84 Identities=50% Similarity=1.045 Sum_probs=67.2
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 109 (216)
.|....+.+|+++.|.|.+..+.|.+.+.|++++..+... ..+.....++.|.|.+++.+|+|.|.|.+.|..|...+.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLD-NERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCC-CCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 4667889999999999987567888999999999887543 334445556789999999999999999999988876555
Q ss_pred eeEEE
Q psy573 110 DAVLR 114 (216)
Q Consensus 110 ~~~l~ 114 (216)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 55443
No 35
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.66 E-value=1.7e-15 Score=86.34 Aligned_cols=70 Identities=36% Similarity=0.617 Sum_probs=59.8
Q ss_pred cEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 135 IIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 135 ~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
.+.|.|.+.|.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999987654 3444455677999999999999999999999999998888764
No 36
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.66 E-value=2.3e-15 Score=91.36 Aligned_cols=87 Identities=29% Similarity=0.526 Sum_probs=67.5
Q ss_pred cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------Ceeeec---CCeEEEecCCCCCCeEEEEE
Q psy573 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLP---SRSLQLSDVRLEDGGEYVCE 188 (216)
Q Consensus 118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~---~~~l~i~~~~~~d~g~y~C~ 188 (216)
.|.+...+.......|+.+.|.|.+.|.|.|.+.|++++..+... +..... .+.|.|.++..+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 355555555555666899999999999999999999988665322 111111 25799999999999999999
Q ss_pred EEcCCcceEEEEEEEE
Q psy573 189 AENAVGKISASATLTV 204 (216)
Q Consensus 189 ~~n~~~~~~~~~~l~v 204 (216)
+.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999888764
No 37
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.66 E-value=2.9e-15 Score=87.22 Aligned_cols=78 Identities=19% Similarity=0.474 Sum_probs=64.1
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
....+.+|+.+.|.|.+.+. .+.+.|+|++..+............|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 45678899999999999876 5689999999888654333334568999999999999999999999998877776653
No 38
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.66 E-value=1.7e-15 Score=88.39 Aligned_cols=75 Identities=27% Similarity=0.469 Sum_probs=62.6
Q ss_pred CcEEEEEEeCCC--CCcEEEEeeCCccCCCC----Ceee----ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 134 SIIVFECSVGGD--AVLTVHWKRLGSAMPED----RMSV----LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 134 ~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~----~~~~----~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
+++.|.|.+.+. +.+.|.|++++..+... ++.. ...+.|.|.+++..|+|.|+|.|.|..++.+.+..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468899999764 57889999999988631 2222 1346899999999999999999999999999999999
Q ss_pred EEecc
Q psy573 204 VQSKY 208 (216)
Q Consensus 204 v~~~p 208 (216)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99887
No 39
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.66 E-value=1.7e-15 Score=86.98 Aligned_cols=72 Identities=29% Similarity=0.586 Sum_probs=62.4
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.+.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.+.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999987753 3445555678999999999999999999999999998888764
No 40
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.66 E-value=2.5e-15 Score=89.93 Aligned_cols=81 Identities=31% Similarity=0.519 Sum_probs=66.9
Q ss_pred CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-e---ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573 124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-V---LPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~---~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~ 199 (216)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+...+.. . .....|.|.++..+|.|.|.|.|.|..|....+
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~ 85 (90)
T cd04972 6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS 85 (90)
T ss_pred CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence 445566889999999999999999999999999877543321 1 123579999999999999999999999999888
Q ss_pred EEEEE
Q psy573 200 ATLTV 204 (216)
Q Consensus 200 ~~l~v 204 (216)
+.|.|
T Consensus 86 ~~L~v 90 (90)
T cd04972 86 VQVTV 90 (90)
T ss_pred EEEeC
Confidence 88764
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.65 E-value=5.3e-15 Score=89.00 Aligned_cols=82 Identities=27% Similarity=0.529 Sum_probs=65.1
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCC-cEEEEee-CCccCCC-C-Ceeeec----CCeEEEecCCCCCCeEEEEEEEcCC-
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKR-LGSAMPE-D-RMSVLP----SRSLQLSDVRLEDGGEYVCEAENAV- 193 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~-~~~~~~~-~-~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~- 193 (216)
..|....+..|+.+.|.|.+.|.|. |.+.|++ ++..+.. . +..... .++|.|.+++.+|.|.|+|.|.|..
T Consensus 5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~ 84 (96)
T cd05865 5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE 84 (96)
T ss_pred EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence 4456667889999999999999985 7999998 6665543 2 222221 2579999999999999999999996
Q ss_pred cceEEEEEEEE
Q psy573 194 GKISASATLTV 204 (216)
Q Consensus 194 ~~~~~~~~l~v 204 (216)
|....++.|.|
T Consensus 85 g~~~~s~~l~v 95 (96)
T cd05865 85 GESEATVNVKI 95 (96)
T ss_pred CcEEEEEEEEE
Confidence 88888888776
No 42
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.65 E-value=1.2e-15 Score=87.59 Aligned_cols=69 Identities=29% Similarity=0.528 Sum_probs=57.4
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCC----eEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSR----SLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~----~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|+|++..+... +....... .|.|.++..+|+|.|+|.+.|..|..+.+..|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 478999999999999999999887542 33332222 6999999999999999999999999998888764
No 43
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.65 E-value=1.9e-15 Score=89.12 Aligned_cols=75 Identities=25% Similarity=0.404 Sum_probs=62.0
Q ss_pred CcEEEEEEeCCCCCc--EEEEeeCCccCCCC----Ceee-e---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 134 SIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSV-L---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 134 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~-~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
+++.|.|.+.+.|.| .+.|++++..+... +... . ..+.|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 468999999999876 58999999876432 1111 1 246899999999999999999999999999999999
Q ss_pred EEecc
Q psy573 204 VQSKY 208 (216)
Q Consensus 204 v~~~p 208 (216)
|.++|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 44
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.65 E-value=3e-15 Score=86.79 Aligned_cols=72 Identities=28% Similarity=0.415 Sum_probs=61.8
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.+.|.|.+.|++++..+.... ........|.|.++..+|.|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 6789999999999999999999998775432 23335678999999999999999999999999998888876
No 45
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.65 E-value=4e-15 Score=89.98 Aligned_cols=87 Identities=31% Similarity=0.584 Sum_probs=68.2
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEccc-----CCCCCceEEEEEEc
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDS-----RKTDDGRYQCVVKN 101 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~g~y~C~~~~ 101 (216)
|...|....+.+|+++.|.|.+ .+.|.+.+.|+|++..+......+.....++.+.|.++ ...|+|.|.|.+.|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 4567778888999999999998 78899999999999988544443444555667777776 58999999999999
Q ss_pred C-CCCcccceeEEE
Q psy573 102 V-AGTRESTDAVLR 114 (216)
Q Consensus 102 ~-~~~~~~~~~~l~ 114 (216)
. .|...+..+.|.
T Consensus 81 ~~~G~~~s~~~~l~ 94 (95)
T cd05722 81 DSLGSIVSRTARLT 94 (95)
T ss_pred CccCcEEEeeeEEe
Confidence 8 777655555554
No 46
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1.6e-15 Score=87.26 Aligned_cols=73 Identities=29% Similarity=0.607 Sum_probs=59.2
Q ss_pred cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
+|+.+.|.|.+ .+.|.|.+.|++++..+.. ..+.....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSV--DRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT 73 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCC--CCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence 68999999998 8999999999999988743 233444556789999999999999999999988875 3344443
No 47
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.65 E-value=2.4e-15 Score=85.74 Aligned_cols=69 Identities=38% Similarity=0.663 Sum_probs=58.8
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|++++..+...+.. ......|.|.++..+|.|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 468999999999999999998876544332 235578999999999999999999999999998888876
No 48
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.64 E-value=4.2e-15 Score=88.93 Aligned_cols=76 Identities=29% Similarity=0.574 Sum_probs=64.0
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
|+.+.|.|.+.+.|.|.+.|++++... ...++.....+.|.|.++..+|+|.|.|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 678999999999999999999987642 12234444567899999999999999999999999999999999
Q ss_pred EEecc
Q psy573 204 VQSKY 208 (216)
Q Consensus 204 v~~~p 208 (216)
|.+..
T Consensus 81 V~~~~ 85 (90)
T cd05726 81 VTDVI 85 (90)
T ss_pred Eeecc
Confidence 98754
No 49
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.64 E-value=7.7e-15 Score=87.58 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=66.3
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEE
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATL 202 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l 202 (216)
+....+.+|+.+.|.|.+.+. .|.+.|++++..+...+.... ..+.|.|.+++.+|.|.|.|.+.|..|. .+..+.|
T Consensus 10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L 88 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYIL 88 (91)
T ss_pred cCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEE
Confidence 345688899999999999999 999999999988766654443 3468999999999999999999999998 5557777
Q ss_pred EE
Q psy573 203 TV 204 (216)
Q Consensus 203 ~v 204 (216)
.|
T Consensus 89 ~V 90 (91)
T cd05740 89 NV 90 (91)
T ss_pred Ee
Confidence 65
No 50
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.64 E-value=6.4e-15 Score=90.14 Aligned_cols=91 Identities=31% Similarity=0.571 Sum_probs=67.2
Q ss_pred ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc---cCceEEEecCcEEEEc-----ccCCCCCceE
Q psy573 24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVDGTNLAIQ-----DSRKTDDGRY 95 (216)
Q Consensus 24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~~~~l~i~-----~~~~~d~g~y 95 (216)
+|.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.||+++..+... .........++.+.+. .+..+|+|.|
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y 79 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY 79 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence 4778888889999999999999998 78899999999999987541 1122222333333222 2368999999
Q ss_pred EEEEEcCCCCcccceeEEEE
Q psy573 96 QCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 96 ~C~~~~~~~~~~~~~~~l~v 115 (216)
+|.+.|..|...+..+.|.|
T Consensus 80 ~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 80 VCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEccccceecceEEEEe
Confidence 99999999875566666654
No 51
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.64 E-value=2.2e-15 Score=90.32 Aligned_cols=86 Identities=38% Similarity=0.669 Sum_probs=72.4
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... +.... ....|.|.++..+|.|.|+|.+.|..|
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g 80 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG 80 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence 45666678889999999999999999999999999998887643 33222 346799999999999999999999999
Q ss_pred ceEEEEEEEE
Q psy573 195 KISASATLTV 204 (216)
Q Consensus 195 ~~~~~~~l~v 204 (216)
..+..+.|.|
T Consensus 81 ~~~~~~~l~V 90 (90)
T PF07679_consen 81 EATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEE
T ss_pred EEEEEEEEEC
Confidence 9999988875
No 52
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.64 E-value=5.3e-15 Score=88.86 Aligned_cols=81 Identities=30% Similarity=0.597 Sum_probs=67.2
Q ss_pred eccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEE
Q psy573 23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVV 99 (216)
Q Consensus 23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~ 99 (216)
.||.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ..++... ..+.|.|.++..+|+|.|.|.+
T Consensus 2 ~~~~~~~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVS--SQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCC--CCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 36788888989999999999999998 8889999999999987643 2233332 2358999999999999999999
Q ss_pred EcCCCCc
Q psy573 100 KNVAGTR 106 (216)
Q Consensus 100 ~~~~~~~ 106 (216)
.|..|..
T Consensus 79 ~N~~G~~ 85 (92)
T cd05747 79 ENSEGKQ 85 (92)
T ss_pred EcCCCCE
Confidence 9988764
No 53
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.64 E-value=3.2e-15 Score=85.37 Aligned_cols=72 Identities=31% Similarity=0.674 Sum_probs=59.2
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
|+.+.|.|.+ .+.|.+.+.|++++..+. ...++....+++|.|.+++.+|+|.|.|.+.|..|.. ..+..|.
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~--~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLV--NNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS 72 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecc--cCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence 7889999998 788999999999998763 3456666677899999999999999999999988875 3344443
No 54
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.64 E-value=4e-15 Score=89.34 Aligned_cols=75 Identities=28% Similarity=0.541 Sum_probs=60.2
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--CcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|+.+.+.+|+.+.|.|.+ .+.|.|.+.||+++..+............ ..+|.|.+++.+|+|.|+|.+.|..|..
T Consensus 8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE 84 (92)
T ss_pred CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc
Confidence 455789999999999998 78899999999999988543322232221 2479999999999999999999988865
No 55
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.63 E-value=3.3e-15 Score=90.62 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=63.3
Q ss_pred ceEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEec-------CcEEEEcccCCCCCceEEEEEEcCCC
Q psy573 33 SQRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
.+.+.+|+++.|.|.+ .+ .|.|.+.|+|+|..+...... ..... ...|.|..+..+|+|.|+|.+.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKLTE-IVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCcce-eEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 5788999999999999 77 899999999999988532221 21221 36799999999999999999999988
Q ss_pred CcccceeEEEEe
Q psy573 105 TRESTDAVLRVL 116 (216)
Q Consensus 105 ~~~~~~~~l~v~ 116 (216)
.. ..++.|.|.
T Consensus 90 ~~-~~t~~L~V~ 100 (101)
T cd04975 90 SK-SLTFELYVN 100 (101)
T ss_pred cE-EEEEEEEEE
Confidence 64 445666553
No 56
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.63 E-value=2.6e-15 Score=84.77 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=57.0
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
+.|.|.+.|.|.|.+.|+|++..+.... .......|.|.++..+|+|.|+|.+.|..|......++.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCC-EEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 3689999999999999999999886543 23345679999999999999999999999987666665543
No 57
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.63 E-value=1.2e-14 Score=88.98 Aligned_cols=87 Identities=36% Similarity=0.601 Sum_probs=65.8
Q ss_pred cceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------CeeeecCCeEEEe-----cCCCCCCeEEE
Q psy573 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVLPSRSLQLS-----DVRLEDGGEYV 186 (216)
Q Consensus 118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~~~~~l~i~-----~~~~~d~g~y~ 186 (216)
+|.+...+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... .......+.+.+. .+..+|.|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 366677778889999999999999999999999999999877541 1122223332222 23688999999
Q ss_pred EEEEcCCcc-eEEEEEEEE
Q psy573 187 CEAENAVGK-ISASATLTV 204 (216)
Q Consensus 187 C~~~n~~~~-~~~~~~l~v 204 (216)
|.+.|..|. .++.+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999998 777777665
No 58
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.63 E-value=6.9e-15 Score=90.89 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=64.2
Q ss_pred CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--Ceeee-------cCCeEEEecCC-CCCCeEEEEEEEcCCcceEEEEE
Q psy573 132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVL-------PSRSLQLSDVR-LEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
.|..+.|.|.+.|.|.+.+.|++++..+... ++... ..+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 4678999999999999999999999877532 22111 13579999987 58999999999999999999999
Q ss_pred EEEEecce
Q psy573 202 LTVQSKYL 209 (216)
Q Consensus 202 l~v~~~p~ 209 (216)
|.+.++|.
T Consensus 102 L~~~~~p~ 109 (109)
T cd05773 102 LVSTSRPD 109 (109)
T ss_pred EEecCCCC
Confidence 99988773
No 59
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=5.5e-15 Score=88.10 Aligned_cols=87 Identities=25% Similarity=0.496 Sum_probs=67.8
Q ss_pred ccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 24 REEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 24 ~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
|+.+...|.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .... ..++.|.|.+++.+|+|.|.|.+.|..
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 76 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSS--AEIS-MSGAVLKIPNIQFEDEGTYECEAENIK 76 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCc--cEEE-EeCCEEEECCCCcccCEEEEEEEEECC
Confidence 3456667888889999999999998 78899999999987755222 2222 456789999999999999999999988
Q ss_pred CCcccceeEEEE
Q psy573 104 GTRESTDAVLRV 115 (216)
Q Consensus 104 ~~~~~~~~~l~v 115 (216)
|.. .....|.|
T Consensus 77 G~~-~~~~~l~V 87 (88)
T cd04968 77 GKD-THQGRIYV 87 (88)
T ss_pred CcE-EEEEEEEE
Confidence 875 33455544
No 60
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.63 E-value=6.8e-15 Score=87.18 Aligned_cols=77 Identities=29% Similarity=0.523 Sum_probs=63.8
Q ss_pred eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe----ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~----~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
..+.+|+.+.|.|.+.+.|.|.+.|++++..+..... .. .....|.|.++..+|+|.|+|.+.|..|....++.|
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 3577899999999999999999999999988754321 11 133568999999999999999999999999988887
Q ss_pred EE
Q psy573 203 TV 204 (216)
Q Consensus 203 ~v 204 (216)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 64
No 61
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=1.1e-14 Score=88.52 Aligned_cols=85 Identities=32% Similarity=0.619 Sum_probs=65.9
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC--CccCC------CCCeeee---cCCeEEEecCCCCCCeEEEE
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL--GSAMP------EDRMSVL---PSRSLQLSDVRLEDGGEYVC 187 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~--~~~~~------~~~~~~~---~~~~l~i~~~~~~d~g~y~C 187 (216)
|.+.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+++ +..+. ..++... ....|.|.++..+|+|.|.|
T Consensus 3 p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C 81 (98)
T cd05870 3 PHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDC 81 (98)
T ss_pred CEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEE
Confidence 44443 4677889999999999999999999999994 33221 1223222 13579999999999999999
Q ss_pred EEEcCCcceEEEEEEEE
Q psy573 188 EAENAVGKISASATLTV 204 (216)
Q Consensus 188 ~~~n~~~~~~~~~~l~v 204 (216)
.+.|..|....++.|.|
T Consensus 82 ~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 82 EAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEeccCCcceeEEEEeC
Confidence 99999999888887764
No 62
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=4.8e-15 Score=87.72 Aligned_cols=75 Identities=28% Similarity=0.484 Sum_probs=62.0
Q ss_pred CcEEEEEEeCCCCCc--EEEEeeCCccCCCCC----e--e--eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 134 SIIVFECSVGGDAVL--TVHWKRLGSAMPEDR----M--S--VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 134 ~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~----~--~--~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
+.+.|.|.+.+.|.| .+.|++++..+.... . . ....+.|.|.+++..|+|.|+|.+.|..|..+.++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468999999998877 679999998765321 1 1 12356899999999999999999999999999999999
Q ss_pred EEecc
Q psy573 204 VQSKY 208 (216)
Q Consensus 204 v~~~p 208 (216)
|.++|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 63
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.62 E-value=3.3e-15 Score=84.73 Aligned_cols=67 Identities=33% Similarity=0.624 Sum_probs=57.9
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
+.|.|.+.|.|.|.+.|++++..+.. .+......+.|.|.++..+|.|.|+|.+.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 47899999999999999999987754 34445557889999999999999999999999998888776
No 64
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.62 E-value=6.1e-15 Score=85.31 Aligned_cols=75 Identities=33% Similarity=0.614 Sum_probs=58.5
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
|+.+.|.|.+ .+.|.|.+.|++++..+............++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 7899999998 788999999999999875433221223346789999999999999999999988875 33455544
No 65
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.62 E-value=6.7e-15 Score=88.24 Aligned_cols=88 Identities=31% Similarity=0.630 Sum_probs=70.0
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCC
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
|.|...+.+..+.+|+++.|.|.+ .+.|.+.+.|++++..+............ ...|.|.++..+|+|.|+|.+.+..
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 567778889999999999999998 67788999999999998654444443333 4579999999999999999999986
Q ss_pred CCcccceeEEE
Q psy573 104 GTRESTDAVLR 114 (216)
Q Consensus 104 ~~~~~~~~~l~ 114 (216)
+.. ...+.|.
T Consensus 80 g~~-~~~~~l~ 89 (90)
T PF07679_consen 80 GEA-TASVNLT 89 (90)
T ss_dssp EEE-EEEEEEE
T ss_pred CEE-EEEEEEE
Confidence 654 3344444
No 66
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.62 E-value=8.9e-15 Score=82.65 Aligned_cols=68 Identities=22% Similarity=0.484 Sum_probs=55.5
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
|+.+.|.|.+.|.|.|.+.|++++..+............|.|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 678999999999999999999999877544333334457888887 47999999999999998887765
No 67
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.62 E-value=1.3e-14 Score=87.83 Aligned_cols=82 Identities=32% Similarity=0.710 Sum_probs=64.8
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 110 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 110 (216)
....+..|+.+.|.|.+ .+.|.+.+.|++++..+... ..++... .+..|.|.++..+|+|.|+|.+.|..|.. ...
T Consensus 11 ~~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~ 87 (95)
T cd05730 11 VNATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG-EEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAE 87 (95)
T ss_pred cceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC-CCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeE-EEE
Confidence 34578999999999998 78899999999999887433 2333333 34579999999999999999999998875 445
Q ss_pred eEEEEe
Q psy573 111 AVLRVL 116 (216)
Q Consensus 111 ~~l~v~ 116 (216)
+.|.|.
T Consensus 88 ~~L~V~ 93 (95)
T cd05730 88 IHLKVF 93 (95)
T ss_pred EEEEEE
Confidence 666654
No 68
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=7.4e-15 Score=87.53 Aligned_cols=85 Identities=22% Similarity=0.501 Sum_probs=65.4
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecCc---EEEEcccCCCCCceEEEEEEcC
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDGT---NLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
+.+.+.+..+.+|+.+.|.|.+ .+.|. .+.||++ +..+.. ..++....++ .|.|.++..+|+|.|+|.+.|.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~--~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVS--SQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecC--CCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence 4566777889999999999998 77787 8999984 555532 3344444333 7999999999999999999999
Q ss_pred CCCcccceeEEEE
Q psy573 103 AGTRESTDAVLRV 115 (216)
Q Consensus 103 ~~~~~~~~~~l~v 115 (216)
.|.....++.|.+
T Consensus 79 ~G~~~~~~i~l~~ 91 (92)
T cd05866 79 KGQTQEATVVLEI 91 (92)
T ss_pred CCcEEEEEEEEEE
Confidence 8876555555544
No 69
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.62 E-value=1.1e-14 Score=86.92 Aligned_cols=81 Identities=26% Similarity=0.453 Sum_probs=65.1
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
.+.+..+.+|++++|.|.+ .+. .+.+.|++++..+.. .++... .+..|.|.+++.+|+|.|.|.+.|..|...+
T Consensus 9 ~~~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 9 SVGNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVP---PRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred ccCccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCC---CCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 3456789999999999998 677 899999999987732 233333 4568999999999999999999999987666
Q ss_pred ceeEEEE
Q psy573 109 TDAVLRV 115 (216)
Q Consensus 109 ~~~~l~v 115 (216)
..+.|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 6666655
No 70
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.62 E-value=6.9e-15 Score=84.94 Aligned_cols=75 Identities=29% Similarity=0.604 Sum_probs=59.3
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
|+.+.|.|.+ .+.|.|.+.|++++..+...........++..|.|.+++..|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 7899999999 889999999999999885332222223445689999999999999999999998876 44556654
No 71
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.61 E-value=1.9e-14 Score=85.44 Aligned_cols=79 Identities=37% Similarity=0.665 Sum_probs=64.6
Q ss_pred CCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCC--CCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEE
Q psy573 125 PKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPE--DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASA 200 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~ 200 (216)
|....+.+|+++.|.|.+ .+.|.|.+.|++++..+.. .+......+.|.|.++..+|+|.|+|.+.|..|.. +..+
T Consensus 3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeE
Confidence 456788899999999998 7889999999999987654 23444456789999999999999999999999984 4555
Q ss_pred EEE
Q psy573 201 TLT 203 (216)
Q Consensus 201 ~l~ 203 (216)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
No 72
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=2.8e-14 Score=85.89 Aligned_cols=87 Identities=38% Similarity=0.615 Sum_probs=66.2
Q ss_pred cceEecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573 25 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 100 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~ 100 (216)
|.|...|..+.+.+| +.+.|.|.+ .+.|.+.+.|++++..+......++... ++.|.|.+.. ..|+|.|.|.+.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~-~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV-AGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE-CCeEEEccCCccCcCEEEEEEEE
Confidence 456667777766666 579999998 8889999999999998854434444443 5679998865 599999999999
Q ss_pred cCCCCcccceeEE
Q psy573 101 NVAGTRESTDAVL 113 (216)
Q Consensus 101 ~~~~~~~~~~~~l 113 (216)
|..|...+..+.|
T Consensus 80 N~~G~~~s~~a~l 92 (94)
T cd05850 80 NRCGTVVSREANL 92 (94)
T ss_pred cCcCcEEEEEEEE
Confidence 9988765544443
No 73
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.61 E-value=7.2e-15 Score=84.49 Aligned_cols=70 Identities=29% Similarity=0.464 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCC---CCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~ 205 (216)
+.|.|.+.|.|.|.+.|++++..+. ..+......+.|.|.+++.+|.|.|+|.+.|..|. .+....|.|+
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 4789999999999999999988764 23444445678999999999999999999999998 5777777763
No 74
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.61 E-value=4e-14 Score=85.19 Aligned_cols=84 Identities=24% Similarity=0.412 Sum_probs=61.9
Q ss_pred ceEEeCCCceeEeCC---CcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573 119 PYIIRGPKDTTVSAG---SIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDGGEYVCEAENA 192 (216)
Q Consensus 119 p~~~~~~~~~~~~~g---~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 192 (216)
|.+...|....+.+| +.+.|.|.+.+.|.|.+.|++++..+... .......+.|.|.++. ..|.|.|.|.|.|.
T Consensus 2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05850 2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINR 81 (94)
T ss_pred CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcC
Confidence 344455555555444 68999999999999999999999887532 2222345778887765 68999999999999
Q ss_pred Ccce-EEEEEE
Q psy573 193 VGKI-SASATL 202 (216)
Q Consensus 193 ~~~~-~~~~~l 202 (216)
.|.. ++.+.|
T Consensus 82 ~G~~~s~~a~l 92 (94)
T cd05850 82 CGTVVSREANL 92 (94)
T ss_pred cCcEEEEEEEE
Confidence 9984 445544
No 75
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.61 E-value=1.1e-14 Score=83.87 Aligned_cols=69 Identities=28% Similarity=0.469 Sum_probs=56.9
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecC----CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPS----RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~----~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|+|++..+... +...... ..|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 478999999999999999999887632 3333222 25999999999999999999999999988887754
No 76
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.61 E-value=2e-14 Score=86.51 Aligned_cols=86 Identities=35% Similarity=0.611 Sum_probs=64.9
Q ss_pred cceEecccceEEe---cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573 25 EEFRVQPKSQRVA---AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 100 (216)
Q Consensus 25 ~~~~~~~~~~~~~---~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~ 100 (216)
|.|...|.++.+. +|+.+.|.|.+ .+.|.+.+.|++++..+......++.. .++.|.|.++. .+|+|.|.|.+.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~-~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSL-IDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEe-eCCeEEEccCCccCcCEEEEEEEE
Confidence 5566677776554 47899999998 889999999999999885433333333 35689998875 699999999999
Q ss_pred cCCCCcccceeE
Q psy573 101 NVAGTRESTDAV 112 (216)
Q Consensus 101 ~~~~~~~~~~~~ 112 (216)
|..|...+..+.
T Consensus 80 N~~G~~~S~~~~ 91 (94)
T cd05848 80 NSIGSILSREAL 91 (94)
T ss_pred cCCCeEEeccEE
Confidence 988876444433
No 77
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.61 E-value=8.5e-15 Score=86.54 Aligned_cols=82 Identities=30% Similarity=0.580 Sum_probs=66.0
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|...|.+..+..|+.+.|.|.+ .+.|.+.+.|++++..+. ...++.. .++.|.|.++..+|+|.|+|.+.|..|..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~--~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLA--SENRIEV-EAGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECC--CCCeEEE-eCCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 4557778899999999999998 888999999999999873 2334433 45689999999999999999999988864
Q ss_pred ccceeEE
Q psy573 107 ESTDAVL 113 (216)
Q Consensus 107 ~~~~~~l 113 (216)
...+.|
T Consensus 78 -~~~~~l 83 (85)
T cd05728 78 -YASAEL 83 (85)
T ss_pred -EEEEEE
Confidence 334444
No 78
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.60 E-value=1.1e-14 Score=85.65 Aligned_cols=76 Identities=22% Similarity=0.500 Sum_probs=62.4
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee--cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
....|+.+.|.|.+.+.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.+.|..|.....+.|.|
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 456799999999999999999999999987754332222 2357999999999999999999999999888877653
No 79
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=3.4e-14 Score=85.13 Aligned_cols=84 Identities=23% Similarity=0.414 Sum_probs=61.3
Q ss_pred ceEEeCCCceeEeC---CCcEEEEEEeCCCCCcEEEEeeCCccCCC-CCeeeecCCeEEEecCC-CCCCeEEEEEEEcCC
Q psy573 119 PYIIRGPKDTTVSA---GSIIVFECSVGGDAVLTVHWKRLGSAMPE-DRMSVLPSRSLQLSDVR-LEDGGEYVCEAENAV 193 (216)
Q Consensus 119 p~~~~~~~~~~~~~---g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~~ 193 (216)
|.+...|....+.+ |..+.|.|.+.|.|.|++.|++++..+.. .......++.|.|.++. .+|+|.|.|.|.|..
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~ 81 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIY 81 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCc
Confidence 33444444444433 34799999999999999999999987742 22233456789998885 689999999999999
Q ss_pred cce-EEEEEE
Q psy573 194 GKI-SASATL 202 (216)
Q Consensus 194 ~~~-~~~~~l 202 (216)
|.. ++.+.|
T Consensus 82 G~~~s~~a~l 91 (93)
T cd05849 82 GKVRSREATL 91 (93)
T ss_pred ceEEEccEEE
Confidence 985 434444
No 80
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.60 E-value=1.8e-14 Score=82.99 Aligned_cols=70 Identities=26% Similarity=0.459 Sum_probs=58.4
Q ss_pred cEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 135 IIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 135 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
.+.|.|.+.|.|.|.+.|++++..+... +.... ....|.|.++..+|+|.|+|.+.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3689999999999999999999887433 33332 2357999999999999999999999999998888764
No 81
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.60 E-value=1.7e-14 Score=87.51 Aligned_cols=85 Identities=34% Similarity=0.537 Sum_probs=66.8
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC------Ceeee---cCCeEEEecCCCCCCeEEEEEE
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED------RMSVL---PSRSLQLSDVRLEDGGEYVCEA 189 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~------~~~~~---~~~~l~i~~~~~~d~g~y~C~~ 189 (216)
|.+. .+....+.+|+.+.|.|.+.+.|.|.+.|++++..+... +.... ..+.|.|.++..+|.|.|.|.+
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 81 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEA 81 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEE
Confidence 4443 345678889999999999999999999999988655321 12221 1247999999999999999999
Q ss_pred EcCCcceEEEEEEEE
Q psy573 190 ENAVGKISASATLTV 204 (216)
Q Consensus 190 ~n~~~~~~~~~~l~v 204 (216)
.|..|....++.|.|
T Consensus 82 ~N~~G~~~~s~~l~v 96 (96)
T cd05732 82 SNRIGGDQQSMYLEV 96 (96)
T ss_pred EeCCCCcEEEEEEeC
Confidence 999999988887764
No 82
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.60 E-value=2.9e-14 Score=85.45 Aligned_cols=81 Identities=26% Similarity=0.388 Sum_probs=66.3
Q ss_pred CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC-eee--ecC--CeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573 124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR-MSV--LPS--RSLQLSDVRLEDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~-~~~--~~~--~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 198 (216)
.|....+.+|+.+.|.|.+.+.|.|.+.|++++..+.... +.. ... ..|.|.++..+|+|.|+|.+.|..|....
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 3456788999999999999999999999999988765432 222 111 37999999999999999999999999998
Q ss_pred EEEEEE
Q psy573 199 SATLTV 204 (216)
Q Consensus 199 ~~~l~v 204 (216)
++.|.|
T Consensus 87 ~~~v~~ 92 (92)
T cd05891 87 DVTVSV 92 (92)
T ss_pred EEEEEC
Confidence 887764
No 83
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.60 E-value=1e-14 Score=83.85 Aligned_cols=73 Identities=37% Similarity=0.705 Sum_probs=60.0
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
++|.|.+ .+.|.|.+.||+++..+......++....++.|.|.+++.+|+|.|.|.+.|..|...+....|.|
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4799998 889999999999998875434556666667789999999999999999999998876566666654
No 84
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.60 E-value=4.2e-14 Score=85.09 Aligned_cols=83 Identities=27% Similarity=0.539 Sum_probs=61.4
Q ss_pred ceEEeCCCceeEe---CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC--eeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573 119 PYIIRGPKDTTVS---AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVLPSRSLQLSDVR-LEDGGEYVCEAENA 192 (216)
Q Consensus 119 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 192 (216)
|.+...+.+..+. +|+.+.|.|.+.|.|.|.+.|++++..+.... .....++.|.|.++. .+|.|.|.|.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~ 81 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcC
Confidence 3444455554433 46899999999999999999999998875321 222345778898874 68999999999999
Q ss_pred CcceE-EEEE
Q psy573 193 VGKIS-ASAT 201 (216)
Q Consensus 193 ~~~~~-~~~~ 201 (216)
.|... +.+.
T Consensus 82 ~G~~~S~~~~ 91 (94)
T cd05848 82 IGSILSREAL 91 (94)
T ss_pred CCeEEeccEE
Confidence 99853 3443
No 85
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.60 E-value=9.5e-15 Score=83.50 Aligned_cols=69 Identities=30% Similarity=0.658 Sum_probs=58.2
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCeee-ecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRMSV-LPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|++++..+...+... .....|.|.++..+|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 4689999999999999999988765443332 23468999999999999999999999999988888876
No 86
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=4e-14 Score=84.38 Aligned_cols=81 Identities=25% Similarity=0.494 Sum_probs=63.4
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecCC---eEEEecCCCCCCeEEEEEEEcCCcc-e
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPSR---SLQLSDVRLEDGGEYVCEAENAVGK-I 196 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~~---~l~i~~~~~~d~g~y~C~~~n~~~~-~ 196 (216)
..+.+..+..|+.+.|.|.+.|.|. .+.|+++ +..+. ..+......+ .|.|.++..+|+|.|+|.|.|..|. .
T Consensus 5 ~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~ 83 (92)
T cd05866 5 ISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQ 83 (92)
T ss_pred EEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEE
Confidence 4456678899999999999999997 8999984 54443 3344444333 7999999999999999999999998 4
Q ss_pred EEEEEEEE
Q psy573 197 SASATLTV 204 (216)
Q Consensus 197 ~~~~~l~v 204 (216)
.+++.|.+
T Consensus 84 ~~~i~l~~ 91 (92)
T cd05866 84 EATVVLEI 91 (92)
T ss_pred EEEEEEEE
Confidence 66666654
No 87
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.59 E-value=2.5e-14 Score=86.08 Aligned_cols=87 Identities=21% Similarity=0.503 Sum_probs=63.6
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCC-CeeEEee-CCEEeccccCceEEEec----CcEEEEcccCCCCCceEEEEEE
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKK-NGHPIDFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
+.+.|....+..|+.+.|.|.+ .+.|. +.+.|++ ++..+... ..++.... .+.|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~-~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~ 80 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPN-QQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVS 80 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCcccc-CCeEEEEeCCCCceEEEEeccChhhCEEEEEEEE
Confidence 4567777889999999999998 77774 6999998 67655321 22333321 2579999999999999999999
Q ss_pred cCCCCcccceeEEEE
Q psy573 101 NVAGTRESTDAVLRV 115 (216)
Q Consensus 101 ~~~~~~~~~~~~l~v 115 (216)
|..+.....++.|.|
T Consensus 81 N~~~g~~~~s~~l~v 95 (96)
T cd05865 81 NEDEGESEATVNVKI 95 (96)
T ss_pred cCCCCcEEEEEEEEE
Confidence 986333344555544
No 88
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=5.3e-14 Score=84.32 Aligned_cols=86 Identities=33% Similarity=0.587 Sum_probs=64.0
Q ss_pred cceEecccceEEecC---CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573 25 EEFRVQPKSQRVAAG---DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 100 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G---~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~ 100 (216)
|.|...|....+.++ ..+.|.|.+ .+.|.+.+.|++++..+... ..++. ..++.|.|.++. .+|+|.|.|.+.
T Consensus 2 P~f~~~P~~~~~~~~~~~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~-~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~ 78 (93)
T cd05849 2 PVFEEQPIDTIYPEESTEGKVSVNCRA-RANPFPIYKWRKNNLDIDLT-NDRYS-MVGGNLVINNPDKYKDAGRYVCIVS 78 (93)
T ss_pred CEEEECCCCEEecCCccCCeEEEeCcC-ccCCCCEEEEEECCEEccCC-CCeEE-EECCEEEECcCCcCCCCEEEEEEEE
Confidence 456666666555544 479999999 89999999999999887432 23443 346789999885 689999999999
Q ss_pred cCCCCcccceeEE
Q psy573 101 NVAGTRESTDAVL 113 (216)
Q Consensus 101 ~~~~~~~~~~~~l 113 (216)
|..|...+..+.|
T Consensus 79 N~~G~~~s~~a~l 91 (93)
T cd05849 79 NIYGKVRSREATL 91 (93)
T ss_pred eCcceEEEccEEE
Confidence 9988765544443
No 89
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.59 E-value=2.2e-14 Score=83.05 Aligned_cols=70 Identities=30% Similarity=0.575 Sum_probs=55.5
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCC--eeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceE--EEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDR--MSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKIS--ASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~--~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~--~~~~l~v~ 205 (216)
+.|.|.+.|.|.|.+.|+|++..+.... .... ..+.|.|.++..+|.|.|.|.+.|..|... ..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4799999999999999999998875432 2222 346899999999999999999999999864 45555543
No 90
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.59 E-value=1.7e-14 Score=81.57 Aligned_cols=69 Identities=22% Similarity=0.172 Sum_probs=56.4
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|++.|+|++..+... .........|.|.++..+|+|.|+|.+.|......+...+++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~ 70 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITL 70 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEE
Confidence 368999999999999999999887654 333345568999999999999999999999877666666554
No 91
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.58 E-value=5.4e-14 Score=85.03 Aligned_cols=82 Identities=34% Similarity=0.564 Sum_probs=64.0
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCC---eeeecCCeEEEecC-----CCCCCeEEEEEEEcC-C
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDR---MSVLPSRSLQLSDV-----RLEDGGEYVCEAENA-V 193 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~l~i~~~-----~~~d~g~y~C~~~n~-~ 193 (216)
..|....+.+|+++.|.|.+.+.|.|.+.|+|++..+.... .....++.+.|.++ ...|.|.|.|.+.|. .
T Consensus 4 ~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~ 83 (95)
T cd05722 4 SEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSL 83 (95)
T ss_pred ECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCcc
Confidence 34566777889999999999999999999999998875432 33334566777766 578999999999999 8
Q ss_pred cce-EEEEEEEE
Q psy573 194 GKI-SASATLTV 204 (216)
Q Consensus 194 ~~~-~~~~~l~v 204 (216)
|.. ++.+.|.|
T Consensus 84 G~~~s~~~~l~v 95 (95)
T cd05722 84 GSIVSRTARLTV 95 (95)
T ss_pred CcEEEeeeEEeC
Confidence 884 65666543
No 92
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.58 E-value=1.5e-14 Score=83.27 Aligned_cols=67 Identities=21% Similarity=0.307 Sum_probs=55.5
Q ss_pred EEEEEeCCCCCcEEEEeeCCccCCCCCeee-----e----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 137 VFECSVGGDAVLTVHWKRLGSAMPEDRMSV-----L----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 137 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~-----~----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
.|.|.+.|.|.|++.|+|++..+....... . ..+.|.|.++..+|+|.|+|.|.|..|..++++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 478999999999999999999886543211 1 235799999999999999999999999988887654
No 93
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.58 E-value=5e-14 Score=83.24 Aligned_cols=79 Identities=24% Similarity=0.477 Sum_probs=62.4
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 109 (216)
.+.+.+|+.+.|.|.+ .+.|.|.+.|++++..+... ..++... ..+.|.|.++..+|+|.|.|.+.|..|.. ..
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~ 80 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTET-EGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HA 80 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccC-CCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EE
Confidence 4678899999999998 89999999999999988532 2233332 23579999999999999999999998875 33
Q ss_pred eeEEE
Q psy573 110 DAVLR 114 (216)
Q Consensus 110 ~~~l~ 114 (216)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05894 81 SLFVK 85 (86)
T ss_pred EEEEE
Confidence 44443
No 94
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.58 E-value=2.3e-14 Score=82.26 Aligned_cols=72 Identities=31% Similarity=0.688 Sum_probs=58.5
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
|+.+.|.|.+ .+.|.+.+.|++++..+. ...++....++.|.|.+++.+|+|.|.|.+.|..|.. ..++.|.
