RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5732
(454 letters)
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 35.9 bits (83), Expect = 0.025
Identities = 20/114 (17%), Positives = 35/114 (30%), Gaps = 24/114 (21%)
Query: 273 INGSV-LDRSALTDLTNFTFLN--YLNIYNATILDKDRQIAPPEQDLLLANE---SRLLI 326
++G L TD L+ L I+ + Q DL ++ S+L I
Sbjct: 44 LSGFAELSLDWFTDNKAPLILDTRDLVIHRVMAKNSQGQWVKVNYDLAKRDDVLGSKLTI 103
Query: 327 NLEGCVNTLR------DECKE--FLREFGKDGTDH----------NARARFPCF 362
N +R ++ +L G + +AR+ P
Sbjct: 104 NTPLNAKKVRVYYNSTEKATGLQWLSAEQTAGKEKPFLFSQNQAIHARSWIPIQ 157
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.048
Identities = 31/194 (15%), Positives = 57/194 (29%), Gaps = 67/194 (34%)
Query: 175 RRGKINCIAMHGLQNCVRGTCE-------RIRTPYNCDRRCVDIPTRNKNVIVLSGDRVY 227
++ K + I++ + ++ E I YN + D + ++I D+ Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFD----SDDLIPPYLDQ-Y 472
Query: 228 --------LSQCQKA--------VLLNNTEQEIWTEDQNNILMASCFN-VNNTSRGIEAL 270
L + V L+ F + R
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLD-------------------FRFLEQKIRHDSTA 513
Query: 271 DCINGSVLDRSALTDLTNFTFLNYLNIYNATILDKDRQIAPPEQDLLLANESRLLINLEG 330
+GS+L+ L L Y I D D P+ + L+ L +E
Sbjct: 514 WNASGSILN--TLQQL---------KFYKPYICDND-----PKYERLVNAILDFLPKIE- 556
Query: 331 CVNTLRDECKEFLR 344
N + + + LR
Sbjct: 557 -ENLICSKYTDLLR 569
Score = 34.4 bits (78), Expect = 0.084
Identities = 45/382 (11%), Positives = 94/382 (24%), Gaps = 115/382 (30%)
Query: 96 IYVSLRHNGSNLL--FVNCTNSANKTCYGIDQENAKKYR----CIADECKN---LTGTFN 146
++ +L ++ FV + + N Y+ I E + +T +
Sbjct: 67 LFWTLLSKQEEMVQKFVE----------EVLRIN---YKFLMSPIKTEQRQPSMMTRMYI 113
Query: 147 CTQGTCINITDAFECDFRETDSPLK------CSGRRGKINCIAMHGLQNC-----VRGTC 195
+ N F P R K + + G+ C
Sbjct: 114 EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN--VLIDGVLGSGKTWVALDVC 171
Query: 196 ERIRTPYNCDRRCVDIPTRNKNVIVLSGDRVY---LSQCQKAVLLNNTEQEIWTE-DQNN 251
+ V +++ L C + Q++ + D N
Sbjct: 172 ------------------LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN- 212
Query: 252 ILMASCFNVNNTSRGIEALDCINGSVLDRSALTDLTNFTFLNYLNIYNATILD--KDRQI 309
+ + +N I ++ ++ L L Y N +L ++ +
Sbjct: 213 -WTSRSDHSSNIKLRIHSI---------QAELRRL--LKSKPYENCL--LVLLNVQNAKA 258
Query: 310 APPEQDLLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTDHNARARFPCFYSEKIPG 369
++L+ T R K TD + A +
Sbjct: 259 WNA-----FNLSCKILL-------TTRF----------KQVTDFLSAATTTHISLDHHSM 296
Query: 370 TVIARFNLSETYREFMIGFFVPCILLIVSCLTLILCQRT-------VEVGDDAKMR---F 419
T E + + L + E D +
Sbjct: 297 T----LTPDEV-----KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 420 KKKGEAALHMPMDSTLDNIDDA 441
K L ++S+L+ ++ A
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPA 369
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 30.9 bits (71), Expect = 0.70
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
L GTF C+Q G IN+
Sbjct: 114 VLNGTFYCSQAIGKYWIEKGIKGNIINMV 142
>1fvp_A Flavoprotein 390, FP390; flavin-binding protein; HET: FMA; 2.70A
{Photobacterium phosphoreum} SCOP: c.1.16.2
Length = 231
Score = 30.4 bits (68), Expect = 0.99
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 293 NYLNIYNATILDKDRQIAPPEQDLLLANESRLLINLEGCVNTLRDECKEFLREFGKDGTD 352
L+ YNA+ ++ I L+L +N+ ++E K ++ +
Sbjct: 105 KLLSFYNASASKYNKNIDLVRHQLML------HVNVNEAETVAKEELKLYIENYVACTQP 158
Query: 353 HNARARFPCFYSEKIPGT 370
N + G+
Sbjct: 159 SNFNGSIDSIIQSNVTGS 176
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 30.3 bits (69), Expect = 1.0
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NLTGTF + G+ +NI
Sbjct: 131 NLTGTFYMCKAVYSSWMKEHGGSIVNII 158
