BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5732
(454 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q14766|LTBP1_HUMAN Latent-transforming growth factor beta-binding protein 1 OS=Homo
sapiens GN=LTBP1 PE=1 SV=4
Length = 1721
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 35/202 (17%)
Query: 117 NKTCYGIDQENAKKYRCIADECKNLTGTFNCTQGTCINIT-------DAFECDFRETDSP 169
+K C ID E + C+ +CKN G+F CT G ++ D EC R +
Sbjct: 1074 HKHCRDID-ECQQGNLCVNGQCKNTEGSFRCTCGQGYQLSAAKDQCEDIDECQHRHLCAH 1132
Query: 170 LKCSGRRGKINCIAMHGLQN-------------------CVRGTCERIRTPYNCDRRCVD 210
+C G C+ G + C RG C Y+C C D
Sbjct: 1133 GQCRNTEGSFQCVCDQGYRASGLGDHCEDINECLEDKSVCQRGDCINTAGSYDC--TCPD 1190
Query: 211 IPTRNKNVIVLSGDRVYLSQCQKAVLLNNTEQEIWTEDQNNILMASCFNVNNTSRGIEAL 270
+ N +++C+ L + + TE + + F+++ R E +
Sbjct: 1191 GFQLDDNKTCQD-----INECEHPGLCGPQGECLNTEGSFHCVCQQGFSISADGRTCEDI 1245
Query: 271 D-CINGSVLDRSALTDLTNFTF 291
D C+N +V D D T +F
Sbjct: 1246 DECVNNTVCDSHGFCDNTAGSF 1267
>sp|P48613|TIPE_DROME Protein tipE OS=Drosophila melanogaster GN=tipE PE=2 SV=1
Length = 452
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 17 QDQKICGTICICQMTAVLSTVALVYLTVAIYMPYMRAVQSGIDTSPVMCTTTRAVII--- 73
+++ + T + S A ++L + P + + P +C T I
Sbjct: 11 KEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQFEEVPALCETYDTEIYYGA 70
Query: 74 ETCTWGSCGEWCLSKTSGACAQIYVSLRHNGSNLLFVNCTNSANKTCYGIDQENAKK 130
+ C+W SC E C +K C QI V+ R N N T+ N T Y I+ + A++
Sbjct: 71 KNCSWSSCREGC-TKDIYTCTQIRVNYRLN-----LYNFTDEFNFTEYHINLKEAER 121
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 42/103 (40%), Gaps = 6/103 (5%)
Query: 322 SRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCFYSEKIPGTVIARFNLSETY 381
+RL N++GC C +L+ + K G +FPC+YS+ P VI+ + +
Sbjct: 221 ARLFPNVKGCGYPPMLNCTIWLKRYTKIGM------KFPCYYSKVDPSLVISDLDYWQNT 274
Query: 382 REFMIGFFVPCILLIVSCLTLILCQRTVEVGDDAKMRFKKKGE 424
+ +P I+S + L + D+ K E
Sbjct: 275 LNLVYSMAIPIPSFIISVIYLTYAYFKIYNEDEETAPLDKNAE 317
>sp|Q00918|LTBP1_RAT Latent-transforming growth factor beta-binding protein 1 OS=Rattus
norvegicus GN=Ltbp1 PE=1 SV=1
Length = 1712
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 117 NKTCYGIDQENAKKYRCIADECKNLTGTFNCTQGTCINIT-------DAFECDFRETDSP 169
++ C ID E + C+ +CKN G+F CT G ++ D EC+ R S
Sbjct: 1066 HRHCQDID-ECQQGNLCMNGQCKNTDGSFRCTCGQGYQLSAAKDQCEDIDECEHRHLCSH 1124
Query: 170 LKCSGRRGKINCIAMHGLQNCVRG-TCER----------------IRTPYNCDRRCVDIP 212
+C G C+ G + V G CE I T + D C D
Sbjct: 1125 GQCRNTEGSFQCLCNQGYRASVLGDHCEDINECLEDSSVCQGGDCINTAGSYDCTCPDGL 1184
Query: 213 TRNKNVIVLSGDRVYLSQCQKAVLLNNTEQEIWTEDQNNILMASCFNVNNTSRGIEALD- 271
N N +++C + L + + T+ + + F+++ R E +D
Sbjct: 1185 QLNDNKGCQD-----INECAQPGLCAPHGECLNTQGSFHCVCEQGFSISADGRTCEDIDE 1239
Query: 272 CINGSVLDRSALTDLTNFTF 291
C+N +V D D T +F
Sbjct: 1240 CVNNTVCDSHGFCDNTAGSF 1259
>sp|Q9Y691|KCMB2_HUMAN Calcium-activated potassium channel subunit beta-2 OS=Homo sapiens
GN=KCNMB2 PE=1 SV=1