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~--~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLT--NSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS 72 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEcc--cCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence 7889999998 788999999999998873 3345556666789999999999999999999988875 3344443
No 95
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.58 E-value=3.2e-14 Score=85.36 Aligned_cols=78 Identities=26% Similarity=0.374 Sum_probs=63.0
Q ss_pred ceeEeCCCcEEEEEEeCC-----CCCcEEEEeeCCccCCC---CCee-eecCCeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573 127 DTTVSAGSIIVFECSVGG-----DAVLTVHWKRLGSAMPE---DRMS-VLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS 197 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~-----~p~~~i~W~~~~~~~~~---~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 197 (216)
...+.+|+.+.|.|.+.+ .|.+.+.|+|++..+.. .... ...+..|.|.++..+|+|.|.|.+.|..|...
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~ 87 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMK 87 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence 456778999999999988 68889999999876432 1111 12457899999999999999999999999998
Q ss_pred EEEEEEE
Q psy573 198 ASATLTV 204 (216)
Q Consensus 198 ~~~~l~v 204 (216)
..++|.|
T Consensus 88 ~~~~L~v 94 (94)
T cd05756 88 VSISLTV 94 (94)
T ss_pred EEEEEEC
Confidence 8888764
No 96
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.57 E-value=2.9e-14 Score=83.03 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=55.6
Q ss_pred EEEEEeCCCCCcEEEEeeCCccCCCCCee-e--e--------cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 137 VFECSVGGDAVLTVHWKRLGSAMPEDRMS-V--L--------PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 137 ~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~--~--------~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
.|.|.+.|.|.|.++|+|++..+...... . . ..+.|.|.++...|+|.|+|.|.|..|..++++.+..
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~ 80 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF 80 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence 47899999999999999999988654321 1 1 1246999999999999999999999999988877653
No 97
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.57 E-value=3.7e-14 Score=82.84 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=60.9
Q ss_pred CcEEEEeeCCC-CCCCCeeEEeeCCEEeccc-cCceEEEe----cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573 40 DTALLECGPPR-GHPEPTLVWKKNGHPIDFE-NSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113 (216)
Q Consensus 40 ~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~-~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 113 (216)
+++.|.|.+.. ..+.+.+.|+++|..+... ...++... .++.|.|.+++..|+|.|+|.+.+..+.. .....|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence 46899999833 3457799999999999642 23344442 35689999999999999999999988775 566788
Q ss_pred EEeecc
Q psy573 114 RVLVKP 119 (216)
Q Consensus 114 ~v~~~p 119 (216)
.|..+|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 888765
No 98
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.57 E-value=4.4e-14 Score=84.66 Aligned_cols=76 Identities=30% Similarity=0.586 Sum_probs=59.9
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
.|..+.+.+|+.+.|.|.+ .+.|.+.+.||+++..+............+ .+|.|.+++.+|+|.|.|.+.|..|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 4556789999999999998 678899999999998774332222222222 379999999999999999999988765
No 99
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.57 E-value=4.5e-14 Score=81.80 Aligned_cols=75 Identities=36% Similarity=0.663 Sum_probs=59.1
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
|+.+.|.|.+ .+.|.|.+.|++++..+............++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 7899999998 889999999999999875433322334456789999999999999999999988765 34455544
No 100
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.56 E-value=5.9e-14 Score=80.81 Aligned_cols=72 Identities=26% Similarity=0.531 Sum_probs=59.1
Q ss_pred CCcEEEEEEeCCCCCcEEEEee-CCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKR-LGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
|+.+.|.|.+.+.|.|.+.|++ ++..+... +......+.|.|..+..+|.|.|+|.+.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 45544432 333445678999999999999999999999999888877754
No 101
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.56 E-value=1e-13 Score=84.27 Aligned_cols=84 Identities=27% Similarity=0.569 Sum_probs=62.9
Q ss_pred ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeC--CEEecc---ccCceEEEec---CcEEEEcccCCCCCceEEEEEE
Q psy573 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKN--GHPIDF---ENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~--~~~~~~---~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
..+.+..+.+|+.++|.|.+ .+.|.|.+.||+. +..+.. ....++.... ...|.|.+++.+|+|.|.|.+.
T Consensus 6 ~~~~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 84 (98)
T cd05870 6 IQLKNETTVENGAATLSCKA-EGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAA 84 (98)
T ss_pred EeeccEEEcCCCcEEEEEec-ccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEe
Confidence 45678899999999999998 7889999999994 333321 1123444332 3579999999999999999999
Q ss_pred cCCCCcccceeEEE
Q psy573 101 NVAGTRESTDAVLR 114 (216)
Q Consensus 101 ~~~~~~~~~~~~l~ 114 (216)
|..|.. ..++.|.
T Consensus 85 N~~G~~-~~~~~l~ 97 (98)
T cd05870 85 SRIGGH-QKSMYLD 97 (98)
T ss_pred ccCCcc-eeEEEEe
Confidence 988865 3345554
No 102
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.56 E-value=4.9e-14 Score=81.92 Aligned_cols=76 Identities=22% Similarity=0.434 Sum_probs=59.4
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceE-EEE
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKIS-ASA 200 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~-~~~ 200 (216)
..|.+..+..|+.+.|.|.+.|.|.| +|.|++++..+... .....+.|.|..+ .|.|.|.|.|.|..|... +.+
T Consensus 3 ~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 3 VEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 34667788999999999999999999 79999999877541 1123467888877 478999999999999743 344
Q ss_pred EE
Q psy573 201 TL 202 (216)
Q Consensus 201 ~l 202 (216)
.|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 43
No 103
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.56 E-value=3.2e-14 Score=81.56 Aligned_cols=70 Identities=30% Similarity=0.563 Sum_probs=54.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--Cc--EEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--GT--NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~~--~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
+.|.|.+ .+.|.|.+.|+|++..+... ..++.+.. ++ +|.|.++..+|+|.|+|.+.|..|.. .....|.
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD 74 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence 5799998 89999999999999988532 23444432 22 79999999999999999999998875 3344444
No 104
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.56 E-value=3.7e-14 Score=83.17 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=61.6
Q ss_pred EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcc
Q psy573 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE 107 (216)
Q Consensus 28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 107 (216)
++.+....+.+|++++|.|.+..+.+..++.||+++..+.. ...+..|.|.+++.+|+|.|+|.+.+..+...
T Consensus 3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~-------~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY-------SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccc-------cCCCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 45555667999999999999744456678999999986631 12346799999999999999999999887655
Q ss_pred cceeEEE
Q psy573 108 STDAVLR 114 (216)
Q Consensus 108 ~~~~~l~ 114 (216)
+..+.+.
T Consensus 76 s~~~~i~ 82 (83)
T cd05753 76 SEPVSIT 82 (83)
T ss_pred CCCEEEE
Confidence 5555554
No 105
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.56 E-value=9.6e-14 Score=84.20 Aligned_cols=88 Identities=20% Similarity=0.420 Sum_probs=64.2
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc---CceEEEec---CcEEEEcccCCCCCceEEEE
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN---SKRLRLVD---GTNLAIQDSRKTDDGRYQCV 98 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~---~~~~~~~~---~~~l~i~~~~~~d~g~y~C~ 98 (216)
|.|...+....+..|+.++|.|.+ .+.|.|.+.|++++..+.... ..++.... .+.|.|.+++.+|+|.|.|.
T Consensus 3 p~i~~~~~~~~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 3 PKITYVENQTAMELEEQITLTCEA-SGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred ceEEEccCceEEEcCCCEEEEEEe-eEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 555555555556668999999998 788999999999887663211 12232222 24799999999999999999
Q ss_pred EEcCCCCcccceeEEE
Q psy573 99 VKNVAGTRESTDAVLR 114 (216)
Q Consensus 99 ~~~~~~~~~~~~~~l~ 114 (216)
+.|..|.. ...+.|.
T Consensus 82 A~N~~G~~-~~~~~l~ 96 (97)
T cd05869 82 ASNTIGQD-SQSMYLE 96 (97)
T ss_pred EecCCCCe-eEEEEEE
Confidence 99998875 4445554
No 106
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.55 E-value=8e-14 Score=80.54 Aligned_cols=67 Identities=21% Similarity=0.497 Sum_probs=54.5
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
|.+.+.|+...+.+|+.++|.|.+ .+.|. ..+.||+++..+. ..+..|.|.++ .+|+|.|+|.+.+.
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~---------~~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLE---------TTTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEee---------ccCCeEEEeec-ccCCEEeEEECCCC
Confidence 345677888899999999999998 55554 4799999998772 13467999999 99999999999764
No 107
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.55 E-value=5.9e-14 Score=83.92 Aligned_cols=83 Identities=23% Similarity=0.396 Sum_probs=62.4
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEE-EecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLR-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
.|.+..+.+|+.+.|.|.+ .+.|.|.+.|++++..+......... ......|.|.++..+|.|.|.|.+.|..|.. .
T Consensus 6 ~p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~ 83 (90)
T cd04972 6 GPNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-N 83 (90)
T ss_pred CCcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-e
Confidence 3455668999999999999 78999999999999877432221111 1223579999999999999999999988875 3
Q ss_pred ceeEEE
Q psy573 109 TDAVLR 114 (216)
Q Consensus 109 ~~~~l~ 114 (216)
..+.|.
T Consensus 84 ~~~~L~ 89 (90)
T cd04972 84 VSVQVT 89 (90)
T ss_pred EEEEEe
Confidence 344443
No 108
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.55 E-value=9e-14 Score=80.22 Aligned_cols=69 Identities=39% Similarity=0.706 Sum_probs=56.0
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccC-CC---CCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAM-PE---DRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~-~~---~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|++++... +. .+.... ....|.|.++..+|+|.|.|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 468999999999999999988632 21 122222 3467999999999999999999999999988888876
No 109
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.55 E-value=4.7e-14 Score=84.28 Aligned_cols=73 Identities=38% Similarity=0.549 Sum_probs=56.6
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCC----ccCCCC--C-eee----------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLG----SAMPED--R-MSV----------LPSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~----~~~~~~--~-~~~----------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
|+.+.|.|.+.+.|.|.|.|+|++ ..+... . ... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999964 221111 0 000 12246999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy573 196 ISASATLTVQ 205 (216)
Q Consensus 196 ~~~~~~l~v~ 205 (216)
...++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9888888773
No 110
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.55 E-value=1.8e-13 Score=83.15 Aligned_cols=84 Identities=20% Similarity=0.262 Sum_probs=65.0
Q ss_pred cceEEeCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCC---CCeeeecC-------CeEEEecCCCC-CCeEE
Q psy573 118 KPYIIRGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVLPS-------RSLQLSDVRLE-DGGEY 185 (216)
Q Consensus 118 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~---~~~~~~~~-------~~l~i~~~~~~-d~g~y 185 (216)
+|.+ ..+....+..|+.+.|.|.+.+.|.| .+.|++++..+.. .++..... +.|.|.++..+ |.|.|
T Consensus 2 pp~i-~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y 80 (98)
T cd05758 2 PPII-TSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY 80 (98)
T ss_pred CCeE-cCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence 3444 33456678899999999999999999 6999999987653 23333221 37999999984 48999
Q ss_pred EEEEEcCCcceEEEEEE
Q psy573 186 VCEAENAVGKISASATL 202 (216)
Q Consensus 186 ~C~~~n~~~~~~~~~~l 202 (216)
.|.|.|..|.....+.|
T Consensus 81 ~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 81 NCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEcCCCcccEEEEe
Confidence 99999999998887765
No 111
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.55 E-value=9.8e-14 Score=80.76 Aligned_cols=71 Identities=28% Similarity=0.553 Sum_probs=56.5
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|.+..+.+|+.+.|.|.+ .+. .+.+.|+++|..+.. ..++... +..|.|.+++.+|+|.|.|.+.+..+..
T Consensus 1 ~~~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~--~~~~~~~-~~~L~I~~~~~~DsG~Y~C~a~n~~g~~ 71 (79)
T cd04973 1 VESYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGE--NNRTRIT-GEEVQIKDAVPRDSGLYACVTSSPSGSD 71 (79)
T ss_pred CCcEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCC--CceEEEe-CCEEEECCCChhhCEEEEEEEeCCCCcc
Confidence 456788999999999998 454 568999999988743 2344443 4689999999999999999999876653
No 112
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.54 E-value=1.2e-13 Score=82.04 Aligned_cols=78 Identities=23% Similarity=0.374 Sum_probs=61.2
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe----cC---cEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DG---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 111 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 111 (216)
|+.+.|.|.+ .+.|.+.+.|++++..+.... .++... .. +.|.|.++..+|+|.|+|.+.|..|.. ...+
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~-~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~ 77 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEM-SRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGII 77 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCC-CcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEE
Confidence 7899999998 788999999999998774322 233222 11 469999999999999999999999876 4567
Q ss_pred EEEEeecc
Q psy573 112 VLRVLVKP 119 (216)
Q Consensus 112 ~l~v~~~p 119 (216)
.|.|..+|
T Consensus 78 ~L~V~~~P 85 (88)
T cd05735 78 QLTVQEPP 85 (88)
T ss_pred EEEEeCCC
Confidence 78877655
No 113
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.54 E-value=5.5e-14 Score=81.69 Aligned_cols=71 Identities=27% Similarity=0.498 Sum_probs=57.3
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCC-Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
|+.+.|.|.+.+.|.|.+.|++++..+... +.... ....|.|.++..+|.|.|.|.+.|..|.......+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 678999999999999999999998777543 33222 225799999999999999999999999876655443
No 114
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.54 E-value=1e-13 Score=81.76 Aligned_cols=78 Identities=26% Similarity=0.508 Sum_probs=59.2
Q ss_pred CcEEEEeeCCCCCCCC--eeEEeeCCEEecccc-CceEE---E-ecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 40 DTALLECGPPRGHPEP--TLVWKKNGHPIDFEN-SKRLR---L-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 40 ~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~-~~~~~---~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
++++|.|.+ .+.|.+ .+.|++++..+.... ..++. . ...++|.|.+++..|+|.|+|.+.+..+.. ...+.
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~ 78 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASAT 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEE
Confidence 478999998 777776 689999998875322 22221 1 134689999999999999999999988875 55778
Q ss_pred EEEeecc
Q psy573 113 LRVLVKP 119 (216)
Q Consensus 113 l~v~~~p 119 (216)
|.|..+|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8887655
No 115
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.54 E-value=9.8e-14 Score=84.32 Aligned_cols=82 Identities=13% Similarity=0.195 Sum_probs=62.8
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-------ecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-------VDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
...+..|+.+.|.|.+ .+.|.|.+.|+|++.++.......... ...+.|.|.++..+|+|.|+|.+.|..|.
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 5678899999999999 889999999999999985322111110 11357999999999999999999998876
Q ss_pred cccceeEEEEe
Q psy573 106 RESTDAVLRVL 116 (216)
Q Consensus 106 ~~~~~~~l~v~ 116 (216)
. +.++.|.|.
T Consensus 91 ~-~~t~~l~V~ 100 (101)
T cd05859 91 K-SYTFALQIQ 100 (101)
T ss_pred E-EEEEEEEEE
Confidence 4 445666553
No 116
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.54 E-value=2.4e-13 Score=81.46 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=60.8
Q ss_pred EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEee-CCccCCC-CCeeeec----CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR-LGSAMPE-DRMSVLP----SRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~-~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.+.|....+..|+.+.|.|.+.|.|. .+.|++ ++..+.. .+..... .+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus 4 ~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 4 DIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred EEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 34456678999999999999998874 999997 4544432 3333222 247999999999999999999998654
Q ss_pred -eEEEEEEE
Q psy573 196 -ISASATLT 203 (216)
Q Consensus 196 -~~~~~~l~ 203 (216)
...++.|.
T Consensus 83 ~~~~sv~l~ 91 (92)
T cd04977 83 ESEATVNLK 91 (92)
T ss_pred cceeEEEEE
Confidence 66676665
No 117
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=1.3e-13 Score=82.40 Aligned_cols=77 Identities=32% Similarity=0.588 Sum_probs=61.0
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
|+.+.|.|.+ .+.|.+.+.|++++.... .....++....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAY 78 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEE
Confidence 7899999998 788999999999876431 122445666666789999999999999999999988875 44567
Q ss_pred EEEee
Q psy573 113 LRVLV 117 (216)
Q Consensus 113 l~v~~ 117 (216)
|.|..
T Consensus 79 l~V~~ 83 (90)
T cd05726 79 LEVTD 83 (90)
T ss_pred EEEee
Confidence 77764
No 118
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=1.5e-13 Score=80.66 Aligned_cols=72 Identities=25% Similarity=0.483 Sum_probs=57.1
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCcc---C--CCC----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSA---M--PED----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~---~--~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
|+.+.|.|.+.+.|.|.+.|+++... + ... +........|.|.++..+|+|.|.|.+.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 67899999999999999999997421 1 111 11222346799999999999999999999999998888876
Q ss_pred E
Q psy573 204 V 204 (216)
Q Consensus 204 v 204 (216)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 4
No 119
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.53 E-value=5.4e-14 Score=80.70 Aligned_cols=70 Identities=34% Similarity=0.569 Sum_probs=54.4
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc----EEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
+.|.|.+ .+.|.|.+.|++++..+... ..++....+. .|.|.++..+|+|.|+|.+.|..|.. +....|.
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~ 74 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTHN-TDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD 74 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCCC-CCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence 5799998 89999999999999987432 3344443322 69999999999999999999998876 3344544
No 120
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.53 E-value=1.8e-13 Score=82.06 Aligned_cols=85 Identities=21% Similarity=0.488 Sum_probs=60.8
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEec---CcEEEEcccCCCCCceEEEEEEcC
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVD---GTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
+.+.|....+..|+.+.|.|.+ .+.| +.+.|++ ++..+... ........ .+.|.|.+++.+|+|.|+|.+.|.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~-~G~p-~~i~W~~~~~~~~~~~-~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~ 79 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQV-IGEP-KDISWFSPNGEKLVTQ-QQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDA 79 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEe-EeeC-CeEEEECCCCCEeccC-CCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcC
Confidence 4456777889999999999998 6666 4999998 55555321 11122222 247999999999999999999998
Q ss_pred CCCcccceeEEE
Q psy573 103 AGTRESTDAVLR 114 (216)
Q Consensus 103 ~~~~~~~~~~l~ 114 (216)
.+.....++.|.
T Consensus 80 ~g~~~~~sv~l~ 91 (92)
T cd04977 80 KGTESEATVNLK 91 (92)
T ss_pred CCCcceeEEEEE
Confidence 665445555544
No 121
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.53 E-value=7.4e-14 Score=79.58 Aligned_cols=70 Identities=34% Similarity=0.619 Sum_probs=55.3
Q ss_pred cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
.+.|.|.+ .+.|.|.+.|++++..+.. ..++....++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~--~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~ 70 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIP--SDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI 70 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCC--CCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence 47899999 8899999999999987743 334455556679999999999999999999988875 3344443
No 122
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.53 E-value=1.4e-13 Score=79.72 Aligned_cols=72 Identities=26% Similarity=0.548 Sum_probs=54.7
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCCcc-cceeEEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRV 115 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v 115 (216)
++|.|.+ .+.|.|.+.|||++..+.... ..+.. ..++.|.|.++..+|+|.|.|.+.|..|... +..+.|.|
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v 74 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQ-GNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI 74 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCCC-ccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence 5799998 788999999999999874332 22333 3346899999999999999999999888643 33455554
No 123
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.52 E-value=1.1e-13 Score=81.83 Aligned_cols=78 Identities=28% Similarity=0.510 Sum_probs=58.9
Q ss_pred CcEEEEeeCCCCCCCC--eeEEeeCCEEeccccC-ce----EEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 40 DTALLECGPPRGHPEP--TLVWKKNGHPIDFENS-KR----LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 40 ~~~~l~C~~~~~~~~~--~~~W~~~~~~~~~~~~-~~----~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
+.+.|.|.+ .+.|.+ .+.|++++..+..... .. .....++.|.|.+++..|+|.|+|.+.|..+.. .....
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~ 78 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASAD 78 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEE
Confidence 478999998 677766 6799999998753321 11 112245689999999999999999999988765 55678
Q ss_pred EEEeecc
Q psy573 113 LRVLVKP 119 (216)
Q Consensus 113 l~v~~~p 119 (216)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8887765
No 124
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.52 E-value=2e-13 Score=82.74 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=64.5
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc---cCceEEEec---CcEEEEcccCCCCCceEEEE
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE---NSKRLRLVD---GTNLAIQDSRKTDDGRYQCV 98 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~ 98 (216)
|.+. .+.+..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...++.... .+.|.|.+++.+|+|.|.|.
T Consensus 3 P~i~-~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 3 PKIT-YLENQTAVELEQITLTCEA-EGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred ccce-ecCceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 4443 4567889999999999998 78899999999988655321 122333322 24799999999999999999
Q ss_pred EEcCCCCcccceeEEE
Q psy573 99 VKNVAGTRESTDAVLR 114 (216)
Q Consensus 99 ~~~~~~~~~~~~~~l~ 114 (216)
+.|..|.. ..++.|.
T Consensus 81 a~N~~G~~-~~s~~l~ 95 (96)
T cd05732 81 ASNRIGGD-QQSMYLE 95 (96)
T ss_pred EEeCCCCc-EEEEEEe
Confidence 99998875 4444443
No 125
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.52 E-value=2.3e-13 Score=80.58 Aligned_cols=79 Identities=29% Similarity=0.525 Sum_probs=60.2
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc-eEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK-RLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 111 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 111 (216)
..+.+|+.+.|.|.+ .+.|.+.+.||+++..+...... .+.. .....|.|.++..+|+|.|+|.+.|..|.. ...+
T Consensus 4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~ 81 (85)
T cd05857 4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTY 81 (85)
T ss_pred EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEE
Confidence 457889999999998 78899999999999987433221 1122 234579999999999999999999988865 4445
Q ss_pred EEE
Q psy573 112 VLR 114 (216)
Q Consensus 112 ~l~ 114 (216)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05857 82 HLD 84 (85)
T ss_pred EEE
Confidence 544
No 126
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.52 E-value=1.5e-13 Score=82.42 Aligned_cols=80 Identities=23% Similarity=0.341 Sum_probs=59.6
Q ss_pred cceEEecCCcEEEEeeCCCC-----CCCCeeEEeeCCEEeccc--cCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573 32 KSQRVAAGDTALLECGPPRG-----HPEPTLVWKKNGHPIDFE--NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~-----~~~~~~~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
....+.+|+.+.|.|.+ .+ .|.+.+.|||++..+... ...++.. .++.|.|.++..+|+|.|.|.+.|..+
T Consensus 7 ~~~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 7 KKSYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred eEEEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee-cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 35677899999999998 55 688899999998764322 2233322 457899999999999999999999887
Q ss_pred CcccceeEEE
Q psy573 105 TRESTDAVLR 114 (216)
Q Consensus 105 ~~~~~~~~l~ 114 (216)
.. ...+.|.
T Consensus 85 ~~-~~~~~L~ 93 (94)
T cd05756 85 CM-KVSISLT 93 (94)
T ss_pred cE-EEEEEEE
Confidence 65 3344443
No 127
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.51 E-value=4.1e-13 Score=81.61 Aligned_cols=79 Identities=23% Similarity=0.431 Sum_probs=61.6
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecC-------cEEEEcccCCCC-CceEEE
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTD-DGRYQC 97 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d-~g~y~C 97 (216)
++..+....+.+|+.+.|.|.+ .+.|.| .+.|++++..+......++.+... +.|.|.++..+| .|.|.|
T Consensus 4 ~i~~~~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C 82 (98)
T cd05758 4 IITSEATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNC 82 (98)
T ss_pred eEcCCCcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEE
Confidence 3345667788999999999999 788888 699999998875443344444322 379999999944 899999
Q ss_pred EEEcCCCCc
Q psy573 98 VVKNVAGTR 106 (216)
Q Consensus 98 ~~~~~~~~~ 106 (216)
.+.|..|..
T Consensus 83 ~A~N~~G~~ 91 (98)
T cd05758 83 TAWNSFGSG 91 (98)
T ss_pred EEEcCCCcc
Confidence 999988875
No 128
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.51 E-value=1.3e-13 Score=82.41 Aligned_cols=72 Identities=40% Similarity=0.581 Sum_probs=56.2
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCC----ccCCCCC---eeee----------cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLG----SAMPEDR---MSVL----------PSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~----~~~~~~~---~~~~----------~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
|+.+.|.|.+.+.|.|.|.|+++. ..+.... .... ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 678999999999999999999842 2221111 1111 1147999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy573 196 ISASATLTV 204 (216)
Q Consensus 196 ~~~~~~l~v 204 (216)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 998888876
No 129
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.51 E-value=1.6e-13 Score=79.95 Aligned_cols=69 Identities=35% Similarity=0.527 Sum_probs=53.6
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTV 204 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v 204 (216)
+.|.|.+.|.|.|.+.|++++... ...+......++|.|.++..+|.|.|.|.+.|..|.. ++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 479999999999999999975421 1223333456789999999999999999999999974 66666653
No 130
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.51 E-value=6.8e-14 Score=78.06 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=51.2
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
+.|.|.+ .+.|.|.+.|||+|..+... ...+.|.|.++..+|+|.|+|.+.|..|.. ...+.+.
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~ 64 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLE 64 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc-------CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEE
Confidence 4789999 89999999999999988421 234689999999999999999999988754 3334443
No 131
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.51 E-value=1.3e-13 Score=80.11 Aligned_cols=78 Identities=24% Similarity=0.508 Sum_probs=60.3
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
|...|.++.+.+|+++.|.|.+ .+.|.| .+.|++++..+... . ....+.|.|.++ .|+|.|.|.+.|..|.
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~----~-~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~ 72 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDP----P-APSPSVLNVPGL--NETSKFSCEAHNAKGV 72 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCC----C-CCCCCEEEEccc--cCCeEEEEEEEeccCc
Confidence 3456778899999999999998 899999 79999999987431 1 122457888887 4789999999998886
Q ss_pred cccceeE
Q psy573 106 RESTDAV 112 (216)
Q Consensus 106 ~~~~~~~ 112 (216)
..+...+
T Consensus 73 ~~s~~a~ 79 (81)
T cd05749 73 TTSRTGT 79 (81)
T ss_pred EEeeeEE
Confidence 5444333
No 132
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.51 E-value=1.5e-13 Score=77.86 Aligned_cols=62 Identities=35% Similarity=0.770 Sum_probs=52.5
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
+.|.|.+ .+.|.|.+.|++++..+. ...++....++.|.|.++..+|+|.|.|.+.|..|..
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 62 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVT--ESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA 62 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECC--CCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE
Confidence 5799998 788999999999998773 3344556667799999999999999999999988875
No 133
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.50 E-value=4.4e-13 Score=77.57 Aligned_cols=71 Identities=25% Similarity=0.526 Sum_probs=58.7
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCC---Ceeee-cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
+.|.|.+.|.|.|.+.|++++..+... +.... ....|.|.++..+|.|.|+|.+.|..|.....+.|.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 368999999999999999999876532 22222 235699999999999999999999999999999988863
No 134
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.49 E-value=3.3e-13 Score=77.66 Aligned_cols=70 Identities=34% Similarity=0.562 Sum_probs=53.4
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec--C--cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD--G--TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
+.|.|.+ .+.|.|.+.|+|++..+... ..++.... . ..|.|.+++.+|+|.|+|.+.|..|.. .....|.
T Consensus 1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~-~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 74 (75)
T cd05744 1 VRLECRV-SAIPPPQIFWKKNNEMLTYN-TDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD 74 (75)
T ss_pred CEEEEEE-eecCCCeEEEEECCEECCCC-CCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence 4799998 89999999999999887432 23343322 1 269999999999999999999998875 3344443
No 135
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.49 E-value=3.1e-13 Score=76.65 Aligned_cols=67 Identities=28% Similarity=0.635 Sum_probs=53.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 113 (216)
++|.|.+ .+.|.+.+.|++++..+. ..++....+..|.|.+++.+|+|.|.|.+.|..|.. .....|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~---~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l 67 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELP---KGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASL 67 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCC---CCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEE
Confidence 5799998 888999999999977652 234445567789999999999999999999988765 333444
No 136
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.48 E-value=4.5e-13 Score=77.38 Aligned_cols=66 Identities=20% Similarity=0.400 Sum_probs=55.3
Q ss_pred eEEeCCCceeEeCCCcEEEEEEeCCCCC-cEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 120 YIIRGPKDTTVSAGSIIVFECSVGGDAV-LTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
.+...|....+.+|+.+.|.|.+.+.|. ..+.|++++..+.. ....|.|.++ .+|+|.|.|.+.|.
T Consensus 2 vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 2 VVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred eEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC
Confidence 4566778889999999999999988875 46999999987632 3567999999 99999999999876
No 137
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.48 E-value=2.5e-13 Score=78.44 Aligned_cols=66 Identities=26% Similarity=0.551 Sum_probs=53.2
Q ss_pred EEEEEEeCC-CCCcEEEEeeCCccCCCCCe-e---ee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRM-S---VL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~-~---~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
+.|.|.+.+ .|.|.+.|++++..+..... . .. ....|.|.++..+|.|.|+|.+.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 89999999999987754321 1 11 2357999999999999999999999999777664
No 138
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=3e-13 Score=77.04 Aligned_cols=70 Identities=26% Similarity=0.584 Sum_probs=54.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
+.|.|.+ .+.|.|.+.|++++..+.. ........+..|.|.++..+|+|.|.|.+.|..|.. ..++.|.|
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSP--NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCC--CceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence 4789998 8999999999999886632 122223456789999999999999999999998875 44455544
No 139
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=8.4e-13 Score=75.97 Aligned_cols=71 Identities=35% Similarity=0.663 Sum_probs=55.5
Q ss_pred CCcEEEEeeCCCCCCCCeeEEee-CCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKK-NGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 113 (216)
|+.+.|.|.+ .+.|.+.+.|++ ++..+. ...+.....+++|.|.++..+|+|.|.|.+.|..|.. ...+.|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~--~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l 72 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLIS--NSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVEL 72 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEec--CCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEE
Confidence 7899999998 788999999997 565552 2334445566789999999999999999999988764 334444
No 140
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=5.8e-13 Score=78.58 Aligned_cols=72 Identities=22% Similarity=0.451 Sum_probs=56.8
Q ss_pred CCcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe-----e----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 133 GSIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM-----S----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 133 g~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~-----~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
|+.+.|.|.+.+. |.+.+.|.+++..+..... . ....+.|.|.+++.+|+|.|.|.+.|..|..+.+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999988 8889999987765432110 0 012357999999999999999999999999888887
Q ss_pred EEE
Q psy573 202 LTV 204 (216)
Q Consensus 202 l~v 204 (216)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 765
No 141
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.47 E-value=3e-13 Score=76.92 Aligned_cols=61 Identities=30% Similarity=0.486 Sum_probs=50.4
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
+.|.|.+ .+.|.|.+.|+|++..+... .+. ...+..|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~--~~~-~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEK--NRT-KKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CEE-EcCCCEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 4689998 88899999999999988433 222 3456789999999999999999999987764
No 142
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.47 E-value=4.9e-13 Score=79.52 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=58.9
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
+...+.+|+.+.|.|..+.+.|.+.+.|++++..+......+.... .++.|.|.+++.+|+|.|.|.+.+....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST 85 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence 3467899999999999888999999999999875432223333333 4789999999999999999999986543
No 143
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=4.7e-13 Score=78.01 Aligned_cols=72 Identities=32% Similarity=0.531 Sum_probs=54.8
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
++|.|.+ .+.|.|.+.|++++..... ....++....+++|.|.++..+|+|.|.|.+.|..|...+..+.|.
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799998 7899999999996432211 1234455556688999999999999999999999887656555554
No 144
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.46 E-value=1.8e-12 Score=76.67 Aligned_cols=78 Identities=29% Similarity=0.585 Sum_probs=63.5
Q ss_pred eCCCceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 123 RGPKDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
..|....+..|+.+.|.|.+.+ .|.+.+.|++++..++.. .....+.|.|.++..+|+|.|.|.+.|..|.....+.
T Consensus 6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~ 83 (85)
T cd05754 6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATAT 83 (85)
T ss_pred cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEE
Confidence 3455668889999999999864 688899999988765432 1224578999999999999999999999999888776
Q ss_pred E
Q psy573 202 L 202 (216)
Q Consensus 202 l 202 (216)
|
T Consensus 84 l 84 (85)
T cd05754 84 L 84 (85)
T ss_pred E
Confidence 5
No 145
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.46 E-value=1.3e-12 Score=77.98 Aligned_cols=83 Identities=27% Similarity=0.475 Sum_probs=61.6
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
|..+.+.+|+.+.|.|.+ .+ |.+.+.||+++..+.... ..++... ...|.|.+++.+|+|.|.|.+.+..+....
T Consensus 3 ~~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~ 79 (89)
T cd04979 3 EKVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVSPADAGVYTCQSVEHGFKQTL 79 (89)
T ss_pred ceEEEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEc-CCCEEEccCCHHHCEEEEEEEecCccceeE
Confidence 456788999999999998 44 778999999988764322 1233333 346999999999999999999877655445
Q ss_pred ceeEEEEe
Q psy573 109 TDAVLRVL 116 (216)
Q Consensus 109 ~~~~l~v~ 116 (216)
.+..|.|.
T Consensus 80 ~~~~l~V~ 87 (89)
T cd04979 80 ATYSLNVL 87 (89)
T ss_pred eEEEEEEe
Confidence 55566553
No 146
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.46 E-value=7.2e-13 Score=77.68 Aligned_cols=70 Identities=29% Similarity=0.577 Sum_probs=56.9
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+|....+.+|+++.|.|.+ . .+.+.+.|++++..+.... .++.+ .++.|.|.+++.+|+|.|.|.+.+..
T Consensus 2 ~P~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~-~r~~~-~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPES-AKYLL-YRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred CcceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCC-ceEEE-ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 5677889999999999997 3 4678999999999985432 34444 45679999999999999999998753
No 147
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.46 E-value=1e-12 Score=78.34 Aligned_cols=77 Identities=19% Similarity=0.265 Sum_probs=60.8
Q ss_pred eeEeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATL 202 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l 202 (216)
..+..|+.+.|.|...+. |.|.+.|+|++..+...+......+.|.|.++..+|+|.|+|.+.|..+.....+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 467789999999987432 567999999999887665544467889999999999999999999988765554444
Q ss_pred EE
Q psy573 203 TV 204 (216)
Q Consensus 203 ~v 204 (216)
.+
T Consensus 85 t~ 86 (92)
T cd05757 85 TI 86 (92)
T ss_pred EE
Confidence 33
No 148
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.45 E-value=4.2e-13 Score=78.94 Aligned_cols=77 Identities=23% Similarity=0.473 Sum_probs=57.7
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 113 (216)
.....|+.+.|.|.+ .+.|.+.+.|++++..+...... ........|.|.+++.+|+|.|.|.+.|..|.. ...+.|
T Consensus 4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v 80 (82)
T cd05856 4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKV 80 (82)
T ss_pred eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEE
Confidence 346679999999998 77888999999998876432211 112234579999999999999999999988764 334444
No 149
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.45 E-value=1.1e-12 Score=75.47 Aligned_cols=70 Identities=31% Similarity=0.679 Sum_probs=53.8
Q ss_pred cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEE
Q psy573 41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLR 114 (216)
Q Consensus 41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~ 114 (216)
.+.|.|.+ .+.|.|.+.|++++..+... .++... ....|.|.++..+|+|.|+|.+.|..|.. ..++.|.
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLS--GRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK 73 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCC--CeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence 47899998 89999999999999987332 233332 24579999999999999999999988864 3344443
No 150
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=1.1e-12 Score=75.93 Aligned_cols=70 Identities=31% Similarity=0.642 Sum_probs=53.5
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCC----CCCceEEEEEEcCCCCcccceeE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
+.|.|.+ .+.|.|.+.|++++..+......++.. ..++.|.|.++.. +|+|.|.|.+.|..|...+..+.
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~ 75 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIH 75 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccE
Confidence 4789998 889999999999999875433334443 3467899998754 78999999999998876554433
No 151
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.45 E-value=3.8e-12 Score=78.68 Aligned_cols=79 Identities=28% Similarity=0.473 Sum_probs=60.2
Q ss_pred cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-------cCcEEEEcccC-CCCCceEEEEEEcCCCCcccc
Q psy573 38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-------DGTNLAIQDSR-KTDDGRYQCVVKNVAGTREST 109 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~ 109 (216)
.|..+.|.|.+ .+.|.+.+.|++++..+... ..++... ..+.|.|.++. .+|.|.|.|.+.|..|.. ..
T Consensus 22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~-~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~ 98 (109)
T cd05773 22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLG-NPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SL 98 (109)
T ss_pred CCCEEEEEEEC-cccCCCEEEEEECCEECCCC-CCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cE
Confidence 46789999999 78999999999999887432 2232211 13579999997 699999999999999875 55
Q ss_pred eeEEEEeecc
Q psy573 110 DAVLRVLVKP 119 (216)
Q Consensus 110 ~~~l~v~~~p 119 (216)
.+.|.+...|
T Consensus 99 ~i~L~~~~~p 108 (109)
T cd05773 99 DIQLVSTSRP 108 (109)
T ss_pred EEEEEecCCC
Confidence 6777776554
No 152
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.45 E-value=2.6e-12 Score=76.62 Aligned_cols=81 Identities=23% Similarity=0.367 Sum_probs=61.6
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCc-ceEEE
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISAS 199 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~-~~~~~ 199 (216)
+....+..|+.+.|.|.+.+ |.+.+.|++++..+... .........|.|.++..+|+|.|.|.+.+..+ ....+
T Consensus 3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 34457788999999999976 88899999998776543 12222345699999999999999999987654 46667
Q ss_pred EEEEEEe
Q psy573 200 ATLTVQS 206 (216)
Q Consensus 200 ~~l~v~~ 206 (216)
..|.|.+
T Consensus 82 ~~l~V~~ 88 (89)
T cd04979 82 YSLNVLE 88 (89)
T ss_pred EEEEEec
Confidence 7777653
No 153
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.44 E-value=3.9e-12 Score=76.19 Aligned_cols=79 Identities=25% Similarity=0.462 Sum_probs=57.6
Q ss_pred ceEEeCCCceeEe---CCCcEEEEEEeCCCCCcEEEEeeCCccCCCC--CeeeecCCeEEEecCC-CCCCeEEEEEEEcC
Q psy573 119 PYIIRGPKDTTVS---AGSIIVFECSVGGDAVLTVHWKRLGSAMPED--RMSVLPSRSLQLSDVR-LEDGGEYVCEAENA 192 (216)
Q Consensus 119 p~~~~~~~~~~~~---~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~g~y~C~~~n~ 192 (216)
|.+...+....+. .|+.+.|.|.+.+.|.|.+.|++++..+... .......+.|.|.++. .+|.|.|+|.+.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~ 81 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNI 81 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcC
Confidence 3344444544433 3467999999999999999999999877321 1222345678898876 48999999999999
Q ss_pred CcceE
Q psy573 193 VGKIS 197 (216)
Q Consensus 193 ~~~~~ 197 (216)
.|...
T Consensus 82 ~G~~~ 86 (91)
T cd04967 82 VGTVL 86 (91)
T ss_pred CCEEE
Confidence 99744
No 154
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.44 E-value=3.6e-12 Score=74.76 Aligned_cols=68 Identities=22% Similarity=0.387 Sum_probs=55.9
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
|....+..|+++.|.|.+.+ +.+.+.|++++..+... .......+.|.|.+++.+|+|.|+|.+.+..
T Consensus 3 P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 56678899999999999864 67899999999988654 2233456779999999999999999998763
No 155
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=5.9e-13 Score=75.18 Aligned_cols=60 Identities=27% Similarity=0.473 Sum_probs=49.6
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
+.|.|.+ .+.|.|.+.||+++..+... .+ ...+..|.|.++..+|+|.|+|.+.|..|..
