RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5731
         (159 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.5 bits (76), Expect = 0.024
 Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 33/149 (22%)

Query: 21  LAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVST--------- 71
           + +  +Y    +L G        Y  G T    +  L      V A A++          
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGH--SQGL------VTAVAIAETDSWESFFV 294

Query: 72  -LQKPLAYRLYPGVPATANASHSLSPPGLAATSLSSISSYYNNLNLTRSCSPDNAMGGSR 130
            ++K +    + GV       ++  PP +   SL       NN  +    SP   M    
Sbjct: 295 SVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE------NNEGVP---SP---MLSIS 342

Query: 131 GSHTPDSQPESVDVEESSNDSPSNNKIDV 159
                  Q +   V ++++  P+  ++++
Sbjct: 343 N--LTQEQVQDY-VNKTNSHLPAGKQVEI 368


>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
          DNA-binding, homeobox, NUC developmental protein; 2.70A
          {Drosophila melanogaster}
          Length = 93

 Score = 30.6 bits (69), Expect = 0.056
 Identities = 11/20 (55%), Positives = 13/20 (65%)

Query: 7  RTKWKRQTAVGLELLAEAGN 26
          RTKW+RQTA   E   +A N
Sbjct: 69 RTKWRRQTAEEREAERQAAN 88


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.7 bits (68), Expect = 0.14
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 14/37 (37%)

Query: 68  AVSTLQKPLAYRLYPGVPATANASHSLSPPGLA--AT 102
           A+  LQ  L  +LY     +A        P LA  AT
Sbjct: 21  ALKKLQASL--KLY--ADDSA--------PALAIKAT 45


>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
          protein, DNA-binding, N gene regulation; 1.54A {Homo
          sapiens}
          Length = 56

 Score = 26.5 bits (59), Expect = 0.97
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 7  RTKWKRQT 14
          RTKW+RQT
Sbjct: 49 RTKWRRQT 56


>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
           pseudomonas, protein binding; 2.50A {Pseudomonas
           fluorescens}
          Length = 452

 Score = 25.9 bits (57), Expect = 8.6
 Identities = 7/72 (9%), Positives = 14/72 (19%), Gaps = 6/72 (8%)

Query: 18  LELLAEAGNYAAFQRLYGGPTYGCWPYQGGGTTQPSAADLYYRQAAVAAAAVSTLQKPLA 77
           +   A       +  L     Y     +     Q +                +     +A
Sbjct: 167 ICKAALNTTDICYVEL--ATVY----QKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220

Query: 78  YRLYPGVPATAN 89
             L      T +
Sbjct: 221 RVLGDATLGTPD 232


>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A
           {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
          Length = 384

 Score = 25.7 bits (57), Expect = 8.8
 Identities = 12/51 (23%), Positives = 15/51 (29%), Gaps = 11/51 (21%)

Query: 96  PPGLAATSLS-----------SISSYYNNLNLTRSCSPDNAMGGSRGSHTP 135
             GL    LS           SI+ YY +L            G +    TP
Sbjct: 194 AAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAAYFATP 244


>3d5k_A OPRM, outer membrane protein OPRM; channel, beta-alpha-barrel,
           antibiotic RES lipoprotein, palmitate, transmemb
           transport; 2.40A {Pseudomonas aeruginosa} PDB: 1wp1_A
          Length = 474

 Score = 25.8 bits (57), Expect = 8.9
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 80  LYPGVPATANASHSLSPPGLAATSLSSISSYYN 112
           L+P +    + +    P  L+ T   +ISS Y 
Sbjct: 84  LFPRIGVDGSGTRQRLPGDLSTTGSPAISSQYG 116


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.310    0.125    0.373 

Gapped
Lambda     K      H
   0.267   0.0770    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,340,907
Number of extensions: 127427
Number of successful extensions: 196
Number of sequences better than 10.0: 1
Number of HSP's gapped: 194
Number of HSP's successfully gapped: 12
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.1 bits)