Query psy5731
Match_columns 159
No_of_seqs 67 out of 69
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 16:35:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5731.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5731hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nzz_A Penetratin conjugated G 98.7 1.2E-09 4E-14 68.9 -0.4 16 1-16 5-20 (37)
2 3a01_A Homeodomain-containing 98.0 4.6E-07 1.6E-11 63.8 -1.7 20 1-20 63-82 (93)
3 2cue_A Paired box protein PAX6 97.8 1.8E-06 6.2E-11 58.7 -1.0 16 1-16 53-68 (80)
4 1uhs_A HOP, homeodomain only p 97.8 1.9E-06 6.4E-11 57.4 -1.5 15 1-15 48-62 (72)
5 2hi3_A Homeodomain-only protei 97.7 2.4E-06 8.2E-11 57.2 -1.5 15 1-15 49-63 (73)
6 2dmq_A LIM/homeobox protein LH 97.7 3.2E-06 1.1E-10 57.0 -1.4 15 1-15 53-67 (80)
7 2dms_A Homeobox protein OTX2; 97.7 2.9E-06 9.8E-11 57.5 -1.6 15 1-15 53-67 (80)
8 2ecb_A Zinc fingers and homeob 97.5 5.2E-06 1.8E-10 59.4 -2.1 15 1-15 57-71 (89)
9 1b72_B Protein (PBX1); homeodo 97.4 1.3E-05 4.5E-10 54.7 -1.0 19 1-19 50-68 (87)
10 2dmp_A Zinc fingers and homeob 97.4 1.1E-05 3.7E-10 56.4 -1.9 19 1-19 59-77 (89)
11 1le8_B Mating-type protein alp 97.3 1.3E-05 4.5E-10 55.0 -2.1 15 1-15 51-65 (83)
12 2ecc_A Homeobox and leucine zi 97.2 1.4E-05 4.9E-10 56.1 -2.6 19 1-19 49-67 (76)
13 2dmn_A Homeobox protein TGIF2L 97.0 4.6E-05 1.6E-09 52.5 -1.5 15 1-15 56-70 (83)
14 2lk2_A Homeobox protein TGIF1; 95.6 0.0011 3.6E-08 48.0 -1.4 14 1-14 54-67 (89)
15 1pd3_A Nonstructural protein N 32.0 22 0.00075 24.2 1.8 17 4-20 1-17 (58)
16 3hpw_C Protein CCDA; alpha+bet 20.0 60 0.002 19.7 2.0 19 5-23 3-21 (36)
No 1
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.72 E-value=1.2e-09 Score=68.86 Aligned_cols=16 Identities=31% Similarity=0.850 Sum_probs=14.6
Q ss_pred CCccccchhhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTAV 16 (159)
Q Consensus 1 tWFQNRRTKWKRQ~av 16 (159)
|||||||+||||+...
T Consensus 5 IWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 5 IWFQNRRMKWKKRVFN 20 (37)
T ss_dssp TTTTCSHHHHTSSHHH
T ss_pred eccHHHHHHHHHHhHH
Confidence 8999999999999864
No 2
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=97.97 E-value=4.6e-07 Score=63.77 Aligned_cols=20 Identities=50% Similarity=0.840 Sum_probs=15.5
Q ss_pred CCccccchhhhhhhhhhHHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLEL 20 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLEl 20 (159)
+||||||.||||+....-|.
T Consensus 63 vWFqNRR~k~kr~~~~~~~~ 82 (93)
T 3a01_A 63 TWFQNRRTKWRRQTAEEREA 82 (93)
T ss_dssp HHHHHHHHHHHHHHTCC---
T ss_pred cccHhhhhhhhhhhHHHHHH
Confidence 69999999999998766553
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.80 E-value=1.8e-06 Score=58.66 Aligned_cols=16 Identities=31% Similarity=1.043 Sum_probs=14.3
Q ss_pred CCccccchhhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTAV 16 (159)
Q Consensus 1 tWFQNRRTKWKRQ~av 16 (159)
+||||||.||||+...
T Consensus 53 vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 53 VWFSNRRAKWRREEKL 68 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhh
Confidence 6999999999999854
No 4
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.75 E-value=1.9e-06 Score=57.41 Aligned_cols=15 Identities=20% Similarity=0.767 Sum_probs=13.6
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||||+..
T Consensus 48 ~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 48 KWFKQRLAEWRRSEG 62 (72)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHhHHHHHHHhhhcc
Confidence 699999999999874
No 5
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.71 E-value=2.4e-06 Score=57.18 Aligned_cols=15 Identities=20% Similarity=0.767 Sum_probs=13.6
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||||+..
T Consensus 49 ~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 49 KWFKQRLAEWRRSEG 63 (73)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcc
Confidence 699999999999874
No 6
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.67 E-value=3.2e-06 Score=57.00 Aligned_cols=15 Identities=27% Similarity=0.784 Sum_probs=13.4
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||||+..
T Consensus 53 ~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 53 VWFQNARAKFRRNLL 67 (80)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHH
Confidence 699999999999863
No 7
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.67 E-value=2.9e-06 Score=57.52 Aligned_cols=15 Identities=27% Similarity=0.662 Sum_probs=13.6
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||||+..