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~--~~--~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~ 60 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVLN--HT--FKRGVHLTIYEVTEKDAGNYTVVLTNPITKE 60 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCC--CE--EccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence 4689998 89999999999999988432 22 2345689999999999999999999998754
No 156
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.44 E-value=3e-12 Score=75.33 Aligned_cols=73 Identities=26% Similarity=0.515 Sum_probs=55.8
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCC-----Ceeee---cCCeEEEecCCCCCCeEEEEEEEcCCc--ceEEEEEE
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPED-----RMSVL---PSRSLQLSDVRLEDGGEYVCEAENAVG--KISASATL 202 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~-----~~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~--~~~~~~~l 202 (216)
|+++.|.|.+.+.|.+.+.|++.++..... ..... ....|.|.+++.+|+|.|.|.+.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 788999999999999999999876543211 11111 235799999999999999999999876 57777777
Q ss_pred EEE
Q psy573 203 TVQ 205 (216)
Q Consensus 203 ~v~ 205 (216)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 764
No 157
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.43 E-value=1.5e-12 Score=75.34 Aligned_cols=62 Identities=29% Similarity=0.567 Sum_probs=49.0
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCC---Ceee-ecCCeEEEecCCC----CCCeEEEEEEEcCCcceE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPED---RMSV-LPSRSLQLSDVRL----EDGGEYVCEAENAVGKIS 197 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~---~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~~~ 197 (216)
+.|.|.+.|.|.|++.|++++..+... +... ...+.|.|..+.. +|+|.|.|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 468999999999999999999876422 2222 2457899988754 689999999999999743
No 158
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.43 E-value=1.9e-12 Score=77.28 Aligned_cols=75 Identities=20% Similarity=0.376 Sum_probs=54.0
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCC----EEeccccCceEEE----------ecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNG----HPIDFENSKRLRL----------VDGTNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~----~~~~~~~~~~~~~----------~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
|+.++|.|.+ .+.|.|.+.|++++ ..+.......... .....|.|.+++.+|+|.|.|.+.|..|
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 7889999998 88999999999963 2221111111111 1124799999999999999999999988
Q ss_pred CcccceeEEEE
Q psy573 105 TRESTDAVLRV 115 (216)
Q Consensus 105 ~~~~~~~~l~v 115 (216)
.. ..++.|.|
T Consensus 80 ~~-~~sa~L~V 89 (90)
T cd04974 80 PS-HHSAWLTV 89 (90)
T ss_pred cc-cCCEEEEe
Confidence 75 44566665
No 159
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.43 E-value=1.5e-12 Score=77.77 Aligned_cols=75 Identities=23% Similarity=0.418 Sum_probs=53.9
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeC----CEEeccccCceEEEe----------cCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKN----GHPIDFENSKRLRLV----------DGTNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~----~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
|+.+.|.|.+ .+.|.|.+.|+++ +..+........... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 7899999999 8889999999984 333321111111111 114799999999999999999999988
Q ss_pred CcccceeEEEE
Q psy573 105 TRESTDAVLRV 115 (216)
Q Consensus 105 ~~~~~~~~l~v 115 (216)
.. ..+..|.|
T Consensus 80 ~~-~~~a~L~V 89 (90)
T cd05858 80 IS-HHSAWLTV 89 (90)
T ss_pred cc-cceEEEEE
Confidence 75 44566655
No 160
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.43 E-value=2.7e-12 Score=74.14 Aligned_cols=63 Identities=32% Similarity=0.531 Sum_probs=48.3
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCC---CCCeee-ecCCeEEEecCCC----CCCeEEEEEEEcCCcceEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMP---EDRMSV-LPSRSLQLSDVRL----EDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~---~~~~~~-~~~~~l~i~~~~~----~d~g~y~C~~~n~~~~~~~ 198 (216)
+.|.|.+.|.|.|.+.|++++..+. ..+... ...++|.|..+.. +|.|.|.|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 3689999999999999999998653 223333 2457899987642 4699999999999997443
No 161
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.43 E-value=2.4e-12 Score=74.41 Aligned_cols=69 Identities=25% Similarity=0.621 Sum_probs=51.7
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCC----CCCceEEEEEEcCCCCccccee
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRK----TDDGRYQCVVKNVAGTRESTDA 111 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~ 111 (216)
+.|.|.+ .+.|.|.+.|++++..+........... .+++|.|..+.. .|+|.|.|.+.|..|...+..+
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI 74 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence 4789998 8999999999999988743333334333 467888887764 3789999999998887654433
No 162
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.42 E-value=3.2e-12 Score=76.69 Aligned_cols=76 Identities=25% Similarity=0.514 Sum_probs=56.4
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC---------CCCCeeee----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM---------PEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~---------~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
.+..+.+|+++.|.|.+.+.|.+.+.|++.+..+ ...++... ....|.|.++..+|.|.|+|.+...
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~ 84 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM 84 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee
Confidence 5668899999999999999999999999877532 12232222 1357999999999999999999872
Q ss_pred CcceEEEEEE
Q psy573 193 VGKISASATL 202 (216)
Q Consensus 193 ~~~~~~~~~l 202 (216)
-...+...|
T Consensus 85 -~~~~~~~~~ 93 (95)
T cd05882 85 -PVRTAKATV 93 (95)
T ss_pred -ccccEEEEE
Confidence 234444444
No 163
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.42 E-value=2.3e-12 Score=74.42 Aligned_cols=69 Identities=30% Similarity=0.620 Sum_probs=52.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccC----CCCCceEEEEEEcCCCCccccee
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSR----KTDDGRYQCVVKNVAGTRESTDA 111 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~~~~~~~ 111 (216)
+.|.|.+ .+.|.|.+.|++++..+......++.. ..++.|.|.++. .+|+|.|.|.+.|..|...+..+
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~ 74 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKI 74 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEE
Confidence 4689999 899999999999998764334444444 356789998764 24699999999999887655443
No 164
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.42 E-value=2.7e-12 Score=74.13 Aligned_cols=63 Identities=24% Similarity=0.451 Sum_probs=48.5
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCC---CCeeee-cCCeEEEecCCCC----CCeEEEEEEEcCCcceEE
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPE---DRMSVL-PSRSLQLSDVRLE----DGGEYVCEAENAVGKISA 198 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~---~~~~~~-~~~~l~i~~~~~~----d~g~y~C~~~n~~~~~~~ 198 (216)
+.|.|.+.|.|.|++.|++++..+.. ...... .+++|.|..+..+ |.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 46899999999999999999887632 222222 4578888877643 789999999999998544
No 165
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.42 E-value=2.7e-12 Score=76.86 Aligned_cols=82 Identities=39% Similarity=0.643 Sum_probs=59.9
Q ss_pred cceEecccceEEec---CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccC-CCCCceEEEEEE
Q psy573 25 EEFRVQPKSQRVAA---GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSR-KTDDGRYQCVVK 100 (216)
Q Consensus 25 ~~~~~~~~~~~~~~---G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~ 100 (216)
|.|...|....+.+ |..+.|.|.+ .+.|.+.+.|++++..+......++.. .++.|.|.++. .+|+|.|+|.+.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~-~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSL-VGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEE-ECCEEEEecCCccCCCEEEEEEEE
Confidence 34555566655444 4679999998 778999999999998874333333433 35679998876 489999999999
Q ss_pred cCCCCccc
Q psy573 101 NVAGTRES 108 (216)
Q Consensus 101 ~~~~~~~~ 108 (216)
|..|...+
T Consensus 80 N~~G~~~S 87 (91)
T cd04967 80 NIVGTVLS 87 (91)
T ss_pred cCCCEEEe
Confidence 98876533
No 166
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.42 E-value=2.5e-12 Score=75.40 Aligned_cols=74 Identities=26% Similarity=0.532 Sum_probs=53.8
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCE---Eecccc---CceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGH---PIDFEN---SKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~---~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
|+.+.|.|.+ .+.|.+.+.||+++. .+.... ..++.....+.|.|.++..+|+|.|.|.+.|..|.. ...+.
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~ 78 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFP 78 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEE
Confidence 7899999998 888999999999732 111111 122333445689999999999999999999988864 33444
Q ss_pred EE
Q psy573 113 LR 114 (216)
Q Consensus 113 l~ 114 (216)
|.
T Consensus 79 l~ 80 (81)
T cd05765 79 LS 80 (81)
T ss_pred Ee
Confidence 43
No 167
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.41 E-value=1.1e-12 Score=74.26 Aligned_cols=60 Identities=28% Similarity=0.474 Sum_probs=48.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
+.|.|.+ .+.|.|.+.|++++..+... ..++. ..+.+|.|.++..+|+|.|+|.+.+...
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~-~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAEK-CSRYH-VDGYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCCC-CcEEE-eCCCEEEECcCCHHHCEEEEEEEEcccc
Confidence 3689998 89999999999999887432 23333 3456899999999999999999998643
No 168
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.41 E-value=1.2e-12 Score=74.69 Aligned_cols=70 Identities=29% Similarity=0.514 Sum_probs=52.6
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
+.|.|.+ .+.|.|.+.|++++..+... .......+..|.|.++..+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~--~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V 70 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPAD--RTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV 70 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCCC--ceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence 4789998 88899999999998876321 11122335689999999999999999999988764 44455544
No 169
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.41 E-value=2.2e-12 Score=74.41 Aligned_cols=72 Identities=35% Similarity=0.689 Sum_probs=53.4
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEe-ccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPI-DFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~-~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
+.|.|.+ .+.|.|.+.|++++... ......++... .++.|.|.+++.+|+|.|.|.+.|..|.. ...+.|.|
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V 74 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV 74 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence 4689998 89999999999987643 12222333332 35689999999999999999999988764 44555554
No 170
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.41 E-value=3.9e-12 Score=73.57 Aligned_cols=73 Identities=41% Similarity=0.643 Sum_probs=56.2
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 116 (216)
+.|.|.+ .+.|.+.+.|++++..+......++.... +..|.|.++..+|.|.|+|.+.|..|.. ...+.|.|.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 3689998 78899999999999987544434444443 3479999999999999999999988875 445566553
No 171
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.41 E-value=1.9e-12 Score=75.20 Aligned_cols=65 Identities=28% Similarity=0.548 Sum_probs=52.3
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|+.+.|.|.+ .+.|.|.+.|++++..+... .++... ..+.|.|.++..+|+|.|.|.+.|..|..
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~--~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDS--ARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCCC--CCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence 7899999998 78899999999998876332 233222 23579999999999999999999988764
No 172
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.39 E-value=2.1e-12 Score=74.63 Aligned_cols=66 Identities=27% Similarity=0.518 Sum_probs=51.5
Q ss_pred EEEEEEeCC-CCCcEEEEeeCCccCCCCC-----eeee---cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 136 IVFECSVGG-DAVLTVHWKRLGSAMPEDR-----MSVL---PSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~-----~~~~---~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
+.|.|.+.+ .|.+.+.|++++..+.... .... ..+.|.|.++..+|+|.|.|.+.|..|....+++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999864 6778999999998775321 1111 2357999999999999999999999999887765
No 173
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.39 E-value=4.5e-12 Score=71.54 Aligned_cols=62 Identities=24% Similarity=0.493 Sum_probs=48.8
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|+.+.|.|.+ .+.|.|.+.|++++..+.. ..+.. .....|.|.++. |+|.|+|.+.|..|..
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~--~~~~~-~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~ 62 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTK--EDEMP-VGRNVLELTNIY--ESANYTCVAISSLGMI 62 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCC--cccee-cCccEEEEeccc--cCeeEEEEEEeCCCEE
Confidence 7889999999 8999999999999987632 22222 234578898874 7899999999988764
No 174
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=2.7e-12 Score=75.24 Aligned_cols=74 Identities=23% Similarity=0.331 Sum_probs=56.9
Q ss_pred CceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEE
Q psy573 126 KDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLT 203 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~ 203 (216)
....+.+|+++.|.|.+. +.+.+.+.|++++..+... .....|.|.+++.+|+|.|+|.+.+..+. .++.+.|.
T Consensus 7 p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 7 PSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred CcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 344788999999999985 4566789999999765421 23467999999999999999999998875 33344443
No 175
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.38 E-value=1.1e-11 Score=73.30 Aligned_cols=76 Identities=28% Similarity=0.504 Sum_probs=60.6
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCee-ee----cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMS-VL----PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~-~~----~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
.+..|+.+.|.|.+.+.|.+.+.|++++..+...... .. ....|.|.++..+|.|.|.|.+.|..|..+.++.|.
T Consensus 5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~ 84 (85)
T cd05729 5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD 84 (85)
T ss_pred EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence 4567999999999999999999999998776533211 11 124688999999999999999999999988887765
Q ss_pred E
Q psy573 204 V 204 (216)
Q Consensus 204 v 204 (216)
|
T Consensus 85 v 85 (85)
T cd05729 85 V 85 (85)
T ss_pred C
Confidence 3
No 176
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.38 E-value=4.1e-12 Score=73.17 Aligned_cols=62 Identities=23% Similarity=0.420 Sum_probs=48.3
Q ss_pred EEeeCCCCCCCCeeEEeeCCEEeccccCceEE--Ee----cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 44 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLR--LV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 44 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~--~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|.|.+ .+.|.|.+.|||++..+......... .. ..+.|.|.++...|+|.|+|.+.|..|..
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc
Confidence 67888 89999999999999988533221111 11 13479999999999999999999998865
No 177
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.37 E-value=5.5e-12 Score=73.46 Aligned_cols=62 Identities=26% Similarity=0.471 Sum_probs=48.4
Q ss_pred EEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe--------cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 44 LECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV--------DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 44 l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
|.|.+ .+.|.|.+.||++|..+........... ..+.|.|.++..+|+|.|+|.+.|..|..
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD 72 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence 68888 8999999999999998854332111111 13469999999999999999999998875
No 178
>KOG3515|consensus
Probab=99.37 E-value=4.6e-12 Score=99.55 Aligned_cols=169 Identities=18% Similarity=0.248 Sum_probs=124.2
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEE
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVL 113 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l 113 (216)
..+..|+.|.|.|.+..+.|...+.||+.++... .+.....+..|......++.-+.|.|.+.+..+........+
T Consensus 17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l 92 (741)
T KOG3515|consen 17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH----GRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL 92 (741)
T ss_pred hhhccCCcceeeeecCCCCCCcceEEEecCcccc----cccccccCCceeeecchhhhhhhhhhhhcccccCceecceee
Confidence 3788999999999996677788999999988763 444445566788889888888999999999877776777888
Q ss_pred EEeecceEEeCCCceeEeCCCcEEEEEEe--CCCCCcEEEEeeCCccCCCC------------CeeeecCCeEEEecCCC
Q psy573 114 RVLVKPYIIRGPKDTTVSAGSIIVFECSV--GGDAVLTVHWKRLGSAMPED------------RMSVLPSRSLQLSDVRL 179 (216)
Q Consensus 114 ~v~~~p~~~~~~~~~~~~~g~~~~l~C~~--~~~p~~~i~W~~~~~~~~~~------------~~~~~~~~~l~i~~~~~ 179 (216)
.+.++|.............+..+.+.|.+ .+.|.+.+.|..+....... .......+.+.+...+.
T Consensus 93 ~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rk 172 (741)
T KOG3515|consen 93 DVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRK 172 (741)
T ss_pred ccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEe
Confidence 88888866655555566778889999965 44567789999876532110 00012235578888889
Q ss_pred CCCeEEEEEEEcC---CcceEEEEEEEEEe
Q psy573 180 EDGGEYVCEAENA---VGKISASATLTVQS 206 (216)
Q Consensus 180 ~d~g~y~C~~~n~---~~~~~~~~~l~v~~ 206 (216)
.++|.|+|.+.|. .+...+...+.+..
T Consensus 173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~ 202 (741)
T KOG3515|consen 173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEA 202 (741)
T ss_pred cCCceeEcccccccCccccccceeEeeccc
Confidence 9999999999984 34444444444443
No 179
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.36 E-value=1.6e-11 Score=73.90 Aligned_cols=79 Identities=27% Similarity=0.487 Sum_probs=57.9
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCC--------c-cCCCCCeeee----cCCeEEEecCCCCCCeEEEEEEEc
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLG--------S-AMPEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAEN 191 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~--------~-~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n 191 (216)
+.+..+.+|+++.|.|.+.+.|.+.+.|++.+ . .....+.... ...+|.|.+++.+|+|.|.|.+.+
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t 83 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT 83 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence 35678899999999999999999999998622 1 1223343322 235799999999999999999988
Q ss_pred CCcceEEEEEEEE
Q psy573 192 AVGKISASATLTV 204 (216)
Q Consensus 192 ~~~~~~~~~~l~v 204 (216)
..+ .+.+..|.|
T Consensus 84 ~~~-~~~~~~l~v 95 (95)
T cd07701 84 MPV-KTSKAYLTV 95 (95)
T ss_pred ecC-ccEEEEEEC
Confidence 533 355555543
No 180
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.36 E-value=2.5e-11 Score=72.83 Aligned_cols=80 Identities=19% Similarity=0.294 Sum_probs=62.1
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCc-EEEEeeCCccCCC---CCeeee-------cCCeEEEecCCCCC-CeEEEEEEE
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVL-TVHWKRLGSAMPE---DRMSVL-------PSRSLQLSDVRLED-GGEYVCEAE 190 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~-~i~W~~~~~~~~~---~~~~~~-------~~~~l~i~~~~~~d-~g~y~C~~~ 190 (216)
.......+.+|+.+.|.|.+.+.|.| .|.|.+++..+.. .++.+. ..+.|.|.++...| .|.|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~ 85 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW 85 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence 55566788899999999999888876 5788887766532 233332 22579999998766 799999999
Q ss_pred cCCcceEEEEEE
Q psy573 191 NAVGKISASATL 202 (216)
Q Consensus 191 n~~~~~~~~~~l 202 (216)
|..|+....+.|
T Consensus 86 N~~G~d~~~i~L 97 (98)
T cd05898 86 NSFGSGTAIIQL 97 (98)
T ss_pred eCCccceEEEEe
Confidence 999998887765
No 181
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.36 E-value=5.9e-12 Score=74.76 Aligned_cols=73 Identities=19% Similarity=0.367 Sum_probs=60.8
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCc-eEEEEEEcCCC
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDG-RYQCVVKNVAG 104 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~ 104 (216)
.+.+.+.+|+.+.|.|..+.+.|.+.+.|++++.... ....++....++.|.|.++..+|+| .|.|.+.+...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i-~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHI-TQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccc-cccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 3567899999999999866899999999998765532 3456777777899999999999999 79999998653
No 182
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.36 E-value=1e-11 Score=74.00 Aligned_cols=69 Identities=20% Similarity=0.408 Sum_probs=54.1
Q ss_pred eEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 34 QRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
..+.+|....|.|..... .|.+.+.|||++..+... ... ...++.|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~--~~~-~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGD--RKR-FVKGSKLLIQNVTEEDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCC--ccE-EecCCEEEEeeCChhhCEEEEEEEEecCCC
Confidence 567899999999986322 257799999999988432 222 226778999999999999999999987654
No 183
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.35 E-value=1e-11 Score=73.39 Aligned_cols=72 Identities=29% Similarity=0.487 Sum_probs=56.5
Q ss_pred cccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
.|....+.+|+.++|.|.+..+.|.+.+.|++++..+.. . ....++.|.|.+++.+|+|.|.|.+.|..+..
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~----~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPS----R-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCC----c-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence 345678899999999999844467889999998865421 1 12235689999999999999999999987764
No 184
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.34 E-value=1.9e-11 Score=67.77 Aligned_cols=63 Identities=35% Similarity=0.711 Sum_probs=51.8
Q ss_pred CCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 132 AGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
+|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++...|.|.|.|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988888899999999887763323333556899999999999999999998754
No 185
>PHA03376 BARF1; Provisional
Probab=99.33 E-value=6.8e-11 Score=77.17 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=79.8
Q ss_pred ceEEecCCcEEEEeeCC--CCCCCCeeEEeeCC----EEe-----------ccccCceEEE---ecCcEEEEcccCCCCC
Q psy573 33 SQRVAAGDTALLECGPP--RGHPEPTLVWKKNG----HPI-----------DFENSKRLRL---VDGTNLAIQDSRKTDD 92 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~--~~~~~~~~~W~~~~----~~~-----------~~~~~~~~~~---~~~~~l~i~~~~~~d~ 92 (216)
.+.+..|+.+.|+|... ...+...+.|+|.+ ..+ +..+.++..+ .++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 56788999999999762 12345689999942 111 1233444444 2345799999999999
Q ss_pred ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc
Q psy573 93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA 158 (216)
Q Consensus 93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~ 158 (216)
|.|+|.+....... .....|.+..+-.+.+.........-+...+.|.+.++|.|.+.|.-+.+.
T Consensus 100 GtY~C~fQkge~~~-~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~~ 164 (221)
T PHA03376 100 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV 164 (221)
T ss_pred ceEEEEEEcCCCce-eeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccCC
Confidence 99999998755332 111223322222233322222233356788999999999999999876553
No 186
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.33 E-value=1.7e-11 Score=73.57 Aligned_cols=71 Identities=25% Similarity=0.584 Sum_probs=53.5
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
..++.+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ....++.+. .+..|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 4 TQDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred cccEEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 346789999999999998 7788899999997753311 112333322 13589999999999999999998
Q ss_pred cC
Q psy573 101 NV 102 (216)
Q Consensus 101 ~~ 102 (216)
..
T Consensus 83 t~ 84 (95)
T cd05882 83 TM 84 (95)
T ss_pred ee
Confidence 63
No 187
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.30 E-value=3.2e-11 Score=72.54 Aligned_cols=72 Identities=24% Similarity=0.452 Sum_probs=52.9
Q ss_pred ccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573 31 PKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 31 ~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
+.++.+.+|+++.|.|.+ .+.|.+.+.||+.+..+. .....++... ...+|+|.+++.+|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence 456789999999999998 777889999997432210 0122344332 23589999999999999999998
Q ss_pred cCC
Q psy573 101 NVA 103 (216)
Q Consensus 101 ~~~ 103 (216)
...
T Consensus 83 t~~ 85 (95)
T cd07701 83 TMP 85 (95)
T ss_pred eec
Confidence 743
No 188
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.30 E-value=2.5e-11 Score=72.26 Aligned_cols=71 Identities=21% Similarity=0.308 Sum_probs=56.5
Q ss_pred CceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccC--C-CCCeeee-cCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573 126 KDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAM--P-EDRMSVL-PSRSLQLSDVRLEDGGEYVCEAENAVGKI 196 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~--~-~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~n~~~~~ 196 (216)
....+.+|+.+.|.|.. .+.|.+.+.|++++... . ..+.... .++.|.+.+++.+|.|.|.|.|.|.....
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 34578899999999976 77799999999998653 2 2333333 46899999999999999999999987554
No 189
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.30 E-value=2.1e-11 Score=70.48 Aligned_cols=65 Identities=26% Similarity=0.585 Sum_probs=48.5
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEecccc--CceEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFEN--SKRLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~--~~~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
+.|.|.+..+.|.+.+.||++++.+.... ..++... ..+.|.|.++..+|+|.|.|.+.|..|..
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND 70 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence 47999974456888999999998875332 1222222 23579999999999999999999987754
No 190
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.28 E-value=4.7e-11 Score=70.20 Aligned_cols=76 Identities=17% Similarity=0.372 Sum_probs=51.7
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCc--eEEEe---cCcEEEEcccCCCCCceEEEEEEcCCCC-cccceeE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSK--RLRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGT-RESTDAV 112 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~--~~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~-~~~~~~~ 112 (216)
|++++|.|.+ .+.|.+.+.|++.++........ +.... ....|+|.+++.+|+|.|.|.+.+.... ....++.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999998 67788999999876543111111 11111 1357999999999999999999986542 2244445
Q ss_pred EEE
Q psy573 113 LRV 115 (216)
Q Consensus 113 l~v 115 (216)
+.|
T Consensus 80 i~V 82 (84)
T cd05861 80 ITV 82 (84)
T ss_pred EEE
Confidence 544
No 191
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.28 E-value=2.6e-11 Score=69.94 Aligned_cols=64 Identities=28% Similarity=0.663 Sum_probs=49.2
Q ss_pred EEEEeeCCCC-CCCCeeEEeeCCEEeccccCce-EEEe---cCcEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 42 ALLECGPPRG-HPEPTLVWKKNGHPIDFENSKR-LRLV---DGTNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 42 ~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
+.|.|.+ .+ .|.+.+.|++++..+....... +... ....|.|.++..+|+|.|.|.+.|..|..
T Consensus 1 ~~l~C~~-~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 1 LVLKCEA-TSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND 69 (75)
T ss_pred CEEEEEc-cCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence 4689999 56 8999999999998875433222 1111 23579999999999999999999988764
No 192
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.28 E-value=6.1e-11 Score=65.67 Aligned_cols=62 Identities=32% Similarity=0.711 Sum_probs=49.7
Q ss_pred cCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 38 AGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+|+.++|.|.+ .+.+.+.+.|++++..+. ........+..|.|.++...|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLP---ESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECC---CCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 58899999997 677888999999988774 122223445689999999999999999998754
No 193
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.27 E-value=2.5e-11 Score=70.88 Aligned_cols=72 Identities=35% Similarity=0.654 Sum_probs=54.9
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
...+.+|+.++|.|.+ .+.|...+.|++++..+... ...+.+.++..+|.|.|.|.+.+..+...+..+.
T Consensus 8 ~~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~~~---------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~ 77 (80)
T PF13895_consen 8 PQSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPINSS---------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN 77 (80)
T ss_dssp SSEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEEEE---------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred ceEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeeeee---------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence 3678999999999998 57777899999998777311 1227778899999999999999866544344444
Q ss_pred EE
Q psy573 113 LR 114 (216)
Q Consensus 113 l~ 114 (216)
|.
T Consensus 78 v~ 79 (80)
T PF13895_consen 78 VT 79 (80)
T ss_dssp EE
T ss_pred ee
Confidence 44
No 194
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.27 E-value=1.7e-10 Score=68.76 Aligned_cols=77 Identities=21% Similarity=0.286 Sum_probs=55.8
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC----CCCCeeeecCCeEEEecCCCCCCeEEEEEEEc-CCcceEEEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM----PEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN-AVGKISASAT 201 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~----~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n-~~~~~~~~~~ 201 (216)
...+|+.+.|.|.. +.|.+.+.|++... .. ..........+.|.|.++..+|+|.|.|.+.+ ..+.....+.
T Consensus 7 ~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~ 85 (91)
T cd05871 7 YGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYT 85 (91)
T ss_pred EEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEE
Confidence 46789999999996 47889999998432 11 11122223446799999999999999999984 5555666777
Q ss_pred EEEEe
Q psy573 202 LTVQS 206 (216)
Q Consensus 202 l~v~~ 206 (216)
|.|..
T Consensus 86 l~v~~ 90 (91)
T cd05871 86 LHVIE 90 (91)
T ss_pred EEEec
Confidence 77653
No 195
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.27 E-value=7.8e-11 Score=70.22 Aligned_cols=81 Identities=19% Similarity=0.341 Sum_probs=54.8
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Eecc--ccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PIDF--ENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
.+.+.+|+++.|.|.. ..|.+.+.||+... .... ....+... .++.|.|.+++.+|+|.|.|.+.+.......
T Consensus 5 ~~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~ 81 (91)
T cd05871 5 VVYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQRSDAGVYTCTAVEHSFSQTL 81 (91)
T ss_pred EEEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCChhHCEEEEEEEEccCCeEEE
Confidence 3567899999999986 46888999998432 1111 12233333 3467999999999999999999854433223
Q ss_pred ceeEEEEe
Q psy573 109 TDAVLRVL 116 (216)
Q Consensus 109 ~~~~l~v~ 116 (216)
..+.|.|.
T Consensus 82 ~~~~l~v~ 89 (91)
T cd05871 82 AKYTLHVI 89 (91)
T ss_pred EEEEEEEe
Confidence 34555543
No 196
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.27 E-value=6.5e-11 Score=72.13 Aligned_cols=77 Identities=21% Similarity=0.198 Sum_probs=57.3
Q ss_pred EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Ee-c-----------cccCceEEEecCcEEEEcccCCC
Q psy573 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PI-D-----------FENSKRLRLVDGTNLAIQDSRKT 90 (216)
Q Consensus 28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~-~-----------~~~~~~~~~~~~~~l~i~~~~~~ 90 (216)
.+++.+..+.+|+++.|.|.. .......+.|||... .+ . ....+|..+..+++|.|.+++..
T Consensus 2 tie~~p~~~~~G~~V~L~v~~-~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~ 80 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHN-LPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQK 80 (105)
T ss_pred eEeccCCcccCCCCEEEEecC-CCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcc
Confidence 455666778899999999975 333445899999621 11 0 12456677777889999999999
Q ss_pred CCceEEEEEEcCCCC
Q psy573 91 DDGRYQCVVKNVAGT 105 (216)
Q Consensus 91 d~g~y~C~~~~~~~~ 105 (216)
|+|.|.|.+.+....
T Consensus 81 D~G~Y~~~v~~~~~~ 95 (105)
T cd05774 81 DTGFYTLQTITTNFQ 95 (105)
T ss_pred cCEEEEEEEEeCCcc
Confidence 999999999886644
No 197
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.26 E-value=1.8e-11 Score=72.17 Aligned_cols=74 Identities=19% Similarity=0.317 Sum_probs=51.6
Q ss_pred CCcEEEEeeCCCCC--CCCeeEEeeCCEEeccccCc--eEE----EecCcEEEEcccCCCCCceEEEEEEcCCCCcccce
Q psy573 39 GDTALLECGPPRGH--PEPTLVWKKNGHPIDFENSK--RLR----LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTD 110 (216)
Q Consensus 39 G~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~~~~~--~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 110 (216)
|+.+.|.|.+ .+. |.+.+.|++.+..+...... +.. ....+.|.|.+++.+|+|.|.|.+.|..+.. ..+
T Consensus 1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s 78 (84)
T cd05742 1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KES 78 (84)
T ss_pred CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEE
Confidence 7899999999 666 78899999877644211100 000 0123579999999999999999999987664 334
Q ss_pred eEEE
Q psy573 111 AVLR 114 (216)
Q Consensus 111 ~~l~ 114 (216)
..+.
T Consensus 79 ~~v~ 82 (84)
T cd05742 79 TKVN 82 (84)
T ss_pred EEEE
Confidence 4443
No 198
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.26 E-value=1.3e-10 Score=68.66 Aligned_cols=79 Identities=29% Similarity=0.559 Sum_probs=56.7
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceE-E-EecCcEEEEcccCCCCCceEEEEEEcCCCCccccee
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRL-R-LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDA 111 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 111 (216)
..+..|+.+.|.|.+ .+.|.+.+.|++++..+........ . ......|.|.++..+|+|.|.|.+.+..+.. ..++
T Consensus 4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTY 81 (85)
T ss_pred eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEE
Confidence 456789999999998 6778889999999887642211111 1 1122469999999999999999999877653 3344
Q ss_pred EEE
Q psy573 112 VLR 114 (216)
Q Consensus 112 ~l~ 114 (216)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 443
No 199
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.24 E-value=7.6e-11 Score=70.48 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=52.5
Q ss_pred cceEEecCCcEEEEeeCCC----------CCCCCeeEEeeCCEEeccccC-----ceEEEecCcEEEEcccCCCCCceEE
Q psy573 32 KSQRVAAGDTALLECGPPR----------GHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQ 96 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~----------~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~y~ 96 (216)
....+.+|+++.|.|.... ......+.|||++........ .|+ ...+..|.|.++..+|+|.|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri-~~~~~~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRM-SKEEDSIWFRPAELQDSGLYT 86 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeE-EEeCCEEEEEeCChhhCeEEE
Confidence 3467889999999997511 122348999999755433221 122 234668999999999999999
Q ss_pred EEEEcCCCC
Q psy573 97 CVVKNVAGT 105 (216)
Q Consensus 97 C~~~~~~~~ 105 (216)
|.+.|....
T Consensus 87 C~~rN~t~C 95 (104)
T cd05896 87 CVLRNSTYC 95 (104)
T ss_pred EEECCCCcc
Confidence 999987654
No 200
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.24 E-value=3e-10 Score=68.17 Aligned_cols=80 Identities=19% Similarity=0.355 Sum_probs=59.9
Q ss_pred ceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEec-------CcEEEEcccCCCC-CceEE
Q psy573 26 EFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVD-------GTNLAIQDSRKTD-DGRYQ 96 (216)
Q Consensus 26 ~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~-------~~~l~i~~~~~~d-~g~y~ 96 (216)
.++....+..+.+|+.+.|.|.+ .+.|.| .+.|..++..+......++.+.. .+.|.|.++...| .|.|.
T Consensus 3 P~i~~~~s~~~~~G~~~~L~C~~-~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 3 PIISSEQVQYAVRGERGKVKCFI-GSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred CEEecCceEEEeCCCcEEEEEEE-ccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 33466677889999999999998 555654 67888877766544344554432 2479999998877 79999
Q ss_pred EEEEcCCCCc
Q psy573 97 CVVKNVAGTR 106 (216)
Q Consensus 97 C~~~~~~~~~ 106 (216)
|.+.|..|..
T Consensus 82 C~a~N~~G~d 91 (98)
T cd05898 82 CTAWNSFGSG 91 (98)
T ss_pred EEEEeCCccc
Confidence 9999998875
No 201
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.23 E-value=7.6e-11 Score=68.81 Aligned_cols=71 Identities=34% Similarity=0.639 Sum_probs=56.0
Q ss_pred eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCc-ceEEEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG-KISASATLTV 204 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~-~~~~~~~l~v 204 (216)
..+..|+.+.|.|.+.+.|.+.+.|++++..+.. ....+.+..+..+|.|.|+|.+.+..+ ..+.++.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~------~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS------SQNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE------ESSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee------eeeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 5688999999999999888899999998765541 122277788899999999999999665 4666666654
No 202
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.23 E-value=1.1e-10 Score=68.98 Aligned_cols=73 Identities=25% Similarity=0.427 Sum_probs=55.1
Q ss_pred CCcEEEEEEeCCCC--CcEEEEeeCCccCCC----C--Cee----eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEE
Q psy573 133 GSIIVFECSVGGDA--VLTVHWKRLGSAMPE----D--RMS----VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASA 200 (216)
Q Consensus 133 g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~----~--~~~----~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~ 200 (216)
|+++.|.|.+.+.+ ...+.|...+..... . +.. ....++|.|.+++.+|+|.|+|.+.|..|....+.
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 68899999997654 457899876653311 1 000 11246799999999999999999999999888888
Q ss_pred EEEEE
Q psy573 201 TLTVQ 205 (216)
Q Consensus 201 ~l~v~ 205 (216)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 88775
No 203
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.23 E-value=7.6e-11 Score=70.24 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=52.6
Q ss_pred eEEecCCcEEEEeeCCC----CCCCCeeEEeeCCEEeccccCceEEE-ecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 34 QRVAAGDTALLECGPPR----GHPEPTLVWKKNGHPIDFENSKRLRL-VDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~----~~~~~~~~W~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
..+..|.+..|.|.-.. ..+.+.+.|||++.++.... .++.. .+...|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~-~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g 80 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDN-EKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG 80 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCC-cceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence 45678999999996311 34567999999999875322 22222 23457999999999999999999987543
No 204
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.23 E-value=9.1e-11 Score=69.71 Aligned_cols=70 Identities=20% Similarity=0.401 Sum_probs=57.4
Q ss_pred CceeEeCCCcEEEEEE-eCCCCCcEEEEeeCCccC--CCCCeeeecCCeEEEecCCCCCCe-EEEEEEEcCCcc
Q psy573 126 KDTTVSAGSIIVFECS-VGGDAVLTVHWKRLGSAM--PEDRMSVLPSRSLQLSDVRLEDGG-EYVCEAENAVGK 195 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~-~~~~p~~~i~W~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~n~~~~ 195 (216)
....+.+|+.+.|.|. ..+.|.|.+.|++++... ...+.....++.|.|.+++.+|.| .|.|.|.|....
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~ 84 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLR 84 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccccc
Confidence 5568889999999997 589999999999876442 234555556799999999999999 899999988644
No 205
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.21 E-value=9.8e-11 Score=69.85 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=49.5
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccc------------cCceEEEe------cCcEEEEcccCCCCCceE
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFE------------NSKRLRLV------DGTNLAIQDSRKTDDGRY 95 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~~~~~------~~~~l~i~~~~~~d~g~y 95 (216)
+.+.+|++++|+|.+ .+.+.+.+.||++++..... ...++... .+.+|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 467899999999998 66788899999765332111 11111111 124699999999999999
Q ss_pred EEEEEcCCC
Q psy573 96 QCVVKNVAG 104 (216)
Q Consensus 96 ~C~~~~~~~ 104 (216)
+|.+.+..+
T Consensus 81 ~C~v~~~~~ 89 (94)
T cd07690 81 ICEVEDKKE 89 (94)
T ss_pred EEEECCccc
Confidence 999987543
No 206
>smart00409 IG Immunoglobulin.
Probab=99.20 E-value=1.1e-09 Score=64.53 Aligned_cols=78 Identities=37% Similarity=0.640 Sum_probs=61.2
Q ss_pred ceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..+...... ..|.|.++..+|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999998888889999998 66554 233333322 57999999999999999999988887766676
Q ss_pred EEE
Q psy573 202 LTV 204 (216)
Q Consensus 202 l~v 204 (216)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 665
No 207
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.20 E-value=1.1e-09 Score=64.53 Aligned_cols=78 Identities=37% Similarity=0.640 Sum_probs=61.2
Q ss_pred ceeEeCCCcEEEEEEeCCCCCcEEEEeeC-CccCC-CCCeeeecC---CeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRL-GSAMP-EDRMSVLPS---RSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~-~~~~~-~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..+...... ..|.|.++..+|.|.|.|.+.+..+.....+.
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 45677899999999998888889999998 66554 233333322 57999999999999999999988887766676
Q ss_pred EEE
Q psy573 202 LTV 204 (216)
Q Consensus 202 l~v 204 (216)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 665
No 208
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.20 E-value=2.2e-10 Score=69.14 Aligned_cols=71 Identities=24% Similarity=0.549 Sum_probs=51.1
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc------ccCceEEEe----cCcEEEEcccCCCCCceEEEEEEc
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDF------ENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
+.+.+.+|++++|.|.+ .+.+.+.+.|++.+..... ....++... ....|.|.+++.+|+|.|+|.+..
T Consensus 5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 83 (95)
T cd05717 5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT 83 (95)
T ss_pred CcEEEcCCCCEEEEEEE-CCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence 45678999999999998 5667789999863322100 112344332 234799999999999999999986
Q ss_pred CC
Q psy573 102 VA 103 (216)
Q Consensus 102 ~~ 103 (216)
..
T Consensus 84 ~~ 85 (95)
T cd05717 84 MP 85 (95)
T ss_pred CC
Confidence 54
No 209
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.20 E-value=2.3e-10 Score=68.23 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=56.5
Q ss_pred eeEeCCCcEEEEEEe-C----CCCCcEEEEeeCCccCCCCCe--ee-ecCCeEEEecCCCCCCeEEEEEEEcCCcc----
Q psy573 128 TTVSAGSIIVFECSV-G----GDAVLTVHWKRLGSAMPEDRM--SV-LPSRSLQLSDVRLEDGGEYVCEAENAVGK---- 195 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~-~----~~p~~~i~W~~~~~~~~~~~~--~~-~~~~~l~i~~~~~~d~g~y~C~~~n~~~~---- 195 (216)
..+..|....|.|.- . ..+.+++.|+|++..+..... .. .....|.|.++..+|+|.|+|.+.+..+.
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~ 84 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYN 84 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEE
Confidence 356678899999973 2 346679999999988764432 22 13457999999999999999999998654
Q ss_pred eEEEEEEEE
Q psy573 196 ISASATLTV 204 (216)
Q Consensus 196 ~~~~~~l~v 204 (216)
.++.+.|.|
T Consensus 85 vtr~~~l~v 93 (95)
T cd05897 85 ITRIIKLRI 93 (95)
T ss_pred EEEEEEEEE
Confidence 455555544
No 210
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.19 E-value=5.7e-10 Score=67.37 Aligned_cols=77 Identities=26% Similarity=0.503 Sum_probs=54.8
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------CCCCCeeee----cCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVL----PSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
....+.+|+.+.|.|.+.+.+.+.+.|++.+.. ....++... ....|.|.+++.+|+|.|.|.+.+.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 84 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM 84 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence 456788999999999998888889999752221 122233221 2346999999999999999999876
Q ss_pred CcceEEEEEEE
Q psy573 193 VGKISASATLT 203 (216)
Q Consensus 193 ~~~~~~~~~l~ 203 (216)
.. .+....|.
T Consensus 85 ~~-~~~~~~~~ 94 (95)
T cd05717 85 PV-QTAKATVT 94 (95)
T ss_pred CC-ceEEEEEE
Confidence 53 35555454
No 211
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.19 E-value=4.1e-10 Score=67.39 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=58.1
Q ss_pred ceeEeCCCcEEEEEEeCC-----------CCCcEEEEeeCCccCCCCC-------eeeecCCeEEEecCCCCCCeEEEEE
Q psy573 127 DTTVSAGSIIVFECSVGG-----------DAVLTVHWKRLGSAMPEDR-------MSVLPSRSLQLSDVRLEDGGEYVCE 188 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~-----------~p~~~i~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~g~y~C~ 188 (216)
...+.+|+.+.|.|.... ....++.|+|++....... .....+..|.|.++..+|+|.|+|.
