Query psy5732
Match_columns 454
No_of_seqs 55 out of 57
Neff 2.8
Searched_HMMs 29240
Date Fri Aug 16 16:36:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5732.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5732hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1emn_A Fibrillin; extracellula 51.1 7.9 0.00027 29.7 2.2 16 147-162 14-29 (82)
2 1lmj_A Fibrillin 1; EGF, calci 32.9 18 0.0006 27.8 1.6 16 147-162 13-28 (86)
3 2m0p_A Low-density lipoprotein 32.3 32 0.0011 25.8 2.9 20 186-207 10-29 (52)
4 1dec_A Decorsin; blood coagula 29.2 13 0.00046 26.7 0.3 18 119-139 6-23 (39)
5 2fyj_A Low-density lipoprotein 25.9 78 0.0027 24.9 4.3 56 143-207 8-68 (82)
6 1z6c_A Vitamin K-dependent pro 22.8 47 0.0016 25.5 2.4 16 133-148 13-28 (87)
7 3ssb_C IMPI alpha, inducible m 20.4 59 0.002 23.7 2.3 23 184-216 11-33 (40)
8 4gvb_B VP12.5, KP6 killer toxi 17.2 43 0.0015 27.2 1.1 36 59-94 3-47 (81)
9 3arc_F Cytochrome B559 subunit 16.8 18 0.00062 27.0 -1.1 29 378-406 15-43 (44)
10 2fcw_B LDL receptor, low-densi 15.2 1.3E+02 0.0045 23.6 3.4 57 142-207 5-64 (80)
No 1
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A
Probab=51.10 E-value=7.9 Score=29.73 Aligned_cols=16 Identities=38% Similarity=1.227 Sum_probs=9.2
Q ss_pred ecCceeeccccccccc
Q psy5732 147 CTQGTCINITDAFECD 162 (454)
Q Consensus 147 Ct~GhCiNitda~~C~ 162 (454)
|..|.|+|....|.|.
T Consensus 14 C~~g~C~n~~g~y~C~ 29 (82)
T 1emn_A 14 CKHGQCINTDGSYRCE 29 (82)
T ss_dssp CSSSEECCCSSCCCEE
T ss_pred cCCCEEEecCCCEEEE
Confidence 4445666666666554
No 2
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Probab=32.93 E-value=18 Score=27.83 Aligned_cols=16 Identities=44% Similarity=1.223 Sum_probs=7.6
Q ss_pred ecCceeeccccccccc
Q psy5732 147 CTQGTCINITDAFECD 162 (454)
Q Consensus 147 Ct~GhCiNitda~~C~ 162 (454)
|..|.|+|....|+|.
T Consensus 13 C~~g~C~n~~g~y~C~ 28 (86)
T 1lmj_A 13 CGRGQCVNTPGDFECK 28 (86)
T ss_dssp TTTSCEEEETTEEEEC
T ss_pred CCCCEEECCCCCEEee
Confidence 4344455555555443
No 3
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=32.34 E-value=32 Score=25.81 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=16.3
Q ss_pred ceeeecCceeeeecCccccccc
Q psy5732 186 GLQNCVRGTCERIRTPYNCDRR 207 (454)
Q Consensus 186 G~f~C~~~~C~kI~~py~CDR~ 207 (454)
+.|.|.+|+| |.+.+-||..
T Consensus 10 ~~F~C~nG~C--Ip~~~~CDG~ 29 (52)
T 2m0p_A 10 TQYTCDNHQC--ISKNWVCDTD 29 (52)
T ss_dssp SEEECTTCCE--EETTSTTSSS
T ss_pred CceECCCCCE--EecCccCCCC
Confidence 7899999998 5678889854
No 4
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=29.15 E-value=13 Score=26.68 Aligned_cols=18 Identities=56% Similarity=0.955 Sum_probs=14.5
Q ss_pred ccccCCcccccccccchhhhc
Q psy5732 119 TCYGIDQENAKKYRCIADECK 139 (454)
Q Consensus 119 tC~~id~~~~kk~~C~~deC~ 139 (454)
.|.|.||| |-.||.|||-
T Consensus 6 qcqgddqe---kclcnkdecp 23 (39)
T 1dec_A 6 QCQGDDQE---KCLCNKDECP 23 (39)
T ss_dssp BCCSSCSS---CEESSSSEEC
T ss_pred cccCcchh---hccccCCCCC
Confidence 57888886 6789999974
No 5
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=25.88 E-value=78 Score=24.87 Aligned_cols=56 Identities=29% Similarity=0.780 Sum_probs=33.5
Q ss_pred ceeeecCceeecccccccccccc-----CCCCcccCCCCCceeeeeccceeeecCceeeeecCccccccc
Q psy5732 143 GTFNCTQGTCINITDAFECDFRE-----TDSPLKCSGRRGKINCIAMHGLQNCVRGTCERIRTPYNCDRR 207 (454)
Q Consensus 143 G~FNCt~GhCiNitda~~C~f~~-----~~~p~kcs~~rgki~c~~lnG~f~C~~~~C~kI~~py~CDR~ 207 (454)
+.|-|..|+||..+ +.|.-.. +|-+..|.. .+|. -.+.|.|.+|+|- ...+-||..
