Query psy5732
Match_columns 454
No_of_seqs 55 out of 57
Neff 2.8
Searched_HMMs 13730
Date Fri Aug 16 16:36:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5732.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5732hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uzka2 g.3.11.1 (A:1605-1647) 31.7 6.5 0.00048 26.4 0.8 25 136-162 4-28 (43)
2 d1deca_ g.3.15.2 (A:) Decorsin 29.2 6.3 0.00046 26.7 0.3 18 119-139 6-23 (39)
3 d1lmja2 g.3.11.1 (A:47-88) Fib 27.8 7.1 0.00052 26.1 0.4 25 136-162 3-27 (42)
4 d1lmja1 g.3.11.1 (A:3-46) Fibr 21.3 12 0.00088 25.5 0.6 25 136-162 4-28 (44)
5 d1emoa1 g.3.11.1 (A:2124-2166) 19.1 15 0.0011 24.6 0.7 28 133-163 2-30 (43)
6 d1uzka1 g.3.11.1 (A:1486-1528) 18.5 22 0.0016 23.5 1.4 24 136-162 4-27 (43)
7 d1d2la_ g.12.1.1 (A:) Ligand-b 16.7 30 0.0022 23.4 1.9 28 167-207 1-28 (45)
8 d2axtf1 f.23.38.1 (F:11-45) Cy 15.8 9.1 0.00066 25.7 -1.1 27 380-406 8-34 (35)
9 d2d8va1 g.43.1.1 (A:8-61) Zinc 14.0 20 0.0014 26.0 0.2 14 412-425 8-21 (54)
10 d1mkea1 b.55.1.4 (A:31-144) Ac 12.9 29 0.0021 27.0 1.0 59 206-284 8-67 (114)
No 1
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.69 E-value=6.5 Score=26.43 Aligned_cols=25 Identities=48% Similarity=1.128 Sum_probs=18.5
Q ss_pred hhhccccceeeecCceeeccccccccc
Q psy5732 136 DECKNLTGTFNCTQGTCINITDAFECD 162 (454)
Q Consensus 136 deC~nLtG~FNCt~GhCiNitda~~C~ 162 (454)
|||....+ .|..+.|+|+-..|.|.
T Consensus 4 nEC~~~~~--~c~~~~C~Nt~Gsy~C~ 28 (43)
T d1uzka2 4 DECQELPG--LCQGGKCINTFGSFQCR 28 (43)
T ss_dssp CHHHHCGG--GGBTSEEEECSSCEEEE
T ss_pred ccccCCCC--CcCCCEEECCCCCeEeE
Confidence 67775554 57778888888888875
No 2
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=29.15 E-value=6.3 Score=26.68 Aligned_cols=18 Identities=56% Similarity=0.955 Sum_probs=14.5
Q ss_pred ccccCCcccccccccchhhhc
Q psy5732 119 TCYGIDQENAKKYRCIADECK 139 (454)
Q Consensus 119 tC~~id~~~~kk~~C~~deC~ 139 (454)
.|.|.||| |-.||.|||-
T Consensus 6 qcqgddqe---kclcnkdecp 23 (39)
T d1deca_ 6 QCQGDDQE---KCLCNKDECP 23 (39)
T ss_dssp BCCSSCSS---CEESSSSEEC
T ss_pred cccCcchh---hccccCCCCC
Confidence 57888886 6789999974
No 3
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.78 E-value=7.1 Score=26.13 Aligned_cols=25 Identities=32% Similarity=0.891 Sum_probs=18.9
Q ss_pred hhhccccceeeecCceeeccccccccc
Q psy5732 136 DECKNLTGTFNCTQGTCINITDAFECD 162 (454)
Q Consensus 136 deC~nLtG~FNCt~GhCiNitda~~C~ 162 (454)
|||.... -.|..|.|+|.-..|+|.
T Consensus 3 dEC~~~~--~~C~~~~C~Nt~Gsy~C~ 27 (42)
T d1lmja2 3 DECQRDP--LLCRGGVCHNTEGSYRCE 27 (42)
T ss_dssp CHHHHCS--STTTTSEEEEETTEEEEE
T ss_pred cccCCCC--CCCCCCEeECCCCCeEEe
Confidence 6776544 357778899999999886
No 4
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.35 E-value=12 Score=25.47 Aligned_cols=25 Identities=40% Similarity=0.982 Sum_probs=17.6
Q ss_pred hhhccccceeeecCceeeccccccccc
Q psy5732 136 DECKNLTGTFNCTQGTCINITDAFECD 162 (454)
Q Consensus 136 deC~nLtG~FNCt~GhCiNitda~~C~ 162 (454)
|||. .+.-.|..+.|+|.-..|.|.