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV 88 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence 356789999999999621 1234799999974433211 2223567899999999999999999
Q ss_pred EEcCCcceEEEEEEEE
Q psy573 189 AENAVGKISASATLTV 204 (216)
Q Consensus 189 ~~n~~~~~~~~~~l~v 204 (216)
+.|.......+++|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999888888877754
No 212
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.17 E-value=2.5e-10 Score=68.52 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=53.5
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEe----------------ccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPI----------------DFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------------~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
|++|+|.|.. .......+.|++..... .....+++.+..+++|.|.+++.+|+|.|.|.+...
T Consensus 1 G~~VtL~c~~-~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSN-LPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEccc-CCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 7899999987 44556689999865321 112345566666789999999999999999999987
Q ss_pred CCCcccceeEE
Q psy573 103 AGTRESTDAVL 113 (216)
Q Consensus 103 ~~~~~~~~~~l 113 (216)
.+......+.|
T Consensus 80 ~~~~~~~~~~l 90 (92)
T cd05741 80 NGVTENAKFFL 90 (92)
T ss_pred CCcEEEEEEEE
Confidence 65544433433
No 213
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.16 E-value=6.3e-10 Score=64.81 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=51.5
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
....+.+|+.+.|.|.. ..+...+.|++++..+.. ..++..... .|.|.+++.+|+|.|.|.....
T Consensus 4 ~~~tv~~g~~v~L~C~~--~s~~A~v~W~~ng~~l~~--~~r~~~~~~-GLlI~~~~~~dsG~Y~C~s~E~ 69 (85)
T cd05872 4 KNRTVAPGADVVLPCQL--RSNLASPVWLFNGTPLNA--QFSYRVGTD-GLLILVTSPEHSGTYRCYSEEE 69 (85)
T ss_pred eEEEEecCCCEEEECCC--CCCCccEEEEECCcccCC--CcceEEeCC-CCEEEECCHhhCEEEEEEEecC
Confidence 35688999999999987 345679999999998743 344444433 4779999999999999998743
No 214
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.15 E-value=3.8e-10 Score=68.25 Aligned_cols=79 Identities=18% Similarity=0.332 Sum_probs=54.7
Q ss_pred ecCCcEEEEeeCCCCCCCCeeEEeeCCEEecc---------------ccCceEEEec-CcEEEEcccCCCCCceEEEEEE
Q psy573 37 AAGDTALLECGPPRGHPEPTLVWKKNGHPIDF---------------ENSKRLRLVD-GTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~~~~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
..|++|+|+|..........+.|++....+.. ....++.+.. +.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999998733244568999986432211 1113444434 3789999999999999999999
Q ss_pred cCCCCcccceeEEEE
Q psy573 101 NVAGTRESTDAVLRV 115 (216)
Q Consensus 101 ~~~~~~~~~~~~l~v 115 (216)
...+......+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 877665555555554
No 215
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.14 E-value=1.5e-10 Score=64.50 Aligned_cols=57 Identities=37% Similarity=0.669 Sum_probs=44.7
Q ss_pred CCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeee--cCC----eEEEecCCCCCCeEEEEEE
Q psy573 133 GSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVL--PSR----SLQLSDVRLEDGGEYVCEA 189 (216)
Q Consensus 133 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~d~g~y~C~~ 189 (216)
|+.+.|.|.+ .+.+...+.|++++........... ... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 7777889999999887654432221 122 2999999999999999986
No 216
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.13 E-value=1.6e-09 Score=63.71 Aligned_cols=72 Identities=29% Similarity=0.624 Sum_probs=54.9
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
....+..|+++.|.|.+ .+.+.+.+.|+++ +..+. ...+...... ..|.|.++...|+|.|.|.+.+..+..
T Consensus 2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00410 2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 45678899999999998 5557789999998 76663 2233333322 579999999999999999999765543
No 217
>smart00409 IG Immunoglobulin.
Probab=99.13 E-value=1.6e-09 Score=63.71 Aligned_cols=72 Identities=29% Similarity=0.624 Sum_probs=54.9
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeC-CEEeccccCceEEEecC---cEEEEcccCCCCCceEEEEEEcCCCCc
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKN-GHPIDFENSKRLRLVDG---TNLAIQDSRKTDDGRYQCVVKNVAGTR 106 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~-~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~g~y~C~~~~~~~~~ 106 (216)
....+..|+++.|.|.+ .+.+.+.+.|+++ +..+. ...+...... ..|.|.++...|+|.|.|.+.+..+..
T Consensus 2 ~~~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~ 77 (86)
T smart00409 2 PSVTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLA--ESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA 77 (86)
T ss_pred CcEEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcC--CCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE
Confidence 45678899999999998 5557789999998 76663 2233333322 579999999999999999999765543
No 218
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.11 E-value=8.5e-11 Score=65.51 Aligned_cols=60 Identities=30% Similarity=0.632 Sum_probs=43.0
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc----EEEEcccCCCCCceEEEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT----NLAIQDSRKTDDGRYQCVV 99 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~----~l~i~~~~~~d~g~y~C~~ 99 (216)
|+.++|.|.+....+...+.|++++........... ..... .|.|.+++.+|+|.|.|.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNR-STNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEE-EETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEe-ecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 789999998734556779999998775522211111 11222 2999999999999999986
No 219
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.11 E-value=1.7e-09 Score=67.21 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=52.7
Q ss_pred cccceEEecCCcEEEEeeCCCC---CCCCeeEEe---------------eCCEEec---cccCceEEEe-----cCcEEE
Q psy573 30 QPKSQRVAAGDTALLECGPPRG---HPEPTLVWK---------------KNGHPID---FENSKRLRLV-----DGTNLA 83 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~---~~~~~~~W~---------------~~~~~~~---~~~~~~~~~~-----~~~~l~ 83 (216)
.+..+.+..|+.+.|.|..... .+..++.|. +++.... ....+|+.+. .+.+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 3456788999999999997332 234689992 2333321 1223355442 346899
Q ss_pred EcccCCCCCceEEEEEEcCCCC
Q psy573 84 IQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 84 i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
|.+++.+|.|.|+|.+.+....
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EccCCcccCEEEEEEEEcCCCc
Confidence 9999999999999999987653
No 220
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.11 E-value=1.7e-09 Score=75.38 Aligned_cols=68 Identities=26% Similarity=0.556 Sum_probs=53.2
Q ss_pred ceEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEe-cCcEEEEcccCCCCCceEEEEEEcC
Q psy573 33 SQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLV-DGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
+..+.+|+.+.|.|.+..+ .|.+.+.|||+++.+.. ..++... +++.|.|.+++.+|+|.|+|.+...
T Consensus 138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~--~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~ 210 (227)
T PHA02826 138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLY--TDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN 210 (227)
T ss_pred cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCC--CCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence 4567899999999987332 35789999999998842 2344443 3458999999999999999999874
No 221
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.10 E-value=1.1e-09 Score=62.92 Aligned_cols=60 Identities=20% Similarity=0.298 Sum_probs=46.9
Q ss_pred EEEEEEe-CCCCCcEEEEeeCCccCCCCCee------eecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 136 IVFECSV-GGDAVLTVHWKRLGSAMPEDRMS------VLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 136 ~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
+.|.|.. .+.|.+.|.|++++..+...... ....++|.+.....+|++.|+|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 6899998 56688999999999988643211 112346888888889999999999998875
No 222
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.09 E-value=3.8e-09 Score=63.07 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=64.2
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCC--C-Ceeee------cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPE--D-RMSVL------PSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~--~-~~~~~------~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
....+.+|+.+.|.|.+.++|.|. +.|.+++..+.. . ..... ..+.|.+..+..++.|.|+|.|.|...+
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~ 90 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence 345788999999999999999997 999998765421 1 11111 1256999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy573 196 ISASATLTVQ 205 (216)
Q Consensus 196 ~~~~~~l~v~ 205 (216)
.+.++.|.|+
T Consensus 91 ~s~tF~l~v~ 100 (101)
T cd05860 91 ASVTFNVYVN 100 (101)
T ss_pred EEEEEEEEEe
Confidence 9999988875
No 223
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.09 E-value=1.9e-09 Score=64.28 Aligned_cols=71 Identities=17% Similarity=0.376 Sum_probs=51.3
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEec------cccCceEEEec----CcEEEEcccCCCCCceEEEEEEc
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPID------FENSKRLRLVD----GTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~------~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
+++.+.+|++++|.|.+ .+.....+.|++.+..+. .....|+.... ..+|+|.+++.+|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 35788999999999998 555566788987664331 12334444333 23699999999999999999976
Q ss_pred CC
Q psy573 102 VA 103 (216)
Q Consensus 102 ~~ 103 (216)
..
T Consensus 84 ~p 85 (95)
T cd05881 84 DP 85 (95)
T ss_pred cc
Confidence 43
No 224
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.08 E-value=3.1e-09 Score=64.81 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=57.1
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccC--------------------CCCCeeeecCCeEEEecCCCCCCeE
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAM--------------------PEDRMSVLPSRSLQLSDVRLEDGGE 184 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~--------------------~~~~~~~~~~~~l~i~~~~~~d~g~ 184 (216)
+....+.+|+++.|.|.........+.|+|..... ...+.....+++|.|.+++.+|+|.
T Consensus 5 ~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~ 84 (105)
T cd05774 5 LVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGF 84 (105)
T ss_pred ccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEE
Confidence 34456789999999998755555689999963211 1123344456789999999999999
Q ss_pred EEEEEEcCCc-ceEEEEEEE
Q psy573 185 YVCEAENAVG-KISASATLT 203 (216)
Q Consensus 185 y~C~~~n~~~-~~~~~~~l~ 203 (216)
|+|.+.+... .....+.|.
T Consensus 85 Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 85 YTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEEEeCCccEEEEEEEEE
Confidence 9999998874 455555554
No 225
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.08 E-value=7.9e-10 Score=66.05 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=52.2
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
|.+...| ...+.+|++|+|.|.. ..+...+.|+++|........ ......+.|.|.+++.+|+|.|+|...+.
T Consensus 3 P~L~a~p-~~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~--~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEP-SSVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKP--PEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecC-CCccCCCCcEEEEEec--CCCCCEEEEEECCCCcccccc--CCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 3444445 3467899999999986 456678999999875422110 11122457999999999999999999875
No 226
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.08 E-value=8.3e-10 Score=65.89 Aligned_cols=67 Identities=22% Similarity=0.447 Sum_probs=49.2
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCccC-CC--------------CCeee------ecCCeEEEecCCCCCCeEEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAM-PE--------------DRMSV------LPSRSLQLSDVRLEDGGEYVC 187 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~-~~--------------~~~~~------~~~~~l~i~~~~~~d~g~y~C 187 (216)
.+..|++++|.|.+.+.+.+.+.|++++... .. .+... .....|.|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C 82 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC 82 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence 5678999999999998899999999665321 11 00000 012359999999999999999
Q ss_pred EEEcCCcc
Q psy573 188 EAENAVGK 195 (216)
Q Consensus 188 ~~~n~~~~ 195 (216)
.+.|..+.
T Consensus 83 ~v~~~~~~ 90 (94)
T cd07690 83 EVEDKKEE 90 (94)
T ss_pred EECCccce
Confidence 99887554
No 227
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.07 E-value=1.6e-09 Score=67.17 Aligned_cols=74 Identities=22% Similarity=0.381 Sum_probs=53.3
Q ss_pred ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE---E---ec------cccCceEEEe-----cCcEEEEcccCCCC
Q psy573 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH---P---ID------FENSKRLRLV-----DGTNLAIQDSRKTD 91 (216)
Q Consensus 29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~---~---~~------~~~~~~~~~~-----~~~~l~i~~~~~~d 91 (216)
..|..+.+.+|++++|.|.+ ...+...+.||+... . +. ....+++.+. ...+|+|.+++.+|
T Consensus 3 q~~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 3 QSPQSLSVQEGENVTLNCNY-STSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred ecCCceEEcCCCCEEEEEEE-CCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 45667889999999999998 444677999998531 1 00 0123444433 23479999999999
Q ss_pred CceEEEEEEcCC
Q psy573 92 DGRYQCVVKNVA 103 (216)
Q Consensus 92 ~g~y~C~~~~~~ 103 (216)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998653
No 228
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.07 E-value=2.2e-09 Score=61.66 Aligned_cols=64 Identities=22% Similarity=0.339 Sum_probs=48.7
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCce---EEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKR---LRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
+.|+|....+.|.+.+.||+++..+....... -.....+.|.|.....+|.+.|+|++.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 68999998889999999999999885321100 00112246999999999999999999997764
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.07 E-value=3.3e-09 Score=61.84 Aligned_cols=64 Identities=22% Similarity=0.398 Sum_probs=50.7
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEE
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAE 190 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 190 (216)
....+..|+++.|.|...+. .+.+.|++++..+..+.........|.|..+..+|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe
Confidence 34578899999999998754 67999999999886543333344457799999999999999976
No 230
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.02 E-value=6.7e-09 Score=64.12 Aligned_cols=78 Identities=22% Similarity=0.368 Sum_probs=51.3
Q ss_pred cCCcEEEEeeCCCCCC-----------CCeeEEeeCCE----E-e---------ccccCceEEEe------cCcEEEEcc
Q psy573 38 AGDTALLECGPPRGHP-----------EPTLVWKKNGH----P-I---------DFENSKRLRLV------DGTNLAIQD 86 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~-----------~~~~~W~~~~~----~-~---------~~~~~~~~~~~------~~~~l~i~~ 86 (216)
.|++++|+|......+ .+.+.|++... . + .....+|+.+. .+.+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999998732221 46899998421 1 1 11233455553 356899999
Q ss_pred cCCCCCceEEEEEEcCCCCcccceeEEEEe
Q psy573 87 SRKTDDGRYQCVVKNVAGTRESTDAVLRVL 116 (216)
Q Consensus 87 ~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~ 116 (216)
++.+|+|.|+|.+....... +..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCc-eeEEEEEEE
Confidence 99999999999998654332 444555554
No 231
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=99.00 E-value=4.7e-09 Score=63.52 Aligned_cols=77 Identities=21% Similarity=0.373 Sum_probs=49.3
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCE----Ee-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEE
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVV 99 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~ 99 (216)
|++++|.|..........+.|++... .+ .....++.... .+.+|+|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999863332334799998432 11 01112232221 2457999999999999999999
Q ss_pred EcCCCCcccceeEEEE
Q psy573 100 KNVAGTRESTDAVLRV 115 (216)
Q Consensus 100 ~~~~~~~~~~~~~l~v 115 (216)
...........+.|.|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 8655444455666665
No 232
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.98 E-value=8e-09 Score=63.67 Aligned_cols=78 Identities=26% Similarity=0.325 Sum_probs=51.1
Q ss_pred cCCcEEEEeeCCCC-----CCCCeeEEeeCCE----E---e-c--------cccCceEEEec----CcEEEEcccCCCCC
Q psy573 38 AGDTALLECGPPRG-----HPEPTLVWKKNGH----P---I-D--------FENSKRLRLVD----GTNLAIQDSRKTDD 92 (216)
Q Consensus 38 ~G~~~~l~C~~~~~-----~~~~~~~W~~~~~----~---~-~--------~~~~~~~~~~~----~~~l~i~~~~~~d~ 92 (216)
.|++++|.|.+... .....+.||+... . + . ....+++.+.. +.+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999986222 2345799998531 1 0 0 11223444421 35799999999999
Q ss_pred ceEEEEEEcCCCCcccceeEEEEe
Q psy573 93 GRYQCVVKNVAGTRESTDAVLRVL 116 (216)
Q Consensus 93 g~y~C~~~~~~~~~~~~~~~l~v~ 116 (216)
|.|.|.+.+..+.. ...+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~-~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDE-SVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccce-EEEEEEEEE
Confidence 99999998765543 445556554
No 233
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.98 E-value=5.9e-09 Score=62.26 Aligned_cols=72 Identities=17% Similarity=0.317 Sum_probs=53.1
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe-eeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM-SVLPSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
|.+...+. ..+..|++++|.|... .+...+.|+++|........ .......+.|.++..+|+|.|+|...+.
T Consensus 3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 44444443 4788999999999885 66778999999876443211 1123356999999999999999999886
No 234
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.98 E-value=5.1e-09 Score=61.32 Aligned_cols=68 Identities=22% Similarity=0.389 Sum_probs=47.7
Q ss_pred EEEEEEeCC-CCCcEEEEeeCCccCCCCCeee--e-------cCCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEE
Q psy573 136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV--L-------PSRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLT 203 (216)
Q Consensus 136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~--~-------~~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~ 203 (216)
+.|.|.+.+ .|.+.+.|++++..+....... . ..+.|.+.....+|.|.|+|.+.|.... ...++.|.
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 689999976 5888999999998765432111 1 1135777777778899999999998754 44454443
No 235
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.98 E-value=8.3e-09 Score=64.39 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=50.2
Q ss_pred cccceEEecCCcEEEEeeCCCCCC---CCeeEEeeC----CEE--ec-----------cccCceEEEe-----cCcEEEE
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHP---EPTLVWKKN----GHP--ID-----------FENSKRLRLV-----DGTNLAI 84 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~---~~~~~W~~~----~~~--~~-----------~~~~~~~~~~-----~~~~l~i 84 (216)
.+..+.+.+|++++|.|......+ ...+.||+. +.. +. ....+++... .+.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 355678999999999998732222 346999852 111 10 0111233222 2457999
Q ss_pred cccCCCCCceEEEEEEcCCCC
Q psy573 85 QDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 85 ~~~~~~d~g~y~C~~~~~~~~ 105 (216)
.+++.+|+|.|+|.+.+....
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eeCChhhCEEEEEEEEeCCCC
Confidence 999999999999999976553
No 236
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.96 E-value=1.1e-08 Score=63.04 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=51.1
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCC-CCeeEEeeCC--E---Eec-------cccCceEEEec---CcEEEEcccCCC
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHP-EPTLVWKKNG--H---PID-------FENSKRLRLVD---GTNLAIQDSRKT 90 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~--~---~~~-------~~~~~~~~~~~---~~~l~i~~~~~~ 90 (216)
+...|....+.+|++++|.|.+ .+.. ...+.||+.. + .+. .....++.... ...|.|.+++.+
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKA-SQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 4456777899999999999987 3333 5689999842 1 111 00112333322 236999999999
Q ss_pred CCceEEEEEEcC
Q psy573 91 DDGRYQCVVKNV 102 (216)
Q Consensus 91 d~g~y~C~~~~~ 102 (216)
|+|.|.|.+.+.
T Consensus 82 Dsg~Y~Ca~~~~ 93 (106)
T cd04980 82 DAAVYYCQQYGT 93 (106)
T ss_pred HCEEEEEEEeCC
Confidence 999999998653
No 237
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.96 E-value=7.8e-09 Score=62.78 Aligned_cols=76 Identities=21% Similarity=0.377 Sum_probs=47.5
Q ss_pred CcEEEEeeCCCCC--CCCeeEEeeCCEE----e-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEE
Q psy573 40 DTALLECGPPRGH--PEPTLVWKKNGHP----I-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV 98 (216)
Q Consensus 40 ~~~~l~C~~~~~~--~~~~~~W~~~~~~----~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~ 98 (216)
++++|.|...... ....+.|++.... + ......+..+. .+.+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999873332 2447999995421 1 11123344333 246899999999999999999
Q ss_pred EEcCCCCcccceeEEEE
Q psy573 99 VKNVAGTRESTDAVLRV 115 (216)
Q Consensus 99 ~~~~~~~~~~~~~~l~v 115 (216)
+...........+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 87533222344445544
No 238
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.95 E-value=1.1e-08 Score=61.16 Aligned_cols=76 Identities=13% Similarity=0.223 Sum_probs=49.9
Q ss_pred CcEEEEeeCCCCCCCCeeEEeeCC----EEe-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573 40 DTALLECGPPRGHPEPTLVWKKNG----HPI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 40 ~~~~l~C~~~~~~~~~~~~W~~~~----~~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
++++|+|.........++.|.+.. ..+ .....+|.... .+.+|.|.+++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 478999987433445589998742 111 11223454442 35689999999999999999987
Q ss_pred cCCCCcccceeEEEE
Q psy573 101 NVAGTRESTDAVLRV 115 (216)
Q Consensus 101 ~~~~~~~~~~~~l~v 115 (216)
.........+..|.|
T Consensus 81 tfP~G~~~~~~~l~~ 95 (96)
T cd05887 81 TFPLGNTQSSTTVTV 95 (96)
T ss_pred eCCCCCeeEEEEEEE
Confidence 654443455566655
No 239
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.94 E-value=7.1e-09 Score=64.32 Aligned_cols=73 Identities=15% Similarity=0.324 Sum_probs=51.9
Q ss_pred EecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE--Eec--------------cccCceEEEe----cCcEEEEccc
Q psy573 28 RVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH--PID--------------FENSKRLRLV----DGTNLAIQDS 87 (216)
Q Consensus 28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~--~~~--------------~~~~~~~~~~----~~~~l~i~~~ 87 (216)
...|....+.+|++++|.|.+ .+ +...+.||+... ... .....++... ....|.|.++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred EECCCceEEcCCCcEEEEEEE-CC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 356777899999999999998 44 667899999532 110 0012333322 2347999999
Q ss_pred CCCCCceEEEEEEcC
Q psy573 88 RKTDDGRYQCVVKNV 102 (216)
Q Consensus 88 ~~~d~g~y~C~~~~~ 102 (216)
+.+|+|.|+|.+...
T Consensus 80 ~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 80 EPEDSAVYLCASSLG 94 (110)
T ss_pred ChhhCEEEEEEeeCC
Confidence 999999999998754
No 240
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.93 E-value=1.8e-08 Score=60.20 Aligned_cols=82 Identities=18% Similarity=0.258 Sum_probs=60.3
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
..+.+.+|+.+.|.|.+ ...|.|. +.|.+++..+............. +.|++..++.+|.|.|+|.+.|...
T Consensus 11 ~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 35689999999999998 8888887 99999877553222212222211 4699999999999999999999876
Q ss_pred CcccceeEEEE
Q psy573 105 TRESTDAVLRV 115 (216)
Q Consensus 105 ~~~~~~~~l~v 115 (216)
.. +.++.|.|
T Consensus 90 ~~-s~tF~l~v 99 (101)
T cd05860 90 SA-SVTFNVYV 99 (101)
T ss_pred eE-EEEEEEEE
Confidence 54 44555554
No 241
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.93 E-value=1.8e-08 Score=60.44 Aligned_cols=71 Identities=21% Similarity=0.315 Sum_probs=51.3
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCC-------------------CCeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPE-------------------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~-------------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
|++++|.|.........+.|+++...... .+.....+..|.|.+++.+|+|.|.|.+....
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence 78899999987766678999986533211 12223345789999999999999999998876
Q ss_pred cc-eEEEEEEE
Q psy573 194 GK-ISASATLT 203 (216)
Q Consensus 194 ~~-~~~~~~l~ 203 (216)
+. ....+.|.
T Consensus 81 ~~~~~~~~~l~ 91 (92)
T cd05741 81 GVTENAKFFLR 91 (92)
T ss_pred CcEEEEEEEEE
Confidence 44 44455443
No 242
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.92 E-value=2.5e-08 Score=61.65 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=51.9
Q ss_pred cCCcEEEEeeCCCCCC---------CCeeEEeeCC--EEe------------ccccCceEEEe------cCcEEEEcccC
Q psy573 38 AGDTALLECGPPRGHP---------EPTLVWKKNG--HPI------------DFENSKRLRLV------DGTNLAIQDSR 88 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~---------~~~~~W~~~~--~~~------------~~~~~~~~~~~------~~~~l~i~~~~ 88 (216)
.|++++|+|......+ ...+.||+.. +.. .....+|+.+. .+.+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999998732221 3679999852 111 11233455542 24579999999
Q ss_pred CCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573 89 KTDDGRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 89 ~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
.+|+|.|.|.+...... ....+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 99999999999875433 24456666654
No 243
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.92 E-value=1.9e-08 Score=61.95 Aligned_cols=79 Identities=27% Similarity=0.356 Sum_probs=51.0
Q ss_pred cCCcEEEEeeCCCC-----CCCCeeEEeeCC-----E-Eec----------cccCceEEEe----cCcEEEEcccCCCCC
Q psy573 38 AGDTALLECGPPRG-----HPEPTLVWKKNG-----H-PID----------FENSKRLRLV----DGTNLAIQDSRKTDD 92 (216)
Q Consensus 38 ~G~~~~l~C~~~~~-----~~~~~~~W~~~~-----~-~~~----------~~~~~~~~~~----~~~~l~i~~~~~~d~ 92 (216)
.|++++|+|..... .....+.|++.. . .+. .....++... .+.+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999987322 235689999862 1 110 0111222221 346899999999999
Q ss_pred ceEEEEEEcCCCCcccceeEEEEee
Q psy573 93 GRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 93 g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
|.|.|.+.+..+. ....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~-~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIED-EQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCc-eEEEEEEEEEE
Confidence 9999999976443 24556666643
No 244
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.92 E-value=3.2e-09 Score=60.94 Aligned_cols=74 Identities=26% Similarity=0.630 Sum_probs=47.9
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
|.+...+.......+. +.|.|.+....+.+.+.|+ +.... ...........++.|.|.++..+|.|.|+|.+.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~-~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPS-FNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEE-EEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCc-eeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 5555566555444444 9999998433337899999 11111 1111122223356799999999999999999875
No 245
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.92 E-value=1.8e-09 Score=62.01 Aligned_cols=72 Identities=29% Similarity=0.488 Sum_probs=47.3
Q ss_pred ceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCc-cCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573 119 PYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGS-AMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN 191 (216)
Q Consensus 119 p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 191 (216)
|.+...+.......+. +.|.|.+.+.+ .+.+.|+.... ............+.|.|.++..+|.|.|+|.|.|
T Consensus 2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4444444444343334 99999998887 88899991110 0011112222456799999999999999999986
No 246
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.91 E-value=9.7e-09 Score=60.58 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=49.2
Q ss_pred CCcEEEEeeCCCCC--CCCeeEEeeCCEEecc---ccCceEE----EecCcEEEEcccCCCCCceEEEEEEcCCCCcccc
Q psy573 39 GDTALLECGPPRGH--PEPTLVWKKNGHPIDF---ENSKRLR----LVDGTNLAIQDSRKTDDGRYQCVVKNVAGTREST 109 (216)
Q Consensus 39 G~~~~l~C~~~~~~--~~~~~~W~~~~~~~~~---~~~~~~~----~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 109 (216)
|+++.|.|.+ .+. +...+.|...++.... ....+.. ....+.|.|.+++.+|+|.|+|.+.+..+.. ..
T Consensus 1 Ge~~~L~C~~-~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~ 78 (86)
T cd05862 1 GEKLVLNCTA-RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KN 78 (86)
T ss_pred CCcEEEEEEE-EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-cc
Confidence 7899999998 433 3458899887654311 0100100 1123579999999999999999999876643 33
Q ss_pred eeEEEE
Q psy573 110 DAVLRV 115 (216)
Q Consensus 110 ~~~l~v 115 (216)
...|.|
T Consensus 79 ~t~~~V 84 (86)
T cd05862 79 STIVIV 84 (86)
T ss_pred cEEEEE
Confidence 445544
No 247
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.90 E-value=1.8e-08 Score=59.02 Aligned_cols=64 Identities=23% Similarity=0.439 Sum_probs=44.0
Q ss_pred cEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 41 TALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 41 ~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
++.|.|.+..+.|.+.+.|++++..+...........++ +.|.+.....+|.|.|+|.+.+...
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l 70 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEAL 70 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccC
Confidence 368999984457888999999998774321111111111 3577887778888999999987653
No 248
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.90 E-value=4.4e-08 Score=60.49 Aligned_cols=75 Identities=20% Similarity=0.443 Sum_probs=53.9
Q ss_pred CCCcEEEEEEeCCCC------------CcEEEEeeCCc--cC--------------CC-CCeeee------cCCeEEEec
Q psy573 132 AGSIIVFECSVGGDA------------VLTVHWKRLGS--AM--------------PE-DRMSVL------PSRSLQLSD 176 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p------------~~~i~W~~~~~--~~--------------~~-~~~~~~------~~~~l~i~~ 176 (216)
.|++++|.|...... .+.|.|+|... .. .. ++.... .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999975432 35899998421 00 00 122221 246799999
Q ss_pred CCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 177 VRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 177 ~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
++.+|+|.|.|.+.+........+.|.|.+
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g 110 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG 110 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence 999999999999998888888888888764
No 249
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.90 E-value=2.7e-08 Score=62.33 Aligned_cols=76 Identities=22% Similarity=0.413 Sum_probs=50.2
Q ss_pred cccceEEecCCcEEEEeeCCCCC---CCCeeEEeeCCE------Ee-c-----------cccCceEEEec-----CcEEE
Q psy573 30 QPKSQRVAAGDTALLECGPPRGH---PEPTLVWKKNGH------PI-D-----------FENSKRLRLVD-----GTNLA 83 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~---~~~~~~W~~~~~------~~-~-----------~~~~~~~~~~~-----~~~l~ 83 (216)
.|..+.+.+|++++|.|...... ....+.||+... .+ . .....|+.+.. +.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 35667889999999999873222 225699986321 11 0 01112333322 35799
Q ss_pred EcccCCCCCceEEEEEEcCCCC
Q psy573 84 IQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 84 i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
|.+++.+|+|.|.|.+.+....
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCCC
Confidence 9999999999999999976543
No 250
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.88 E-value=4.7e-08 Score=60.21 Aligned_cols=75 Identities=25% Similarity=0.496 Sum_probs=53.9
Q ss_pred CCCcEEEEEEeCCCC------CcEEEEeeCC--cc----C---CCC----------Ceee----ecCCeEEEecCCCCCC
Q psy573 132 AGSIIVFECSVGGDA------VLTVHWKRLG--SA----M---PED----------RMSV----LPSRSLQLSDVRLEDG 182 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p------~~~i~W~~~~--~~----~---~~~----------~~~~----~~~~~l~i~~~~~~d~ 182 (216)
.|+++.|.|.....+ ...+.|++.. .. + ... +... .....|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999976542 4579999863 10 0 000 0000 0235799999999999
Q ss_pred eEEEEEEEcCCcceEEEEEEEEEe
Q psy573 183 GEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 183 g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888875
No 251
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.88 E-value=2.1e-08 Score=61.10 Aligned_cols=76 Identities=24% Similarity=0.389 Sum_probs=47.9
Q ss_pred CCcEEEEeeCCCC--CCCCeeEEeeCCE--Ee---------c----cccCceEEEe------cCcEEEEcccCCCCCceE
Q psy573 39 GDTALLECGPPRG--HPEPTLVWKKNGH--PI---------D----FENSKRLRLV------DGTNLAIQDSRKTDDGRY 95 (216)
Q Consensus 39 G~~~~l~C~~~~~--~~~~~~~W~~~~~--~~---------~----~~~~~~~~~~------~~~~l~i~~~~~~d~g~y 95 (216)
|++++|+|..... .....+.|++... .+ . ....+|+.+. .+.+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999987322 1223688988541 11 0 0122344432 235799999999999999
Q ss_pred EEEEEcCCCCcccceeEEEE
Q psy573 96 QCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 96 ~C~~~~~~~~~~~~~~~l~v 115 (216)
+|.+.+..+. ....+.|.|
T Consensus 81 ~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEecCCcE-EEEEEEEEE
Confidence 9999976554 344445544
No 252
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.88 E-value=4.9e-08 Score=64.30 Aligned_cols=87 Identities=17% Similarity=0.356 Sum_probs=60.4
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEE
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCV 98 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~ 98 (216)
.+.+.+|++++|.|....+...+++.|+|..+.+ .....+++... .+..|.|.+++.+|+|.|.|.
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~ 103 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI 103 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence 4578999999999987435566789999964322 12223344421 346799999999999999999
Q ss_pred EEcC-CCCcccceeEEEEeecc
Q psy573 99 VKNV-AGTRESTDAVLRVLVKP 119 (216)
Q Consensus 99 ~~~~-~~~~~~~~~~l~v~~~p 119 (216)
+..- .|...+....|.|....
T Consensus 104 F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 104 FNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEecCCCCCceeEEEEEEEchh
Confidence 8754 34245666777776543
No 253
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.87 E-value=1.7e-08 Score=60.63 Aligned_cols=80 Identities=13% Similarity=0.241 Sum_probs=54.1
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCe--eEEeeCCEEeccccCceE---EEecCcEEEEcccCCCCCceEEEEE
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPT--LVWKKNGHPIDFENSKRL---RLVDGTNLAIQDSRKTDDGRYQCVV 99 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~--~~W~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~g~y~C~~ 99 (216)
..+.+.+....+.+|+.++|.|.+..+.|... +.||+++..+........ ......+|.+.....+|...|+|.+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A 81 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCET 81 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEE
Confidence 34566666667899999999999977788876 699999988843211100 0111235776655455555799999
Q ss_pred EcCCC
Q psy573 100 KNVAG 104 (216)
Q Consensus 100 ~~~~~ 104 (216)
.+...
T Consensus 82 ~l~l~ 86 (100)
T cd05755 82 ELDLR 86 (100)
T ss_pred EeccC
Confidence 97654
No 254
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.86 E-value=5.4e-08 Score=56.14 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=50.9
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEe----cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
+.|.|.+..+.|.+.+.||++++.+........... ..++|.|.....+|...|+|++.+..-........|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 689999978889999999999998843211100111 1236888777777777799999987643334455565543
No 255
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.86 E-value=3.6e-08 Score=61.09 Aligned_cols=70 Identities=23% Similarity=0.450 Sum_probs=52.0
Q ss_pred CCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------------CCCCCeeee-----cCCeEEEecCCCCCCe
Q psy573 124 GPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------------MPEDRMSVL-----PSRSLQLSDVRLEDGG 183 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------------~~~~~~~~~-----~~~~l~i~~~~~~d~g 183 (216)
.+....+.+|+++.|.|.+.+.+...+.|++.... ....+.... ....|.|.+++.+|+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG 83 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA 83 (109)
T ss_pred cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence 45667889999999999998777788999985321 011222222 1246999999999999
Q ss_pred EEEEEEEcCC
Q psy573 184 EYVCEAENAV 193 (216)
Q Consensus 184 ~y~C~~~n~~ 193 (216)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998754
No 256
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.86 E-value=6.4e-08 Score=57.95 Aligned_cols=65 Identities=20% Similarity=0.386 Sum_probs=44.7
Q ss_pred CcEEEEeeCCCCCCCCeeEEeeCCE----Ee-----------ccccCceEEEe----cCcEEEEcccCCCCCceEEEEEE
Q psy573 40 DTALLECGPPRGHPEPTLVWKKNGH----PI-----------DFENSKRLRLV----DGTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 40 ~~~~l~C~~~~~~~~~~~~W~~~~~----~~-----------~~~~~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
++++|.|.........++.|.+... .+ .....+|+... .+.+|.|.|++.+|+|.|.|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4789999874444556889988421 11 12233455443 25789999999999999999997
Q ss_pred cCCC
Q psy573 101 NVAG 104 (216)
Q Consensus 101 ~~~~ 104 (216)
....
T Consensus 81 t~P~ 84 (96)
T cd05889 81 TYPQ 84 (96)
T ss_pred eCCC
Confidence 6543
No 257
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.85 E-value=1.3e-08 Score=62.62 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=48.4
Q ss_pred EEecCCcEEEEeeCCCCC-CCCeeEEeeCCE-----Eec----------cccCceEEEe-----cCcEEEEcccCCCCCc
Q psy573 35 RVAAGDTALLECGPPRGH-PEPTLVWKKNGH-----PID----------FENSKRLRLV-----DGTNLAIQDSRKTDDG 93 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~-----~~~----------~~~~~~~~~~-----~~~~l~i~~~~~~d~g 93 (216)
.+.+|++++|.|.+ ... +...+.||+... .+. .....++... ...+|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTY-SGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEE-eCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57799999999988 443 567899998532 110 1122333332 2347999999999999
Q ss_pred eEEEEEEcCCC
Q psy573 94 RYQCVVKNVAG 104 (216)
Q Consensus 94 ~y~C~~~~~~~ 104 (216)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987553
No 258
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.84 E-value=7.1e-08 Score=59.43 Aligned_cols=75 Identities=27% Similarity=0.500 Sum_probs=54.1
Q ss_pred CCCcEEEEEEeCCCC------CcEEEEeeCCcc--------CC-----------CCCeeee----cCCeEEEecCCCCCC
Q psy573 132 AGSIIVFECSVGGDA------VLTVHWKRLGSA--------MP-----------EDRMSVL----PSRSLQLSDVRLEDG 182 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p------~~~i~W~~~~~~--------~~-----------~~~~~~~----~~~~l~i~~~~~~d~ 182 (216)
.|+++.|.|.....| ...+.|++.... +. ..+.... ....|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 478999999875542 356999985411 00 0122221 124699999999999
Q ss_pred eEEEEEEEcCCcceEEEEEEEEEe
Q psy573 183 GEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 183 g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
|.|.|.+.+..+.....+.|.|.+
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999998888888888864
No 259
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.84 E-value=1.4e-08 Score=63.35 Aligned_cols=74 Identities=22% Similarity=0.413 Sum_probs=50.4
Q ss_pred ecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-----Eec------------cccCceEEEec-----CcEEEEcc
Q psy573 29 VQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-----PID------------FENSKRLRLVD-----GTNLAIQD 86 (216)
Q Consensus 29 ~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-----~~~------------~~~~~~~~~~~-----~~~l~i~~ 86 (216)
..|..+.+.+|+++.|.|..........+.|++... .+. ....++..+.. +.+|.|.+
T Consensus 6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~ 85 (114)
T PF07686_consen 6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN 85 (114)
T ss_dssp EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence 345667899999999999983133556899998321 110 11122222221 23699999
Q ss_pred cCCCCCceEEEEEEcC
Q psy573 87 SRKTDDGRYQCVVKNV 102 (216)
Q Consensus 87 ~~~~d~g~y~C~~~~~ 102 (216)
++.+|+|.|.|.+...
T Consensus 86 l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 86 LQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESGGGEEEEEEEEEES
T ss_pred CCcCcCEEEEEEEEEC
Confidence 9999999999999876
No 260
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.84 E-value=4.3e-08 Score=61.44 Aligned_cols=76 Identities=16% Similarity=0.295 Sum_probs=52.6
Q ss_pred eEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCC--EE---e-------ccccCceEEEe-----cCcEEEEcccCC
Q psy573 27 FRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNG--HP---I-------DFENSKRLRLV-----DGTNLAIQDSRK 89 (216)
Q Consensus 27 ~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~--~~---~-------~~~~~~~~~~~-----~~~~l~i~~~~~ 89 (216)
+...+..+.+.+|++++|.|..........+.||+.. .. + .....+++... ...+|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 3456677889999999999987333345679999842 11 1 01223455443 124799999999
Q ss_pred CCCceEEEEEEcC
Q psy573 90 TDDGRYQCVVKNV 102 (216)
Q Consensus 90 ~d~g~y~C~~~~~ 102 (216)
+|+|.|.|.+...
T Consensus 82 ~Dsg~Y~C~~~~~ 94 (116)
T cd07706 82 EDSAKYFCALSTL 94 (116)
T ss_pred HHCEEEEEEEECC
Confidence 9999999999853
No 261
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.82 E-value=5.7e-08 Score=59.05 Aligned_cols=76 Identities=20% Similarity=0.379 Sum_probs=47.1
Q ss_pred CcEEEEeeCCCCC--CCCeeEEeeCCE-----Ee-----------ccccCceEEEe-----cCcEEEEcccCCCCCceEE
Q psy573 40 DTALLECGPPRGH--PEPTLVWKKNGH-----PI-----------DFENSKRLRLV-----DGTNLAIQDSRKTDDGRYQ 96 (216)
Q Consensus 40 ~~~~l~C~~~~~~--~~~~~~W~~~~~-----~~-----------~~~~~~~~~~~-----~~~~l~i~~~~~~d~g~y~ 96 (216)
.+++|+|...... ...++.|++... .+ .....++..+. .+.+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999873222 134899998421 11 01112344443 2458999999999999999
Q ss_pred EEEEcCCCCcccceeEEEE
Q psy573 97 CVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 97 C~~~~~~~~~~~~~~~l~v 115 (216)
|.+.+.........+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 9998743332355555554
No 262
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.81 E-value=8.6e-08 Score=58.39 Aligned_cols=72 Identities=25% Similarity=0.323 Sum_probs=49.0
Q ss_pred CCcEEEEEEeCCCC---CcEEEEeeCCc-----------cCC------C-CCeeee------cCCeEEEecCCCCCCeEE
Q psy573 133 GSIIVFECSVGGDA---VLTVHWKRLGS-----------AMP------E-DRMSVL------PSRSLQLSDVRLEDGGEY 185 (216)
Q Consensus 133 g~~~~l~C~~~~~p---~~~i~W~~~~~-----------~~~------~-~~~~~~------~~~~l~i~~~~~~d~g~y 185 (216)
|+++.|.|...+.. ...+.|++... ... . .+.... ...+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67899999975322 23578877542 110 0 122211 124699999999999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy573 186 VCEAENAVGKISASATLTV 204 (216)
Q Consensus 186 ~C~~~n~~~~~~~~~~l~v 204 (216)
+|.+.+..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777765
No 263
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.81 E-value=8.6e-08 Score=59.47 Aligned_cols=70 Identities=23% Similarity=0.441 Sum_probs=51.0
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCc--cC-----------------CCCCeeee----cCCeEEEecCCC
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGS--AM-----------------PEDRMSVL----PSRSLQLSDVRL 179 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~--~~-----------------~~~~~~~~----~~~~l~i~~~~~ 179 (216)
..|....+.+|+++.|.|.+.+ +.+.+.|+|... .+ ...+.... ....|.|.+++.