T Consensus 8 ~~f~C~~g~Ci~~~--~~CDg~~DC~DgsDE~~~C~~----~~C~-~~~~f~C~~g~CI--~~~~~CDG~ 68 (82)
T 2fyj_A 8 NQFSCASGRCIPIS--WTCDLDDDCGDRSDESASCAY----PTCF-PLTQFTCNNGRCI--NINWRCDND 68 (82)
T ss_dssp TEEETTSSCEEETT--SSSSCSSSSCSTTTTTSSCCC----SSSC-SSSEEECTTSCEE--ETTCBSSSS
T ss_pred CceEeCCCCEEecc--ccCCCcccCCCcccccccccc----ccCC-CCCceECCCCCeE--cHHHccCCC
Confidence 67899999998643 5565332 222233321 1121 1378999999985 456777743
No 6
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=22.78 E-value=47 Score=25.54 Aligned_cols=16 Identities=44% Similarity=1.097 Sum_probs=9.8
Q ss_pred cchhhhccccceeeec
Q psy5732 133 CIADECKNLTGTFNCT 148 (454)
Q Consensus 133 C~~deC~nLtG~FNCt 148 (454)
|++..|.|..|.|.|+
T Consensus 13 C~~~~C~n~~g~y~C~ 28 (87)
T 1z6c_A 13 CGTAVCKNIPGDFECE 28 (87)
T ss_dssp BTTSSCCCBTTBCCCS
T ss_pred CCCCEeECCCCCEEEE
Confidence 5445666666666664
No 7
>3ssb_C IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=20.36 E-value=59 Score=23.72 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=18.3
Q ss_pred ccceeeecCceeeeecCccccccccCCCCCccc
Q psy5732 184 MHGLQNCVRGTCERIRTPYNCDRRCVDIPTRNK 216 (454)
Q Consensus 184 lnG~f~C~~~~C~kI~~py~CDR~C~dI~t~~~ 216 (454)
=+-||+|-. -||..|-+|-|+|+
T Consensus 11 ~~e~~~cg~----------ac~n~c~~~~~qn~ 33 (40)
T 3ssb_C 11 GHEYYECGG----------ACDNVCADLHIQNK 33 (40)
T ss_dssp SSEEEEEEC----------SCCCBGGGTTTCCS
T ss_pred CCeeEeccc----------hHhhhhhhhhcccc
Confidence 356888865 48999999999886
No 8
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=17.18 E-value=43 Score=27.16 Aligned_cols=36 Identities=22% Similarity=0.452 Sum_probs=22.2
Q ss_pred ccCCceeEeeccc---------ccccCccccccCCcccCCCcccc
Q psy5732 59 DTSPVMCTTTRAV---------IIETCTWGSCGEWCLSKTSGACA 94 (454)
Q Consensus 59 ~e~PvmC~T~~~~---------~~~nC~W~SC~EwClsk~sg~C~ 94 (454)
.++||||+-+++. ..-.|+-.|=-.+=.+..-|+|-
T Consensus 3 rprpvmcqcvdttnggvrldavtraacsidsfidgyytekdgfcr 47 (81)
T 4gvb_B 3 RPRPVMCQCVDTTNGGVRLDAVTRAACSIDSFIDGYYTEKDGFCR 47 (81)
T ss_dssp -CCCEEEEEEESSGGGCBCHHHHHHHHCCC----CEECTTTCCEE
T ss_pred CCCceEEEEEecCCCcEEeehhhhhhcchhhhhccceeccCccEe
Confidence 4789999998874 23468877776666665557764
No 9
>3arc_F Cytochrome B559 subunit beta; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_F* 3a0b_F* 3a0h_F* 1w5c_F* 3kzi_F* 3bz1_F* 1s5l_F* 2axt_F* 3bz2_F* 3prq_F* 3prr_F*
Probab=16.78 E-value=18 Score=26.99 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=21.0
Q ss_pred hhhHHhhhheeecchhhHHHHHhheeeEE
Q psy5732 378 SETYREFMIGFFVPCILLIVSCLTLILCQ 406 (454)
Q Consensus 378 ~~t~~~li~a~~VP~vlFviS~i~L~~~~ 406 (454)
-...+--+++++||.|.|.=|....=++|
T Consensus 15 fTvRWlAvH~lavPtVfflGai~AmQfiq 43 (44)
T 3arc_F 15 FTVRWVAVHTLAVPTIFFLGAIAAMQFIQ 43 (44)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eeeehhhhhcccccceeeccHHHHHHHhh
Confidence 34456678999999999988776544433
No 10
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=15.16 E-value=1.3e+02 Score=23.62 Aligned_cols=57 Identities=26% Similarity=0.642 Sum_probs=34.1
Q ss_pred cceeeecCceeeccccccccccccCCCCcccCCCCCceeeee---ccceeeecCceeeeecCccccccc
Q psy5732 142 TGTFNCTQGTCINITDAFECDFRETDSPLKCSGRRGKINCIA---MHGLQNCVRGTCERIRTPYNCDRR 207 (454)
Q Consensus 142 tG~FNCt~GhCiNitda~~C~f~~~~~p~kcs~~rgki~c~~---lnG~f~C~~~~C~kI~~py~CDR~ 207 (454)
.+.|-|..|+||. ..+.|.-.. -|.+..--..|.. -.+.|.|.+|+|-. ..+-||..
T Consensus 5 ~~~F~C~~g~CI~--~~~~CDg~~-----DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~--~~~~CDg~ 64 (80)
T 2fcw_B 5 QAEFRCHDGKCIS--RQFVCDSDR-----DCLDGSDEASCPVLTCGPASFQCNSSTCIP--QLWACDND 64 (80)
T ss_dssp TTEEECTTSCEEE--GGGTTSSSC-----CSTTCTTTTTHHHHHCCTTEEECTTSCEEE--GGGTTSSS
T ss_pred CCccCCCCCCEEe--eecccCCcc-----cCCCcccccccccccCCceeeECCCCCEEe--cccccCCC
Confidence 4679999999975 446666433 2333222222211 25789999998854 45677754
Done!