T Consensus 4 dEC~--~~~~~C~~~~C~Nt~Gsy~C~ 28 (44)
T d1lmja1 4 DECR--ISPDLCGRGQCVNTPGDFECK 28 (44)
T ss_dssp CTTT--TCSSTTTTSCEEEETTEEEEC
T ss_pred cccC--CCCCCCCCCEeEcCCCCeEEe
Confidence 5774 345567777788888888776
No 5
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.09 E-value=15 Score=24.59 Aligned_cols=28 Identities=32% Similarity=0.797 Sum_probs=19.1
Q ss_pred cch-hhhccccceeeecCceeecccccccccc
Q psy5732 133 CIA-DECKNLTGTFNCTQGTCINITDAFECDF 163 (454)
Q Consensus 133 C~~-deC~nLtG~FNCt~GhCiNitda~~C~f 163 (454)
|+. |||..-. -.| .++|+|.-..|+|.=
T Consensus 2 CvDidEC~~~~--~~~-~~~C~Nt~Gsy~C~C 30 (43)
T d1emoa1 2 AVDMDECKEPD--VCK-HGQCINTDGSYRCEC 30 (43)
T ss_dssp CCCCCSSSSTT--SCS-SSCCCCCSSCCCCCC
T ss_pred CcceeccCCcC--CCC-CCEeECCCCCeEeEC
Confidence 666 8886433 223 578888888888873
No 6
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.50 E-value=22 Score=23.51 Aligned_cols=24 Identities=38% Similarity=1.027 Sum_probs=16.8
Q ss_pred hhhccccceeeecCceeeccccccccc
Q psy5732 136 DECKNLTGTFNCTQGTCINITDAFECD 162 (454)
Q Consensus 136 deC~nLtG~FNCt~GhCiNitda~~C~ 162 (454)
|||..-. .|-.++|+|.-..|+|.
T Consensus 4 dEC~~~~---~~c~~~C~Nt~G~y~C~ 27 (43)
T d1uzka1 4 NECLDPT---TCISGNCVNTPGSYICD 27 (43)
T ss_dssp CGGGSTT---SSBTSEEEEETTEEEEE
T ss_pred cccCCCC---cCcCCEeECCCCCEEEe
Confidence 6776432 34568888888888886
No 7
>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.75 E-value=30 Score=23.38 Aligned_cols=28 Identities=32% Similarity=0.809 Sum_probs=20.6
Q ss_pred CCCcccCCCCCceeeeeccceeeecCceeeeecCccccccc
Q psy5732 167 DSPLKCSGRRGKINCIAMHGLQNCVRGTCERIRTPYNCDRR 207 (454)
Q Consensus 167 ~~p~kcs~~rgki~c~~lnG~f~C~~~~C~kI~~py~CDR~ 207 (454)
+||..|+. +.|.|.+|+| |-..+-||..
T Consensus 1 g~p~~C~~-----------~~f~C~~g~C--I~~~~~CDg~ 28 (45)
T d1d2la_ 1 GSPPQCQP-----------GEFACANSRC--IQERWKCDGD 28 (45)
T ss_dssp CCCCBTTB-----------TCEEETTTEE--ECGGGTTTSS
T ss_pred CcCCcCCC-----------CCeEcCCCCe--EChhhhCcCc
Confidence 56777765 7899999987 5556777754
No 8
>d2axtf1 f.23.38.1 (F:11-45) Cytochrome b559 subunit beta, PsbF {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=15.78 E-value=9.1 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=19.7
Q ss_pred hHHhhhheeecchhhHHHHHhheeeEE
Q psy5732 380 TYREFMIGFFVPCILLIVSCLTLILCQ 406 (454)
Q Consensus 380 t~~~li~a~~VP~vlFviS~i~L~~~~ 406 (454)
..+--+++++||.+.|+-|....=++|
T Consensus 8 vrwlavh~l~vptvfFlGai~aMqfiq 34 (35)
T d2axtf1 8 VRWVAVHTLAVPTIFFLGAIAAMQFIQ 34 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred eehhhhhhcccchhhhHhHHHHHHHhh
Confidence 344568899999999988876654443
No 9
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.02 E-value=20 Score=26.04 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=11.9
Q ss_pred cCCcceEEEEeccc
Q psy5732 412 GDDAKMRFKKKGEA 425 (454)
Q Consensus 412 GdDakMr~~~c~~~ 425 (454)
-+||.+||.+|.+.
T Consensus 8 neDA~lrC~gCdgd 21 (54)
T d2d8va1 8 NEDATLRCAGCDGD 21 (54)
T ss_dssp CSCCCEEETTTTSE
T ss_pred cCCCceEecCCCCc
Confidence 48999999999665
No 10
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=12.95 E-value=29 Score=27.02 Aligned_cols=59 Identities=15% Similarity=0.287 Sum_probs=36.7
Q ss_pred cccCCCCCccceEEEeeCCeeeeecchhhhhccccccccccccCCCeEEEeeeeee-cCCCceeeccccCcccccCCccC
Q psy5732 206 RRCVDIPTRNKNVIVLSGDRVYLSQCQKAVLLNNTEQEIWTEDQNNILMASCFNVN-NTSRGIEALDCINGSVLDRSALT 284 (454)
Q Consensus 206 R~C~dI~t~~~Nv~l~~gD~v~~~~C~~av~~~~~~~eiW~e~~~~vlm~SC~~i~-~~~~~i~a~DCiNGsLl~~~~l~ 284 (454)
++|+-+.|.-++|+++.+|+-+...+.+++ ++.... ..+-.|.-.|-.+|.+|=+.+|.
T Consensus 8 ~~c~~latavv~lY~~~~~~~W~~~~tG~v--------------------~~v~d~~~~~~~l~v~d~~~~~vi~e~eI~ 67 (114)
T d1mkea1 8 KKCVTMSSAVVQLYAADRNCMWSKKCSGVA--------------------CLVKDNPQRSYFLRIFDIKDGKLLWEQELY 67 (114)
T ss_dssp CCCEEEEEEEEEEEEEETTTEEEEEEEEEE--------------------EEEEETTTTEEEEEEECSSSCSEEEEEECC
T ss_pred CCcceeeeEEEEEEEECCCCeEEECCceEE--------------------EEEEECCCCeEEEEEEECCCCeEEEEEEcc
Confidence 567777788888888777666555555542 111111 12345666777777888777774
Done!