T Consensus 3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~ 81 (110)
T cd05899 3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP 81 (110)
T ss_pred ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence 3456778999999999999977 667899998542 11 01122221 235699999999
Q ss_pred CCCeEEEEEEEcCC
Q psy573 180 EDGGEYVCEAENAV 193 (216)
Q Consensus 180 ~d~g~y~C~~~n~~ 193 (216)
+|+|.|.|.+.+..
T Consensus 82 ~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 82 EDSAVYLCASSLGG 95 (110)
T ss_pred hhCEEEEEEeeCCC
Confidence 99999999998654
No 264
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.80 E-value=4.2e-08 Score=58.87 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=46.2
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccC-ceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENS-KRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
...+.+|++|+|.|... . ....+.|||++........ ..........+.|.+++.+|+|.|+|....
T Consensus 9 ~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 9 SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCccCCCCeEEEEEecC-C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 45688999999999762 2 4567999998765321110 000001124689999999999999999764
No 265
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.80 E-value=6.4e-08 Score=59.55 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=51.4
Q ss_pred CCcEEEEeeCCCC------CCCCeeEEeeCC-----EE------------eccccCceEEEec------CcEEEEcccCC
Q psy573 39 GDTALLECGPPRG------HPEPTLVWKKNG-----HP------------IDFENSKRLRLVD------GTNLAIQDSRK 89 (216)
Q Consensus 39 G~~~~l~C~~~~~------~~~~~~~W~~~~-----~~------------~~~~~~~~~~~~~------~~~l~i~~~~~ 89 (216)
|++++|+|..... ...+.+.|.+.. .. ......+|..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7899999985211 124689998741 11 1224455666543 45899999999
Q ss_pred CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573 90 TDDGRYQCVVKNVAGTRESTDAVLRVL 116 (216)
Q Consensus 90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~ 116 (216)
+|+|.|+|.+...... ....+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~-~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGIND-EQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 9999999999975432 3455666654
No 266
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.80 E-value=2.1e-07 Score=55.61 Aligned_cols=67 Identities=22% Similarity=0.464 Sum_probs=49.3
Q ss_pred CceeEeCCCcEEEEEEeCCCCCcEEEEeeCCcc---------CCCCCeeeec----CCeEEEecCCCCCCeEEEEEEEcC
Q psy573 126 KDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSA---------MPEDRMSVLP----SRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~---------~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
.+..+.+|+++.|.|.+.+.....+.|++-+.. ....++.... ..+|.|.+++.+|.|.|.|.+...
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~ 84 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD 84 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence 557888999999999998876666777765532 2233443322 235999999999999999999753
No 267
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.76 E-value=1.9e-07 Score=56.62 Aligned_cols=71 Identities=34% Similarity=0.665 Sum_probs=49.5
Q ss_pred CcEEEEEEeCCCC---CcEEEEeeCCcc---------------CC---CCCeeee----cCCeEEEecCCCCCCeEEEEE
Q psy573 134 SIIVFECSVGGDA---VLTVHWKRLGSA---------------MP---EDRMSVL----PSRSLQLSDVRLEDGGEYVCE 188 (216)
Q Consensus 134 ~~~~l~C~~~~~p---~~~i~W~~~~~~---------------~~---~~~~~~~----~~~~l~i~~~~~~d~g~y~C~ 188 (216)
+++.|.|.....+ ...+.|+|.... .. ..+.... ....|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999986543 446999986431 00 0111111 245799999999999999999
Q ss_pred EEc-CCcceEEEEEEEE
Q psy573 189 AEN-AVGKISASATLTV 204 (216)
Q Consensus 189 ~~n-~~~~~~~~~~l~v 204 (216)
+.. ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6688888888776
No 268
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.75 E-value=1.9e-07 Score=56.39 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=47.5
Q ss_pred cEEEEeeCCCCCCC---CeeEEeeCC--E--Ee-----------ccccCceEEEec----CcEEEEcccCCCCCceEEEE
Q psy573 41 TALLECGPPRGHPE---PTLVWKKNG--H--PI-----------DFENSKRLRLVD----GTNLAIQDSRKTDDGRYQCV 98 (216)
Q Consensus 41 ~~~l~C~~~~~~~~---~~~~W~~~~--~--~~-----------~~~~~~~~~~~~----~~~l~i~~~~~~d~g~y~C~ 98 (216)
.++|.|......+. .++.|.+.. . .+ .....+|+.... +++|.|.+++.+|+|.|.|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68899987322221 268998731 1 11 112334444432 47899999999999999999
Q ss_pred EEc-CCCCcccceeEEEE
Q psy573 99 VKN-VAGTRESTDAVLRV 115 (216)
Q Consensus 99 ~~~-~~~~~~~~~~~l~v 115 (216)
+.+ +.|. ....+.|.|
T Consensus 82 v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGN-RESQLNLTV 98 (99)
T ss_pred EEeCCCCC-eEEEEEEEE
Confidence 998 4443 455566655
No 269
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.75 E-value=2.3e-07 Score=57.75 Aligned_cols=71 Identities=17% Similarity=0.411 Sum_probs=49.1
Q ss_pred CCceeEeCCCcEEEEEEeCCC----CCcEEEEeeC---------------CccCC--C----CCeeee-----cCCeEEE
Q psy573 125 PKDTTVSAGSIIVFECSVGGD----AVLTVHWKRL---------------GSAMP--E----DRMSVL-----PSRSLQL 174 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~----p~~~i~W~~~---------------~~~~~--~----~~~~~~-----~~~~l~i 174 (216)
+....+..|+.+.|.|..... +...+.|.+. +.... . ++.... .+.++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 355678899999999998543 3457999442 22211 0 122211 2357999
Q ss_pred ecCCCCCCeEEEEEEEcCCcc
Q psy573 175 SDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 175 ~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.+++.+|.|.|+|.+.|..+.
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred ccCCcccCEEEEEEEEcCCCc
Confidence 999999999999999998764
No 270
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.75 E-value=1.1e-07 Score=59.62 Aligned_cols=72 Identities=15% Similarity=0.286 Sum_probs=50.4
Q ss_pred ecccceEEecCCcEEEEeeCCCC--CCCCeeEEeeCC--EE---e-c-----------cccCceEEEe-----cCcEEEE
Q psy573 29 VQPKSQRVAAGDTALLECGPPRG--HPEPTLVWKKNG--HP---I-D-----------FENSKRLRLV-----DGTNLAI 84 (216)
Q Consensus 29 ~~~~~~~~~~G~~~~l~C~~~~~--~~~~~~~W~~~~--~~---~-~-----------~~~~~~~~~~-----~~~~l~i 84 (216)
..|..+.+.+|++++|.|.+ .+ .+...+.||+.. .. + . .....++... ....|.|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 3 QPQLSITREESKSVTISCKV-SGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 35667788999999999987 34 466789999942 11 1 0 0112344432 1247999
Q ss_pred cccCCCCCceEEEEEEc
Q psy573 85 QDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 85 ~~~~~~d~g~y~C~~~~ 101 (216)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999864
No 271
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.74 E-value=2.3e-07 Score=57.33 Aligned_cols=78 Identities=22% Similarity=0.311 Sum_probs=51.7
Q ss_pred CCcEEEEeeCCCC----------CCCCeeEEeeC-----CE-----Ee----------ccccCceEEEe------cCcEE
Q psy573 39 GDTALLECGPPRG----------HPEPTLVWKKN-----GH-----PI----------DFENSKRLRLV------DGTNL 82 (216)
Q Consensus 39 G~~~~l~C~~~~~----------~~~~~~~W~~~-----~~-----~~----------~~~~~~~~~~~------~~~~l 82 (216)
|.+++|+|..... .....|.|++- +. .+ .....+|..+. .+.+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 6789999987311 12348999874 11 11 12344555553 35689
Q ss_pred EEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573 83 AIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 83 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
.|.+++.+|+|.|.|.+....... ...+.|.|.+
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~G 115 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVSG 115 (117)
T ss_pred EEcccccccCEEEEEEEEECCccc-EEEEEEEEEE
Confidence 999999999999999998765443 4556666653
No 272
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.73 E-value=2.9e-07 Score=56.94 Aligned_cols=75 Identities=23% Similarity=0.416 Sum_probs=53.3
Q ss_pred CCCcEEEEEEeCCCC----------CcEEEEeeCC--ccC--------------CC-CCeeee------cCCeEEEecCC
Q psy573 132 AGSIIVFECSVGGDA----------VLTVHWKRLG--SAM--------------PE-DRMSVL------PSRSLQLSDVR 178 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p----------~~~i~W~~~~--~~~--------------~~-~~~~~~------~~~~l~i~~~~ 178 (216)
.|+++.|.|.....+ ...+.|++.. ... .. ++.... ....|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999985443 2569999852 110 00 122221 22569999999
Q ss_pred CCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 179 LEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 179 ~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
.+|+|.|.|.+..........+.|.|.+
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777788888888765
No 273
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.73 E-value=1e-07 Score=57.83 Aligned_cols=67 Identities=18% Similarity=0.330 Sum_probs=45.0
Q ss_pred EEecCCcEEEEeeCCCCC--CCCeeEEeeCCE--E---ec-------cccCceEEEec---CcEEEEcccCCCCCceEEE
Q psy573 35 RVAAGDTALLECGPPRGH--PEPTLVWKKNGH--P---ID-------FENSKRLRLVD---GTNLAIQDSRKTDDGRYQC 97 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~--~~~~~~W~~~~~--~---~~-------~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C 97 (216)
.+.+|++++|.|.+ ... ....+.||+... . +. .....++.... ...|+|.+++.+|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTG-SSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEE-cCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEE
Confidence 46799999999987 333 456799998432 1 10 01122333322 2369999999999999999
Q ss_pred EEEcC
Q psy573 98 VVKNV 102 (216)
Q Consensus 98 ~~~~~ 102 (216)
.+.+.
T Consensus 81 ~~~~~ 85 (98)
T cd04984 81 QVWDS 85 (98)
T ss_pred EEccC
Confidence 98653
No 274
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.71 E-value=1.4e-07 Score=57.27 Aligned_cols=70 Identities=24% Similarity=0.364 Sum_probs=48.1
Q ss_pred eEEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-----e------ccccCceEEEec-----CcEEEEcccCCCCCceEEE
Q psy573 34 QRVAAGDTALLECGPPRGHPEPTLVWKKNGHP-----I------DFENSKRLRLVD-----GTNLAIQDSRKTDDGRYQC 97 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-----~------~~~~~~~~~~~~-----~~~l~i~~~~~~d~g~y~C 97 (216)
+.+.+|++++|.|..........+.||+.... + .....+++.+.. ...|+|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 46789999999998733335567899985321 1 012233444431 2479999999999999999
Q ss_pred EEEcCC
Q psy573 98 VVKNVA 103 (216)
Q Consensus 98 ~~~~~~ 103 (216)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 987643
No 275
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.64 E-value=2.4e-07 Score=55.94 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=51.0
Q ss_pred eCCCcEEEEEEeCC-CCCcEEEEeeCCccCC--------------C----CCeeeec-CCeEEEecCCCCCCeEEEEEEE
Q psy573 131 SAGSIIVFECSVGG-DAVLTVHWKRLGSAMP--------------E----DRMSVLP-SRSLQLSDVRLEDGGEYVCEAE 190 (216)
Q Consensus 131 ~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~~--------------~----~~~~~~~-~~~l~i~~~~~~d~g~y~C~~~ 190 (216)
..|++|+|.|.... .....+.|++....+. . .+..... +..|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 36899999998765 4455799997532110 0 1122222 3679999999999999999999
Q ss_pred cCCcc-eEEEEEEEE
Q psy573 191 NAVGK-ISASATLTV 204 (216)
Q Consensus 191 n~~~~-~~~~~~l~v 204 (216)
+..|. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 88765 455565554
No 276
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.62 E-value=5.1e-07 Score=55.55 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=32.6
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
.+|.|.+++.+|+|.|.|.+..........+.|.|.+
T Consensus 72 asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 72 ASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred EEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 4799999999999999999999777788888888864
No 277
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.62 E-value=4.1e-07 Score=57.22 Aligned_cols=73 Identities=26% Similarity=0.352 Sum_probs=49.1
Q ss_pred cccceEEecCCcEEEEeeCCCCC-----CCCeeEEeeCCEE------ec---------cccCceEEEe-----cCcEEEE
Q psy573 30 QPKSQRVAAGDTALLECGPPRGH-----PEPTLVWKKNGHP------ID---------FENSKRLRLV-----DGTNLAI 84 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~-----~~~~~~W~~~~~~------~~---------~~~~~~~~~~-----~~~~l~i 84 (216)
.|..+.+.+|++|+|+|...... ....+.||+.... +. ....+|+... .+.+|+|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 46678899999999999762111 1346899985311 10 1122354442 1247999
Q ss_pred cccCCCCCceEEEEEEcC
Q psy573 85 QDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 85 ~~~~~~d~g~y~C~~~~~ 102 (216)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 278
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.61 E-value=1.6e-06 Score=53.66 Aligned_cols=38 Identities=26% Similarity=0.507 Sum_probs=33.7
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
+.+|.|.+++.+|+|.|.|.+.+........+.|.|.+
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 35799999999999999999999988888888888864
No 279
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.60 E-value=1.6e-06 Score=50.08 Aligned_cols=76 Identities=14% Similarity=0.286 Sum_probs=54.1
Q ss_pred eeEeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
..+..|++++|.|.....+.| .+.|..-+...- ........+|.+..+...|+|.++|.+....-.....+.+.|.
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~--~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK--QILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc--eeccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 467789999999999665444 899986443311 1112345789999999999999999998665555556666554
No 280
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.60 E-value=3.4e-07 Score=56.25 Aligned_cols=66 Identities=26% Similarity=0.469 Sum_probs=47.4
Q ss_pred eEeCCCcEEEEEEeCCC-CCcEEEEeeCCcc--C----------------CCCCeeee-----cCCeEEEecCCCCCCeE
Q psy573 129 TVSAGSIIVFECSVGGD-AVLTVHWKRLGSA--M----------------PEDRMSVL-----PSRSLQLSDVRLEDGGE 184 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~--~----------------~~~~~~~~-----~~~~l~i~~~~~~d~g~ 184 (216)
.+.+|+++.|.|..... +...+.|++.... . ...+.... ....|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 46789999999999765 6678999985431 0 01122111 12369999999999999
Q ss_pred EEEEEEcCCc
Q psy573 185 YVCEAENAVG 194 (216)
Q Consensus 185 y~C~~~n~~~ 194 (216)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987664
No 281
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.58 E-value=1.2e-06 Score=50.66 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=47.4
Q ss_pred EEEEEEeCC-CCCcEEEEeeCCccCCCCCee--ee-----cCCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573 136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMS--VL-----PSRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ 205 (216)
Q Consensus 136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~--~~-----~~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~ 205 (216)
+.|.|.+.+ .|.+.|.|++++..+...... .. ..+.|.+..-..+|+..|+|.+.|..-. ...+..|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 679999855 588899999999888654221 11 1245777655566666999999997643 4445555554
No 282
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.58 E-value=7e-07 Score=53.57 Aligned_cols=63 Identities=17% Similarity=0.229 Sum_probs=45.9
Q ss_pred ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCe----eeecCCeEEEecCCCCCCeEEEEEEE
Q psy573 127 DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRM----SVLPSRSLQLSDVRLEDGGEYVCEAE 190 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~y~C~~~ 190 (216)
...+..|++++|.|.... ....+.|+|++........ .......+.|..++.+|+|.|.|...
T Consensus 9 ~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 9 SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 457889999999998754 4457999998875432110 01112468999999999999999975
No 283
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.57 E-value=1.2e-06 Score=50.54 Aligned_cols=64 Identities=19% Similarity=0.350 Sum_probs=47.3
Q ss_pred eEEecCCcEEEEeeCCCC-CCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcC
Q psy573 34 QRVAAGDTALLECGPPRG-HPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
..+..|++++|+|..+.+ .|.+.+.|...++..- .....+..+|.+.++...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~-----~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK-----QILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc-----eeccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 367899999999998433 3455999988655431 111134568999999999999999999764
No 284
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.57 E-value=8.6e-07 Score=54.57 Aligned_cols=71 Identities=23% Similarity=0.351 Sum_probs=49.5
Q ss_pred EeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCc--cC-----------C--CCCeeeec---CCeEEEecCCCCCC
Q psy573 122 IRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGS--AM-----------P--EDRMSVLP---SRSLQLSDVRLEDG 182 (216)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~--~~-----------~--~~~~~~~~---~~~l~i~~~~~~d~ 182 (216)
...|....+.+|+++.|.|.+.+.. ...+.|++... .. . ..+..... ...|.|.+++.+|+
T Consensus 4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds 83 (106)
T cd04980 4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA 83 (106)
T ss_pred EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence 3456677889999999999987654 56799997531 10 0 01222211 13599999999999
Q ss_pred eEEEEEEEcC
Q psy573 183 GEYVCEAENA 192 (216)
Q Consensus 183 g~y~C~~~n~ 192 (216)
|.|.|.+.+.
T Consensus 84 g~Y~Ca~~~~ 93 (106)
T cd04980 84 AVYYCQQYGT 93 (106)
T ss_pred EEEEEEEeCC
Confidence 9999998654
No 285
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.56 E-value=1.7e-06 Score=52.53 Aligned_cols=70 Identities=24% Similarity=0.388 Sum_probs=47.1
Q ss_pred cEEEEEEeCCCC---CcEEEEeeCCcc-----C-----------CC---CCeeee-----cCCeEEEecCCCCCCeEEEE
Q psy573 135 IIVFECSVGGDA---VLTVHWKRLGSA-----M-----------PE---DRMSVL-----PSRSLQLSDVRLEDGGEYVC 187 (216)
Q Consensus 135 ~~~l~C~~~~~p---~~~i~W~~~~~~-----~-----------~~---~~~~~~-----~~~~l~i~~~~~~d~g~y~C 187 (216)
++.|.|...... ...+.|++.... + .. ++.... .+..|.|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 578999875433 336889884211 0 00 122221 23579999999999999999
Q ss_pred EEEc-CCcceEEEEEEEE
Q psy573 188 EAEN-AVGKISASATLTV 204 (216)
Q Consensus 188 ~~~n-~~~~~~~~~~l~v 204 (216)
.+.+ +.|+.+..+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9997 6677777777766
No 286
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.56 E-value=1.5e-06 Score=56.30 Aligned_cols=90 Identities=14% Similarity=0.220 Sum_probs=56.3
Q ss_pred hhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEecc-----ccC--ceEEEecC-----
Q psy573 13 EEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDF-----ENS--KRLRLVDG----- 79 (216)
Q Consensus 13 ~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~-----~~~--~~~~~~~~----- 79 (216)
+..++|.|.. +|.+.+.+......+|+.+.|.|.+....|. .++.|++++..... ... .......+
T Consensus 28 ~~~~~l~v~~-~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~ 106 (139)
T cd05771 28 QQIIQLSVSE-PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSL 106 (139)
T ss_pred eeEEEEEEec-CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEE
Confidence 4556677754 5777777766666689999999999444564 58999998754211 000 01111222
Q ss_pred -cEEEEcccCCCCCceEEEEEEcCC
Q psy573 80 -TNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 80 -~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+.|.+.....++.+.|.|.+....
T Consensus 107 ~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 107 SSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EEEEEecCCccCCCCEEEEEEEcCC
Confidence 246666555555678999998654
No 287
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.55 E-value=5.9e-07 Score=55.89 Aligned_cols=81 Identities=23% Similarity=0.449 Sum_probs=54.2
Q ss_pred CCCceeEeCCCcEEEEEEeC-CCCCcEEEEeeCCcc-----CC---------------CCCeeeec-----CCeEEEecC
Q psy573 124 GPKDTTVSAGSIIVFECSVG-GDAVLTVHWKRLGSA-----MP---------------EDRMSVLP-----SRSLQLSDV 177 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~-----~~---------------~~~~~~~~-----~~~l~i~~~ 177 (216)
.+....+.+|+++.|.|... ......+.|++.... +. ..+..... ..+|.|.++
T Consensus 7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 34667888999999999998 455668999984331 00 01111111 135999999
Q ss_pred CCCCCeEEEEEEEcC-CcceEEEEEEEE
Q psy573 178 RLEDGGEYVCEAENA-VGKISASATLTV 204 (216)
Q Consensus 178 ~~~d~g~y~C~~~n~-~~~~~~~~~l~v 204 (216)
+.+|+|.|.|.+... .......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999876 233444455543
No 288
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.55 E-value=1.6e-06 Score=50.68 Aligned_cols=63 Identities=17% Similarity=0.360 Sum_probs=42.3
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC-------cEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG-------TNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
+.|.|.+..+.|...+.|+++|..+..... ......+ +.|.+.....+|...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999977778899999999988743221 1111212 23555455566667899999986643
No 289
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.54 E-value=6.5e-07 Score=55.18 Aligned_cols=67 Identities=16% Similarity=0.312 Sum_probs=43.7
Q ss_pred EEecCCcEEEEeeCCCCCCCCeeEEeeCCEE---------ec-c----------ccCceEEE--ec---CcEEEEcccCC
Q psy573 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHP---------ID-F----------ENSKRLRL--VD---GTNLAIQDSRK 89 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~---------~~-~----------~~~~~~~~--~~---~~~l~i~~~~~ 89 (216)
.+.+|++++|.|.+........+.||+.... +. . ....++.. .. ...|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5789999999998732233457999984221 00 0 00123332 11 13599999999
Q ss_pred CCCceEEEEEEc
Q psy573 90 TDDGRYQCVVKN 101 (216)
Q Consensus 90 ~d~g~y~C~~~~ 101 (216)
+|+|.|.|....
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999753
No 290
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.53 E-value=3.4e-07 Score=55.17 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=46.5
Q ss_pred eCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe--e--eecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 131 SAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM--S--VLPS------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 131 ~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~--~--~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
..|+.+.|.|.+.+. | ...+.|++++..+..... . ...+ +.|.+......+.+.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 468899999999887 5 368999999987754432 1 1122 23555555566899999999998764
No 291
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.53 E-value=1.3e-06 Score=54.56 Aligned_cols=71 Identities=21% Similarity=0.481 Sum_probs=47.6
Q ss_pred CCceeEeCCCcEEEEEEeCCCC----CcEEEEeeC---Ccc---C----------CC----CCeeee-----cCCeEEEe
Q psy573 125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRL---GSA---M----------PE----DRMSVL-----PSRSLQLS 175 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~---~~~---~----------~~----~~~~~~-----~~~~l~i~ 175 (216)
+....+..|+++.|.|.....+ ...+.|++. +.. + .. .+.... .+..|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556888999999999974332 246999752 111 0 00 111111 23469999
Q ss_pred cCCCCCCeEEEEEEEcCCcc
Q psy573 176 DVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 176 ~~~~~d~g~y~C~~~n~~~~ 195 (216)
+++.+|+|.|.|.+.|..+.
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 85 QLQPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred eCChhhCEEEEEEEEeCCCC
Confidence 99999999999999987664
No 292
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.52 E-value=2.8e-06 Score=51.34 Aligned_cols=35 Identities=37% Similarity=0.648 Sum_probs=31.4
Q ss_pred CeEEEecCCCCCCeEEEEEEEc-CCcceEEEEEEEE
Q psy573 170 RSLQLSDVRLEDGGEYVCEAEN-AVGKISASATLTV 204 (216)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~~~n-~~~~~~~~~~l~v 204 (216)
.+|.|.+++.+|+|.|.|.+.+ +.|+.+..+.|.|
T Consensus 63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 6799999999999999999999 6788888888876
No 293
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.51 E-value=1.3e-06 Score=52.54 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=49.9
Q ss_pred EeCCCceeEeCCCcEEEEEEeCC-CCCcE--EEEeeCCccCCCCCeee------ecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 122 IRGPKDTTVSAGSIIVFECSVGG-DAVLT--VHWKRLGSAMPEDRMSV------LPSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--i~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
.+.+....+.+|+.++|.|.+.+ .|.+. |.|++++..+....... ....++.+..-+.+|...|+|.+.+.
T Consensus 5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~ 84 (100)
T cd05755 5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD 84 (100)
T ss_pred EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence 33444556789999999999965 56665 79999998875432221 12245666544444455999999887
Q ss_pred Ccce
Q psy573 193 VGKI 196 (216)
Q Consensus 193 ~~~~ 196 (216)
....
T Consensus 85 l~~~ 88 (100)
T cd05755 85 LRPE 88 (100)
T ss_pred cCcc
Confidence 6553
No 294
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.51 E-value=1.4e-06 Score=50.91 Aligned_cols=60 Identities=18% Similarity=0.410 Sum_probs=40.6
Q ss_pred EEEEEEeCCC-CCcEEEEeeCCccCCCCCeeee--cC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 136 IVFECSVGGD-AVLTVHWKRLGSAMPEDRMSVL--PS------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 136 ~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~~--~~------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
+.|.|.+.+. |.+.+.|++++..+........ .+ +.|.+.....++++.|+|.|.|....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899999654 8889999999987753321111 11 23444444555677999999988654
No 295
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.50 E-value=2.1e-06 Score=50.15 Aligned_cols=60 Identities=18% Similarity=0.392 Sum_probs=40.9
Q ss_pred EEEEEEeCCC-CCcEEEEeeCCccCCCCCeee--ecC-------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 136 IVFECSVGGD-AVLTVHWKRLGSAMPEDRMSV--LPS-------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 136 ~~l~C~~~~~-p~~~i~W~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
+.|.|.+.+. |.+.|+|++++..+....... ... +.|.+.....++...|+|.+.|....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6799999665 888999999998775432111 111 23444444555677999999998754
No 296
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.49 E-value=3.9e-06 Score=55.52 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=58.1
Q ss_pred eeEeCCCcEEEEEEeC-CCCCcEEEEeeCCccCC-------------CCCeeee----cCCeEEEecCCCCCCeEEEEEE
Q psy573 128 TTVSAGSIIVFECSVG-GDAVLTVHWKRLGSAMP-------------EDRMSVL----PSRSLQLSDVRLEDGGEYVCEA 189 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~-~~p~~~i~W~~~~~~~~-------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~ 189 (216)
..+.+|+++.|.|... +...+.+.|.|....+. .++.... ....|.|.+++.+|+|.|.|.+
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 4778999999999974 55677899998643221 0122211 3467999999999999999998
Q ss_pred Ec-CCc-ceEEEEEEEEEec
Q psy573 190 EN-AVG-KISASATLTVQSK 207 (216)
Q Consensus 190 ~n-~~~-~~~~~~~l~v~~~ 207 (216)
.. +.| +.+..+-|.|...
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EecCCCCCceeEEEEEEEch
Confidence 64 456 6777888888754
No 297
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.48 E-value=3.8e-06 Score=52.58 Aligned_cols=71 Identities=18% Similarity=0.494 Sum_probs=47.7
Q ss_pred CCceeEeCCCcEEEEEEeCCCC----CcEEEEeeCCcc------C-----------CCC----Ceeee-----cCCeEEE
Q psy573 125 PKDTTVSAGSIIVFECSVGGDA----VLTVHWKRLGSA------M-----------PED----RMSVL-----PSRSLQL 174 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p----~~~i~W~~~~~~------~-----------~~~----~~~~~-----~~~~l~i 174 (216)
|....+..|+.+.|.|...... ...+.|++.... + ... +.... .+..|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4566788999999999875432 246999763210 0 011 11111 1246999
Q ss_pred ecCCCCCCeEEEEEEEcCCcc
Q psy573 175 SDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 175 ~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.+++.+|+|.|.|.+.|....
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred eeCCcccCEEEEEEEEeCCCC
Confidence 999999999999999987653
No 298
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.48 E-value=1.2e-06 Score=54.89 Aligned_cols=69 Identities=19% Similarity=0.411 Sum_probs=49.0
Q ss_pred CCCceeEeCCCcEEEEEEeCC--CCCcEEEEeeCC--ccC------------------CCCCeeee-----cCCeEEEec
Q psy573 124 GPKDTTVSAGSIIVFECSVGG--DAVLTVHWKRLG--SAM------------------PEDRMSVL-----PSRSLQLSD 176 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~--~p~~~i~W~~~~--~~~------------------~~~~~~~~-----~~~~l~i~~ 176 (216)
.+....+.+|+++.|.|.+.+ .+.+.+.|++.. ..+ ...+.... ....|.|.+
T Consensus 4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 83 (116)
T cd04982 4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN 83 (116)
T ss_pred cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence 345667889999999999876 567789999852 111 01222222 124699999
Q ss_pred CCCCCCeEEEEEEEcC
Q psy573 177 VRLEDGGEYVCEAENA 192 (216)
Q Consensus 177 ~~~~d~g~y~C~~~n~ 192 (216)
++.+|+|.|.|.+...
T Consensus 84 ~~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 84 LEKEDSATYYCAYWES 99 (116)
T ss_pred CCHHHCEEEEEEEecC
Confidence 9999999999998643
No 299
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.48 E-value=3.2e-06 Score=51.10 Aligned_cols=72 Identities=32% Similarity=0.511 Sum_probs=48.8
Q ss_pred CCcEEEEEEeCCCCC-cEEEEeeCCccCC------------------CCCeee----ecCCeEEEecCCCCCCeEEEEEE
Q psy573 133 GSIIVFECSVGGDAV-LTVHWKRLGSAMP------------------EDRMSV----LPSRSLQLSDVRLEDGGEYVCEA 189 (216)
Q Consensus 133 g~~~~l~C~~~~~p~-~~i~W~~~~~~~~------------------~~~~~~----~~~~~l~i~~~~~~d~g~y~C~~ 189 (216)
|++++|.|....... -.+.|++.....+ ..+... .....|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 688999998654433 3599988532100 001111 02356999999999999999998
Q ss_pred E-cCCcceEEEEEEEE
Q psy573 190 E-NAVGKISASATLTV 204 (216)
Q Consensus 190 ~-n~~~~~~~~~~l~v 204 (216)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 55677777887776
No 300
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.48 E-value=2.1e-06 Score=50.16 Aligned_cols=63 Identities=22% Similarity=0.323 Sum_probs=41.1
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
+.|.|.+..+.|.+.+.||++++.+.... .......++ .|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999996667889999999998874221 111111222 3555455555667899999986543
No 301
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.45 E-value=8.5e-06 Score=48.81 Aligned_cols=70 Identities=23% Similarity=0.517 Sum_probs=48.2
Q ss_pred cEEEEEEeCCCC-CcEEEEeeCCcc----CC--------------CCCeeee----cCCeEEEecCCCCCCeEEEEEEE-
Q psy573 135 IIVFECSVGGDA-VLTVHWKRLGSA----MP--------------EDRMSVL----PSRSLQLSDVRLEDGGEYVCEAE- 190 (216)
Q Consensus 135 ~~~l~C~~~~~p-~~~i~W~~~~~~----~~--------------~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~- 190 (216)
++.|.|.....+ ...+.|.|.... +. .++.... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 2 ~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~t 81 (96)
T cd05887 2 NVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAVT 81 (96)
T ss_pred CEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEEe
Confidence 578999975433 346899874210 00 0122221 24679999999999999999975
Q ss_pred cCCcceEEEEEEEE
Q psy573 191 NAVGKISASATLTV 204 (216)
Q Consensus 191 n~~~~~~~~~~l~v 204 (216)
.+.|+...++.|.|
T Consensus 82 fP~G~~~~~~~l~~ 95 (96)
T cd05887 82 FPLGNTQSSTTVTV 95 (96)
T ss_pred CCCCCeeEEEEEEE
Confidence 56788888888876
No 302
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.45 E-value=3e-06 Score=53.09 Aligned_cols=72 Identities=15% Similarity=0.221 Sum_probs=47.5
Q ss_pred cccceEEecCCcEEEEeeCCCCC-CCCeeEEeeCCE---E--e------------ccccCceEEEe--c-C--cEEEEcc
Q psy573 30 QPKSQRVAAGDTALLECGPPRGH-PEPTLVWKKNGH---P--I------------DFENSKRLRLV--D-G--TNLAIQD 86 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~-~~~~~~W~~~~~---~--~------------~~~~~~~~~~~--~-~--~~l~i~~ 86 (216)
.|....+.+|++++|.|...... ....+.||+... + + .....+++... . . ..|+|.+
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~ 82 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS 82 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence 46677899999999999762221 245689998421 1 1 00112344332 1 1 2699999
Q ss_pred cCCCCCceEEEEEEc
Q psy573 87 SRKTDDGRYQCVVKN 101 (216)
Q Consensus 87 ~~~~d~g~y~C~~~~ 101 (216)
++.+|+|.|.|....
T Consensus 83 ~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 83 LTPEDTAVYYCARGL 97 (117)
T ss_pred CCHHHCEEEEEEEEc
Confidence 999999999998764
No 303
>KOG3515|consensus
Probab=98.43 E-value=1.2e-06 Score=69.98 Aligned_cols=192 Identities=17% Similarity=0.184 Sum_probs=117.4
Q ss_pred eeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEec-----CcEEEEcccCCCC
Q psy573 17 KLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVD-----GTNLAIQDSRKTD 91 (216)
Q Consensus 17 ~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d 91 (216)
-+.++..+....+.+....+..|....+.|....+.|...+.||++................ -..+.+......|
T Consensus 293 ~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~ 372 (741)
T KOG3515|consen 293 ITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQD 372 (741)
T ss_pred eeecccccccccccCcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhc
Confidence 34444444555566666668899999999987677788899999965543211110000011 1246667778889
Q ss_pred CceEEEEEEcCCCCcc-cceeEEEEeecceEEeC-CCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCC---Cee
Q psy573 92 DGRYQCVVKNVAGTRE-STDAVLRVLVKPYIIRG-PKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPED---RMS 165 (216)
Q Consensus 92 ~g~y~C~~~~~~~~~~-~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~---~~~ 165 (216)
.|.|+|.+.+...... +..+.+.+..+|.+... .......+++.....-.+.+.| .+++.|.+.+..+... ...
T Consensus 373 ~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~ 452 (741)
T KOG3515|consen 373 GGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVR 452 (741)
T ss_pred CceEEccccccccccccccceeccccCCchhhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEE
Confidence 9999999988664332 23344555555544322 2222333444444443443554 5679999887665322 112
Q ss_pred eecC-CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecc
Q psy573 166 VLPS-RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKY 208 (216)
Q Consensus 166 ~~~~-~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p 208 (216)
.... ......++...|.|.|.|.+.|..|.....+.+.+...|
T Consensus 453 v~~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp 496 (741)
T KOG3515|consen 453 VGAGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSP 496 (741)
T ss_pred eeccccccccceeeeccCCcceeeeccCCCceeeEEeeccccCC
Confidence 2222 233356688899999999999999988877776666544
No 304
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.40 E-value=2.5e-06 Score=49.80 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=41.4
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
++|.|.+..+.|...+.|+++|..+............+ ..|.+......+...|+|.+.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence 68999997778889999999999873221111111111 2466665556666779999987653
No 305
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.34 E-value=4.4e-06 Score=50.59 Aligned_cols=64 Identities=27% Similarity=0.442 Sum_probs=44.2
Q ss_pred eEeCCCcEEEEEEeCCC--CCcEEEEeeCCc--cCC-------------CCCeeee---cCCeEEEecCCCCCCeEEEEE
Q psy573 129 TVSAGSIIVFECSVGGD--AVLTVHWKRLGS--AMP-------------EDRMSVL---PSRSLQLSDVRLEDGGEYVCE 188 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~--p~~~i~W~~~~~--~~~-------------~~~~~~~---~~~~l~i~~~~~~d~g~y~C~ 188 (216)
.+.+|+++.|.|..... ....+.|++... .+. ..+.... ....|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 46789999999998654 455699987432 110 1122221 123599999999999999999
Q ss_pred EEcC
Q psy573 189 AENA 192 (216)
Q Consensus 189 ~~n~ 192 (216)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8753
No 306
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.32 E-value=1.7e-06 Score=52.06 Aligned_cols=68 Identities=22% Similarity=0.312 Sum_probs=45.8
Q ss_pred ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573 37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
..|+.+.|.|.+....| ...+.|+++|..+..... .......++ .|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 46899999999843335 468999999988743322 111112222 366666666699999999987654
No 307
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.29 E-value=5.5e-06 Score=51.13 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=45.1
Q ss_pred EecccceEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEEecC-cE------EEEcccCCCCCc-eEEEE
Q psy573 28 RVQPKSQRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRLVDG-TN------LAIQDSRKTDDG-RYQCV 98 (216)
Q Consensus 28 ~~~~~~~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~~~~-~~------l~i~~~~~~d~g-~y~C~ 98 (216)
.+.+.......|+.++|.|.+....|. ..+.|++||+.+..... ......+ ++ |.+.. ...|.| .|.|.
T Consensus 10 ~i~~~~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~-~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~ 87 (111)
T cd05772 10 VVSGPSGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQP-NITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCE 87 (111)
T ss_pred EeCCchhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECccccc-ceeeCCCCCcEEEEEEEEEEC-ccccccCceEEE
Confidence 344344455678899999999555664 69999999998743211 1111122 12 33333 344444 49999
Q ss_pred EEcCC
Q psy573 99 VKNVA 103 (216)
Q Consensus 99 ~~~~~ 103 (216)
+....
T Consensus 88 V~H~~ 92 (111)
T cd05772 88 VQHRT 92 (111)
T ss_pred EEeCC
Confidence 98754
No 308
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.29 E-value=8.7e-06 Score=47.52 Aligned_cols=60 Identities=15% Similarity=0.359 Sum_probs=41.0
Q ss_pred EEEEEEeCC-CCCcEEEEeeCCccCCCCCeee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 136 IVFECSVGG-DAVLTVHWKRLGSAMPEDRMSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 136 ~~l~C~~~~-~p~~~i~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
+.|.|.+.+ .|...++|++++..+....... ...+.|.+..-..++...|+|.|.|....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 579999976 5678899999998875432111 11134555555566677999999987654
No 309
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.27 E-value=7.7e-06 Score=51.20 Aligned_cols=70 Identities=26% Similarity=0.463 Sum_probs=48.7
Q ss_pred eCCCceeEeCCCcEEEEEEeCCC-CCcEEEEeeCCc--cC-------------CCCCeeee-----cCCeEEEecCCCCC
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGD-AVLTVHWKRLGS--AM-------------PEDRMSVL-----PSRSLQLSDVRLED 181 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~--~~-------------~~~~~~~~-----~~~~l~i~~~~~~d 181 (216)
..+....+..|+++.|.|..... ....+.|++... .+ ..++.... ....|.|.+++.+|
T Consensus 4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 44566788999999999998653 456799998421 10 01222222 12469999999999
Q ss_pred CeEEEEEEEcC
Q psy573 182 GGEYVCEAENA 192 (216)
Q Consensus 182 ~g~y~C~~~n~ 192 (216)
+|.|.|.+...
T Consensus 84 sg~Y~C~~~~~ 94 (116)
T cd07706 84 SAKYFCALSTL 94 (116)
T ss_pred CEEEEEEEECC
Confidence 99999999853
No 310
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.25 E-value=4.8e-06 Score=49.47 Aligned_cols=64 Identities=22% Similarity=0.386 Sum_probs=42.5
Q ss_pred CCcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcce
Q psy573 133 GSIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGKI 196 (216)
Q Consensus 133 g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~ 196 (216)
|+.+.+.|.+ .++|.+.|.|+.++..+....... ...+.|.+..-..++...++|.+.|.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 6799999976 667899999999987762111110 111346665544456779999999987554
No 311
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.24 E-value=1.5e-05 Score=48.29 Aligned_cols=65 Identities=26% Similarity=0.383 Sum_probs=45.4
Q ss_pred eEeCCCcEEEEEEeCC-CCCcEEEEeeCCccC--------------CCCCeeee-----cCCeEEEecCCCCCCeEEEEE
Q psy573 129 TVSAGSIIVFECSVGG-DAVLTVHWKRLGSAM--------------PEDRMSVL-----PSRSLQLSDVRLEDGGEYVCE 188 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~~--------------~~~~~~~~-----~~~~l~i~~~~~~d~g~y~C~ 188 (216)
.+.+|+++.|.|.... .....+.|++..... ...+.... ....|.|.+++.+|+|.|.|.