>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain
dehydrogenase, beta- oxidation, NADP, oxidoreductase;
HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB:
1w73_A* 1w8d_A*
Length = 302
Score = 29.5 bits (67), Expect = 1.9
Identities = 6/29 (20%), Positives = 8/29 (27%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
L GT T ++IT
Sbjct: 135 VLNGTAFVTLEIGKQLIKAQKGAAFLSIT 163
>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase,
oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei
brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A*
3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A*
3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A*
3jq6_A* ...
Length = 288
Score = 29.5 bits (67), Expect = 2.0
Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 11/50 (22%)
Query: 140 NLTGTFNCTQGTCINITDAFECDFRETDSPLKCSGRRGKINCIA-MHGLQ 188
N F T +F + T+ I + Q
Sbjct: 147 NAIAPFLLTM--------SFAQRQKGTNPNCT--SSNLSIVNLCDAMVDQ 186
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 29.5 bits (67), Expect = 2.0
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
+ +GTFN ++ G +NIT
Sbjct: 136 DTSGTFNVSRVLYEKFFRDHGGVIVNIT 163
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 29.6 bits (67), Expect = 2.2
Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 36/108 (33%)
Query: 284 TDLTNFTF--------------LN--YLNIYNATILDKDRQIAPPEQDLLLANES---RL 324
D+ TF L+ L I + +D Q + +S ++
Sbjct: 12 FDIQKRTFNGTETITADAGDIVLDAVGLQINWMKVNGRDTAFTYDGQTVRAPGDSQPQKI 71
Query: 325 LINLEGCVNTLRDECKEFLREFGKDGTDHN----------ARARFPCF 362
I+ G + D L G ++ AR FPC
Sbjct: 72 EISFAG---KVSDS----LSGIYYAGRENGMITTHFEATDARRMFPCV 112
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 29.8 bits (66), Expect = 2.4
Identities = 15/150 (10%), Positives = 34/150 (22%), Gaps = 6/150 (4%)
Query: 76 CTWGS------CGEWCLSKTSGACAQIYVSLRHNGSNLLFVNCTNSANKTCYGIDQENAK 129
C S CG +G C+ + L+ L A + C ID+
Sbjct: 299 CRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDP 358
Query: 130 KYRCIADECKNLTGTFNCTQGTCINITDAFECDFRETDSPLKCSGRRGKINCIAMHGLQN 189
C +G ++ + + + +
Sbjct: 359 DTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 418
Query: 190 CVRGTCERIRTPYNCDRRCVDIPTRNKNVI 219
+ + + ++ +I
Sbjct: 419 LIPNLRNVVALDTEVASNRIYWSDLSQRMI 448
>3cbc_A Neutrophil gelatinase-associated lipocalin; siderocalin, NGAL,
enterobactin, glycoprotein, pyrroli carboxylic acid,
secreted; HET: DBS; 2.17A {Homo sapiens} PDB: 3hwg_A*
3hwf_A* 3hwe_A* 3u03_A* 3u0d_A* 3cmp_A* 3i0a_A* 3hwd_A
3t1d_A* 3by0_A*
Length = 198
Score = 28.9 bits (64), Expect = 2.8
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 336 RDECKEFLREFGKDGTDHNARARFPCFYSEKIPGTVIARFNLSETYREFMIGFFVPCILL 395
+ +C ++R F Y V +S Y + + F +
Sbjct: 93 KKKCDYWIRTFVPGSQPGEFTLGNIKSYPGLTSFLVRV---VSTNYNQHAM-VFFKKVSQ 148
Query: 396 IVSCLTLILCQRTVEVGDDAKMRFKK 421
+ L RT E+ + K F +
Sbjct: 149 NREYFKITLYGRTKELTSELKENFIR 174
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 29.0 bits (66), Expect = 2.9
Identities = 5/27 (18%), Positives = 8/27 (29%), Gaps = 10/27 (37%)
Query: 140 NLTGTFNCTQ----------GTCINIT 156
L + ++ G INI
Sbjct: 106 GLKAPYELSRLCRDELIKNKGRIINIA 132
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 29.0 bits (66), Expect = 3.1
Identities = 6/26 (23%), Positives = 10/26 (38%), Gaps = 9/26 (34%)
Query: 140 NLTGTFNCTQ---------GTCINIT 156
NLTG+F + G+ +
Sbjct: 111 NLTGSFLVARKAGEVLEEGGSLVLTG 136
>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.45A
{Sinorhizobium meliloti}
Length = 260
Score = 28.7 bits (65), Expect = 3.4
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
