RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5732
         (454 letters)



>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 24.4 bits (53), Expect = 4.6
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 136 DECKNLTGTFNCTQGTCINITDAFEC 161
           DEC        C +G C+N    FEC
Sbjct: 4   DEC--RISPDLCGRGQCVNTPGDFEC 27


>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 42

 Score = 24.4 bits (53), Expect = 5.2
 Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 2/26 (7%)

Query: 136 DECKNLTGTFNCTQGTCINITDAFEC 161
           DEC        C  G C N   ++ C
Sbjct: 3   DEC--QRDPLLCRGGVCHNTEGSYRC 26


>d2jdid2 b.49.1.1 (D:10-81) F1 ATP synthase beta subunit, domain 1
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 72

 Score = 24.6 bits (54), Expect = 7.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 154 NITDAFECDFRETDSPLKCSGRRG--KINCIAMHGLQNCVRGT 194
            I +A E   RET   L+ +   G   +  IAM G +  VRG 
Sbjct: 22  PILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQ 64


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,704,884
Number of extensions: 81075
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 19
Length of query: 454
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 366
Effective length of database: 1,199,356
Effective search space: 438964296
Effective search space used: 438964296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.7 bits)