T Consensus 3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 82 (98)
T cd05716 3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG 82 (98)
T ss_pred EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence 5678999999999764 345678999864211 01222222 113699999999999999999
Q ss_pred EEcCC
Q psy573 189 AENAV 193 (216)
Q Consensus 189 ~~n~~ 193 (216)
+....
T Consensus 83 ~~~~~ 87 (98)
T cd05716 83 VGDDG 87 (98)
T ss_pred cccCC
Confidence 87654
No 312
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.22 E-value=6e-06 Score=50.56 Aligned_cols=65 Identities=20% Similarity=0.338 Sum_probs=43.1
Q ss_pred EEecCCcEEEEeeCCCCCCCCeeEEeeCCEE-------ec-ccc------------CceEEEe---cCcEEEEcccCCCC
Q psy573 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHP-------ID-FEN------------SKRLRLV---DGTNLAIQDSRKTD 91 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-------~~-~~~------------~~~~~~~---~~~~l~i~~~~~~d 91 (216)
.+.+|++++|.|.+ .......+.||+.... +. ... ..++... ....|+|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEV-LNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEe-cCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36789999999987 3334457999984321 10 000 1223221 12369999999999
Q ss_pred CceEEEEEE
Q psy573 92 DGRYQCVVK 100 (216)
Q Consensus 92 ~g~y~C~~~ 100 (216)
+|.|.|.+.
T Consensus 81 sgtY~Ca~~ 89 (104)
T cd05720 81 EGYYFCSVA 89 (104)
T ss_pred CEEEEEEEc
Confidence 999999975
No 313
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.22 E-value=1.6e-05 Score=49.12 Aligned_cols=67 Identities=18% Similarity=0.367 Sum_probs=41.8
Q ss_pred eEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCeee--ecC-------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 129 TVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMSV--LPS-------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~~--~~~-------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
....|+.++|.|.+.++ | ..++.|++|+..+....... ..+ +.|.+..-..++...|+|.+.+....
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCCC
Confidence 34567889999999876 4 35899999998865321111 111 23444433332234699999997644
No 314
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.21 E-value=1.3e-05 Score=44.68 Aligned_cols=58 Identities=31% Similarity=0.643 Sum_probs=43.5
Q ss_pred EEEEEEeCCCCCcEEEEeeCCccCCCCCe--------eeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 136 IVFECSVGGDAVLTVHWKRLGSAMPEDRM--------SVLPSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 136 ~~l~C~~~~~p~~~i~W~~~~~~~~~~~~--------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
+.|.|.+.+.+...+.|++++........ .......|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 36899998877788999998765543221 12233568999999999999999998876
No 315
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.21 E-value=7.8e-06 Score=45.65 Aligned_cols=61 Identities=34% Similarity=0.609 Sum_probs=43.3
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccC-----ceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENS-----KRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+.|.|.+ .+.+...+.|++++........ ..........|.+.++...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689998 4467789999998876532221 11112233579999999999999999998754
No 316
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.13 E-value=2.2e-05 Score=42.71 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=36.2
Q ss_pred eCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 131 SAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 131 ~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
..|.+|+|+|+.... .+.|.+++..+... +..+.+.+-. +++|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCCC
Confidence 468899999997532 29999998665542 2334444444 8899999999543
No 317
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.12 E-value=6.5e-06 Score=48.88 Aligned_cols=66 Identities=23% Similarity=0.490 Sum_probs=42.8
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
|+.+.|.|.+..+.|.+.+.|+.++..+............+ +.|.+.....++...++|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence 67999999887788999999999987761111111111111 2466665555566679999998653
No 318
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.10 E-value=0.00011 Score=44.13 Aligned_cols=69 Identities=20% Similarity=0.403 Sum_probs=44.1
Q ss_pred CcEEEEEEeCCC-CCcEEEEeeCCcc----C-----------C---CCCeeee----cCCeEEEecCCCCCCeEEEEEEE
Q psy573 134 SIIVFECSVGGD-AVLTVHWKRLGSA----M-----------P---EDRMSVL----PSRSLQLSDVRLEDGGEYVCEAE 190 (216)
Q Consensus 134 ~~~~l~C~~~~~-p~~~i~W~~~~~~----~-----------~---~~~~~~~----~~~~l~i~~~~~~d~g~y~C~~~ 190 (216)
+++.|.|..... ....+.|.|.... + . .++.... .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 467888987432 3446889874320 0 0 0122221 24679999999999999999986
Q ss_pred c-CCcceEEEEEE
Q psy573 191 N-AVGKISASATL 202 (216)
Q Consensus 191 n-~~~~~~~~~~l 202 (216)
. +.|+..+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 5 46776666543
No 319
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.09 E-value=2.3e-05 Score=46.90 Aligned_cols=67 Identities=15% Similarity=0.290 Sum_probs=42.5
Q ss_pred CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe----eeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573 132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM----SVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~----~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 198 (216)
.++.+.|.|.+.+. | ...+.|.+++..+..... ....+ +.|.+..-...+...|+|.|.+.......
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 45668999999886 4 357899999887532211 11112 23444444444667999999998765443
No 320
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.08 E-value=3e-05 Score=46.41 Aligned_cols=65 Identities=17% Similarity=0.301 Sum_probs=38.8
Q ss_pred CCcEEEEeeCCCCCCC-CeeEEeeCCEEeccc-cCceEEEecCcEEE---EcccCCCCCceEEEEEEcCC
Q psy573 39 GDTALLECGPPRGHPE-PTLVWKKNGHPIDFE-NSKRLRLVDGTNLA---IQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~-~~~~~~~~~~~~l~---i~~~~~~d~g~y~C~~~~~~ 103 (216)
|+.++|.|.+....|. ..+.|+++++..... .........++.+. ...+...+.+.|+|.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~ 83 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSG 83 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCC
Confidence 7889999998433454 489999998633211 11122222333222 23344457788999998654
No 321
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.08 E-value=3.4e-05 Score=46.16 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCcEEEEEEeCCCCCc--EEEEeeCCccCCCC----CeeeecCCeEE---EecCCCCCCeEEEEEEEcCCcc
Q psy573 133 GSIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVLPSRSLQ---LSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~l~---i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
++.+.|.|.+.+..++ .+.|.+++...... ......++++. .-.+...+.+.|+|.+.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999986433 79999998532211 11111222222 1233445788999999887643
No 322
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.06 E-value=3.8e-05 Score=47.27 Aligned_cols=63 Identities=22% Similarity=0.470 Sum_probs=42.8
Q ss_pred eEeCCCcEEEEEEeCCC-CCcEEEEeeCCccC--C---------------------CCCeee--ec---CCeEEEecCCC
Q psy573 129 TVSAGSIIVFECSVGGD-AVLTVHWKRLGSAM--P---------------------EDRMSV--LP---SRSLQLSDVRL 179 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~-p~~~i~W~~~~~~~--~---------------------~~~~~~--~~---~~~l~i~~~~~ 179 (216)
.+.+|++++|.|..... ....+.|++..... . ..+... .. ...|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 34579999753210 0 012211 11 12599999999
Q ss_pred CCCeEEEEEEEc
Q psy573 180 EDGGEYVCEAEN 191 (216)
Q Consensus 180 ~d~g~y~C~~~n 191 (216)
+|+|.|.|...+
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999853
No 323
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.06 E-value=3.6e-05 Score=44.03 Aligned_cols=59 Identities=24% Similarity=0.382 Sum_probs=38.3
Q ss_pred EEEEEEeCCC-CC-cEEEEeeCCccCCCCCee----eecC------CeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 136 IVFECSVGGD-AV-LTVHWKRLGSAMPEDRMS----VLPS------RSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 136 ~~l~C~~~~~-p~-~~i~W~~~~~~~~~~~~~----~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
+.|.|.+.+. |. ..+.|++++..+..+... ...+ +.|.+.....++...|+|.|.+...
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~~ 72 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEGL 72 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcCC
Confidence 6899999887 43 589999999864322111 1112 3355555456677899999987653
No 324
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.05 E-value=1.4e-05 Score=48.44 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=42.8
Q ss_pred eEeCCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 129 TVSAGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
....++.+.|.|.+.+. | ...+.|+++|..+..... ....++ .|.+..-...+...|+|.|.+....
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~ 91 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS 91 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence 34456789999999875 4 457999999987743211 111122 3444444444567999999987643
No 325
>PHA02633 hypothetical protein; Provisional
Probab=98.04 E-value=3.3e-05 Score=41.21 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=38.8
Q ss_pred cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEecceeeec
Q psy573 168 PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQSKYLKVIH 213 (216)
Q Consensus 168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~~p~~~~~ 213 (216)
....|.|-++..+|+|.|.|.+.|..-....++.|.|.......++
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~~~ip 61 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIESNID 61 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccccccc
Confidence 3456888999999999999999998888999999999877665554
No 326
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.03 E-value=3.8e-05 Score=45.76 Aligned_cols=67 Identities=21% Similarity=0.319 Sum_probs=41.3
Q ss_pred ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccCceEEEecCcEEEEc---ccCCCCCceEEEEEEcCC
Q psy573 37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQ---DSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~---~~~~~d~g~y~C~~~~~~ 103 (216)
..|...+|.|.+....| ...+.|+++|..+............++++++. .+...+...|.|.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 45777899999844344 45889999999875211112222334443332 234566778999998643
No 327
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.02 E-value=2e-05 Score=45.70 Aligned_cols=58 Identities=22% Similarity=0.467 Sum_probs=36.4
Q ss_pred cEEEEeeCCCCCCC--CeeEEeeCCE-----Eecc-----------ccCceEEEecC-----cEEEEcccCCCCCceEEE
Q psy573 41 TALLECGPPRGHPE--PTLVWKKNGH-----PIDF-----------ENSKRLRLVDG-----TNLAIQDSRKTDDGRYQC 97 (216)
Q Consensus 41 ~~~l~C~~~~~~~~--~~~~W~~~~~-----~~~~-----------~~~~~~~~~~~-----~~l~i~~~~~~d~g~y~C 97 (216)
++.|.|.+ ..... ..+.||+... .+.. ....++..... .+|.|.+++.+|+|.|.|
T Consensus 1 ~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKA-SGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYC 79 (81)
T ss_pred CEEEEEEE-eccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEE
Confidence 47899987 33222 3788988431 1100 12334443322 469999999999999999
Q ss_pred EE
Q psy573 98 VV 99 (216)
Q Consensus 98 ~~ 99 (216)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 74
No 328
>KOG1480|consensus
Probab=98.02 E-value=5.9e-06 Score=65.46 Aligned_cols=168 Identities=23% Similarity=0.425 Sum_probs=98.5
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCCeeE------EeeCCEEeccccCceEEEe--cCcEEEEcccCCCCCc---
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLV------WKKNGHPIDFENSKRLRLV--DGTNLAIQDSRKTDDG--- 93 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~------W~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g--- 93 (216)
+.|...|++..+..|.++.|.|.+ . +.+++. |.++.........+..... ......|.....++.|
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a-~--~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~ 101 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKA-N--PATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPE 101 (909)
T ss_pred ceeeecCCccceecCCCccceecC-C--cccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCcc
Confidence 567889999999999999999975 2 333443 4444332211111100000 0112334333333332
Q ss_pred eEEEEEE--cCCCCcccceeEEEEeec-ceEEeCCCceeEeCCCcEEEEEEe-CCCCCcEEEEeeCCccCCCC-Ceeeec
Q psy573 94 RYQCVVK--NVAGTRESTDAVLRVLVK-PYIIRGPKDTTVSAGSIIVFECSV-GGDAVLTVHWKRLGSAMPED-RMSVLP 168 (216)
Q Consensus 94 ~y~C~~~--~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~-~~~~~~ 168 (216)
.|.|+-. ...|...+....+.+.+. -.+...+....+..+....+.|.. .+.|...+.|++++..+... +.....
T Consensus 102 d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~ 181 (909)
T KOG1480|consen 102 DYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS 181 (909)
T ss_pred ceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh
Confidence 3777643 222321111111111111 123344555677778888888875 67788889999998766542 233334
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
...+++..++..|.|+|+|.+.|-.+.
T Consensus 182 d~~li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 182 DHNLIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred cCCccccchhhhhcccceeeeehhhcc
Confidence 567999999999999999999998775
No 329
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.01 E-value=1.3e-05 Score=48.64 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=46.7
Q ss_pred cceEecccc-eEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceE
Q psy573 25 EEFRVQPKS-QRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRY 95 (216)
Q Consensus 25 ~~~~~~~~~-~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y 95 (216)
|.+.+.+.. .....++.++|.|.+....| ...+.|+++|+.+.... ........++ .|.+......+...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 344443333 34557788999999855455 56899999999873221 1111112233 344544444445679
Q ss_pred EEEEEcCC
Q psy573 96 QCVVKNVA 103 (216)
Q Consensus 96 ~C~~~~~~ 103 (216)
.|.+....
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99998654
No 330
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.99 E-value=3.2e-05 Score=46.47 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=42.3
Q ss_pred CCceeEeCCCcEEEEEEeCCC-CC--cEEEEeeCCccCCCC---CeeeecCC------eEEEecCCCCCCeEEEEEEEcC
Q psy573 125 PKDTTVSAGSIIVFECSVGGD-AV--LTVHWKRLGSAMPED---RMSVLPSR------SLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~-p~--~~i~W~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
|....+..|+.+.|.|.+.+. .+ ..+.|.++++..... ......++ .|.+..-...+...|+|.|.+.
T Consensus 6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~ 85 (96)
T cd07696 6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHP 85 (96)
T ss_pred cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECC
Confidence 344455668899999999888 33 368999987432110 01111222 3444433333456899999987
Q ss_pred Ccc
Q psy573 193 VGK 195 (216)
Q Consensus 193 ~~~ 195 (216)
...
T Consensus 86 ~l~ 88 (96)
T cd07696 86 DLP 88 (96)
T ss_pred CCC
Confidence 644
No 331
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.98 E-value=0.00013 Score=43.61 Aligned_cols=61 Identities=21% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.++...|.|.+.++.+ ..+.|.++|..+..+.. ....++ .|.+. ..+...|+|.|.+....
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~l~ 86 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWGLE 86 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCCCC
Confidence 3566799999988643 46899999987654211 111222 24433 34566999999987543
No 332
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.95 E-value=2.4e-05 Score=47.57 Aligned_cols=66 Identities=18% Similarity=0.305 Sum_probs=41.1
Q ss_pred EeCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCCCe-------------eeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 130 VSAGSIIVFECSVGGDAVL--TVHWKRLGSAMPEDRM-------------SVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 130 ~~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~-------------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
+..+..++|.|.+.+..+. .+.|.+++..+..... .+...+.|.+..-...+...|+|.|.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 3456789999999886443 5899999887643210 111112344433333456689999998754
Q ss_pred c
Q psy573 195 K 195 (216)
Q Consensus 195 ~ 195 (216)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
No 333
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.94 E-value=0.0002 Score=42.68 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=41.5
Q ss_pred eCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCe----eeecCCeEEE---ecCCCCCCeEEEEEEEcCCcc
Q psy573 131 SAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRM----SVLPSRSLQL---SDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 131 ~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~----~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~ 195 (216)
..|....|.|.+.++. ...+.|.+||..+. +.. ....+.++.+ -.+.+.+...|+|.+.+....
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~l~ 85 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNSMS 85 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECCCC
Confidence 3466679999998864 34689999998875 311 1122333332 134566777999999986543
No 334
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.93 E-value=5.3e-05 Score=46.38 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=42.6
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCcc----C------CC-C------------Ceeee---cCCeEEEecCCCCCC
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSA----M------PE-D------------RMSVL---PSRSLQLSDVRLEDG 182 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~----~------~~-~------------~~~~~---~~~~l~i~~~~~~d~ 182 (216)
.+.+|++++|.|.........+.|++.... + .. . +.... ....|.|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 367899999999986554556999975421 1 00 0 01110 113599999999999
Q ss_pred eEEEEEEEc
Q psy573 183 GEYVCEAEN 191 (216)
Q Consensus 183 g~y~C~~~n 191 (216)
|.|.|.+.+
T Consensus 82 gtY~Ca~~~ 90 (104)
T cd05720 82 GYYFCSVAS 90 (104)
T ss_pred EEEEEEEcc
Confidence 999999864
No 335
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.92 E-value=0.00026 Score=44.52 Aligned_cols=69 Identities=28% Similarity=0.385 Sum_probs=45.8
Q ss_pred CCCceeEeCCCcEEEEEEeCCCC------CcEEEEeeCCccC---------C---------CCCeeee-----cCCeEEE
Q psy573 124 GPKDTTVSAGSIIVFECSVGGDA------VLTVHWKRLGSAM---------P---------EDRMSVL-----PSRSLQL 174 (216)
Q Consensus 124 ~~~~~~~~~g~~~~l~C~~~~~p------~~~i~W~~~~~~~---------~---------~~~~~~~-----~~~~l~i 174 (216)
.|....+..|+.+.|.|...... ...+.|++..... . .++.... ....|.|
T Consensus 5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 35567888999999999763221 2458999853210 0 0122221 1246999
Q ss_pred ecCCCCCCeEEEEEEEcC
Q psy573 175 SDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 175 ~~~~~~d~g~y~C~~~n~ 192 (216)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998664
No 336
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.92 E-value=0.0001 Score=44.15 Aligned_cols=61 Identities=11% Similarity=0.276 Sum_probs=38.2
Q ss_pred CCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----eeecCC------eEEEecCCCCCCeEEEEEEEcCC
Q psy573 132 AGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----SVLPSR------SLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 132 ~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~~~~~~------~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
.++.+.|.|.+.++.+ ..+.|.+++.. ..+.. ....++ .|.+..........|+|.|.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999988643 46899999986 32211 111122 34444333333568999999875
No 337
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.91 E-value=0.00024 Score=42.56 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=41.2
Q ss_pred eCCCcEEEEEEeCCCCCc--EEEEeeCCccCCCC----CeeeecCCeEEE---ecCCCCCCeEEEEEEEcCCcce
Q psy573 131 SAGSIIVFECSVGGDAVL--TVHWKRLGSAMPED----RMSVLPSRSLQL---SDVRLEDGGEYVCEAENAVGKI 196 (216)
Q Consensus 131 ~~g~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~----~~~~~~~~~l~i---~~~~~~d~g~y~C~~~n~~~~~ 196 (216)
..|+.+.|.|.+.+..++ ++.|++++..+... ......++++.+ -.+...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~~ 86 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQE 86 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCCC
Confidence 357889999999886433 68999999876442 111112222221 1233445669999999876543
No 338
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.90 E-value=9.4e-05 Score=42.30 Aligned_cols=63 Identities=21% Similarity=0.270 Sum_probs=38.2
Q ss_pred cEEEEeeCCCCCCC-CeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 41 TALLECGPPRGHPE-PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 41 ~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
.++|.|.+....|. ..+.|+++|+.+.... ........++ .|.+.....++...|+|.+....
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899998444555 6999999998642211 1111111222 35555555566678999997643
No 339
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.90 E-value=0.00015 Score=43.37 Aligned_cols=67 Identities=24% Similarity=0.291 Sum_probs=40.5
Q ss_pred ecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccc-cCceEEEecCcEEEE---cccCCCCCceEEEEEEcCC
Q psy573 37 AAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFE-NSKRLRLVDGTNLAI---QDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~-~~~~~~~~~~~~l~i---~~~~~~d~g~y~C~~~~~~ 103 (216)
..|+.++|.|.+....|.. .+.|+++|..+... .........++++.+ ..+...+...|.|.+....
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 4689999999995545544 88999999986432 111122222322221 1233445667999998654
No 340
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.89 E-value=7e-05 Score=46.47 Aligned_cols=71 Identities=14% Similarity=0.216 Sum_probs=44.5
Q ss_pred eEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe----e-------eecCCeEEEecCCCCC-CeEEEEEEEcCCc
Q psy573 129 TVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM----S-------VLPSRSLQLSDVRLED-GGEYVCEAENAVG 194 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~----~-------~~~~~~l~i~~~~~~d-~g~y~C~~~n~~~ 194 (216)
....++.+.|.|.+.++.+ ..+.|.+|+..+..... . +...+.|.+......+ ...|+|.|.+...
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGG 93 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCC
Confidence 3345677999999988643 37899999977653211 1 1112335544443333 5699999999876
Q ss_pred ceEEE
Q psy573 195 KISAS 199 (216)
Q Consensus 195 ~~~~~ 199 (216)
.....
T Consensus 94 ~~~~~ 98 (115)
T cd05769 94 TDTDK 98 (115)
T ss_pred cccee
Confidence 65543
No 341
>KOG1480|consensus
Probab=97.87 E-value=3.8e-06 Score=66.51 Aligned_cols=105 Identities=31% Similarity=0.550 Sum_probs=79.8
Q ss_pred hhHhhhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCC
Q psy573 10 KEEEEKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRK 89 (216)
Q Consensus 10 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 89 (216)
...+..+++++.+....+...|.-..|..+..+.+.|+.+.+.|...+.|++++..++. ...........+.+..+..
T Consensus 115 ~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~p--d~n~~~~~d~~li~~~arl 192 (909)
T KOG1480|consen 115 TVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDP--DANVIRASDHNLIISQARL 192 (909)
T ss_pred cchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCc--cccchhhhcCCccccchhh
Confidence 44556666666666667777788888999999999999888888899999999988755 3333334456799999999
Q ss_pred CCCceEEEEEEcCCCCcccceeEEEEe
Q psy573 90 TDDGRYQCVVKNVAGTRESTDAVLRVL 116 (216)
Q Consensus 90 ~d~g~y~C~~~~~~~~~~~~~~~l~v~ 116 (216)
.|.|.|+|++.+..+........+.+.
T Consensus 193 sd~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 193 SDSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hhcccceeeeehhhccccccceEEEEE
Confidence 999999999998766544444444443
No 342
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.84 E-value=9.4e-05 Score=40.27 Aligned_cols=52 Identities=21% Similarity=0.395 Sum_probs=34.8
Q ss_pred EecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573 36 VAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 36 ~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
-..|..|+|+|+. . ...+.|++++..+.. .+..+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~-~---~~~i~W~~n~~~~~g---------~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPL-S---GDDIKWKKNDQVSQG---------SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCC-C---CCCceEEeCCccCCC---------CCceEEeeccC-CCCceEEEEeCC
Confidence 3579999999964 2 123899999865522 11234444444 889999999864
No 343
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.81 E-value=0.0002 Score=44.84 Aligned_cols=67 Identities=22% Similarity=0.419 Sum_probs=45.3
Q ss_pred CCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCc--cC---------------C---CCCeeee--c-C--CeEEEecC
Q psy573 125 PKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGS--AM---------------P---EDRMSVL--P-S--RSLQLSDV 177 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~--~~---------------~---~~~~~~~--~-~--~~l~i~~~ 177 (216)
+....+.+|++++|.|...... ...+.|++... .+ . .++.... . . ..|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 4566888999999999875432 45689987432 11 0 1122221 1 1 25999999
Q ss_pred CCCCCeEEEEEEEc
Q psy573 178 RLEDGGEYVCEAEN 191 (216)
Q Consensus 178 ~~~d~g~y~C~~~n 191 (216)
..+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999998864
No 344
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.79 E-value=0.00012 Score=43.52 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=42.4
Q ss_pred EEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCce-E----EEecCcEEEEcccCCCCCc-eEEEEEEcCC
Q psy573 35 RVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKR-L----RLVDGTNLAIQDSRKTDDG-RYQCVVKNVA 103 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~-~----~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~ 103 (216)
.+.+|..+++.|.+....|. ..+.|+++...+....... . .......+++... .+|.| .|.|.+....
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l 86 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEee
Confidence 45899999999999655555 5789998776553221110 0 0011234666654 66666 7999987543
No 345
>PHA03376 BARF1; Provisional
Probab=97.77 E-value=0.00051 Score=45.75 Aligned_cols=67 Identities=15% Similarity=0.273 Sum_probs=45.0
Q ss_pred ceeEeCCCcEEEEEEeCCC---CCcEEEEeeCCc----cC-----------CCC---Ceee---ecCCeEEEecCCCCCC
Q psy573 127 DTTVSAGSIIVFECSVGGD---AVLTVHWKRLGS----AM-----------PED---RMSV---LPSRSLQLSDVRLEDG 182 (216)
Q Consensus 127 ~~~~~~g~~~~l~C~~~~~---p~~~i~W~~~~~----~~-----------~~~---~~~~---~~~~~l~i~~~~~~d~ 182 (216)
......|+.+.|.|..... +...|.|+|.+. .+ +.+ +... ..+-+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 4567789999999987522 455799999532 00 000 1111 1224689999999999
Q ss_pred eEEEEEEEcCC
Q psy573 183 GEYVCEAENAV 193 (216)
Q Consensus 183 g~y~C~~~n~~ 193 (216)
|+|+|.+.-..
T Consensus 100 GtY~C~fQkge 110 (221)
T PHA03376 100 GNYLCRMKLGE 110 (221)
T ss_pred ceEEEEEEcCC
Confidence 99999997544
No 346
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.77 E-value=0.00013 Score=43.84 Aligned_cols=71 Identities=17% Similarity=0.252 Sum_probs=42.0
Q ss_pred CCceeEeCCCcEEEEEEeCCCC---CcEEEEeeCCccCCC--C-----CeeeecCCeEEEecCCCCCCeEEEEEEEcCCc
Q psy573 125 PKDTTVSAGSIIVFECSVGGDA---VLTVHWKRLGSAMPE--D-----RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVG 194 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p---~~~i~W~~~~~~~~~--~-----~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~ 194 (216)
|.......+..+.|.|.+.+.. ...+.|.+++..-.. . ...+...+.|.+..-....+..|+|.|.+...
T Consensus 11 Ps~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 11 PALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred cChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3333455678899999998754 346999998864100 0 01111123344443333445689999998765
Q ss_pred c
Q psy573 195 K 195 (216)
Q Consensus 195 ~ 195 (216)
.
T Consensus 91 ~ 91 (99)
T cd04986 91 D 91 (99)
T ss_pred c
Confidence 3
No 347
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.75 E-value=0.0002 Score=42.81 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=38.5
Q ss_pred ecCCcEEEEeeCCCCCC-CCeeEEeeCCEEecccc-CceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 37 AAGDTALLECGPPRGHP-EPTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
..|+..+|.|.+....| ...+.|.++|..+.... ........++ .|.+. .++...|.|.+....
T Consensus 13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~~ 84 (94)
T cd05767 13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHWG 84 (94)
T ss_pred cCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeCC
Confidence 34677899999844445 46889999998863211 1111222232 24333 345568999998643
No 348
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.74 E-value=0.0004 Score=41.63 Aligned_cols=63 Identities=16% Similarity=0.304 Sum_probs=39.7
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
.....+.|.+..+.|.++|.|+++.... .........+ +.|.+.....+|...|+|.+.+...
T Consensus 15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~---~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l 83 (95)
T cd05719 15 EPVTVATCVSANGKPPATISWETTLGGE---AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL 83 (95)
T ss_pred CccEEEEEECCCCcCCCEEEEEeCCCCc---ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 3457789998788999999999971111 0011111111 2466666666666679999988653
No 349
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.73 E-value=0.00017 Score=43.17 Aligned_cols=67 Identities=18% Similarity=0.301 Sum_probs=39.7
Q ss_pred ecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccc-cCceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 37 AAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFE-NSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 37 ~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~-~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
..++.++|.|.+....|. ..+.|+++|..+... .........++ .|.+......+...|.|.+....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 355679999998444554 689999999876221 11111112222 34444433345567999998654
No 350
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.70 E-value=0.00038 Score=38.22 Aligned_cols=49 Identities=20% Similarity=0.495 Sum_probs=36.1
Q ss_pred CCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEc
Q psy573 133 GSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAEN 191 (216)
Q Consensus 133 g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n 191 (216)
...+.|.|.+. .+|.|++ |..+... ...+|.+.....+..|.|.|.+.+
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~-----~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV-----SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc-----cccEEeccCcccCCCcceEecCcc
Confidence 35689999752 5699999 5443321 156788888888889999999876
No 351
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.69 E-value=0.00064 Score=40.74 Aligned_cols=66 Identities=18% Similarity=0.315 Sum_probs=39.7
Q ss_pred CcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeec------CCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573 134 SIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLP------SRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199 (216)
Q Consensus 134 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~------~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~ 199 (216)
....+.|.+ .+.|.+.|.|+++............. .+.|.+.....+++..|+|.+.|........
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~ 88 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR 88 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 456789998 67899999999972111101111111 1345555444445569999999987554333
No 352
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.64 E-value=0.00049 Score=41.17 Aligned_cols=70 Identities=14% Similarity=0.204 Sum_probs=41.8
Q ss_pred CcEEEEEEe-CCCCCcEEEEeeCCccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 134 SIIVFECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 134 ~~~~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
....+.|.+ .+.|.+.|.|+++.............+ +.|.+..-..+|+..|+|.+.|........+.++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~ 92 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVT 92 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence 457889987 567899999998732111111111111 3455544444456699999999876655544443
No 353
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.60 E-value=0.00056 Score=40.94 Aligned_cols=68 Identities=19% Similarity=0.351 Sum_probs=45.8
Q ss_pred eEEecCCcEEE-EeeCCCCCCCCeeEEeeCCEEec-----cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 34 QRVAAGDTALL-ECGPPRGHPEPTLVWKKNGHPID-----FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 34 ~~~~~G~~~~l-~C~~~~~~~~~~~~W~~~~~~~~-----~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
..+.+|+.+.+ .|.+..+.|.+++.|+.+..... ....+.+... +.|.+.....+|.-.+.|.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~--S~~~l~p~r~d~G~~vtC~V~H~a 84 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVT--SEYIWVPSRHANGHPLTCVVSHPA 84 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEE--EEEEEEeCHHHCCcEEEEEEeCcc
Confidence 56778999999 99988899999999998633221 0111111111 356666666667777999998754
No 354
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.60 E-value=0.00037 Score=40.68 Aligned_cols=61 Identities=25% Similarity=0.444 Sum_probs=40.9
Q ss_pred CCCcEEEEEEeCCC-C-CcEEEEeeCCccCCCCCee---e-ecCC------eEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 132 AGSIIVFECSVGGD-A-VLTVHWKRLGSAMPEDRMS---V-LPSR------SLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 132 ~g~~~~l~C~~~~~-p-~~~i~W~~~~~~~~~~~~~---~-~~~~------~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.++.+.|.|.+.++ | ...+.|.+++..+...... . ..++ .|.+. ..+...|+|.|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 47889999999775 4 3369999999876543211 1 1222 34444 55666999999987654
No 355
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.59 E-value=0.00027 Score=40.81 Aligned_cols=20 Identities=45% Similarity=0.861 Sum_probs=17.6
Q ss_pred CeEEEecCCCCCCeEEEEEE
Q psy573 170 RSLQLSDVRLEDGGEYVCEA 189 (216)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~~ 189 (216)
..|.|.+++.+|+|.|.|.+
T Consensus 62 ~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 62 VSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred EEEEEcCCCHHHCEEEEEcC
Confidence 35999999999999999964
No 356
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.58 E-value=0.00023 Score=42.77 Aligned_cols=70 Identities=11% Similarity=0.201 Sum_probs=39.2
Q ss_pred eEEecCCcEEEEeeCCCC-CC-CCeeEEeeCCEEeccccCceEEEecCcE------EEEcccCCCCCceEEEEEEcCC
Q psy573 34 QRVAAGDTALLECGPPRG-HP-EPTLVWKKNGHPIDFENSKRLRLVDGTN------LAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~-~~-~~~~~W~~~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
..+..|+.++|.|.+... .| ...+.|.++++..............+++ |.+..-...+.-.|.|.+....
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345678999999998544 33 4588999987533111111111222333 3333322223346999998754
No 357
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.55 E-value=0.00044 Score=42.09 Aligned_cols=69 Identities=20% Similarity=0.310 Sum_probs=39.9
Q ss_pred EEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCc--eEEEe--cCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 35 RVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSK--RLRLV--DGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~--~~~~~--~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
.+..|..++|.|.+....|. ..+.|+++|+.+...... ..... .++ .|.+..-...+...|.|.+....
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 34467899999998444453 478999999876422110 01111 122 34443333334457999998654
No 358
>PHA02982 hypothetical protein; Provisional
Probab=97.51 E-value=0.005 Score=41.72 Aligned_cols=119 Identities=13% Similarity=0.265 Sum_probs=69.8
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEe-cc----------------ccCceE--EEe-cCcEEEEcccCCCCC
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPI-DF----------------ENSKRL--RLV-DGTNLAIQDSRKTDD 92 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~-~~----------------~~~~~~--~~~-~~~~l~i~~~~~~d~ 92 (216)
++....|+.|.|.|..+.+.......|.++.... .. .....+ ... ..++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 4566789999999997655555678898854322 10 011111 112 245899999999999
Q ss_pred ceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeC-CCcEEEEEEeCCCCCcEEEEeeCCc
Q psy573 93 GRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSA-GSIIVFECSVGGDAVLTVHWKRLGS 157 (216)
Q Consensus 93 g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~-g~~~~l~C~~~~~p~~~i~W~~~~~ 157 (216)
|-|+|++....+.......-|.|+....+. .+.+ .....+.|-+.....+-..|.-+|-
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~------~W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKEDILY------VVEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecceEEE------EEEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 999999987654433333344442221111 1112 3445678887444322227876654
No 359
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.50 E-value=0.00046 Score=41.36 Aligned_cols=34 Identities=12% Similarity=0.267 Sum_probs=24.7
Q ss_pred eEEecCCcEEEEeeCCCCCC-CCeeEEeeCCEEec
Q psy573 34 QRVAAGDTALLECGPPRGHP-EPTLVWKKNGHPID 67 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~ 67 (216)
..+..+..++|.|.+....| ...+.|.++|..+.
T Consensus 11 ~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~ 45 (96)
T cd07697 11 KEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI 45 (96)
T ss_pred HHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence 34445678999999844344 45889999998763
No 360
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.49 E-value=0.0015 Score=39.14 Aligned_cols=68 Identities=15% Similarity=0.266 Sum_probs=42.3
Q ss_pred eeEeCCCcEEE-EEEe-CCCCCcEEEEeeCCccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 128 TTVSAGSIIVF-ECSV-GGDAVLTVHWKRLGSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 128 ~~~~~g~~~~l-~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
..+.+|+.+.+ .|.+ .+.|.+.|.|+.+.............+ +.+.+...+..|+-.++|.+.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 35567788888 8886 677899999997632221111111112 34555545555666999999998654
No 361
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.46 E-value=0.002 Score=38.58 Aligned_cols=62 Identities=10% Similarity=0.242 Sum_probs=39.6
Q ss_pred CcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecC------cEEEEcccCCCCCceEEEEEEcCCC
Q psy573 40 DTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDG------TNLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 40 ~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
..+.+.|.+..+.|...+.|+++.... .........+ +.|.+.....+|...|.|.+.+...
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence 457899998788999999999972211 0011111111 2466666666666679999998653
No 362
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.44 E-value=0.00084 Score=36.89 Aligned_cols=49 Identities=24% Similarity=0.469 Sum_probs=36.0
Q ss_pred CCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEc
Q psy573 39 GDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 39 G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
.+.|.|+|.+ ...+.|++ |..+... .+.+|.+.....+-.|.|.|.+.+
T Consensus 6 ~~~V~L~C~~-----~tsi~W~k-G~~~~~~--------~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNG-----ATNITWKK-GKEILEV--------SNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecC-----CCcEEEec-Ccccccc--------cccEEeccCcccCCCcceEecCcc
Confidence 4579999965 24699999 5544211 145688888889999999998865
No 363
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.44 E-value=0.00097 Score=40.00 Aligned_cols=63 Identities=13% Similarity=0.180 Sum_probs=37.6
Q ss_pred eEeCCCcEEEEEEeCCCCC--cEEEEeeCCccCCCCCe---------eeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 129 TVSAGSIIVFECSVGGDAV--LTVHWKRLGSAMPEDRM---------SVLPSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
....++.+.|.|.+.+..+ ..+.|.++|..+..+.. .+...+.|.+..-. ....|+|.|.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEECC
Confidence 3344677999999988643 36899999987543211 11111223333221 2446999999854
No 364
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.40 E-value=0.00063 Score=42.25 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=42.3
Q ss_pred eEEecCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccC-ceEEEecC-c------EEEEcccCCCC-CceEEEEEEcCC
Q psy573 34 QRVAAGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENS-KRLRLVDG-T------NLAIQDSRKTD-DGRYQCVVKNVA 103 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~-~~~~~~~~-~------~l~i~~~~~~d-~g~y~C~~~~~~ 103 (216)
..+.+++.++|.|.+....|. ..+.|++++..+..... .......+ + .|.+......+ ...|.|.+....
T Consensus 13 ~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 13 AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 334467889999998555565 58999999987643211 01111111 2 35555444333 456999998654
Q ss_pred C
Q psy573 104 G 104 (216)
Q Consensus 104 ~ 104 (216)
.
T Consensus 93 ~ 93 (115)
T cd05769 93 G 93 (115)
T ss_pred C
Confidence 3
No 365
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.40 E-value=0.0018 Score=39.86 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=44.4
Q ss_pred cccceEEecCCcEEEEeeCCCCC--CC-CeeEEeeCCE-Ee------------ccccCceEEEec-----CcEEEEcccC
Q psy573 30 QPKSQRVAAGDTALLECGPPRGH--PE-PTLVWKKNGH-PI------------DFENSKRLRLVD-----GTNLAIQDSR 88 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~--~~-~~~~W~~~~~-~~------------~~~~~~~~~~~~-----~~~l~i~~~~ 88 (216)
++....+..|..++|.|.+ .+. .. ..+.|+|... .+ ......++.... ...|+|.+++
T Consensus 4 ~~~~~lv~p~~sv~LsC~~-sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 4 QQSPVLASSNGAASLVCEY-TYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred ecCCeEEcCCCCEEEEEEe-cCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 4455678899999999987 332 22 4788998421 11 001122222111 1269999999
Q ss_pred CCCCceEEEEEE
Q psy573 89 KTDDGRYQCVVK 100 (216)
Q Consensus 89 ~~d~g~y~C~~~ 100 (216)
.+|.+.|.|..+
T Consensus 83 a~DTa~Y~Ca~e 94 (115)
T cd05721 83 ANQTDIYFCKIE 94 (115)
T ss_pred HHHCeEEEEEee
Confidence 999999999864
No 366
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.38 E-value=0.0012 Score=38.47 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=39.8
Q ss_pred cCCcEEEEeeCCCCCCC-CeeEEeeCCEEeccccCceEEE-ecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 38 AGDTALLECGPPRGHPE-PTLVWKKNGHPIDFENSKRLRL-VDGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~~~~-~~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
.+..++|.|.+....|. ..+.|++++..+.......... ..++ .|.+. ..+...|.|.+....
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES 77 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence 38899999998444554 4899999999874322222122 2333 24444 455557999998654
No 367
>PHA02633 hypothetical protein; Provisional
Probab=97.27 E-value=0.001 Score=35.65 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=28.2
Q ss_pred cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573 78 DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 78 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
.+..|.|.++..+|+|.|.|.+.+..-.. ..++.|.|..
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~ 54 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICL 54 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEee
Confidence 34579999999999999999998765433 2344555543
No 368
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.27 E-value=0.0057 Score=46.75 Aligned_cols=131 Identities=17% Similarity=0.126 Sum_probs=78.9
Q ss_pred EEEEcccCCCCCceEEEEEEcCCC--CcccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAG--TRESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRL 155 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~ 155 (216)
.|.|.+++..++|.|.=.+.+... ......+++.+...|.+.+.+ .-+.+|+...-.|.+..+.++ .+.|++|
T Consensus 290 pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 499999999999999866543221 122345667777788665543 467889999999999665433 5999999
Q ss_pred CccCCCCC----eeeecC------CeEEEecCCCCC--CeEEEEEEEcCCcceE-----EEEEEEEEecceeeec
Q psy573 156 GSAMPEDR----MSVLPS------RSLQLSDVRLED--GGEYVCEAENAVGKIS-----ASATLTVQSKYLKVIH 213 (216)
Q Consensus 156 ~~~~~~~~----~~~~~~------~~l~i~~~~~~d--~g~y~C~~~n~~~~~~-----~~~~l~v~~~p~~~~~ 213 (216)
++.+.... .....+ ++|.+......| .-..+|.+....+..+ .+..-.|-.+|.+.++
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~ 442 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE 442 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE
Confidence 88776321 111122 234442222222 3467999876554421 2233334445555544
No 369
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.16 E-value=0.00051 Score=43.21 Aligned_cols=70 Identities=19% Similarity=0.325 Sum_probs=37.8
Q ss_pred EEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCc--eEE--------E----ecCcEEEEcccCCCCCceEE
Q psy573 35 RVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSK--RLR--------L----VDGTNLAIQDSRKTDDGRYQ 96 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~--~~~--------~----~~~~~l~i~~~~~~d~g~y~ 96 (216)
...-++.|.|+|.+..- .+...+.|..+++.+-..... ... + .++.+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 34568999999988321 133468999998876321111 110 0 12345777765444 79999
Q ss_pred EEEEcCCCC
Q psy573 97 CVVKNVAGT 105 (216)
Q Consensus 97 C~~~~~~~~ 105 (216)
|++......