T Consensus 53 ~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 53 VWFKNRRAKCRQQQQ 67 (80)
T ss_dssp HHHHHHHTHHHHTTC
T ss_pred hhhHHHhHHhhHHHH
Confidence 699999999999874
No 8
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.52 E-value=5.2e-06 Score=59.37 Aligned_cols=15 Identities=13% Similarity=0.324 Sum_probs=13.0
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
|||||||+|||++..
T Consensus 57 vWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 57 AWFTEKKKSKALKEE 71 (89)
T ss_dssp HHHHHHHHHHHSCCS
T ss_pred ecccccchHHHHHHH
Confidence 699999999998653
No 9
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=97.42 E-value=1.3e-05 Score=54.72 Aligned_cols=19 Identities=21% Similarity=0.412 Sum_probs=15.8
Q ss_pred CCccccchhhhhhhhhhHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLE 19 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLE 19 (159)
+||||||.||||+....-+
T Consensus 50 ~WFqNrR~r~kk~~~~~~~ 68 (87)
T 1b72_B 50 NWFGNKRIRYKKNIGKFQE 68 (87)
T ss_dssp HHHHHHHHHHHHCGGGGHH
T ss_pred HHHHHHHHHhhhccccccc
Confidence 5999999999999865444
No 10
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=1.1e-05 Score=56.44 Aligned_cols=19 Identities=16% Similarity=0.316 Sum_probs=15.6
Q ss_pred CCccccchhhhhhhhhhHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLE 19 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLE 19 (159)
|||||||.|||++.....+
T Consensus 59 vWFqNRR~k~r~~~~~~~~ 77 (89)
T 2dmp_A 59 SWFSERRKLRDSMEQAVLD 77 (89)
T ss_dssp HHHHHHHHHHHTSCSCCCC
T ss_pred HhhHhHHHHHHHHhHhhhc
Confidence 6999999999998865433
No 11
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=97.30 E-value=1.3e-05 Score=54.96 Aligned_cols=15 Identities=40% Similarity=0.486 Sum_probs=13.4
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.||||+..
T Consensus 51 ~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 51 NWVAARRAKEKTITI 65 (83)
T ss_dssp HHHHHHHHHHTTSCC
T ss_pred cccHHHHcccccccc
Confidence 599999999999864
No 12
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.23 E-value=1.4e-05 Score=56.14 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=16.0
Q ss_pred CCccccchhhhhhhhhhHH
Q psy5731 1 MWLTAVRTKWKRQTAVGLE 19 (159)
Q Consensus 1 tWFQNRRTKWKRQ~avgLE 19 (159)
+||||||.|||++.-.-+|
T Consensus 49 vWFqNrR~k~Kk~~l~w~~ 67 (76)
T 2ecc_A 49 QWFGDTRYALKHGQLKWFR 67 (76)
T ss_dssp HHHHHHHHHHHHTCCSSTT
T ss_pred HHhHhhHHHHHHHHHHHHH
Confidence 6999999999999765555
No 13
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=97.05 E-value=4.6e-05 Score=52.47 Aligned_cols=15 Identities=13% Similarity=0.328 Sum_probs=13.4
Q ss_pred CCccccchhhhhhhh
Q psy5731 1 MWLTAVRTKWKRQTA 15 (159)
Q Consensus 1 tWFQNRRTKWKRQ~a 15 (159)
+||||||.|||++..
T Consensus 56 ~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 56 NWFINARRRILPDML 70 (83)
T ss_dssp HHHHHHHHHTHHHHT
T ss_pred HHhhhhHhhhcHHHH
Confidence 699999999999864
No 14
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=95.64 E-value=0.0011 Score=48.00 Aligned_cols=14 Identities=14% Similarity=0.406 Sum_probs=12.7
Q ss_pred CCccccchhhhhhh
Q psy5731 1 MWLTAVRTKWKRQT 14 (159)
Q Consensus 1 tWFQNRRTKWKRQ~ 14 (159)
+||||||.|||++.
T Consensus 54 ~WF~NrR~R~kk~~ 67 (89)
T 2lk2_A 54 NWFINARRRLLPDM 67 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHH
Confidence 59999999999985
No 15
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=32.03 E-value=22 Score=24.24 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=11.0
Q ss_pred cccchhhhhhhhhhHHH
Q psy5731 4 TAVRTKWKRQTAVGLEL 20 (159)
Q Consensus 4 QNRRTKWKRQ~avgLEl 20 (159)
|||-.||+.|+.-.+|.
T Consensus 1 q~rn~kwReqL~qKFEe 17 (58)
T 1pd3_A 1 QNRNGKWREQLGQKFEE 17 (58)
T ss_dssp ----CHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHH
Confidence 79999999999877764
No 16
>3hpw_C Protein CCDA; alpha+beta, SH3 domain, intrinsically disordered, toxin/toxin repressor complex; 1.45A {Escherichia coli} PDB: 3g7z_C 3tcj_T
Probab=20.04 E-value=60 Score=19.68 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=15.0
Q ss_pred ccchhhhhhhhhhHHHHHH
Q psy5731 5 AVRTKWKRQTAVGLELLAE 23 (159)
Q Consensus 5 NRRTKWKRQ~avgLEllae 23 (159)
-++.+||...+..++.+.+
T Consensus 3 ~~~~~W~~EN~~ai~~~N~ 21 (36)
T 3hpw_C 3 LRAERWKAENQEGMAEVAR 21 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3678999999999987654
Done!