Length = 235
Score = 35.4 bits (80), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 32 AVLSTVALVYLTVAIY----MPYMRAVQSGIDTSPVMCTTTRAVIIET--CTWGSCGEWC 85
A+L +A++ ++ +Y + +R+ + T CT A I ET C++ SCG C
Sbjct: 47 AILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSF-SCGPDC 105
Query: 86 LSKTSGACAQIYVSLRHNGSNLLFVN 111
+ C Q+YV+L +G LL +
Sbjct: 106 WKLSQYPCLQVYVNLTSSGEKLLLYH 131
>sp|Q8CG19|LTBP1_MOUSE Latent-transforming growth factor beta-binding protein 1 OS=Mus
musculus GN=Ltbp1 PE=2 SV=2
Length = 1712
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 76/200 (38%), Gaps = 31/200 (15%)
Query: 117 NKTCYGIDQENAKKYRCIADECKNLTGTFNCTQGTCINIT-------DAFECDFRETDSP 169
++ C ID E + C+ +C+N G+F CT G ++ D EC+ S
Sbjct: 1066 HRHCQDID-ECQQGNLCMNGQCRNTDGSFRCTCGQGYQLSAAKDQCEDIDECEHHHLCSH 1124
Query: 170 LKCSGRRGKINCIAMHGLQNCVRG-TCER----------------IRTPYNCDRRCVDIP 212
+C G C+ G + V G CE I T + D C D
Sbjct: 1125 GQCRNTEGSFQCVCNQGYRASVLGDHCEDINECLEDSSVCQGGDCINTAGSYDCTCPDGF 1184
Query: 213 TRNKNVIVLSGDRVYLSQCQKAVLLNNTEQEIWTEDQNNILMASCFNVNNTSRGIEALD- 271
N N +++C + L + + + T+ + + F+++ R E +D
Sbjct: 1185 QLNDNKGCQD-----INECAQPGLCGSHGECLNTQGSFHCVCEQGFSISADGRTCEDIDE 1239
Query: 272 CINGSVLDRSALTDLTNFTF 291
C+N +V D D T +F
Sbjct: 1240 CVNNTVCDSHGFCDNTAGSF 1259
>sp|B8D845|RS19_BUCAT 30S ribosomal protein S19 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rpsS PE=3 SV=1
Length = 92
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 316 LLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCFYSEKIPGTVIARF 375
LL E + IN + + T F G + HN R+ P F +E++ G + F
Sbjct: 15 LLKKVEKSVKINDKKPIKTWSRRSTIFPNMVGLTISIHNGRSHIPVFVTEEMVGHKLGEF 74
Query: 376 NLSETYR 382
+L+ TYR
Sbjct: 75 SLTRTYR 81
>sp|P57587|RS19_BUCAI 30S ribosomal protein S19 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsS PE=3 SV=1
Length = 92
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 316 LLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCFYSEKIPGTVIARF 375
LL E + IN + + T F G + HN R+ P F +E++ G + F
Sbjct: 15 LLKKVEKSVKINDKKPIKTWSRRSTIFPNMVGLTISIHNGRSHIPVFVTEEMVGHKLGEF 74
Query: 376 NLSETYR 382
+L+ TYR
Sbjct: 75 SLTRTYR 81
>sp|B8D9U3|RS19_BUCA5 30S ribosomal protein S19 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rpsS PE=3 SV=1
Length = 92
Score = 33.5 bits (75), Expect = 3.1, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%)
Query: 316 LLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCFYSEKIPGTVIARF 375
LL E + IN + + T F G + HN R+ P F +E++ G + F
Sbjct: 15 LLKKVEKSVKINDKKPIKTWSRRSTIFPNMVGLTISIHNGRSHIPVFVTEEMVGHKLGEF 74
Query: 376 NLSETYR 382
+L+ TYR
Sbjct: 75 SLTRTYR 81
>sp|Q8BQ48|K1731_MOUSE Centrosomal protein KIAA1731 homolog OS=Mus musculus GN=Kiaa1731 PE=2
SV=3
Length = 2412
Score = 33.1 bits (74), Expect = 4.1, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 303 LDKDRQIAPPEQDLLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCF 362