T Consensus 102 CeVt~~~~e 110 (130)
T PF08204_consen 102 CEVTELSRE 110 (130)
T ss_dssp EEEEETTEE
T ss_pred EEEEecCCC
Confidence 999876543
No 370
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.13 E-value=0.0031 Score=37.82 Aligned_cols=65 Identities=18% Similarity=0.299 Sum_probs=36.8
Q ss_pred cCCcEEEEeeCCCCCC-CCeeEEeeCCEEeccccC-ceEEEecCc------EEEEcccCCCCCceEEEEEEcCC
Q psy573 38 AGDTALLECGPPRGHP-EPTLVWKKNGHPIDFENS-KRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 38 ~G~~~~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~-~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
.++.++|.|.+....| ...+.|+++|+. ..... .......++ .|.+....-.....|.|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4667999999844444 458899999997 22210 011111122 24444332222456999998654
No 371
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.11 E-value=0.0015 Score=39.31 Aligned_cols=69 Identities=16% Similarity=0.271 Sum_probs=38.8
Q ss_pred eEEecCCcEEEEeeCCCCC-C-CCeeEEeeCCEEeccccCceEEEecCc------EEEEcccCCCCCceEEEEEEcCCC
Q psy573 34 QRVAAGDTALLECGPPRGH-P-EPTLVWKKNGHPIDFENSKRLRLVDGT------NLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~~~-~-~~~~~W~~~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
.....+..++|.|.+.... | ...+.|.+++.. ...... .....++ .|.+..-.-.....|+|.+.....
T Consensus 14 e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~-~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 14 EDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTS-AESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred HHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcC-cccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 3455788999999984434 4 358999999865 111111 1111122 344442222223459999987543
No 372
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.11 E-value=0.02 Score=43.29 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=73.0
Q ss_pred EEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLG 156 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~ 156 (216)
.|.|..++...+|.|+=.+.+..+.. ....+++....+|.+.+.+ .-+..|+...-.|.+..+.++ .+.|++|+
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 39999999999999998877655432 2334566667778766544 357789999999999665433 59999999
Q ss_pred ccCCCCCe---e--eecC-----CeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573 157 SAMPEDRM---S--VLPS-----RSLQLSDVRLED-GGEYVCEAENAVGK 195 (216)
Q Consensus 157 ~~~~~~~~---~--~~~~-----~~l~i~~~~~~d-~g~y~C~~~n~~~~ 195 (216)
..+...+. . ...+ +++++....... .-+.+|.+....+.
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~ 310 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDS 310 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCC
Confidence 87642111 1 1111 234443332222 23899998765544
No 373
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.11 E-value=0.071 Score=40.48 Aligned_cols=158 Identities=15% Similarity=0.254 Sum_probs=80.8
Q ss_pred eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccC--ceEEEecCc-----EEEEcccCCCCC-
Q psy573 23 LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENS--KRLRLVDGT-----NLAIQDSRKTDD- 92 (216)
Q Consensus 23 ~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~--~~~~~~~~~-----~l~i~~~~~~d~- 92 (216)
.+|.+.+.+ ..+.+|++..-.|.+....|. ..+.||.|+..+..... .......++ ++++.+......
T Consensus 220 r~Psvsv~~--~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~P 297 (466)
T PHA03270 220 RRPSLSIRP--HAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPP 297 (466)
T ss_pred cCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCC
Confidence 356665555 457799999999998444443 47899999998742111 111112222 243333222111
Q ss_pred ceEEEEEEcCCCC----cccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCCCCCeeee
Q psy573 93 GRYQCVVKNVAGT----RESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMPEDRMSVL 167 (216)
Q Consensus 93 g~y~C~~~~~~~~----~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~~~~~~~~ 167 (216)
-..+|.+.-.... ..+.+..-.|+.+|.+.+. ...|+ ..|.+.--| ...+.|..++...+.......
T Consensus 298 PsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~dG~---AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~ 369 (466)
T PHA03270 298 RNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FGGDE---AVCTAACVPEGVTLAWLLGADPAPAEKAAVA 369 (466)
T ss_pred CCceEEEEEccCCccceeecccccCccccCCeEEEE-----EeCCE---EEEeccccCCCCEEEEEecCCCCCCccceee
Confidence 2579998632221 1122333445555655432 22333 346654333 347999887765543322221
Q ss_pred c------CCeEEEe---cCCCCCCeEEEEEEEc
Q psy573 168 P------SRSLQLS---DVRLEDGGEYVCEAEN 191 (216)
Q Consensus 168 ~------~~~l~i~---~~~~~d~g~y~C~~~n 191 (216)
. .+...|. .+.. ...+|+|.+..
T Consensus 370 ~G~C~~~PGlvNlrS~~plSd-~~~eYTCrl~G 401 (466)
T PHA03270 370 GGPCPGRPGLARVRSALPLSR-EHSEYTCRLVG 401 (466)
T ss_pred cccCCCCCCceeeeccccccc-CCceEEEEEee
Confidence 1 1222222 2222 24699999864
No 374
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.07 E-value=0.012 Score=35.47 Aligned_cols=43 Identities=23% Similarity=0.352 Sum_probs=31.4
Q ss_pred eEEEe-cCcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEE
Q psy573 73 RLRLV-DGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRV 115 (216)
Q Consensus 73 ~~~~~-~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v 115 (216)
++... .+..|.|..++.+|+|.|.-++++..|......+.+.|
T Consensus 63 r~~F~~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 63 RFNFTSENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp HEEEETTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred eEeeeccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 44433 45689999999999999999999988877655555554
No 375
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.06 E-value=0.064 Score=40.52 Aligned_cols=166 Identities=16% Similarity=0.256 Sum_probs=85.0
Q ss_pred ceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEeccccCceEEE--ecC-------cEEEE
Q psy573 16 KKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFENSKRLRL--VDG-------TNLAI 84 (216)
Q Consensus 16 ~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~~~~~~~--~~~-------~~l~i 84 (216)
+.+.+-..+|.+.+.+ ..+.+|++..-.|.+....|. ..+.|+.+|............. .++ ++|.+
T Consensus 239 ~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl 316 (490)
T PHA03271 239 IYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITL 316 (490)
T ss_pred EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEc
Confidence 3344444466666665 456799999999998444443 4789999998874333222111 111 23444
Q ss_pred cccCCCCCceEEEEEEcCCCC-c--ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCC-CcEEEEeeCCccCC
Q psy573 85 QDSRKTDDGRYQCVVKNVAGT-R--ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDA-VLTVHWKRLGSAMP 160 (216)
Q Consensus 85 ~~~~~~d~g~y~C~~~~~~~~-~--~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~i~W~~~~~~~~ 160 (216)
.+...+..-..+|.+.-.... . .+.+..-.|..+|.+.. ....|+ ..|.+.--| ...+.|.-++...+
T Consensus 317 ~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv-----~FedG~---AVCtA~CVP~gV~lrWlVgD~p~p 388 (490)
T PHA03271 317 GNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL-----AFKDGY---AICTIECVPSGITVRWLVHDEPQP 388 (490)
T ss_pred ccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE-----EEeCCE---EEEeccccCCCcEEEEEecCCCCC
Confidence 443323334689998643221 1 12222333444554443 233333 346654333 34789987766543
Q ss_pred CCCe---eee----cCCeEEEec-CCCCC---CeEEEEEEEc
Q psy573 161 EDRM---SVL----PSRSLQLSD-VRLED---GGEYVCEAEN 191 (216)
Q Consensus 161 ~~~~---~~~----~~~~l~i~~-~~~~d---~g~y~C~~~n 191 (216)
.... ... ..+...|.. ...+| .-.|+|.+..
T Consensus 389 n~t~d~~itGvC~erPGlVNLrS~lPlSd~dgpveYTCrL~G 430 (490)
T PHA03271 389 NTTYDTVVTGLCRTIDRHRNLISRIPVQDNWQKTKYTCRLIG 430 (490)
T ss_pred CcccccccccccCCCCCceeeeccCCchhcCCceeEEEEEee
Confidence 2211 000 113344433 23333 3489999864
No 376
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.95 E-value=0.023 Score=43.36 Aligned_cols=131 Identities=16% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeCC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRLG 156 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~~ 156 (216)
.|.|..++...+|.|.=.+.+..+.. ....+++....+|.+.+.+ .-+.+|+...-.|.+..+.++ .+.|+.|+
T Consensus 199 ~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 39999999999999985554443321 2334445557777766544 457889999999999665433 59999999
Q ss_pred ccCCC-CC----eeee------cCCeEEEecCCC-CCCeEEEEEEEcCCcce--E---EEEEEEEEecceeeec
Q psy573 157 SAMPE-DR----MSVL------PSRSLQLSDVRL-EDGGEYVCEAENAVGKI--S---ASATLTVQSKYLKVIH 213 (216)
Q Consensus 157 ~~~~~-~~----~~~~------~~~~l~i~~~~~-~d~g~y~C~~~n~~~~~--~---~~~~l~v~~~p~~~~~ 213 (216)
..+.. .. .... ..++|.+..... ...-..+|.+....+.. + ....-.|-.+|.+.+.
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~ 350 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT 350 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE
Confidence 87762 21 1111 123455544333 33448999987554431 1 2233334455555544
No 377
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.94 E-value=0.0023 Score=40.31 Aligned_cols=78 Identities=18% Similarity=0.272 Sum_probs=42.7
Q ss_pred EeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCC---CC-Cee---------e----ecCCeEEEecCCCCCCeEEEE
Q psy573 130 VSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMP---ED-RMS---------V----LPSRSLQLSDVRLEDGGEYVC 187 (216)
Q Consensus 130 ~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~---~~-~~~---------~----~~~~~l~i~~~~~~d~g~y~C 187 (216)
..-++++.|+|.+... +...+.|.+++..+- .. ... . ..+..|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 3357889999998642 234599998876541 01 000 0 01123666653332 899999
Q ss_pred EEEcCCcceEEEEEEEEEecc
Q psy573 188 EAENAVGKISASATLTVQSKY 208 (216)
Q Consensus 188 ~~~n~~~~~~~~~~l~v~~~p 208 (216)
.+.......+..+.|......
T Consensus 103 eVt~~~~ege~~i~Lk~~~~s 123 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRVVS 123 (130)
T ss_dssp EEEETTEEEEEEEEEEE----
T ss_pred EEEecCCCceEEEEEEEEEEE
Confidence 999888888888887775443
No 378
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.80 E-value=0.012 Score=35.18 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=39.6
Q ss_pred eEeCCCcEEEEEEeCC-CCC--cEEEEeeCCccCCCCCeee--------ecCCeEEEecCCCCCCe-EEEEEEEcC
Q psy573 129 TVSAGSIIVFECSVGG-DAV--LTVHWKRLGSAMPEDRMSV--------LPSRSLQLSDVRLEDGG-EYVCEAENA 192 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~-~p~--~~i~W~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~g-~y~C~~~n~ 192 (216)
.+.+|..+++.|.+.+ .|. ..+.|+++...+....... .....+++.. ..+|.| .|+|.+.-.
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 3478999999999954 343 5699988665543322111 1123455554 366666 999998643
No 379
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.72 E-value=0.019 Score=35.44 Aligned_cols=64 Identities=11% Similarity=0.190 Sum_probs=41.9
Q ss_pred CceeEeCCCcEEEEEEeCCCCC---cEEEEeeCCccC--------------C--CCCeeee-----cCCeEEEecCCCCC
Q psy573 126 KDTTVSAGSIIVFECSVGGDAV---LTVHWKRLGSAM--------------P--EDRMSVL-----PSRSLQLSDVRLED 181 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~~p~---~~i~W~~~~~~~--------------~--~~~~~~~-----~~~~l~i~~~~~~d 181 (216)
....+..|..+.|.|.+.+... -.+.|.|..... . ..+.... ..-.|.|.+++.+|
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 4456778889999999966542 357888743211 0 0111111 11359999999999
Q ss_pred CeEEEEEE
Q psy573 182 GGEYVCEA 189 (216)
Q Consensus 182 ~g~y~C~~ 189 (216)
.+.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999976
No 380
>KOG4597|consensus
Probab=96.66 E-value=0.0037 Score=47.54 Aligned_cols=81 Identities=17% Similarity=0.196 Sum_probs=60.7
Q ss_pred CCceeEeCCCcEEEEEEeCCCCCcEEEEee---CCccCCCC------CeeeecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 125 PKDTTVSAGSIIVFECSVGGDAVLTVHWKR---LGSAMPED------RMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~---~~~~~~~~------~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
+..-.+..+++..++|.+.|.+.+.++|.+ ++..+-.. +........|.|-+....|.|.|+|.+.+..|.
T Consensus 203 pa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred cchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 344467788999999999999999999975 23222111 111123356999999999999999999999999
Q ss_pred eEEEEEEEEE
Q psy573 196 ISASATLTVQ 205 (216)
Q Consensus 196 ~~~~~~l~v~ 205 (216)
..+.+.+.+.
T Consensus 283 ~~rdv~c~s~ 292 (560)
T KOG4597|consen 283 LRRDVPCSSV 292 (560)
T ss_pred eeccceeeee
Confidence 9888877765
No 381
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.65 E-value=0.066 Score=40.44 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=66.8
Q ss_pred EEEEcccCCCCCceEEEEEEcCCCCcc-cceeEEEE-eecceEEeCCCceeEeCCCcEEEEEEeCCCCCc---EEEEeeC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAGTRE-STDAVLRV-LVKPYIIRGPKDTTVSAGSIIVFECSVGGDAVL---TVHWKRL 155 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~l~v-~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~~---~i~W~~~ 155 (216)
.+.|.++...++|.|.-...+...... ...+.+.+ +.+|.+...+ ..+..|+...-.|.+..+.++ .+.|+.|
T Consensus 208 ~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~n 285 (490)
T PHA03271 208 GVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQN 285 (490)
T ss_pred eEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 599999999999966554444322211 22233444 4455555543 357789999999999665433 5999999
Q ss_pred CccCCCCC---eee---------ecCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 156 GSAMPEDR---MSV---------LPSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 156 ~~~~~~~~---~~~---------~~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
|....... ... ..-+++.+.+......-..+|.+....+.
T Consensus 286 G~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~ 337 (490)
T PHA03271 286 GNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQGD 337 (490)
T ss_pred CccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccCC
Confidence 87653221 111 01123444333323344899999866553
No 382
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.57 E-value=0.21 Score=37.67 Aligned_cols=71 Identities=14% Similarity=0.168 Sum_probs=43.0
Q ss_pred eEEecCCcE-EEEeeCCCCCCCCeeEEeeCCEE-----eccccCce------EEE--ecCcEEEEcccCCCCCceEEEEE
Q psy573 34 QRVAAGDTA-LLECGPPRGHPEPTLVWKKNGHP-----IDFENSKR------LRL--VDGTNLAIQDSRKTDDGRYQCVV 99 (216)
Q Consensus 34 ~~~~~G~~~-~l~C~~~~~~~~~~~~W~~~~~~-----~~~~~~~~------~~~--~~~~~l~i~~~~~~d~g~y~C~~ 99 (216)
..+.-|+.+ .|+|..+.......+...+.+.. +....... +-. ....++.+.|++.+|+|.|+|.+
T Consensus 21 Ii~~~gd~~~nlTCiLP~~~~ADkvIviKGn~~~nt~ki~~sI~Nag~dn~CyCGd~dkeYsf~~~Nvs~sdEGrYrCIF 100 (500)
T PHA02914 21 IFLRNEDEELALTCILPAAKMADKVVLIKGNDMNNTKEIESSINNAGEDNVCYCGDPDKEYSFIEENIGEHEDGDFKCIF 100 (500)
T ss_pred EEEecCceEEeeEEEcCCCccccEEEEEeccCCCCeeEEEEeccCCCCCCccccCCCcceeEEEecCcccccCCcEEEEE
Confidence 455667776 99999866655567777664321 10000000 000 01236888999999999999998
Q ss_pred EcCCC
Q psy573 100 KNVAG 104 (216)
Q Consensus 100 ~~~~~ 104 (216)
.....
T Consensus 101 YLn~~ 105 (500)
T PHA02914 101 YLGDN 105 (500)
T ss_pred EeCCc
Confidence 75443
No 383
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.55 E-value=0.0082 Score=42.31 Aligned_cols=48 Identities=13% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCcEEEEeeCCccC-CCC-CeeeecCCeEEEecCCCCCCeEEEEEEEcCC
Q psy573 146 AVLTVHWKRLGSAM-PED-RMSVLPSRSLQLSDVRLEDGGEYVCEAENAV 193 (216)
Q Consensus 146 p~~~i~W~~~~~~~-~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~ 193 (216)
..|.+.|...++.. ... ...+...+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 36889999765544 433 3455577889999999999999999998665
No 384
>PHA03042 CD47-like protein; Provisional
Probab=96.53 E-value=0.019 Score=40.68 Aligned_cols=73 Identities=22% Similarity=0.347 Sum_probs=46.0
Q ss_pred EeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 130 VSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 130 ~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
..-++++.+.|.+..- ....+.|.+++..+-..+.. ...+|.+... ..-.|+|+|.|.+........+.|..
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence 3457889999998643 34469999998876322211 2234554433 23389999999876655555555554
Q ss_pred E
Q psy573 205 Q 205 (216)
Q Consensus 205 ~ 205 (216)
.
T Consensus 105 ~ 105 (286)
T PHA03042 105 V 105 (286)
T ss_pred E
Confidence 4
No 385
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.50 E-value=0.26 Score=37.92 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=71.8
Q ss_pred ceeeEEe-eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEecc-cc-CceEEEe-cC-----cEEEE
Q psy573 16 KKLKIEM-LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDF-EN-SKRLRLV-DG-----TNLAI 84 (216)
Q Consensus 16 ~~l~v~~-~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~-~~-~~~~~~~-~~-----~~l~i 84 (216)
..++|.. .+|.+.+.+ ..+.+|++..-.|.+....|. ..+.|+.++..+.. .. ....... ++ +.|++
T Consensus 228 ~~VtV~~yr~Psvsv~~--~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~ 305 (486)
T PHA03273 228 TSVTVSTYNAPLVDLSV--HPSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSI 305 (486)
T ss_pred eEEEEEEecCCcccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEec
Confidence 4455543 356665555 457899999999998444443 47899999998852 11 1122211 12 23444
Q ss_pred cccCC-CCCceEEEEEEcCCCC-cc---cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCC
Q psy573 85 QDSRK-TDDGRYQCVVKNVAGT-RE---STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLG 156 (216)
Q Consensus 85 ~~~~~-~d~g~y~C~~~~~~~~-~~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~ 156 (216)
.+... +..-..+|.+.-.... .. +.+..-.|..+|.+.+ ....| ...|.+.--|. ..+.|..++
T Consensus 306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-----~F~~G---~AVCtA~CVP~egV~l~W~v~D 376 (486)
T PHA03273 306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-----TVEDG---DAVCTAKCVPSTGVFVSWSVND 376 (486)
T ss_pred cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-----EEeCC---EEEEecccccCCCeeEEEEccC
Confidence 44322 2334589998632221 11 1233344555565543 22233 34577755544 678998766
No 386
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.45 E-value=0.0072 Score=42.56 Aligned_cols=50 Identities=14% Similarity=0.400 Sum_probs=39.3
Q ss_pred CCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 53 PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 53 ~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
..|.+.|...+... ........+...+.|.+.+...+++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~-l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKP-LSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcc-cCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 46789998865443 245556777888899999999999999999987543
No 387
>PHA03042 CD47-like protein; Provisional
Probab=95.21 E-value=0.22 Score=35.52 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=40.9
Q ss_pred EecCCcEEEEeeCCCCC-----CCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 36 VAAGDTALLECGPPRGH-----PEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 36 ~~~G~~~~l~C~~~~~~-----~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
-..++.+.++|.+ ... ....+.|..+++.+-..... +.++|.+... ..-.|.|+|++.+....
T Consensus 28 T~CN~TV~IpC~v-~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----n~aSL~~~f~-~~l~GNYTCEv~~l~n~ 95 (286)
T PHA03042 28 TTCNKTIVIVCNL-NLLIYYNISNIHINWKFNNKVIFKKNNT-----NTSSLKFNFS-KNLSGNYTCEAINKFNK 95 (286)
T ss_pred EecCceEEEEeec-CChhhcCccceEEEEEeCCeeEEEecCC-----cceEEEEecc-ccCCCceeEEEeecccC
Confidence 4568999999987 221 24568999998877322221 1245665544 34479999999875543
No 388
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.11 E-value=0.28 Score=29.00 Aligned_cols=66 Identities=21% Similarity=0.450 Sum_probs=43.4
Q ss_pred CCceeEeCCCcEEEEEEeCCC-----CCcEEEEeeCCccCCCCCeeeecCC--eEEEecCCCCCCeEEEEEEE
Q psy573 125 PKDTTVSAGSIIVFECSVGGD-----AVLTVHWKRLGSAMPEDRMSVLPSR--SLQLSDVRLEDGGEYVCEAE 190 (216)
Q Consensus 125 ~~~~~~~~g~~~~l~C~~~~~-----p~~~i~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~g~y~C~~~ 190 (216)
+....+..|.+++..|..... ....|.|..++..++.+.+....+. .+++.+......-.|.|...
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 455578899999999998533 3446999999888888877766554 45555555544556777643
No 389
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.07 E-value=0.12 Score=30.49 Aligned_cols=69 Identities=20% Similarity=0.448 Sum_probs=42.6
Q ss_pred ecccceEEecCCcEEEEeeCCCC----CCCCeeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEE
Q psy573 29 VQPKSQRVAAGDTALLECGPPRG----HPEPTLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 29 ~~~~~~~~~~G~~~~l~C~~~~~----~~~~~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~ 100 (216)
+.|+...+..|++++..|..... .....+.|..++..+ ...++...++ +.+++.+.....+-.|-|...
T Consensus 8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~i---P~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKI---PGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCES---TCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEEC---ChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 45667788999999999987433 244588999988855 2333333333 357777766665556777644
No 390
>PHA03269 envelope glycoprotein C; Provisional
Probab=94.76 E-value=1.6 Score=34.23 Aligned_cols=165 Identities=16% Similarity=0.206 Sum_probs=85.1
Q ss_pred eeeEEe-eccceEecccceEEecCCcEEEEeeCCCCCCC--CeeEEeeCCEEecccc-CceEEEecCc------EEEEcc
Q psy573 17 KLKIEM-LREEFRVQPKSQRVAAGDTALLECGPPRGHPE--PTLVWKKNGHPIDFEN-SKRLRLVDGT------NLAIQD 86 (216)
Q Consensus 17 ~l~v~~-~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~--~~~~W~~~~~~~~~~~-~~~~~~~~~~------~l~i~~ 86 (216)
.++|.. .+|.+.+.+ ..+.+|++..-.|.+....|. ..+.||.++..+.... ........++ .|++.+
T Consensus 321 ~VtV~~yr~PsVsV~p--~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~ 398 (566)
T PHA03269 321 HITVMSYKRPNITVIG--DPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPA 398 (566)
T ss_pred EEEEEEecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccC
Confidence 344433 355555554 567899999999998444443 4789999988774211 1111212222 344422
Q ss_pred cCCCC--CceEEEEEEcCCCCc-c---cceeEEEEeecceEEeCCCceeEeCCCcEEEEEEeCCCCC--cEEEEeeCCcc
Q psy573 87 SRKTD--DGRYQCVVKNVAGTR-E---STDAVLRVLVKPYIIRGPKDTTVSAGSIIVFECSVGGDAV--LTVHWKRLGSA 158 (216)
Q Consensus 87 ~~~~d--~g~y~C~~~~~~~~~-~---~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~i~W~~~~~~ 158 (216)
....| --..+|.+.-..... . +.+..-.|...|.+++ ....|+ ..|.+.--|. ..+.|..++..
T Consensus 399 ~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-----~FedG~---AVCtA~CVP~~~V~l~WlVgD~p 470 (566)
T PHA03269 399 QKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-----EIIDGH---IVCLAKCVPRGVVHFNWWINDIP 470 (566)
T ss_pred ccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-----EEeCCE---EEEecccccCCCceEEEEecCCC
Confidence 22222 234699986332211 1 2233344555565543 222333 4577654543 47899877665
Q ss_pred CCCCCeeee-----cCCeEEEec---CCCCC-CeEEEEEEEc
Q psy573 159 MPEDRMSVL-----PSRSLQLSD---VRLED-GGEYVCEAEN 191 (216)
Q Consensus 159 ~~~~~~~~~-----~~~~l~i~~---~~~~d-~g~y~C~~~n 191 (216)
......... ..+...|.. +...| .-+|+|.+..
T Consensus 471 ~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 471 IEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDG 512 (566)
T ss_pred CCCccceeeccCCCCCCceeecccccccccCCceeEEEEEee
Confidence 433222211 113344444 33333 3489999864
No 391
>KOG4597|consensus
Probab=93.83 E-value=0.12 Score=39.83 Aligned_cols=82 Identities=18% Similarity=0.249 Sum_probs=55.6
Q ss_pred cceEEecCCcEEEEeeCCCCCCCCeeEEee---CCEEeccc---cCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCC
Q psy573 32 KSQRVAAGDTALLECGPPRGHPEPTLVWKK---NGHPIDFE---NSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 32 ~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~---~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
....+.+|+...++|.+ .+.+.+.|.|.+ ++..+... ...+....+-..|.|.+....|+|-|+|.+.+..+.
T Consensus 204 a~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~ 282 (560)
T KOG4597|consen 204 AEWFVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGF 282 (560)
T ss_pred chhhcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccce
Confidence 34567789999999998 788999999976 22222111 111122223357999999999999999999988776
Q ss_pred cccceeEEEE
Q psy573 106 RESTDAVLRV 115 (216)
Q Consensus 106 ~~~~~~~l~v 115 (216)
. ...+.+.+
T Consensus 283 ~-~rdv~c~s 291 (560)
T KOG4597|consen 283 L-RRDVPCSS 291 (560)
T ss_pred e-eccceeee
Confidence 4 33344433
No 392
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.36 E-value=0.41 Score=35.63 Aligned_cols=21 Identities=10% Similarity=0.227 Sum_probs=17.3
Q ss_pred cEEEEEEeCCCCCc--EEEEeeC
Q psy573 135 IIVFECSVGGDAVL--TVHWKRL 155 (216)
Q Consensus 135 ~~~l~C~~~~~p~~--~i~W~~~ 155 (216)
.+.|.|.+.|..+. .+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999887544 5889999
No 393
>PHA02982 hypothetical protein; Provisional
Probab=93.24 E-value=0.53 Score=32.33 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=46.2
Q ss_pred CceeEeCCCcEEEEEEeCC-CCCcEEEEeeCCcc-CC----------------CC--C-eee---ecCCeEEEecCCCCC
Q psy573 126 KDTTVSAGSIIVFECSVGG-DAVLTVHWKRLGSA-MP----------------ED--R-MSV---LPSRSLQLSDVRLED 181 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~~-~p~~~i~W~~~~~~-~~----------------~~--~-~~~---~~~~~l~i~~~~~~d 181 (216)
.+.....++.+.|.|.... ....+..|..+... +. .. . ... ...++|+|.++..+.
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 3445667899999999532 23445788775321 11 00 0 001 134789999999999
Q ss_pred CeEEEEEEEcCCcc
Q psy573 182 GGEYVCEAENAVGK 195 (216)
Q Consensus 182 ~g~y~C~~~n~~~~ 195 (216)
.|=|+|.+....+.
T Consensus 112 ~GCYtc~~ks~~~k 125 (251)
T PHA02982 112 LGCFTCEAKDAEGK 125 (251)
T ss_pred CCceEEEEecCCCc
Confidence 99999999987655
No 394
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=93.09 E-value=1.2 Score=27.10 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=29.3
Q ss_pred cCCeEEEecCCCCCCeEEEEEEEcCCcce-EEEEEEEEE
Q psy573 168 PSRSLQLSDVRLEDGGEYVCEAENAVGKI-SASATLTVQ 205 (216)
Q Consensus 168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~~-~~~~~l~v~ 205 (216)
.+.+|.|..+++.|+|.|.-.+.+..|.. ...+.+.|.
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 55789999999999999999999999984 445666554
No 395
>PHA03052 Hypothetical protein; Provisional
Probab=92.18 E-value=0.6 Score=25.66 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=26.3
Q ss_pred CceeEeCCCcEEEEEEeC---CCCCcEEEEeeCCccC
Q psy573 126 KDTTVSAGSIIVFECSVG---GDAVLTVHWKRLGSAM 159 (216)
Q Consensus 126 ~~~~~~~g~~~~l~C~~~---~~p~~~i~W~~~~~~~ 159 (216)
....+..|..++|.|.+. +...+.+.|.-|+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 556778899999999983 2335569999998776
No 396
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=92.05 E-value=1.4 Score=25.40 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=25.7
Q ss_pred CCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE
Q psy573 54 EPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK 100 (216)
Q Consensus 54 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 100 (216)
.+.+.|+..+... ..............+|+|.+.|.+.
T Consensus 26 ~~~~~l~~~~~k~---------~~~~~~~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 26 KPSLFLENPGKKS---------LETKKLVSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp CEEEEEECSSCEE---------EEESSEEEEESBTCGGSEEEEEEEE
T ss_pred ChhheeeccCccc---------cccceEEEEecCCCCCCEEEEEEEc
Confidence 3466676655443 2223456677788899999999995
No 397
>PHA03052 Hypothetical protein; Provisional
Probab=91.91 E-value=0.83 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.416 Sum_probs=27.8
Q ss_pred cccceEEecCCcEEEEeeCCCCCC--CCeeEEeeCCEEe
Q psy573 30 QPKSQRVAAGDTALLECGPPRGHP--EPTLVWKKNGHPI 66 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~~~~~--~~~~~W~~~~~~~ 66 (216)
.|....+..|.+++|.|.+.-+.+ .+.+.|.-++..+
T Consensus 3 ~P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 3 LPEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CCccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 345678889999999999843332 4578898888776
No 398
>KOG0613|consensus
Probab=91.86 E-value=0.38 Score=41.78 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=52.0
Q ss_pred eEeCCCcEEEEEEeCCCCCcE-EEEeeCCccCCCCCee------eecCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLT-VHWKRLGSAMPEDRMS------VLPSRSLQLSDVRLEDGGEYVCEAENAVGKISASAT 201 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~-i~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~ 201 (216)
.+..+..+.+.|...+.+.+. +.|+++.......... ......+.+..+...+.+.|.|.+.|..|.......
T Consensus 345 ~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~ 424 (1205)
T KOG0613|consen 345 TARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAE 424 (1205)
T ss_pred ccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccch
Confidence 445567789999998888776 9999876543222100 112235777788888999999999999887554443
Q ss_pred EEEE
Q psy573 202 LTVQ 205 (216)
Q Consensus 202 l~v~ 205 (216)
..+.
T Consensus 425 ~~vs 428 (1205)
T KOG0613|consen 425 STVS 428 (1205)
T ss_pred hhcc
Confidence 3343
No 399
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=91.77 E-value=1.7 Score=25.76 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=48.3
Q ss_pred cceEecccceEEecCCcEEEEeeCCCCCCCC-eeEEeeCCEEeccccCceEEEecC--cEEEEcccCCCCCceEEEEEEc
Q psy573 25 EEFRVQPKSQRVAAGDTALLECGPPRGHPEP-TLVWKKNGHPIDFENSKRLRLVDG--TNLAIQDSRKTDDGRYQCVVKN 101 (216)
Q Consensus 25 ~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~~ 101 (216)
..+.+.|+...+..|+++.+.|.. +-+.+ .+.|.-.-... ...... ..+.+.+++. | ..-.|.+.-
T Consensus 4 f~v~v~P~~~vV~~G~Sv~VNCSt--sC~~p~~~GLET~L~k~-------~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C 72 (91)
T PF03921_consen 4 FEVRVSPEEPVVPPGGSVWVNCST--SCPQPEKIGLETSLSKT-------ELDSGPQWKAFQLSNVTE-D-SSPLCFFNC 72 (91)
T ss_dssp S-EEEESSEEEEETTEEEEEEEEE--SSSS-SEEEEESSSEEE-------EEEEETTEEEEEEEEE-S-C-EEEEEEEEE
T ss_pred eEEEEECCccEECCCCCEEEEEcC--CCCCCCcceEEEecCCc-------ccCCCCcEEEEEEEcccc-C-CeEEEEEEc
Confidence 356678888899999999999986 32333 44443221111 000111 2577788876 4 467899885
Q ss_pred CCCCcccceeEEEEeecce
Q psy573 102 VAGTRESTDAVLRVLVKPY 120 (216)
Q Consensus 102 ~~~~~~~~~~~l~v~~~p~ 120 (216)
. +.....+..+.|+.+|.
T Consensus 73 ~-g~Q~~~~~~ItVY~~Pe 90 (91)
T PF03921_consen 73 S-GEQSSASANITVYKPPE 90 (91)
T ss_dssp T-TEEEEEEEEEEEEB--S
T ss_pred C-CeEEEeEEeeEEeCCCC
Confidence 3 44445677788877763
No 400
>PHA03283 envelope glycoprotein E; Provisional
Probab=91.69 E-value=5.7 Score=31.58 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=48.1
Q ss_pred CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecce---------EEeCC------------CceeEeCCCcEE
Q psy573 79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPY---------IIRGP------------KDTTVSAGSIIV 137 (216)
Q Consensus 79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~---------~~~~~------------~~~~~~~g~~~~ 137 (216)
.+.|+|.+++.+++|.|.-...+..+ .....+.|.|..++. ..+.| .......|+++.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 35699999999999999988887655 445566777765211 11111 223555789888
Q ss_pred EEEEeCCC---C--CcEEEEeeC
Q psy573 138 FECSVGGD---A--VLTVHWKRL 155 (216)
Q Consensus 138 l~C~~~~~---p--~~~i~W~~~ 155 (216)
+.-..... + ..+|.|+.-
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEe
Confidence 86654322 1 336889763
No 401
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=91.62 E-value=0.64 Score=36.34 Aligned_cols=77 Identities=17% Similarity=0.282 Sum_probs=12.7
Q ss_pred CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceE--------------------EeCCCceeEeCCCcEEE
Q psy573 79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYI--------------------IRGPKDTTVSAGSIIVF 138 (216)
Q Consensus 79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~--------------------~~~~~~~~~~~g~~~~l 138 (216)
.+.|.|.+++.+|+|.|.-...+..+......+.|.|..+... ...........|+++.+
T Consensus 88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~ 167 (439)
T PF02480_consen 88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL 167 (439)
T ss_dssp ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence 3569999999999999999888766655455566666542111 11122335557888887
Q ss_pred EEEeCCC----C--CcEEEEeeC
Q psy573 139 ECSVGGD----A--VLTVHWKRL 155 (216)
Q Consensus 139 ~C~~~~~----p--~~~i~W~~~ 155 (216)
.-.+... . ..+|.|+.-
T Consensus 168 ~v~l~~~~~d~~~f~~~i~W~~~ 190 (439)
T PF02480_consen 168 SVHLQSEAHDDPPFSLEIDWYYM 190 (439)
T ss_dssp --EEEEEESSS--EEEEEEEEEE
T ss_pred eEEEEeccCCCCCeeEEEEEEEe
Confidence 7665222 1 236889763
No 402
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=91.42 E-value=0.73 Score=27.39 Aligned_cols=66 Identities=20% Similarity=0.287 Sum_probs=38.9
Q ss_pred EEEEEE-eCCCCCcEEEEeeC--CccCCCCCeeeecC------CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEE
Q psy573 136 IVFECS-VGGDAVLTVHWKRL--GSAMPEDRMSVLPS------RSLQLSDVRLEDGGEYVCEAENAVGKISASATLT 203 (216)
Q Consensus 136 ~~l~C~-~~~~p~~~i~W~~~--~~~~~~~~~~~~~~------~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~ 203 (216)
+.-.|. +.|.|+..|+|.-+ |.. .. ......+ +.+.+-.....|.-..+|.+.+..-....++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~-et-q~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEA-EF-QEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCce-ee-eeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 445788 48889999999742 221 10 0001111 2344445555567799999998765555555554
No 403
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=91.27 E-value=5.5 Score=30.57 Aligned_cols=155 Identities=15% Similarity=0.249 Sum_probs=84.4
Q ss_pred eEEecCCcEEEEeeCCC-C-CCCCeeEEeeCCEEec---------------cccCceEEEe---------cCcEEEEccc
Q psy573 34 QRVAAGDTALLECGPPR-G-HPEPTLVWKKNGHPID---------------FENSKRLRLV---------DGTNLAIQDS 87 (216)
Q Consensus 34 ~~~~~G~~~~l~C~~~~-~-~~~~~~~W~~~~~~~~---------------~~~~~~~~~~---------~~~~l~i~~~ 87 (216)
+.+..|..+.|.|...- + ....+..|+-.+-++. ......+.+. ..++|+|.++
T Consensus 274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence 45666999999997621 1 2345778987554331 1111111111 2357999999
Q ss_pred CCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCCCceeEeCC-CcEEEEEEeCCC--CCcEEEEeeCCccCCCCCe
Q psy573 88 RKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGPKDTTVSAG-SIIVFECSVGGD--AVLTVHWKRLGSAMPEDRM 164 (216)
Q Consensus 88 ~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~--p~~~i~W~~~~~~~~~~~~ 164 (216)
....+|-|.|++....... ....-|.|.....+ .-..+| ......|-+... .++++.|.-+|-.......
T Consensus 354 ~I~N~GCY~~~a~~g~~~~-ec~~Cl~V~d~V~f------~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~ 426 (500)
T PHA02914 354 HINNAGCYEAQAFMGKFKE-ECRHCFKVADHVFF------KWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIA 426 (500)
T ss_pred EEEcCCceEEEEecCcchh-hhhhheEeccEEEE------EEEeccCceEEEEEEEEecccCCceeEEEEccEEecCeec
Confidence 9999999999998653221 11222222221111 011132 345667877433 4667999887754322111
Q ss_pred --------eee---cCCeEEEecCCCCC-CeEEEEEEEcCCcc
Q psy573 165 --------SVL---PSRSLQLSDVRLED-GGEYVCEAENAVGK 195 (216)
Q Consensus 165 --------~~~---~~~~l~i~~~~~~d-~g~y~C~~~n~~~~ 195 (216)
... ....+.|.+-...| --.-.|......+.
T Consensus 427 ~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 427 DALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred CcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 111 11346666665555 34667877666554
No 404
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=91.07 E-value=1.9 Score=24.90 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=32.4
Q ss_pred CcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEE-EcCCcceEEEEEEEE
Q psy573 147 VLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEA-ENAVGKISASATLTV 204 (216)
Q Consensus 147 ~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~-~n~~~~~~~~~~l~v 204 (216)
.+.+.|.-.+... ........+......|+|.+.|.| .+..-.......|.+
T Consensus 26 ~~~~~l~~~~~k~------~~~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKS------LETKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEE------EEESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccc------cccceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4456666544321 123455677788889999999999 555544555555444
No 405
>KOG0613|consensus
Probab=89.29 E-value=1.2 Score=39.03 Aligned_cols=160 Identities=15% Similarity=0.082 Sum_probs=91.7
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCe-eEEeeCCEEeccccCceEEE---ecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPT-LVWKKNGHPIDFENSKRLRL---VDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~-~~W~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
++....+..+++.|.. .+.+.+. +.||++...........+.. .....+.+..+...+.+.|.|.+.|..+....
