BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5731
(159 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24256|BARH2_DROME Homeobox protein B-H2 OS=Drosophila melanogaster GN=B-H2 PE=1 SV=3
Length = 645
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 58/91 (63%), Gaps = 15/91 (16%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG--PTYGCWPYQGGGTTQ------PS 53
W RTKWKRQTAVGLELLAEAGNYAAFQRLYGG P WPY Q PS
Sbjct: 427 WYQNRRTKWKRQTAVGLELLAEAGNYAAFQRLYGGATPYLSAWPYAAAAAAQSPHGATPS 486
Query: 54 AADLYYRQAAVAAAAVSTLQK---PLAYRLY 81
A D+YYRQ AAA + +QK P +YR+Y
Sbjct: 487 AIDIYYRQ----AAAAAAMQKPSLPASYRMY 513
>sp|P22544|BARH1_DROAN Homeobox protein B-H1 OS=Drosophila ananassae GN=B-H1 PE=2 SV=1
Length = 606
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/92 (57%), Positives = 58/92 (63%), Gaps = 16/92 (17%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGG-PTYGCWPY-----------QGGGT 49
W RTKW RQTAVGLELLAEAGN+AAFQRLYGG P G WPY G
Sbjct: 378 WYQNRRTKWMRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAGAAAAAAHGA 437
Query: 50 TQPSAADLYYRQAAVAAAAVSTLQKPLAYRLY 81
T ++ D+YYRQAA AAA +QKPL Y LY
Sbjct: 438 TPHTSIDIYYRQAAAAAA----MQKPLPYNLY 465
>sp|Q24255|BARH1_DROME Homeobox protein B-H1 OS=Drosophila melanogaster GN=B-H1 PE=2 SV=2
Length = 544
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 54/86 (62%), Gaps = 10/86 (11%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY------GCWPYQGGGTTQPSAA 55
W RTKWKRQTAVGLELLAEAGN+AAFQRLYGG Y G T +
Sbjct: 346 WYQNRRTKWKRQTAVGLELLAEAGNFAAFQRLYGGSPYLGAWPYAAAAGAAHGATPHTNI 405
Query: 56 DLYYRQAAVAAAAVSTLQKPLAYRLY 81
D+YYRQAA AAA +QKPL Y LY
Sbjct: 406 DIYYRQAAAAAA----MQKPLPYNLY 427
>sp|Q9BZE3|BARH1_HUMAN BarH-like 1 homeobox protein OS=Homo sapiens GN=BARHL1 PE=2 SV=1
Length = 327
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
W RTKWKRQTAVGLELLAEAGNY+A QR++ P + +P P AA YR
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282
Query: 62 AAVAAAAVSTLQKPLAYRL 80
+ A LQ+PL R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298
>sp|P63156|BARH1_RAT BarH-like 1 homeobox protein OS=Rattus norvegicus GN=Barhl1 PE=2
SV=1
Length = 327
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
W RTKWKRQTAVGLELLAEAGNY+A QR++ P + +P P AA YR
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282
Query: 62 AAVAAAAVSTLQKPLAYRL 80
+ A LQ+PL R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298
>sp|P63157|BARH1_MOUSE BarH-like 1 homeobox protein OS=Mus musculus GN=Barhl1 PE=2 SV=1
Length = 327
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/79 (48%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQ 61
W RTKWKRQTAVGLELLAEAGNY+A QR++ P + +P P AA YR
Sbjct: 225 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF--YPQSLVSNLDPGAALYLYRG 282
Query: 62 AAVAAAAVSTLQKPLAYRL 80
+ A LQ+PL R+
Sbjct: 283 PSAPPPA---LQRPLVPRI 298
>sp|Q9NY43|BARH2_HUMAN BarH-like 2 homeobox protein OS=Homo sapiens GN=BARHL2 PE=2 SV=2
Length = 387
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
W RTKWKRQTAVGLELLAEAGNY+A QR++ P +
Sbjct: 279 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 316
>sp|Q8VIB5|BARH2_MOUSE BarH-like 2 homeobox protein OS=Mus musculus GN=Barhl2 PE=2 SV=2
Length = 384
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
W RTKWKRQTAVGLELLAEAGNY+A QR++ P +