N+ G F+ TQ G ++IT
Sbjct: 127 NVAGFFHITQRAAAEMLKQGSGHIVSIT 154
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 28.6 bits (65), Expect = 3.4
Identities = 5/28 (17%), Positives = 8/28 (28%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
N C Q G ++I+
Sbjct: 113 NAKALLFCAQEAAKLMEKNGGGHIVSIS 140
>3rih_A Short chain dehydrogenase or reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: PG5; 2.15A {Mycobacterium
abscessus}
Length = 293
Score = 28.7 bits (65), Expect = 3.9
Identities = 6/28 (21%), Positives = 8/28 (28%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
N+ GT Q G I +
Sbjct: 150 NVKGTVYTVQACLAPLTASGRGRVILTS 177
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 28.6 bits (65), Expect = 4.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
NLTG F ++ GT IN++
Sbjct: 116 NLTGAFLGSREAIKYFVENDIKGTVINMS 144
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 28.2 bits (64), Expect = 4.7
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
N+ F + G IN+T
Sbjct: 113 NVDSGFLMAKAFVPGMKRNGWGRIINLT 140
>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain
dehydrogenase/reductase, 4-pyridoxola NAD+,
oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti}
PDB: 3ndr_A* 3nug_A*
Length = 247
Score = 28.2 bits (64), Expect = 4.9
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
NLTGTF T+ G I+I
Sbjct: 111 NLTGTFIVTRAGTDQMRAAGKAGRVISIA 139
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 28.3 bits (64), Expect = 5.0
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
NL GTF TQ G+ INI+
Sbjct: 123 NLKGTFLVTQAAAQALVSNGCRGSIINIS 151
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 28.3 bits (64), Expect = 5.3
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL F TQ G INI+
Sbjct: 152 NLNSLFYITQPISKRMINNRYGRIINIS 179
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 27.9 bits (63), Expect = 6.1
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NLTG+F + G+ +
Sbjct: 108 NLTGSFLVAKAASEAMREKNPGSIVLTA 135
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics,
southeast collaboratory for structural genomics, secsg,
PSI; 1.90A {Clostridium thermocellum}
Length = 247
Score = 27.8 bits (63), Expect = 6.2
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL + CT+ G INIT
Sbjct: 114 NLKSAYLCTKAVSKIMLKQKSGKIINIT 141
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 27.9 bits (63), Expect = 6.6
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 9/26 (34%)
Query: 140 NLTGTFNCTQ---------GTCINIT 156
NLT F + G + +
Sbjct: 118 NLTSLFLTAKTALPKMAKGGAIVTFS 143
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 27.9 bits (63), Expect = 6.6
Identities = 10/31 (32%), Positives = 11/31 (35%), Gaps = 14/31 (45%)
Query: 140 NLTGTFNCTQ--------------GTCINIT 156
NL GT TQ + INIT
Sbjct: 140 NLRGTVFFTQAVLKAMLASDARASRSIINIT 170
>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol
metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP:
c.2.1.2
Length = 265
Score = 27.9 bits (63), Expect = 7.0
Identities = 5/29 (17%), Positives = 10/29 (34%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
N+ G FN + G+ + +
Sbjct: 123 NVFGVFNTCRAVAKLWLQKQQKGSIVVTS 151
>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol,
chiral alcohol, oxidoreductase; HET: NAD; 2.00A
{Agrobacterium tumefaciens}
Length = 263
Score = 27.9 bits (63), Expect = 7.2
Identities = 6/29 (20%), Positives = 7/29 (24%), Gaps = 12/29 (41%)
Query: 140 NLTGTFNCTQ------------GTCINIT 156
N G F Q G +N
Sbjct: 117 NARGVFLANQIACRHFLASNTKGVIVNTA 145
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 27.9 bits (63), Expect = 7.3
