BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5734
(205 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KNC|A Chain A, Structure Of Ahpd From Mycobacterium Tuberculosis, A Novel
Enzyme With Thioredoxin-Like Activity.
pdb|1KNC|B Chain B, Structure Of Ahpd From Mycobacterium Tuberculosis, A Novel
Enzyme With Thioredoxin-Like Activity.
pdb|1KNC|C Chain C, Structure Of Ahpd From Mycobacterium Tuberculosis, A Novel
Enzyme With Thioredoxin-Like Activity
Length = 177
Score = 30.4 bits (67), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 115 LYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFVGAKFFPNVKGCGYPPYLNC 174
++ R R + G D L P N + P IP+ N W F + GC + C
Sbjct: 83 VFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFA----VSAINGCSH-----C 133
Query: 175 SIFHKK-YAVVGKQYPCYYSTVEPALVI 201
+ H+ VG + ++ A ++
Sbjct: 134 LVAHEHTLRTVGVDREAIFEALKAAAIV 161
>pdb|1GU9|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|F Chain F, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|I Chain I, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|K Chain K, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
pdb|1GU9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd
Length = 177
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 115 LYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFVGAKFFPNVKGCGYPPYLNC 174
++ R R + G D L P N + P IP+ N W F + GC + C
Sbjct: 83 VFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFA----VSAINGCSH-----C 133
Query: 175 SIFHKK-YAVVGKQYPCYYSTVEPALVI 201
+ H+ VG + ++ A ++
Sbjct: 134 LVAHEHTLRTVGVDREAIFEALKAAAIV 161
>pdb|1LW1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H137f Mutant
pdb|1LW1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H137f Mutant
pdb|1LW1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H137f Mutant
Length = 177
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 115 LYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFVGAKFFPNVKGCGYPPYLNC 174
++ R R + G D L P N + P IP+ N W F + GC + C
Sbjct: 83 VFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFA----VSAINGCSH-----C 133
Query: 175 SI-FHKKYAVVGKQYPCYYSTVEPALVI 201
+ F VG + ++ A ++
Sbjct: 134 LVAFEHTLRTVGVDREAIFEALKAAAIV 161
>pdb|1ME5|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H132q Mutant
pdb|1ME5|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H132q Mutant
pdb|1ME5|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
Alkylperoxidase Ahpd H132q Mutant
Length = 177
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 10/88 (11%)
Query: 115 LYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFVGAKFFPNVKGCGYPPYLNC 174
++ R R + G D L P N + P IP+ N W F + GC C
Sbjct: 83 VFYRGRGFLEGRYDDLRPGLRMNIIANPGIPKANFELWSFA----VSAINGCS-----QC 133
Query: 175 SIFHKK-YAVVGKQYPCYYSTVEPALVI 201
+ H+ VG + ++ A ++
Sbjct: 134 LVAHEHTLRTVGVDREAIFEALKAAAIV 161
>pdb|2A6T|A Chain A, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
pdb|2A6T|B Chain B, Crystal Structure Of S.Pombe Mrna Decapping Enzyme Dcp2p
Length = 271
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 84 REIYECTQITVSYKVSVNTSVQSTITAQSLRLY 116
RE+YE T S +++ N + TI Q++RLY
Sbjct: 147 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLY 179
>pdb|2QKM|B Chain B, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|D Chain D, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|F Chain F, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
pdb|2QKM|H Chain H, The Crystal Structure Of Fission Yeast Mrna Decapping
Enzyme Dcp1-Dcp2 Complex
Length = 266
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 84 REIYECTQITVSYKVSVNTSVQSTITAQSLRLY 116
RE+YE T S +++ N + TI Q++RLY
Sbjct: 142 REVYEETGFDCSSRINPNEFIDMTIRGQNVRLY 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,681,410
Number of Sequences: 62578
Number of extensions: 220972
Number of successful extensions: 404
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 6
length of query: 205
length of database: 14,973,337
effective HSP length: 94
effective length of query: 111
effective length of database: 9,091,005
effective search space: 1009101555
effective search space used: 1009101555
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)