RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5732
(454 letters)
>gnl|CDD|217411 pfam03185, CaKB, Calcium-activated potassium channel, beta subunit.
Length = 201
Score = 32.4 bits (74), Expect = 0.30
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 8/63 (12%)
Query: 49 PYMRAVQSGIDTSPVMCTTTRAVIIET---CTWGSCGEWCLSKTSGACAQIYVSLRHNGS 105
PY+++V T CT I + C++ +CG C + C Q++V+L H+G
Sbjct: 40 PYLQSVW----TEEANCTVLNTNITDEWFNCSF-TCGSDCRGVSQYPCLQVFVNLSHSGR 94
Query: 106 NLL 108
L
Sbjct: 95 RAL 97
>gnl|CDD|225271 COG2407, FucI, L-fucose isomerase and related proteins
[Carbohydrate transport and metabolism].
Length = 470
Score = 32.1 bits (73), Expect = 0.68
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 85 CLSKTSGACAQI--YVSLRHNGSNLLFVNCTNSANKTCYGIDQENAKKYRCI--ADECKN 140
LS A + YV L +C NS + Y + +K CI C
Sbjct: 308 YLSGKPQLFADVRKYVD----EDELGLFHCGNSGSSALYSAVRTEFEKAACIGATVWCPA 363
Query: 141 LTGTF 145
G +
Sbjct: 364 GFGAY 368
>gnl|CDD|224142 COG1221, PspF, Transcriptional regulators containing an AAA-type
ATPase domain and a DNA-binding domain [Transcription /
Signal transduction mechanisms].
Length = 403
Score = 29.3 bits (66), Expect = 4.6
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 307 RQIAPPEQDLLLANESRLLINLEGCVNTLRDECKEFLR------EFGKDGTDHNARARFP 360
+ + P + L + LI + LR++ K + G+ GT AR
Sbjct: 62 QALLPQARPYLKSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLI 121
Query: 361 CFYSEKIPGTVIARFNLSETYRE 383
S + FN +
Sbjct: 122 HALSARRAEAPFIAFNCAAYSEN 144
>gnl|CDD|217359 pfam03081, Exo70, Exo70 exocyst complex subunit. The Exo70 protein
forms one subunit of the exocyst complex. First
discovered in S. cerevisiae, Exo70 and other exocyst
proteins have been observed in several other eukaryotes,
including humans. In S. cerevisiae, the exocyst complex
is involved in the late stages of exocytosis, and is
localised at the tip of the bud, the major site of
exocytosis in yeast. Exo70 interacts with the Rho3
GTPase. This interaction mediates one of the three known
functions of Rho3 in cell polarity: vesicle docking and
fusion with the plasma membrane (the other two functions
are regulation of actin polarity and transport of
exocytic vesicles from the mother cell to the bud). In
humans, the functions of Exo70 and the exocyst complex
are less well characterized: Exo70 is expressed in
several tissues and is thought to also be involved in
exocytosis.
Length = 357
Score = 29.2 bits (66), Expect = 5.0
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 16/96 (16%)
Query: 270 LDCINGSVLDRSALTDLTNFTFLNYLNIYNATILDKDR---------------QIAPPEQ 314
D + S + S ++ + L L A R P+
Sbjct: 19 CDEVFSSSIRESCFAEIAQESILQLLKFGEAVASKNKRSPEKLFELLDMYEALSELLPDL 78
Query: 315 DLLLANESRLLIN-LEGCVNTLRDECKEFLREFGKD 349
D L + E+ + + L + L + + EF
Sbjct: 79 DALFSGEAGSVRSELNELLKRLGETARSIFEEFESL 114
>gnl|CDD|200504 cd11243, Sema_7A, The Sema domain, a protein interacting module, of
semaphorin 7A (Sema7A, also called CD108). Sema7A plays
regulatory roles in both immune and nervous systems.