T Consensus 343 ~v~a~d~~~v~m~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~ 421 (1205)
T KOG0613|consen 343 SVTARDNTLVEMPTAL-SGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQT 421 (1205)
T ss_pred eeccccCcceeecccc-cCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccc
Confidence 4566778889999987 5666665 99999766553322221111 12346888899999999999999987765432
Q ss_pred ceeEEEEeecc-----eEEeCCCceeEeCC--CcEEEEEEeCCCCCc--EEEEeeCCccCCCCCeeeecC--CeEEEecC
Q psy573 109 TDAVLRVLVKP-----YIIRGPKDTTVSAG--SIIVFECSVGGDAVL--TVHWKRLGSAMPEDRMSVLPS--RSLQLSDV 177 (216)
Q Consensus 109 ~~~~l~v~~~p-----~~~~~~~~~~~~~g--~~~~l~C~~~~~p~~--~i~W~~~~~~~~~~~~~~~~~--~~l~i~~~ 177 (216)
.... .+...+ .............+ +.+.+.|.+.+.+-+ ..+|++++............. .+|.+.-.
T Consensus 422 ~~~~-~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~ 500 (1205)
T KOG0613|consen 422 IAES-TVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVA 500 (1205)
T ss_pred cchh-hcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeecc
Confidence 2221 222211 11111122233333 678888888777644 456666655443332222222 34566666
Q ss_pred CCCCCeEEEEEEEcCCc
Q psy573 178 RLEDGGEYVCEAENAVG 194 (216)
Q Consensus 178 ~~~d~g~y~C~~~n~~~ 194 (216)
...++|.|.-......+
T Consensus 501 ~~~~~A~~~~a~~~~~~ 517 (1205)
T KOG0613|consen 501 SLSDGAQYTRALRTLQG 517 (1205)
T ss_pred CCCccchhhhhhhccCC
Confidence 67788888655444333
No 406
>PHA03282 envelope glycoprotein E; Provisional
Probab=89.18 E-value=9.4 Score=30.03 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=26.0
Q ss_pred CcEEEEcccCCCCCceEEEEEEcCCCCc-ccceeEEEEe
Q psy573 79 GTNLAIQDSRKTDDGRYQCVVKNVAGTR-ESTDAVLRVL 116 (216)
Q Consensus 79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~~~l~v~ 116 (216)
+.+|.|.+++.+|+|.|.-.+....... +...+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 5679999999999999998875433322 2333455553
No 407
>PHA03189 UL14 tegument protein; Provisional
Probab=87.98 E-value=3.2 Score=30.45 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=16.1
Q ss_pred cccceEEecCCcEEEEeeCC
Q psy573 30 QPKSQRVAAGDTALLECGPP 49 (216)
Q Consensus 30 ~~~~~~~~~G~~~~l~C~~~ 49 (216)
.|.+..+..|+.+++.|.+.
T Consensus 58 spAP~l~pyGdrvtVpC~fp 77 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFP 77 (348)
T ss_pred CCCccccCCCceeeeeeeec
Confidence 45566788999999999873
No 408
>KOG1026|consensus
Probab=87.72 E-value=1.9 Score=36.00 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=81.0
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCcccceeE
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAV 112 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 112 (216)
...+..|..+++.|.. .+.+.+.+.|+..+........... +-.+-...+.+ +.|..++..+.. ...+.
T Consensus 201 ~~~v~~~~~~~~~c~~-~~~~vp~~~~~~~~~~~~~~~~~~~-~c~~~~~~~~~--------~~c~~E~~~~~~-~~~v~ 269 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQ-AGIPVPCHYWFPNCLASSNTNQTSS-LCRSECEVLEN--------DLCIAENAVARS-NPSIL 269 (774)
T ss_pred hhhhcccchheeeeec-ccCCCcceeeecccccccCCCcccc-cccccceeeec--------hhhHHHHhhhhc-Cceee
Confidence 4567789999999998 7889999999887654422111110 00011111111 788887766553 22333
Q ss_pred EEEeecceEEeCCCceeEeCCCcEEEEEE---eCCCCCcEEEEeeCCccCCCCC---eeeec-CCeEEEecCCCCCCeEE
Q psy573 113 LRVLVKPYIIRGPKDTTVSAGSIIVFECS---VGGDAVLTVHWKRLGSAMPEDR---MSVLP-SRSLQLSDVRLEDGGEY 185 (216)
Q Consensus 113 l~v~~~p~~~~~~~~~~~~~g~~~~l~C~---~~~~p~~~i~W~~~~~~~~~~~---~~~~~-~~~l~i~~~~~~d~g~y 185 (216)
+.+..++......... -. .-.|. +.+.+.+...|..++.-+.... ..... ..-+.....+-.+.|.|
T Consensus 270 ~~~~~p~~~~~~~~~~-~~-----~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~ 343 (774)
T KOG1026|consen 270 LVVDLPKAEVLLCSPL-SD-----HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNY 343 (774)
T ss_pred eEEecccccccCCCCc-cc-----cCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcc
Confidence 3333332211111100 00 22233 2345566677777665432111 00111 01122222345578999
Q ss_pred EEEEEcCCcceEEEEEEEEEecc
Q psy573 186 VCEAENAVGKISASATLTVQSKY 208 (216)
Q Consensus 186 ~C~~~n~~~~~~~~~~l~v~~~p 208 (216)
+|.+.+..|.........+...|
T Consensus 344 ~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 344 TLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eeeecccCccccccCcCccccCC
Confidence 99999998876655555555544
No 409
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=87.62 E-value=2.1 Score=32.09 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=16.7
Q ss_pred cEEEEeeCCCCCC-CCeeEEeeC
Q psy573 41 TALLECGPPRGHP-EPTLVWKKN 62 (216)
Q Consensus 41 ~~~l~C~~~~~~~-~~~~~W~~~ 62 (216)
.++|.|.+....| ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999844444 357899999
No 410
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=87.10 E-value=33 Score=33.84 Aligned_cols=178 Identities=12% Similarity=0.107 Sum_probs=97.6
Q ss_pred hhceeeEEeeccceEecccceEEecCCcEEEEeeCCCCCCCCeeEEeeCCE-EeccccCceEEEecCcEEEEcccCCCCC
Q psy573 14 EKKKLKIEMLREEFRVQPKSQRVAAGDTALLECGPPRGHPEPTLVWKKNGH-PIDFENSKRLRLVDGTNLAIQDSRKTDD 92 (216)
Q Consensus 14 ~~~~l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 92 (216)
.+-.+.|+.....+.+......+..|+.++|.+.+ .......+.|..++. ...... +..+ . -.-...
T Consensus 1857 ~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGdgs~~~~t~--------~~t~--~-HsY~~~ 1924 (2740)
T TIGR00864 1857 ASREFFAEEPIFGLELKASKKIAAIGEKVEFQILL-AAGSAVNFRLQIGGAAPEVLQP--------GPRF--S-HSFPRV 1924 (2740)
T ss_pred eeeeEEEEEecceEEEecccccccCCCEEEEEEEe-cCCCceEEEEEeCCCCceeecC--------CCeE--E-eecCCC
Confidence 34455566654566666666678899999999987 444567888877533 221101 1111 1 122334
Q ss_pred ceEEEEEE--cCCCCcccceeEEEEeecc-eEEeCCC-ceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec
Q psy573 93 GRYQCVVK--NVAGTRESTDAVLRVLVKP-YIIRGPK-DTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP 168 (216)
Q Consensus 93 g~y~C~~~--~~~~~~~~~~~~l~v~~~p-~~~~~~~-~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 168 (216)
|.|.-.+. |..+.. .....+.|..+. .+.+... ......|+...+.-.+....+..+.|++.-..+..+......
T Consensus 1925 G~Y~VtV~A~N~Vs~~-~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~ 2003 (2740)
T TIGR00864 1925 DDHMVNLRAKNEVSCA-QANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHM 2003 (2740)
T ss_pred CcEEEEEEEEecccee-eeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeec
Confidence 66665543 444432 233444554442 2222111 112577888888888865556679998764444333332222
Q ss_pred CCeEEEecCCCCCCeEEEEEE--EcCCcceEEEEEEEEEec
Q psy573 169 SRSLQLSDVRLEDGGEYVCEA--ENAVGKISASATLTVQSK 207 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~--~n~~~~~~~~~~l~v~~~ 207 (216)
+..+... ....|.|.-.+ .|..+.......+.|+.+
T Consensus 2004 G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~ 2041 (2740)
T TIGR00864 2004 GKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDA 2041 (2740)
T ss_pred CCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEeh
Confidence 3333222 23588887764 577787766666666643
No 411
>PHA03240 envelope glycoprotein M; Provisional
Probab=87.00 E-value=1.7 Score=30.01 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=39.6
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEee-------CCE----Ee---ccccCce------------EE-EecCcEEEEc
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKK-------NGH----PI---DFENSKR------------LR-LVDGTNLAIQ 85 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~-------~~~----~~---~~~~~~~------------~~-~~~~~~l~i~ 85 (216)
.+.+.+|++|+|.-.- ...+.-.+.||+ ++. .+ .....++ .. .=.+++|.|.
T Consensus 32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~ 110 (258)
T PHA03240 32 EHTTREGDPLLLGGGH-GLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIA 110 (258)
T ss_pred ecccccCCceeeCCcc-cCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEE
Confidence 4678899999997642 335677899998 211 11 1111111 10 1135689999
Q ss_pred ccCCCCCceEE
Q psy573 86 DSRKTDDGRYQ 96 (216)
Q Consensus 86 ~~~~~d~g~y~ 96 (216)
++..+|.|.|.
T Consensus 111 ~vn~sd~~nYc 121 (258)
T PHA03240 111 HLNLSDAGEYC 121 (258)
T ss_pred EEeecCcchhh
Confidence 99999999984
No 412
>PHA03286 envelope glycoprotein E; Provisional
Probab=85.98 E-value=15 Score=28.82 Aligned_cols=75 Identities=16% Similarity=0.051 Sum_probs=48.8
Q ss_pred cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee-----cceEE--e------------CCCceeEeCCCcEEEEE
Q psy573 80 TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV-----KPYII--R------------GPKDTTVSAGSIIVFEC 140 (216)
Q Consensus 80 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~------------~~~~~~~~~g~~~~l~C 140 (216)
..|+|.+++.+++|.|.=...+..+......+.+.|.. +|... . .........|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 56999999999999999988877666556666777742 11111 1 12233555799887766
Q ss_pred EeCCC-----CCcEEEEee
Q psy573 141 SVGGD-----AVLTVHWKR 154 (216)
Q Consensus 141 ~~~~~-----p~~~i~W~~ 154 (216)
..... -..+|.|+.
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEeecccCCCceEEEEEEE
Confidence 54311 134688976
No 413
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=85.02 E-value=6.1 Score=23.49 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=47.8
Q ss_pred EeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeec---CCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573 122 IRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLP---SRSLQLSDVRLEDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 122 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 198 (216)
.+.|....+..|+++.+.|...-..+..+-|.-.-.. ..... =..+.+.+++. ...-.|.+.-.......
T Consensus 7 ~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k-----~~~~~g~~W~~f~LsnV~~--ds~~~C~~~C~g~Q~~~ 79 (91)
T PF03921_consen 7 RVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSK-----TELDSGPQWKAFQLSNVTE--DSSPLCFFNCSGEQSSA 79 (91)
T ss_dssp EEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEE-----EEEEEETTEEEEEEEEE-S--CEEEEEEEEETTEEEEE
T ss_pred EEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCC-----cccCCCCcEEEEEEEcccc--CCeEEEEEEcCCeEEEe
Confidence 3456777889999999999985322223445321100 00111 13467788875 46778999865545677
Q ss_pred EEEEEEEecce
Q psy573 199 SATLTVQSKYL 209 (216)
Q Consensus 199 ~~~l~v~~~p~ 209 (216)
+++|+|-..|+
T Consensus 80 ~~~ItVY~~Pe 90 (91)
T PF03921_consen 80 SANITVYKPPE 90 (91)
T ss_dssp EEEEEEEB--S
T ss_pred EEeeEEeCCCC
Confidence 88888877664
No 414
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=83.96 E-value=6.4 Score=23.55 Aligned_cols=60 Identities=15% Similarity=0.446 Sum_probs=36.5
Q ss_pred EEEEeeCCCCCCCCeeEEeeC--CEE-ec--cccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 42 ALLECGPPRGHPEPTLVWKKN--GHP-ID--FENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~--~~~-~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
+.-.|....+.|...|.|.-+ |.. .+ ....+.+... +.+.+-.....|.-..+|.+....
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~--S~y~lVPs~~~~gk~lTCvV~h~~ 87 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVI--SRYRLVPSREAHKQKLTCIVNYRN 87 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEE--EEEEEeECHHHcCCEeEEEEEecc
Confidence 455798778999999999753 211 10 0111111111 246666777777778999998753
No 415
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=83.37 E-value=5.6 Score=21.77 Aligned_cols=21 Identities=33% Similarity=0.699 Sum_probs=15.0
Q ss_pred EecCCcEEEEeeCCCCCCCCeeEEee
Q psy573 36 VAAGDTALLECGPPRGHPEPTLVWKK 61 (216)
Q Consensus 36 ~~~G~~~~l~C~~~~~~~~~~~~W~~ 61 (216)
+..|++++|. +.+...+.||+
T Consensus 2 v~~G~N~TL~-----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV-----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe-----CCCCCceEEEE
Confidence 5678899884 33556789984
No 416
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=77.17 E-value=22 Score=24.89 Aligned_cols=129 Identities=18% Similarity=0.339 Sum_probs=62.3
Q ss_pred CeeEEeeCCEEeccccCc-eEEEe-cC-----cEEEE-cccCCCCCceEEEEEEcCCCCcc----cceeEEEEeecceEE
Q psy573 55 PTLVWKKNGHPIDFENSK-RLRLV-DG-----TNLAI-QDSRKTDDGRYQCVVKNVAGTRE----STDAVLRVLVKPYII 122 (216)
Q Consensus 55 ~~~~W~~~~~~~~~~~~~-~~~~~-~~-----~~l~i-~~~~~~d~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~ 122 (216)
..+.|+.|+..+...... ..... ++ +.|.+ .+...+..-..+|.+.-...... +.+..-.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 478899999877532211 11111 22 23555 22333334568999864322211 222233445555554
Q ss_pred eCCCceeEeCCCcEEEEEEeCCCC--CcEEEEeeCCccCCCCCeeee------cCCeEEEecCCC--CCCe--EEEEEEE
Q psy573 123 RGPKDTTVSAGSIIVFECSVGGDA--VLTVHWKRLGSAMPEDRMSVL------PSRSLQLSDVRL--EDGG--EYVCEAE 190 (216)
Q Consensus 123 ~~~~~~~~~~g~~~~l~C~~~~~p--~~~i~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~--~d~g--~y~C~~~ 190 (216)
.. ...| ...|.+.--| ...+.|.-++........... ..+...|....+ ...| +|+|.+.
T Consensus 87 v~-----F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 87 VR-----FEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred EE-----ecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 32 2222 4557775444 257999987765322211111 113344433322 2244 9999986
Q ss_pred c
Q psy573 191 N 191 (216)
Q Consensus 191 n 191 (216)
.
T Consensus 159 G 159 (211)
T PF02124_consen 159 G 159 (211)
T ss_pred e
Confidence 4
No 417
>PHA03281 envelope glycoprotein E; Provisional
Probab=77.10 E-value=38 Score=27.48 Aligned_cols=76 Identities=11% Similarity=0.097 Sum_probs=46.8
Q ss_pred CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecc-------eE---------EeC-CCceeEeCCCcEEEEEE
Q psy573 79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP-------YI---------IRG-PKDTTVSAGSIIVFECS 141 (216)
Q Consensus 79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p-------~~---------~~~-~~~~~~~~g~~~~l~C~ 141 (216)
.+.|+|.+++.+++|.|.-..+...+......+.|.|...+ .+ ... -.......|+++.+...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 35799999999999999987775545433445666665422 11 110 11224557888887776
Q ss_pred eCCC-----CCcEEEEee
Q psy573 142 VGGD-----AVLTVHWKR 154 (216)
Q Consensus 142 ~~~~-----p~~~i~W~~ 154 (216)
.... -..++.|+.
T Consensus 377 L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EeeeccCCCceeEEEEEE
Confidence 5332 134688976
No 418
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=73.41 E-value=1e+02 Score=30.82 Aligned_cols=150 Identities=13% Similarity=0.135 Sum_probs=84.4
Q ss_pred EEecCCcEEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEE--cCCCCcccceeE
Q psy573 35 RVAAGDTALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVK--NVAGTRESTDAV 112 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~--~~~~~~~~~~~~ 112 (216)
.+..|..+.+.-.+..+ ....+.|..++..- ... ... ..+..+.|.|.-.+. |..+.. ..+..
T Consensus 1796 ~~~ag~~v~F~a~vstG-snVsw~W~f~~g~s--~~g--------k~v---~~Tf~~aG~ytV~L~AsN~vs~~-~~s~~ 1860 (2740)
T TIGR00864 1796 FFAADSSVCFQGELATG-TNVSWCWAIDGGSS--KMG--------KHA---CMTFPDAGTFAIRLNASNAVSGK-SASRE 1860 (2740)
T ss_pred ceecCcEEEEEEEccCC-CeeEEEEEeCCCCc--ccc--------cee---EEecCCCeEEEEEEEEEcccCcc-eeeee
Confidence 34567777777766333 33477787764321 000 001 145667899987765 444332 44556
Q ss_pred EEEeecc-eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEE--E
Q psy573 113 LRVLVKP-YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCE--A 189 (216)
Q Consensus 113 l~v~~~p-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~--~ 189 (216)
+.|..+. .+........+..|+.+.+.+.....+...+.|...+...... ....+ +. -.....|.|.-. +
T Consensus 1861 ~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~----t~~~t--~~-HsY~~~G~Y~VtV~A 1933 (2740)
T TIGR00864 1861 FFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL----QPGPR--FS-HSFPRVDDHMVNLRA 1933 (2740)
T ss_pred EEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee----cCCCe--EE-eecCCCCcEEEEEEE
Confidence 6666665 3344455557778999999999877778889999876542210 00111 11 112224445443 4
Q ss_pred EcCCcceEEEEEEEEEe
Q psy573 190 ENAVGKISASATLTVQS 206 (216)
Q Consensus 190 ~n~~~~~~~~~~l~v~~ 206 (216)
.|..+.....+.+.|.+
T Consensus 1934 ~N~Vs~~~a~~~V~Vle 1950 (2740)
T TIGR00864 1934 KNEVSCAQANLHIEVLE 1950 (2740)
T ss_pred EeccceeeeeEEEEEEE
Confidence 56667666666665543
No 419
>PHA03240 envelope glycoprotein M; Provisional
Probab=64.14 E-value=18 Score=25.27 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=21.1
Q ss_pred cCCeEEEecCCCCCCeEEEEEEEcCCcc
Q psy573 168 PSRSLQLSDVRLEDGGEYVCEAENAVGK 195 (216)
Q Consensus 168 ~~~~l~i~~~~~~d~g~y~C~~~n~~~~ 195 (216)
.+++|.|-.+..+|.|+|.-.-....|.
T Consensus 103 ~NstL~i~~vn~sd~~nYcr~k~~~~g~ 130 (258)
T PHA03240 103 HNSTLIIAHLNLSDAGEYCRKKCPPKGD 130 (258)
T ss_pred ccceEEEEEEeecCcchhhhccCCCCCC
Confidence 4578999999999999997655444444
No 420
>PHA02935 Hypothetical protein; Provisional
Probab=63.97 E-value=13 Score=25.54 Aligned_cols=87 Identities=22% Similarity=0.221 Sum_probs=45.0
Q ss_pred eeEEeeCCEEeccccCceEEEec-------C---cEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecceEEeCC
Q psy573 56 TLVWKKNGHPIDFENSKRLRLVD-------G---TNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKPYIIRGP 125 (216)
Q Consensus 56 ~~~W~~~~~~~~~~~~~~~~~~~-------~---~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~ 125 (216)
-..||.+.+.+.....++....- + .-|.|..++-+|+|.|.-.-+...|.....+..+.| ...+....
T Consensus 68 ytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisv--kaniidlt 145 (349)
T PHA02935 68 YTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISV--KANIIDLT 145 (349)
T ss_pred cceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEE--EeeeEecc
Confidence 34699988876443333221110 1 136777788899999987766555543232333333 23333222
Q ss_pred CceeEeC--CCcEEEEEEeCC
Q psy573 126 KDTTVSA--GSIIVFECSVGG 144 (216)
Q Consensus 126 ~~~~~~~--g~~~~l~C~~~~ 144 (216)
....... --.+.+.|.+..
T Consensus 146 grvryltrnycevkirceiks 166 (349)
T PHA02935 146 GRVRYLTRNYCEVKIRCEIKS 166 (349)
T ss_pred ceeeeeccccEEEEEEEEEee
Confidence 2222111 235788888643
No 421
>KOG0200|consensus
Probab=59.86 E-value=69 Score=26.77 Aligned_cols=105 Identities=18% Similarity=0.151 Sum_probs=55.4
Q ss_pred CcEEEEcccCCCCCceEEEEEEcCCCCcccceeEEEEeecc----eEEeCCCceeEeCCCcEEEEEEeCCCCCcEEEEee
Q psy573 79 GTNLAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLVKP----YIIRGPKDTTVSAGSIIVFECSVGGDAVLTVHWKR 154 (216)
Q Consensus 79 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~~p----~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~i~W~~ 154 (216)
...+.+..+...+.|.|+|.+.+ . ...+.+. ...+ .....+.......+....+ +...+.+.+.|..
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~--~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 82 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN--I---NLIISLD-DIVIHRPILLAGENANPNTVVTVGVPL---AFSIPQPFIKWGT 82 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec--C---ceeeEee-cccCcccccccCCCCCcceeeccccee---eeecCCCcceeee
Confidence 45678888899999999999998 1 1112222 1111 1111122233344444444 2222355566654
Q ss_pred CCccC-----CC--------------CCeeeecCCeEEEecCCCCCCeEEEEEEEcC
Q psy573 155 LGSAM-----PE--------------DRMSVLPSRSLQLSDVRLEDGGEYVCEAENA 192 (216)
Q Consensus 155 ~~~~~-----~~--------------~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~ 192 (216)
..... .. .+........+.+.++...+.|.|.|...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 139 (609)
T KOG0200|consen 83 NLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRT 139 (609)
T ss_pred eecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCc
Confidence 33110 00 0000001235778899999999999988763
No 422
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=55.99 E-value=39 Score=19.70 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=35.0
Q ss_pred cEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEE
Q psy573 135 IIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISA 198 (216)
Q Consensus 135 ~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~ 198 (216)
...|.+.+.+. ...+.|+.|+..+.... ....+. ......|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~----~~~~~~---~~~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQ----PGHQLF---WQPDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCC----CCCeEE---eCCCCCeeEEEEEEcCCCCEEE
Confidence 45566666555 44999999998873211 112232 2334679999998877776443
No 423
>COG5475 Uncharacterized small protein [Function unknown]
Probab=54.58 E-value=32 Score=18.21 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=14.8
Q ss_pred EEEcccCCCCCceEEEEEEcCCCC
Q psy573 82 LAIQDSRKTDDGRYQCVVKNVAGT 105 (216)
Q Consensus 82 l~i~~~~~~d~g~y~C~~~~~~~~ 105 (216)
+++...+. .|.|.|.+.+..+.
T Consensus 20 Mtvs~~ss--~Gmy~C~Wf~g~g~ 41 (60)
T COG5475 20 MTVSGYSS--DGMYECRWFDGYGV 41 (60)
T ss_pred EEEecccc--CCeEEEEEecCCCc
Confidence 44444433 29999999987764
No 424
>KOG3611|consensus
Probab=54.49 E-value=38 Score=28.92 Aligned_cols=61 Identities=20% Similarity=0.461 Sum_probs=37.4
Q ss_pred cEEEEeeCCCCCCCCeeEEeeCCE----EeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCC
Q psy573 41 TALLECGPPRGHPEPTLVWKKNGH----PIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 41 ~~~l~C~~~~~~~~~~~~W~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
...|.|.. ......+.||.... ...............+.+.+..++..|.|.|.|.+....
T Consensus 571 ~~~l~c~~--~~~~a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~~~~G~y~c~~~e~~ 635 (737)
T KOG3611|consen 571 SEVLRCVP--SSNQAPVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQKLDGGTYPCYADESS 635 (737)
T ss_pred cceeeccc--cccccceeeEeeccCccccceeccCcceeecccCceeEEEEeeccCcccccccccCc
Confidence 57888965 33444588984221 111122222223334558888899999999999987644
No 425
>PHA03282 envelope glycoprotein E; Provisional
Probab=52.46 E-value=35 Score=27.08 Aligned_cols=37 Identities=30% Similarity=0.346 Sum_probs=26.9
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcc--eEEEEEEEEE
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGK--ISASATLTVQ 205 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~--~~~~~~l~v~ 205 (216)
+.+|.|.+++.+|+|.|+-.+...... +...+.|.|.
T Consensus 123 n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 123 NGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred cceEEEeeccccCCceEEEEecCCCCchhheEEEEEEec
Confidence 567999999999999999997544333 4444555554
No 426
>PHA03283 envelope glycoprotein E; Provisional
Probab=50.07 E-value=58 Score=26.35 Aligned_cols=38 Identities=16% Similarity=0.089 Sum_probs=32.0
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEEe
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQS 206 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~~ 206 (216)
.+.|.|.+...+++|.|+-...+..+.....+.|.|+.
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~ 170 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKK 170 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecC
Confidence 46699999999999999999998777666667778876
No 427
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=49.06 E-value=45 Score=18.38 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=33.7
Q ss_pred EEEEeeCCccCCCCCeeeecC--CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEE
Q psy573 149 TVHWKRLGSAMPEDRMSVLPS--RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTV 204 (216)
Q Consensus 149 ~i~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v 204 (216)
...|++++.......+.+... .+..-....+...|.+...+....|..-....+.|
T Consensus 8 ~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 8 YHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 467998887543222212111 12333344557899999999988888766666554
No 428
>PHA03112 IL-18 binding protein; Provisional
Probab=46.80 E-value=80 Score=20.60 Aligned_cols=29 Identities=17% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEecCCcEEEEeeCCCCCCC-CeeEEeeCC
Q psy573 35 RVAAGDTALLECGPPRGHPE-PTLVWKKNG 63 (216)
Q Consensus 35 ~~~~G~~~~l~C~~~~~~~~-~~~~W~~~~ 63 (216)
.-.+|+.+.|.|.+....|. .-+.|..++
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 34679999999998433354 467899654
No 429
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=44.70 E-value=76 Score=21.28 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=20.1
Q ss_pred EEEEcccCCCCCceEEEEEEcCC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
-|.|.+.+.+|+|.|.-.+.-..
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECC
Confidence 49999999999999999987543
No 430
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=44.50 E-value=66 Score=19.00 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=8.2
Q ss_pred CCCceEEEEEEc
Q psy573 90 TDDGRYQCVVKN 101 (216)
Q Consensus 90 ~d~g~y~C~~~~ 101 (216)
+--|.|+|+...
T Consensus 73 ~~~GayyCegk~ 84 (96)
T PF10430_consen 73 EAIGAYYCEGKV 84 (96)
T ss_dssp S--EEEEEEEEE
T ss_pred cccceEEEEEEe
Confidence 344899999874
No 431
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=44.08 E-value=54 Score=17.84 Aligned_cols=30 Identities=13% Similarity=0.252 Sum_probs=22.2
Q ss_pred ceEEecCCcEEEEeeCCCCCCCCeeEEeeCC
Q psy573 33 SQRVAAGDTALLECGPPRGHPEPTLVWKKNG 63 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~~~~~~~~W~~~~ 63 (216)
+..+..|+.+.|.... .......+.|..++
T Consensus 5 ~~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 5 PTYVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp CSCEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred CCEEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 3457789999999976 44455688998877
No 432
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=38.94 E-value=32 Score=18.98 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=14.9
Q ss_pred EEEeeCCCCCCCCeeEEeeCCEEe
Q psy573 43 LLECGPPRGHPEPTLVWKKNGHPI 66 (216)
Q Consensus 43 ~l~C~~~~~~~~~~~~W~~~~~~~ 66 (216)
+|+|.. +...-+.||-++..+
T Consensus 2 tltC~s---~~sLPiswYcN~TRL 22 (71)
T PF11049_consen 2 TLTCPS---NASLPISWYCNGTRL 22 (71)
T ss_pred ceecCC---CCCCcccEEECCcee
Confidence 578854 334457899998876
No 433
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=38.81 E-value=1.1e+02 Score=20.64 Aligned_cols=28 Identities=21% Similarity=0.175 Sum_probs=21.8
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCcceE
Q psy573 170 RSLQLSDVRLEDGGEYVCEAENAVGKIS 197 (216)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~ 197 (216)
-.|.|.+.+.+|+|.|.-.+.-......
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~~~~ 151 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGANKA 151 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCCCCC
Confidence 4589999999999999998875544333
No 434
>KOG1026|consensus
Probab=38.09 E-value=26 Score=29.83 Aligned_cols=71 Identities=31% Similarity=0.325 Sum_probs=44.6
Q ss_pred eeEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeee--cCCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 128 TTVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVL--PSRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 128 ~~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
..+..+..+.+.|.+.+.+.+.+.|+.++........... .+....+. ++.|...|..+....++.+.+.
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~~~--------~~~c~~E~~~~~~~~~v~~~~~ 273 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEVLE--------NDLCIAENAVARSNPSILLVVD 273 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccccccccceeee--------chhhHHHHhhhhcCceeeeEEe
Confidence 4566788999999999999999999887654332111110 01111111 1888888888876666555554
Q ss_pred e
Q psy573 206 S 206 (216)
Q Consensus 206 ~ 206 (216)
.
T Consensus 274 ~ 274 (774)
T KOG1026|consen 274 L 274 (774)
T ss_pred c
Confidence 3
No 435
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=36.95 E-value=37 Score=17.66 Aligned_cols=17 Identities=18% Similarity=0.599 Sum_probs=12.9
Q ss_pred CCCCeEEEEEEEcCCcc
Q psy573 179 LEDGGEYVCEAENAVGK 195 (216)
Q Consensus 179 ~~d~g~y~C~~~n~~~~ 195 (216)
.+.+..|.|.+.|..|.
T Consensus 7 kdssnsflctvqnkng~ 23 (65)
T PF13220_consen 7 KDSSNSFLCTVQNKNGD 23 (65)
T ss_pred ecCCCceEEEEecccHh
Confidence 34466899999998874
No 436
>PHA03189 UL14 tegument protein; Provisional
Probab=35.49 E-value=1.9e+02 Score=21.77 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=17.4
Q ss_pred cCCCCCCeEEEEEEEcCCcc-eEEEE
Q psy573 176 DVRLEDGGEYVCEAENAVGK-ISASA 200 (216)
Q Consensus 176 ~~~~~d~g~y~C~~~n~~~~-~~~~~ 200 (216)
++..+-+|.|.|...|..-. ....+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf 164 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRF 164 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEe
Confidence 45566799999999887543 44443
No 437
>PHA03290 envelope glycoprotein I; Provisional
Probab=32.60 E-value=1.6e+02 Score=22.46 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=20.6
Q ss_pred cEEEEcccCCCCCceEEEEEEcCC
Q psy573 80 TNLAIQDSRKTDDGRYQCVVKNVA 103 (216)
Q Consensus 80 ~~l~i~~~~~~d~g~y~C~~~~~~ 103 (216)
--|.|.+...+|+|.|.-.+.-..
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldg 152 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDH 152 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCC
Confidence 359999999999999999987543
No 438
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=30.97 E-value=1e+02 Score=18.41 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=20.2
Q ss_pred eeEEeeccceEecccceEEecCCcEEEE
Q psy573 18 LKIEMLREEFRVQPKSQRVAAGDTALLE 45 (216)
Q Consensus 18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~ 45 (216)
+.+-...-.+...|..+.+..|+.+++.
T Consensus 3 v~~g~~~g~~~F~P~~i~v~~G~~V~~~ 30 (99)
T TIGR02656 3 VKMGADKGALVFEPAKISIAAGDTVEWV 30 (99)
T ss_pred EEEecCCCceeEeCCEEEECCCCEEEEE
Confidence 3443334467778888999999998886
No 439
>PHA03290 envelope glycoprotein I; Provisional
Probab=29.30 E-value=1.8e+02 Score=22.21 Aligned_cols=37 Identities=14% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
+-.|.|.+...+|+|.|.-.+.-.......-+.+.+.
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~ 164 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLN 164 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEE
Confidence 3458999999999999999987554433333333333
No 440
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=28.57 E-value=83 Score=18.78 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=22.0
Q ss_pred eeEEeeccceEecccceEEecCCcEEEEee
Q psy573 18 LKIEMLREEFRVQPKSQRVAAGDTALLECG 47 (216)
Q Consensus 18 l~v~~~~~~~~~~~~~~~~~~G~~~~l~C~ 47 (216)
+.+......+...|..+.+..|+.+.+.=.
T Consensus 3 v~~~~~~~~~~F~P~~i~V~~G~tV~~~n~ 32 (99)
T PF00127_consen 3 VSVTVDMGDMAFDPSEITVKAGDTVTFVNN 32 (99)
T ss_dssp EEEEETTSTSSEESSEEEEETTEEEEEEEE
T ss_pred EEEEEeCCccEEeCCEEEECCCCEEEEEEC
Confidence 444444456778888999999999887653
No 441
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=28.13 E-value=1.2e+02 Score=16.98 Aligned_cols=61 Identities=16% Similarity=0.231 Sum_probs=26.3
Q ss_pred eEeCCCcEEEEEEeCCCCCcEEEEeeCCccCCCCCeeeecCCeEEEecCCCCCCeEEEEEEEcCCcceEEE
Q psy573 129 TVSAGSIIVFECSVGGDAVLTVHWKRLGSAMPEDRMSVLPSRSLQLSDVRLEDGGEYVCEAENAVGKISAS 199 (216)
Q Consensus 129 ~~~~g~~~~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~ 199 (216)
....+..+.|.|. .+...|.+.-+|...... +.+.-..+.....+.+.+.+....|..+..
T Consensus 11 ~~~~~~~v~l~~~---~~~~~I~YT~DGs~Pt~~-------s~~Y~~Pi~i~~~~~vka~a~~~~g~~s~v 71 (75)
T PF03174_consen 11 TYDEGQTVTLSSD---TPGATIYYTLDGSEPTKS-------SPLYTGPITIPESGTVKARAFDNGGNVSEV 71 (75)
T ss_dssp EEEETTEEEEE-S---STTSEEEEESSSSSS-----------EE--CCC--B--S--EEEEE-TTS-B---
T ss_pred cEecCeEEEEEeC---CCCCEEEEEcCCCccccc-------CcccCcCEEeCCCcEEEEEEEcCCCCcCcc
Confidence 4444677888883 334577777777654221 122233455555666777777666554443
No 442
>PHA03292 envelope glycoprotein I; Provisional
Probab=26.57 E-value=2.1e+02 Score=22.32 Aligned_cols=35 Identities=26% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEcccCCCCCceEEEEEEcCCCCcccceeEEEEee
Q psy573 82 LAIQDSRKTDDGRYQCVVKNVAGTRESTDAVLRVLV 117 (216)
Q Consensus 82 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~l~v~~ 117 (216)
|.|.+...+|+|.|.-.+.-..... ...+.+.+..
T Consensus 130 L~I~~P~~~DSGiY~LRV~Ldga~~-aDvF~lsvfV 164 (413)
T PHA03292 130 LNITGPQPADSGAYILRVKLDHAPT-ADVFGLSAFV 164 (413)
T ss_pred EEeCCCCcccceeEEEEEEeCCCcc-CceeEEEEEE
No 443
>PHA03286 envelope glycoprotein E; Provisional
Probab=26.08 E-value=2.8e+02 Score=22.28 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcc-eEEEEEEEEE
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGK-ISASATLTVQ 205 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~-~~~~~~l~v~ 205 (216)
.+.|.|.+.+..++|.|+-...|..+. ....+.|.|+
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 466999999999999999999988776 4445666775
No 444
>PHA03289 envelope glycoprotein I; Provisional
Probab=25.36 E-value=2.2e+02 Score=21.65 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=20.5
Q ss_pred EEEEcccCCCCCceEEEEEEcCCC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNVAG 104 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~~~ 104 (216)
-|.|.+.+.+|+|.|.-.+.-...
T Consensus 123 LL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 123 LLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCC
Confidence 599999999999999999885433
No 445
>PRK02710 plastocyanin; Provisional
Probab=22.80 E-value=1.4e+02 Score=18.59 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=16.9
Q ss_pred ceEecccceEEecCCcEEEE
Q psy573 26 EFRVQPKSQRVAAGDTALLE 45 (216)
Q Consensus 26 ~~~~~~~~~~~~~G~~~~l~ 45 (216)
.+...|..+.+..|+.+++.
T Consensus 41 ~~~F~P~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 41 MLAFEPSTLTIKAGDTVKWV 60 (119)
T ss_pred eeEEeCCEEEEcCCCEEEEE
Confidence 56778888999999998886
No 446
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=22.65 E-value=1.7e+02 Score=16.96 Aligned_cols=34 Identities=12% Similarity=0.218 Sum_probs=21.5
Q ss_pred ceEEecCCcEEEEeeCCCC-C---CCCeeEEeeCCEEe
Q psy573 33 SQRVAAGDTALLECGPPRG-H---PEPTLVWKKNGHPI 66 (216)
Q Consensus 33 ~~~~~~G~~~~l~C~~~~~-~---~~~~~~W~~~~~~~ 66 (216)
...+..|+.+.+...+... . ....+.||.++...
T Consensus 12 ~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~ 49 (101)
T PF07705_consen 12 PSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSV 49 (101)
T ss_dssp -SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEE
T ss_pred CCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCcee
Confidence 3467789998888876321 1 12367788887765
No 447
>PHA03281 envelope glycoprotein E; Provisional
Probab=22.11 E-value=3e+02 Score=22.81 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=30.7
Q ss_pred CCeEEEecCCCCCCeEEEEEEEcCCcceEE-EEEEEEEecc
Q psy573 169 SRSLQLSDVRLEDGGEYVCEAENAVGKISA-SATLTVQSKY 208 (216)
Q Consensus 169 ~~~l~i~~~~~~d~g~y~C~~~n~~~~~~~-~~~l~v~~~p 208 (216)
.+.|.|.+....++|.|+-......|.... .+.|+|+..+
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~ 337 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDE 337 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCc
Confidence 357899999999999999988876665444 5667777544
No 448
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.93 E-value=2.8e+02 Score=21.13 Aligned_cols=36 Identities=22% Similarity=0.146 Sum_probs=25.5
Q ss_pred CeEEEecCCCCCCeEEEEEEEcCCcceEEEEEEEEE
Q psy573 170 RSLQLSDVRLEDGGEYVCEAENAVGKISASATLTVQ 205 (216)
Q Consensus 170 ~~l~i~~~~~~d~g~y~C~~~n~~~~~~~~~~l~v~ 205 (216)
-.|.|.+.+.+|+|.|.-.+.-.......-+.+.+.
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga~~sDvF~lsv~ 157 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGRNKSDIFRTSVF 157 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCCccCceEEEEEE
Confidence 368999999999999999987554444344444433
No 449
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=21.24 E-value=86 Score=25.03 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=17.0
Q ss_pred EEEEcccCCCCCceEEEEEEcC
Q psy573 81 NLAIQDSRKTDDGRYQCVVKNV 102 (216)
Q Consensus 81 ~l~i~~~~~~d~g~y~C~~~~~ 102 (216)
.|.+.|+..+++|.|.|.+...
T Consensus 270 ~l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 270 DLQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp SEEESS--GGG-EEEEEEEEET
T ss_pred ceEecCCCcccCceEEEEEEEC
Confidence 5999999999999999998754
No 450
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=20.44 E-value=5.4e+02 Score=22.18 Aligned_cols=55 Identities=22% Similarity=0.338 Sum_probs=33.7
Q ss_pred EEEEeeCCCCCCCCeeEEeeCCEEeccccCceEEEecCcEEEEcccCCCCCceEEEEEEcCCCCccc
Q psy573 42 ALLECGPPRGHPEPTLVWKKNGHPIDFENSKRLRLVDGTNLAIQDSRKTDDGRYQCVVKNVAGTRES 108 (216)
Q Consensus 42 ~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 108 (216)
+.|.-.. ......+.|+-+|..+......+. . .-...+.|.|+-.+....|...+
T Consensus 672 ~~l~l~~--~g~~~~~~W~lng~~l~~~~~~~~-------~---~w~~~~~G~~~ltVid~~G~~~s 726 (733)
T COG4953 672 VTLKLIA--QGGRGPIYWFLNGEPLGEASRNRP-------V---TWKPEDAGYYKLTVIDASGRSAS 726 (733)
T ss_pred eEEEEEc--CCCcceeEEEeCCcCccccccCCc-------c---eeccCCCCeEEEEEEccCCceee
Confidence 4555543 223457899999998844322111 1 12456789999999887776433
Done!