Query psy5731
Match_columns 159
No_of_seqs 67 out of 69
Neff 2.6
Searched_HMMs 46136
Date Fri Aug 16 16:35:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5731.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5731hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0488|consensus 99.4 1.5E-13 3.2E-18 118.0 0.7 41 1-47 218-258 (309)
2 KOG0485|consensus 99.0 1.3E-10 2.8E-15 99.6 1.2 23 1-23 150-172 (268)
3 KOG0489|consensus 98.3 7.4E-08 1.6E-12 80.4 -1.5 20 1-20 205-224 (261)
4 KOG0844|consensus 97.9 2.2E-05 4.9E-10 70.6 6.1 19 1-19 227-245 (408)
5 KOG0847|consensus 97.8 4.1E-06 8.9E-11 72.6 -0.1 19 1-19 213-231 (288)
6 KOG0492|consensus 97.5 5.1E-05 1.1E-09 65.2 1.6 25 1-25 190-214 (246)
7 KOG0842|consensus 97.4 9E-05 1.9E-09 65.1 2.8 16 1-16 199-214 (307)
8 KOG0483|consensus 97.3 3.3E-05 7.2E-10 63.9 -0.9 14 1-14 96-109 (198)
9 KOG0850|consensus 97.1 0.00012 2.7E-09 62.9 0.6 15 1-15 168-182 (245)
10 KOG0494|consensus 97.1 0.00014 3E-09 64.4 0.5 29 1-29 187-217 (332)
11 KOG0484|consensus 97.1 0.00016 3.6E-09 56.9 0.4 25 1-25 63-87 (125)
12 KOG0490|consensus 96.5 0.00077 1.7E-08 52.1 0.3 15 1-15 106-120 (235)
13 KOG0848|consensus 96.3 0.0016 3.5E-08 57.8 1.2 18 1-18 245-262 (317)
14 KOG2251|consensus 95.6 0.004 8.6E-08 53.4 0.6 16 1-16 83-98 (228)
15 COG5576 Homeodomain-containing 94.5 0.011 2.3E-07 47.3 0.1 21 1-21 97-117 (156)
16 KOG4577|consensus 94.3 0.012 2.7E-07 53.0 -0.0 14 1-14 213-226 (383)
17 KOG0849|consensus 91.4 0.047 1E-06 48.1 -0.5 14 1-14 222-235 (354)
18 KOG0486|consensus 89.6 0.19 4E-06 45.6 1.6 15 1-15 158-172 (351)
19 KOG3802|consensus 88.3 0.12 2.5E-06 47.6 -0.6 15 1-15 340-354 (398)
20 PF13815 Dzip-like_N: Iguana/D 34.5 41 0.00088 25.1 2.6 32 8-39 10-41 (118)
21 KOG1924|consensus 30.9 1.1E+02 0.0023 31.9 5.5 12 125-136 587-598 (1102)
22 PF04617 Hox9_act: Hox9 activa 29.0 63 0.0014 27.1 3.1 38 103-140 3-41 (182)
23 TIGR00540 hemY_coli hemY prote 26.0 40 0.00086 29.1 1.5 32 2-34 75-107 (409)
24 PF05783 DLIC: Dynein light in 25.1 58 0.0012 30.3 2.4 28 102-129 397-424 (472)
25 PRK10747 putative protoheme IX 22.6 57 0.0012 28.2 1.8 33 2-35 75-108 (398)
26 KOG1924|consensus 22.5 2.2E+02 0.0047 29.8 6.0 9 73-81 526-534 (1102)
No 1
>KOG0488|consensus
Probab=99.35 E-value=1.5e-13 Score=118.03 Aligned_cols=41 Identities=49% Similarity=0.654 Sum_probs=33.4
Q ss_pred CCccccchhhhhhhhhhHHHHHHhCChHHHHhhhcCCCCCCCCCCCC
Q psy5731 1 MWLTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGG 47 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEllaeagn~aA~Qrl~~~p~~~~wpY~~~ 47 (159)
|||||||||||||+++|.|++.+++|+.+ .+.+..+++...