Unlike other semaphorins, which act as repulsive
guidance cues, Sema7A enhances central and peripheral
axon growth and is required for proper axon tract
formation during embryonic development. Sema7A also
plays a critical role in the negative regulation of T
cell activation and function. Sema7A is a
membrane-anchored member of the semaphorin family of
proteins. Semaphorins are regulatory molecules in the
development of the nervous system and in axonal
guidance. They also play important roles in other
biological processes, such as angiogenesis, immune
regulation, respiration systems and cancer. The Sema
domain is located at the N-terminus and contains four
disulfide bonds formed by eight conserved cysteine
residues. It serves as a receptor-recognition and
-binding module.
Length = 414
Score = 29.0 bits (65), Expect = 5.1
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 67 TTRAVIIETCTWGSCGEWCLSKTSGACAQIYVSLRHNGSNLLFVNCTNSANKTCY 121
T AVI++ + C + + + Y++L L V TN+ + C+
Sbjct: 30 TGSAVIVKKIPDEKTEKDCKKRATLDDCENYITLIKKLDYRLLVCGTNAGSPKCW 84
>gnl|CDD|187594 cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR),
involved in Type II FAS, classical (c) SDRs. This
subgroup includes the Escherichai coli K12 BKR, FabG.
BKR catalyzes the NADPH-dependent reduction of ACP in
the first reductive step of de novo fatty acid synthesis
(FAS). FAS consists of four elongation steps, which are
repeated to extend the fatty acid chain through the
addition of two-carbo units from malonyl acyl-carrier
protein (ACP): condensation, reduction, dehydration, and
a final reduction. Type II FAS, typical of plants and
many bacteria, maintains these activities on discrete
polypeptides, while type I FAS utilizes one or two
multifunctional polypeptides. BKR resembles enoyl
reductase, which catalyzes the second reduction step in
FAS. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet) NAD(P)(H) binding
region and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H) binding
pattern: TGxxxGxG in classical SDRs. Extended SDRs have
additional elements in the C-terminal region, and
typically have a TGXXGXXG cofactor binding motif.
Complex (multidomain) SDRs such as ketoreductase domains
of fatty acid synthase have a GGXGXXG NAD(P) binding
motif and an altered active site motif (YXXXN). Fungal
type type ketoacyl reductases have a TGXXXGX(1-2)G
NAD(P)-binding motif. Some atypical SDRs have lost
catalytic activity and/or have an unusual NAD(P) binding
motif and missing or unusual active site residues.
Reactions catalyzed within the SDR family include
isomerization, decarboxylation, epimerization, C=N bond
reduction, dehydratase activity, dehalogenation,
Enoyl-CoA reduction, and carbonyl-alcohol
oxidoreduction. A critical catalytic Tyr residue
(Tyr-151, human 15-hydroxyprostaglandin dehydrogenase
(15-PGDH) numbering), is often found in a conserved
YXXXK pattern. In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) or additional
Ser, contributing to the active site. Substrates for
these enzymes include sugars, steroids, alcohols, and
aromatic compounds. The standard reaction mechanism is a
proton relay involving the conserved Tyr-151 and
Lys-155, and well as Asn-111 (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 240
Score = 28.7 bits (65), Expect = 5.6
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NLTG FN TQ G INI+
Sbjct: 108 NLTGVFNVTQAVIRAMIKRRSGRIINIS 135
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 28.4 bits (64), Expect = 6.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 370 TVIARFNLSETYREF---MIGFFVPCILLIVSCLTLI 403
T R + E + +G +P I+ ++S L LI
Sbjct: 168 TWDLRVSKFELFSSLVLLNLGSLLPFIVFLISFLLLI 204
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 29.0 bits (65), Expect = 6.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 196 ERIRTPYNCDRRCVDIPTRNKNVIVLSGDRVYLSQCQKAVLLNNTEQE 243
ER R PY C + R+ V V R Y Q A++L +Q+
Sbjct: 83 ERSRVPYTC------VKGRDDTVNVQIRGRNYTPQEISAMILQKLKQD 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,211,631
Number of extensions: 2075900
Number of successful extensions: 1505
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1503
Number of HSP's successfully gapped: 20
Length of query: 454
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 354
Effective length of database: 6,502,202
Effective search space: 2301779508
Effective search space used: 2301779508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.4 bits)