L K Q+ PP+QD L A + +L E +++ ++ +E LRE+ +
Sbjct: 1290 LSKISQLIPPQQDSLKALQEQLATQREAIIHSRQEAHEETLREWKEKIFPEQVGP----- 1344
Query: 363 YSEKIPGTVIARFNLSETYR 382
+S IP +A F +S+T R
Sbjct: 1345 FSPLIPQHSLASFPVSDTER 1364
>sp|Q9CZM9|KCMB2_MOUSE Calcium-activated potassium channel subunit beta-2 OS=Mus musculus
GN=Kcnmb2 PE=2 SV=1
Length = 235
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 32 AVLSTVALVYLTVAIY----MPYMRAVQSGIDTSPVMCTTTRAVIIET--CTWGSCGEWC 85
A+L +A++ ++ +Y + +R+ + T C I ET C++ SCG C
Sbjct: 47 AILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEEAQCALLNVSITETFNCSF-SCGPDC 105
Query: 86 LSKTSGACAQIYVSLRHNGSNLLFVNC--TNSANKTC 120
+ C Q+YV+L +G LL + T N+ C
Sbjct: 106 WKLSQYPCLQVYVNLTSSGERLLLYHTEETMKINQKC 142
>sp|O35806|LTBP2_RAT Latent-transforming growth factor beta-binding protein 2 OS=Rattus
norvegicus GN=Ltbp2 PE=2 SV=1
Length = 1764
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 48/114 (42%), Gaps = 16/114 (14%)
Query: 138 CKNLTGTFNC---TQGTCINITDAFEC-DFRETDSPLKCSGRR-----GKINCIAMHGLQ 188
C N G+++C T + D EC D E + P CSG R G +C G
Sbjct: 892 CVNSVGSYSCLCYPGYTLATLGDTQECQDVDECEQPGVCSGGRCSNTEGSYHCECDQGYV 951
Query: 189 NCVRGTCERI---RTPYNC-DRRCVDIPTRNKNVIVLSGDRVYLSQCQKAVLLN 238
RG C+ I R P C D RCV+ P + L+ + Y+ Q V +N
Sbjct: 952 MVRRGHCQDINECRHPGTCPDGRCVNSP---GSYTCLACEEGYIGQSGNCVDMN 1002
>sp|P36300|SPIKE_CVCAI Spike glycoprotein OS=Canine coronavirus (strain Insavc-1) GN=S
PE=1 SV=1
Length = 1451
Score = 32.0 bits (71), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 56/137 (40%), Gaps = 19/137 (13%)
Query: 228 LSQCQKAVLLNNTEQEI-----WTEDQNNILMASCFNVNNTSRGIEALDCINGSVLDRS- 281
SQC V LNNT I +T D + + A+ F++N T I + C N +V + S
Sbjct: 329 FSQC-NGVSLNNTVDVIRFNLNFTTDVQSGMGATVFSLNTTGGVILEISCYNDTVSESSF 387
Query: 282 --------ALTDLTNFTFLNYLNIYNATILDKDRQIAPPEQDLLLANESRLLINLEGCVN 333
+TD + ++ +YN T L + P +++ ++ IN +
Sbjct: 388 YSYGEIPFGVTDGPRYCYV----LYNGTALKYLGTLPPSVKEIAISKWGHFYINGYNFFS 443
Query: 334 TLRDECKEFLREFGKDG 350
T +C F G G
Sbjct: 444 TFPIDCIAFNLTTGASG 460
>sp|E7CLP0|SCX9_RHOJU Putative alpha-neurotoxin RjAa9 (Fragment) OS=Rhopalurus junceus
PE=2 SV=1
Length = 63
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 121 YGIDQENAKKYRCIADE-CKNLTGTFNCTQGTCINITDAFECDFRETDSPLKCSGR 175
Y +D N K Y C++DE CK+L T G C + + C DSP+K G+
Sbjct: 4 YPVDWGNCK-YECMSDEYCKDLCADRKATSGYCYKLNWSCYCKGLPDDSPIKTPGK 58
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,172,444
Number of Sequences: 539616
Number of extensions: 6762359
Number of successful extensions: 13771
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 13293
Number of HSP's gapped (non-prelim): 459
length of query: 454
length of database: 191,569,459
effective HSP length: 121
effective length of query: 333
effective length of database: 126,275,923
effective search space: 42049882359
effective search space used: 42049882359
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)