T Consensus 218 tWfQNRRtKWKrq~a~g~~~~~~~~~~~~------~p~~~~~~~~~~ 258 (309)
T KOG0488|consen 218 TWFQNRRTKWKRQTAEGGELLYQAGNSSA------LPYLSLQPTAEQ 258 (309)
T ss_pred HHHhhhhHHHHHHHHhhhccccccccccC------cccccccccccc
Confidence 79999999999999999999999999766 345544555444
No 2
>KOG0485|consensus
Probab=98.98 E-value=1.3e-10 Score=99.63 Aligned_cols=23 Identities=43% Similarity=0.780 Sum_probs=21.3
Q ss_pred CCccccchhhhhhhhhhHHHHHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLELLAE 23 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEllae 23 (159)
|||||||||||||.+++||.++-
T Consensus 150 IWFQNRRnKwKRq~aad~ea~sl 172 (268)
T KOG0485|consen 150 IWFQNRRNKWKRQYAADLEAASL 172 (268)
T ss_pred hhhhhhhHHHHHHHhhhhhhhhc
Confidence 79999999999999999997655
No 3
>KOG0489|consensus
Probab=98.30 E-value=7.4e-08 Score=80.41 Aligned_cols=20 Identities=25% Similarity=0.685 Sum_probs=17.1
Q ss_pred CCccccchhhhhhhhhhHHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLEL 20 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEl 20 (159)
|||||||+||||....+.+.
T Consensus 205 IWFQNRRMK~Kk~~k~~~~~ 224 (261)
T KOG0489|consen 205 IWFQNRRMKWKKENKAKSSQ 224 (261)
T ss_pred HHHHHHHHHHHHhhcccccc
Confidence 89999999999998766554
No 4
>KOG0844|consensus
Probab=97.90 E-value=2.2e-05 Score=70.63 Aligned_cols=19 Identities=32% Similarity=0.316 Sum_probs=16.1
Q ss_pred CCccccchhhhhhhhhhHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLE 19 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLE 19 (159)
+||||||.|.|||..+.-|
T Consensus 227 VWFQNRRMKDKRQRlamaW 245 (408)
T KOG0844|consen 227 VWFQNRRMKDKRQRLAMAW 245 (408)
T ss_pred hhhhhchhhhhhhhhhccC
Confidence 6999999999999866444
No 5
>KOG0847|consensus
Probab=97.81 E-value=4.1e-06 Score=72.62 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=16.2
Q ss_pred CCccccchhhhhhhhhhHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLE 19 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLE 19 (159)
+|||||||||++.-+.++.
T Consensus 213 VWFQNRRTKWRKkhAaEma 231 (288)
T KOG0847|consen 213 VWFQNRRTKWRKKHAAEMA 231 (288)
T ss_pred HHHhcchhhhhhhhccchh
Confidence 6999999999998876554
No 6
>KOG0492|consensus
Probab=97.46 E-value=5.1e-05 Score=65.17 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCccccchhhhhhhhhhHHHHHHhC
Q psy5731 1 MWLTAVRTKWKRQTAVGLELLAEAG 25 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEllaeag 25 (159)
|||||||.|=||-..+++|.+..+.
T Consensus 190 IWFQNRRAKaKRlQeae~Ek~kmaa 214 (246)
T KOG0492|consen 190 IWFQNRRAKAKRLQEAELEKLKMAA 214 (246)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 8999999999999999999886643
No 7
>KOG0842|consensus
Probab=97.43 E-value=9e-05 Score=65.11 Aligned_cols=16 Identities=38% Similarity=0.547 Sum_probs=14.4
Q ss_pred CCccccchhhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTAV 16 (159)
Q Consensus 1 tWFQNRRTKWKRQ~av 16 (159)
|||||||=|=|||...
T Consensus 199 IWFQNrRYK~KR~~~d 214 (307)
T KOG0842|consen 199 IWFQNRRYKTKRQQKD 214 (307)
T ss_pred eeeecchhhhhhhhhh
Confidence 8999999999999753
No 8
>KOG0483|consensus
Probab=97.34 E-value=3.3e-05 Score=63.91 Aligned_cols=14 Identities=29% Similarity=1.004 Sum_probs=12.3
Q ss_pred CCccccchhhhhhh
Q psy5731 1 MWLTAVRTKWKRQT 14 (159)
Q Consensus 1 tWFQNRRTKWKRQ~ 14 (159)
|||||||.+||+..
