RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5731
         (159 letters)



>gnl|CDD|223451 COG0374, HyaB, Ni,Fe-hydrogenase I large subunit [Energy production
           and conversion].
          Length = 545

 Score = 30.1 bits (68), Expect = 0.53
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 13/132 (9%)

Query: 3   LTAVRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQA 62
              V+ + K     G +L   A  Y      +G P Y   P             L +++ 
Sbjct: 147 FKEVQNRLKDFVESG-QLGIFANGY------WGHPAYKLPPEVNLIVVAHYLEALEFQRE 199

Query: 63  AVAAAAVSTLQKPLAYRLYPG-VPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCS 121
            V   A+   + P    L  G V    N    +       + +  ++ + NN+ L     
Sbjct: 200 IVKIVALFGGKNPHPQNLAVGGVTCPINLDSPMERLNEVKSIIKKLADFINNVYL----- 254

Query: 122 PDNAMGGSRGSH 133
           PD     +    
Sbjct: 255 PDLEAIAAFYKE 266


>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
          Length = 1560

 Score = 29.3 bits (65), Expect = 0.99
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 6/126 (4%)

Query: 34  YGGPTYGCWPYQGGGTTQPSAADLYYRQAAV--AAAAVSTLQKPLAYRLYPGVPATANAS 91
           Y        P         SA    Y+  A    AA + T  +P A   +     +    
Sbjct: 464 YSNAPLSNAP-PSSAKDHHSAYHAAYQHRAANQPAANLPTANQPAANNFHGAAGNSVGNP 522

Query: 92  HSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSRGSHTPDSQPESVDVEESSNDS 151
            +  P G A    ++ ++   N    R    D+  GG+       S  ESV+   S N S
Sbjct: 523 FASRPFGSAPYGGNAATTADPNGIAKRE---DHPEGGTNRQKYEQSDEESVESSSSENSS 579

Query: 152 PSNNKI 157
            + N++
Sbjct: 580 ENENEV 585


>gnl|CDD|239159 cd02758, MopB_Tetrathionate-Ra, The MopB_Tetrathionate-Ra CD
           contains tetrathionate reductase, subunit A, (TtrA) and
           other related proteins. The Salmonella enterica
           tetrathionate reductase catalyses the reduction of
           trithionate but not sulfur or thiosulfate. Members of
           this CD belong to the molybdopterin_binding (MopB)
           superfamily of proteins.
          Length = 735

 Score = 26.9 bits (60), Expect = 5.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 6   VRTKWKRQTAVGLELLAEAGNYAAFQRLYGGPTY 39
           +R +W +   +  E LA++ N    +   G PTY
Sbjct: 694 LRNRWGKTLQIWNEKLAKSRNSVTGEYFSGCPTY 727


>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
          Length = 1004

 Score = 26.6 bits (58), Expect = 9.0
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 99  LAATSLSSISSYYNNLNLTRSCSPD----NAMGGSRGSHTPDSQPESVDVEESSNDSPSN 154
                 S I +   N++ +    P       + G +     + +   +     S +S S 
Sbjct: 46  AGNIDGSPIGNLDANIHASFGADPKESSGANLPGKKEKKKKEIRGHDIMSNSDSQNSSSI 105

Query: 155 NKID 158
            K D
Sbjct: 106 EKQD 109


>gnl|CDD|129873 TIGR00791, gntP, gluconate transporter.  This family includes known
           gluconate transporters of E. coli and Bacillus species
           as well as an idonate transporter from E. coli
           [Transport and binding proteins, Carbohydrates, organic
           alcohols, and acids].
          Length = 440

 Score = 26.2 bits (58), Expect = 9.1
 Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 80  LYPGVPATANAS--HSLSPPGLAATSLSSI 107
           L  G+P  A  S  H   PP    T++++ 
Sbjct: 137 LKLGIPMVAALSVAHGFLPPHPGPTAIANE 166


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.310    0.125    0.373 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,822,979
Number of extensions: 673137
Number of successful extensions: 447
Number of sequences better than 10.0: 1
Number of HSP's gapped: 445
Number of HSP's successfully gapped: 14
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.4 bits)