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL G CT+ G +N +
Sbjct: 120 NLDGALWCTRAVYKKMTKRGGGAIVNQS 147
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 27.5 bits (62), Expect = 7.4
Identities = 5/28 (17%), Positives = 5/28 (17%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
F G I IT
Sbjct: 104 LQIRPFALVNAVASQMKKRKSGHIIFIT 131
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.5 bits (62), Expect = 7.4
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
N+ GTF Q G + +
Sbjct: 119 NVNGTFYAVQACLDALIASGSGRVVLTS 146
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 27.8 bits (63), Expect = 7.4
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NLTG F CTQ G INI
Sbjct: 110 NLTGVFLCTQAATKIMMKKRKGRIINIA 137
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 27.5 bits (62), Expect = 7.5
Identities = 2/29 (6%), Positives = 8/29 (27%), Gaps = 11/29 (37%)
Query: 140 NLTGTFNCTQ-----------GTCINITD 157
++ + ++I+D
Sbjct: 129 HMLAPYLINLHCEPLLTASEVADIVHISD 157
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 27.5 bits (62), Expect = 7.7
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NLTGTF TQ G +NI+
Sbjct: 116 NLTGTFLVTQNSLRKMIKQRWGRIVNIS 143
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 27.5 bits (62), Expect = 7.8
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL G F C++ G INI
Sbjct: 137 NLGGVFLCSRAAAKIMLKQRSGRIINIA 164
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 27.4 bits (62), Expect = 8.5
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL G F CT+ G +NI
Sbjct: 113 NLKGVFLCTKAVSRFMMRQRHGRIVNIA 140
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
csgid, center for structural genomics O infectious
diseases; 1.90A {Staphylococcus aureus subsp} PDB:
3sj7_A*
Length = 246
Score = 27.4 bits (62), Expect = 8.6
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL G FNC Q G IN++
Sbjct: 113 NLKGVFNCIQKATPQMLRQRSGAIINLS 140
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 27.6 bits (62), Expect = 8.7
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 140 NLTGTFNCTQGTCINITDAFECDFRETDSPLKCSGRRGKI 179
NL G+FN + I +T+ + RG I
Sbjct: 114 NLVGSFNVLRLAAERIA--------KTEPVGPNAEERGVI 145
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 27.4 bits (62), Expect = 8.8
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
NL+ F T+ G +NIT
Sbjct: 111 NLSAVFRTTREAVKLMMKARFGRIVNIT 138
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome,
connective tissue, extracellular matrix, structural
protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
Length = 86
Score = 25.7 bits (57), Expect = 9.3
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 136 DECKNLTGTFNCTQGTCINITDAFECD 162
DEC C +G C+N FEC
Sbjct: 4 DEC--RISPDLCGRGQCVNTPGDFECK 28
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 27.1 bits (61), Expect = 9.8
Identities = 4/28 (14%), Positives = 5/28 (17%), Gaps = 11/28 (39%)
Query: 140 NLTGTFNCTQ-----------GTCINIT 156
Q + I IT
Sbjct: 106 LSIFPILLLQSAIAPLRAAGGASVIFIT 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.428
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,842,634
Number of extensions: 405221
Number of successful extensions: 950
Number of sequences better than 10.0: 1
Number of HSP's gapped: 921
Number of HSP's successfully gapped: 115
Length of query: 454
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 357
Effective length of database: 3,993,456
Effective search space: 1425663792
Effective search space used: 1425663792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.4 bits)