T Consensus 96 vWFQNRRARwK~kq 109 (198)
T KOG0483|consen 96 VWFQNRRARWKTKQ 109 (198)
T ss_pred HHHhhccccccchh
Confidence 79999999999753
No 9
>KOG0850|consensus
Probab=97.15 E-value=0.00012 Score=62.94 Aligned_cols=15 Identities=27% Similarity=0.742 Sum_probs=14.2
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
|||||||-|.|++..
T Consensus 168 IWFQNrRSK~KKl~k 182 (245)
T KOG0850|consen 168 IWFQNRRSKFKKLKK 182 (245)
T ss_pred hhhhhhHHHHHHHHh
Confidence 899999999999986
No 10
>KOG0494|consensus
Probab=97.11 E-value=0.00014 Score=64.41 Aligned_cols=29 Identities=34% Similarity=0.795 Sum_probs=20.2
Q ss_pred CCccccchhhhhhhhh--hHHHHHHhCChHH
Q psy5731 1 MWLTAVRTKWKRQTAV--GLELLAEAGNYAA 29 (159)
Q Consensus 1 tWFQNRRTKWKRQ~av--gLEllaeagn~aA 29 (159)
+||||||.||+|-... +--+++|.|-|-|
T Consensus 187 VWfQNRRAKWRk~Ek~wg~sT~maeyglyGa 217 (332)
T KOG0494|consen 187 VWFQNRRAKWRKTEKRWGGSTIMAEYGLYGA 217 (332)
T ss_pred HHhhhhhHHhhhhhhhcCcchhhhhhcccch
Confidence 6999999999886543 3445667664433
No 11
>KOG0484|consensus
Probab=97.06 E-value=0.00016 Score=56.86 Aligned_cols=25 Identities=20% Similarity=0.554 Sum_probs=20.5
Q ss_pred CCccccchhhhhhhhhhHHHHHHhC
Q psy5731 1 MWLTAVRTKWKRQTAVGLELLAEAG 25 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEllaeag 25 (159)
+||||||.|.++|.-...-.+++..
T Consensus 63 VWFQNRRAKfRKQEr~a~~~~~~~~ 87 (125)
T KOG0484|consen 63 VWFQNRRAKFRKQERAAIAKMAAKS 87 (125)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhc
Confidence 5999999999999987777666533
No 12
>KOG0490|consensus
Probab=96.50 E-value=0.00077 Score=52.14 Aligned_cols=15 Identities=20% Similarity=0.561 Sum_probs=13.8
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||++|..
T Consensus 106 vwFqnrrak~r~~~~ 120 (235)
T KOG0490|consen 106 VWFQNRRAKDRKEER 120 (235)
T ss_pred hhhhhhcHhhhhhhc
Confidence 699999999999984
No 13
>KOG0848|consensus
Probab=96.30 E-value=0.0016 Score=57.77 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCccccchhhhhhhhhhH
Q psy5731 1 MWLTAVRTKWKRQTAVGL 18 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgL 18 (159)
|||||||.|-+|+..-++
T Consensus 245 IWFQNRRAKERK~nKKk~ 262 (317)
T KOG0848|consen 245 IWFQNRRAKERKDNKKKR 262 (317)
T ss_pred HhhhhhhHHHHHHHHHHH
Confidence 899999999999998775
No 14
>KOG2251|consensus
Probab=95.60 E-value=0.004 Score=53.38 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=14.5
Q ss_pred CCccccchhhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTAV 16 (159)
Q Consensus 1 tWFQNRRTKWKRQ~av 16 (159)
+||-|||.|||||..-
T Consensus 83 VWFKNRRAK~r~qq~q 98 (228)
T KOG2251|consen 83 VWFKNRRAKCRRQQQQ 98 (228)
T ss_pred hhhccccchhhHhhhh
Confidence 6999999999999864
No 15
>COG5576 Homeodomain-containing transcription factor [Transcription]
Probab=94.49 E-value=0.011 Score=47.30 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.3
Q ss_pred CCccccchhhhhhhhhhHHHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLELL 21 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEll 21 (159)
|||||||.|=|++...+.+..