Sbjct: 276 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 313
>sp|O88181|BARH2_RAT BarH-like 2 homeobox protein OS=Rattus norvegicus GN=Barhl2 PE=2
SV=1
Length = 384
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/38 (68%), Positives = 30/38 (78%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
W RTKWKRQTAVGLELLAEAGNY+A QR++ P +
Sbjct: 276 WYQNRRTKWKRQTAVGLELLAEAGNYSALQRMFPSPYF 313
>sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 OS=Caenorhabditis elegans GN=ceh-31 PE=4
SV=2
Length = 260
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRL 33
W RTKWKRQ +VG++LL +AGN AA Q+L
Sbjct: 141 WYQNRRTKWKRQASVGMDLLHDAGNMAAVQQL 172
>sp|A8XJD0|HM30_CAEBR Homeobox protein ceh-30 OS=Caenorhabditis briggsae GN=ceh-30 PE=3
SV=1
Length = 233
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
W RTKWKRQ G++LL+E GN +A Q L Y
Sbjct: 135 WYQNRRTKWKRQATSGMDLLSEPGNLSAVQNLIRSSPY 172
>sp|Q22909|HM30_CAEEL Homeobox protein ceh-30 OS=Caenorhabditis elegans GN=ceh-30 PE=2
SV=2
Length = 237
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 2 WLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
W RTKWKRQ G++LL+E GN +A Q L Y
Sbjct: 142 WYQNRRTKWKRQATSGMDLLSEPGNLSAVQNLIRSSPY 179
>sp|P54896|ARGC_STRC2 N-acetyl-gamma-glutamyl-phosphate reductase OS=Streptomyces
clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 /
NBRC 13307 / NCIMB 12785 / NRRL 3585 / VKM Ac-602)
GN=argC PE=3 SV=2
Length = 341
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 49/130 (37%), Gaps = 32/130 (24%)
Query: 30 FQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLAYRLYPGVPA--- 86
++R YG P GCWPY G P A + +A LA L+P V A
Sbjct: 108 WERFYGSPWRGCWPY--GLPESPGAREALAGARRIAVPGCYPTAVTLA--LFPAVGAGLV 163
Query: 87 ----------TANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPD 136
T+ A +L P L A + S+S Y A+GG+ HTP+
Sbjct: 164 DREVVTAVSGTSGAGRALKPHLLGAEVMGSVSPY--------------AVGGTH-RHTPE 208
Query: 137 SQPESVDVEE 146
S V +
Sbjct: 209 IAQNSTAVTD 218
>sp|A3FEM2|FEV_DANRE Protein FEV OS=Danio rerio GN=fev PE=2 SV=1
Length = 235
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 12/70 (17%)
Query: 51 QPSAAD--LYYRQAAVAAAAVSTLQK---------PLAYRLYPGVPATANASHSLSPPG- 98
QPS+ + +Y Q+ A S + K P + +PG P T SH+L PPG
Sbjct: 147 QPSSTEQAIYKFQSNFAPIQFSGISKLNLVAPGVGPSGFSYWPGSPPTLYHSHNLQPPGP 206
Query: 99 LAATSLSSIS 108
A S S +S
Sbjct: 207 FGAVSASHLS 216
>sp|Q9FYH1|HAC2_ARATH Histone acetyltransferase HAC2 OS=Arabidopsis thaliana GN=HAC2 PE=2
SV=2
Length = 1367
Score = 29.6 bits (65), Expect = 8.9, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 102 TSLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPDSQPESVDVEESSNDSPSNNK 156
T L + S+ R C +++ GS GS + + + ++ NDSPS++K
Sbjct: 89 TCLIPVPSFEEAATNARRCLNTSSIPGSSGSASETNSGSDITKQDFKNDSPSDSK 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,937,387
Number of Sequences: 539616
Number of extensions: 2441480
Number of successful extensions: 6053
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5987
Number of HSP's gapped (non-prelim): 98
length of query: 159
length of database: 191,569,459
effective HSP length: 108
effective length of query: 51
effective length of database: 133,290,931
effective search space: 6797837481
effective search space used: 6797837481
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)