T Consensus 97 IWFQNkR~~~k~~~~~~~~~~ 117 (156)
T COG5576 97 IWFQNKRAKEKKKRSGKVEQR 117 (156)
T ss_pred hhhchHHHHHHHhcccchhcc
Confidence 799999999999998877754
No 16
>KOG4577|consensus
Probab=94.27 E-value=0.012 Score=53.04 Aligned_cols=14 Identities=36% Similarity=0.622 Sum_probs=12.3
Q ss_pred CCccccchhhhhhh
Q psy5731 1 MWLTAVRTKWKRQT 14 (159)
Q Consensus 1 tWFQNRRTKWKRQ~ 14 (159)
+||||||.|=||-.
T Consensus 213 VWFQNRRAKEKRLK 226 (383)
T KOG4577|consen 213 VWFQNRRAKEKRLK 226 (383)
T ss_pred hhhhhhhHHHHhhh
Confidence 69999999998864
No 17
>KOG0849|consensus
Probab=91.37 E-value=0.047 Score=48.08 Aligned_cols=14 Identities=43% Similarity=1.142 Sum_probs=13.4
Q ss_pred CCccccchhhhhhh
Q psy5731 1 MWLTAVRTKWKRQT 14 (159)
Q Consensus 1 tWFQNRRTKWKRQ~ 14 (159)
+||||||.||+||.
T Consensus 222 vwf~nrra~~rr~~ 235 (354)
T KOG0849|consen 222 VWFQNRRAKWRRQH 235 (354)
T ss_pred HHHhhhhhhhhhcc
Confidence 69999999999998
No 18
>KOG0486|consensus
Probab=89.62 E-value=0.19 Score=45.61 Aligned_cols=15 Identities=27% Similarity=0.988 Sum_probs=12.2
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||-|||.||++-.-
T Consensus 158 vwfknrrakwrkrEr 172 (351)
T KOG0486|consen 158 VWFKNRRAKWRKRER 172 (351)
T ss_pred hhcccchhhhhhhhh
Confidence 699999999976443
No 19
>KOG3802|consensus
Probab=88.35 E-value=0.12 Score=47.56 Aligned_cols=15 Identities=40% Similarity=0.610 Sum_probs=13.8
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||+|||-|=||-+.
T Consensus 340 VWFCNRRQkeKR~~~ 354 (398)
T KOG3802|consen 340 VWFCNRRQKEKRITP 354 (398)
T ss_pred EEeeccccccccCCC
Confidence 699999999999886
No 20
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=34.52 E-value=41 Score=25.12 Aligned_cols=32 Identities=13% Similarity=0.310 Sum_probs=28.9
Q ss_pred hhhhhhhhhhHHHHHHhCChHHHHhhhcCCCC
Q psy5731 8 TKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39 (159)
Q Consensus 8 TKWKRQ~avgLEllaeagn~aA~Qrl~~~p~~ 39 (159)
--|++--+++++.+...+++.++|.++..-.|
T Consensus 10 iDWr~i~~iDvd~i~~~~Di~~Lq~~i~~vtf 41 (118)
T PF13815_consen 10 IDWRLISAIDVDRIVRELDIDTLQENIENVTF 41 (118)
T ss_pred CcHHHHhccCHHHHHhccCHHHHHHHHHhcce
Confidence 35999999999999999999999999987666
No 21
>KOG1924|consensus
Probab=30.90 E-value=1.1e+02 Score=31.91 Aligned_cols=12 Identities=33% Similarity=0.528 Sum_probs=5.0
Q ss_pred CCCCCCCCCCCC
Q psy5731 125 AMGGSRGSHTPD 136 (159)
Q Consensus 125 ~~~~s~gs~~~~ 136 (159)
++++-.|-+.||
T Consensus 587 pp~g~~Gg~ppP 598 (1102)
T KOG1924|consen 587 PPGGFLGGPPPP 598 (1102)
T ss_pred CCCCCCCCCCCC
Confidence 334444444443
No 22
>PF04617 Hox9_act: Hox9 activation region ; InterPro: IPR006711 This domain constitutes the N-terminal of the paralogous homeobox proteins HoxA9, HoxB9, HoxC9 and HoxD9. The N-terminal region is thought to act as a transcription activation region. Activation may be by interaction with proteins such as Btg proteins, which are thought to recruit a multi-protein Ccr4-like complex [].; GO: 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=29.04 E-value=63 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=23.4
Q ss_pred cccccchhccccCCCCCCCCCCCCCCCCCCCCCC-CCCC
Q psy5731 103 SLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPD-SQPE 140 (159)
Q Consensus 103 sls~ls~yy~~~~~~~~~spd~~~~~s~gs~~~~-~~p~ 140 (159)
..++|||||-+-+...+.---...+-+.|..... +|+.
T Consensus 3 tSGtlsnYYVDSlI~~e~ed~~a~Rf~~g~~~~~~R~~~ 41 (182)
T PF04617_consen 3 TSGTLSNYYVDSLISHESEDVYAARFSSGPHPQPSRPSG 41 (182)
T ss_pred cccccccceeeecccCCccccccccccCCCCCCCCCCCc
Confidence 4578999999966655542223445566666554 5555
No 23
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=25.99 E-value=40 Score=29.10 Aligned_cols=32 Identities=38% Similarity=0.619 Sum_probs=24.7
Q ss_pred Cccccch-hhhhhhhhhHHHHHHhCChHHHHhhh
Q psy5731 2 WLTAVRT-KWKRQTAVGLELLAEAGNYAAFQRLY 34 (159)
Q Consensus 2 WFQNRRT-KWKRQ~avgLEllaeagn~aA~Qrl~ 34 (159)
||++||. |=++++..|+-.+.+ |++....+.+
T Consensus 75 ~~~~r~~~k~~~~~~~glla~~~-g~~~~A~~~l 107 (409)
T TIGR00540 75 WFSGRKRRKAQKQTEEALLKLAE-GDYAKAEKLI 107 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence 8888665 888889999998877 8887555544
No 24
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=25.11 E-value=58 Score=30.31 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=21.9
Q ss_pred ccccccchhccccCCCCCCCCCCCCCCC
Q psy5731 102 TSLSSISSYYNNLNLTRSCSPDNAMGGS 129 (159)
Q Consensus 102 ~sls~ls~yy~~~~~~~~~spd~~~~~s 129 (159)
+|-..|.+||++|+..++-||-.++.++
T Consensus 397 ~segVLAnFFNSLLsKks~Sp~s~~~~~ 424 (472)
T PF05783_consen 397 PSEGVLANFFNSLLSKKSGSPGSPGTGP 424 (472)
T ss_pred cchHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 4456789999999999988887766543
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=22.64 E-value=57 Score=28.16 Aligned_cols=33 Identities=30% Similarity=0.590 Sum_probs=25.0
Q ss_pred Cccccch-hhhhhhhhhHHHHHHhCChHHHHhhhc
Q psy5731 2 WLTAVRT-KWKRQTAVGLELLAEAGNYAAFQRLYG 35 (159)
Q Consensus 2 WFQNRRT-KWKRQ~avgLEllaeagn~aA~Qrl~~ 35 (159)
||++||. |=++.+..|+-.+.| ||+....++..
T Consensus 75 ~~~~rr~~~~~~~~~~gl~a~~e-Gd~~~A~k~l~ 108 (398)
T PRK10747 75 WFVGRKRRRARKQTEQALLKLAE-GDYQQVEKLMT 108 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHHH
Confidence 8888766 777788889888876 99875555543
No 26
>KOG1924|consensus
Probab=22.47 E-value=2.2e+02 Score=29.76 Aligned_cols=9 Identities=22% Similarity=-0.020 Sum_probs=4.2
Q ss_pred ccccccccC
Q psy5731 73 QKPLAYRLY 81 (159)
Q Consensus 73 Qkplpyrly 81 (159)
--|.|+.++
T Consensus 526 ~iP~PP~~p 534 (1102)
T KOG1924|consen 526 GIPPPPPLP 534 (1102)
T ss_pred CCCCCCCCC
Confidence 344555544
Done!