BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5734
         (205 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P48613|TIPE_DROME Protein tipE OS=Drosophila melanogaster GN=tipE PE=2 SV=1
          Length = 452

 Score =  198 bits (503), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 146/265 (55%), Gaps = 64/265 (24%)

Query: 1   MAEEAGKESSREKLLFYTTAFFILLAIFSLFGFLFLVPFVIEPACTTIMREFDEVPATCE 60
           M +E  K + +EKLLFYTTAFFILL  FSLF FLFLVPFVIEPA TTI  +F+EVPA CE
Sbjct: 1   MGDEQDKRTGKEKLLFYTTAFFILLGTFSLFAFLFLVPFVIEPAFTTIFMQFEEVPALCE 60

Query: 61  TIQVENLRGASNCSWTSCREGCTREIYECTQITVSYKVSV-NTSVQSTITAQSLRLY--- 116
           T   E   GA NCSW+SCREGCT++IY CTQI V+Y++++ N + +   T   + L    
Sbjct: 61  TYDTEIYYGAKNCSWSSCREGCTKDIYTCTQIRVNYRLNLYNFTDEFNFTEYHINLKEAE 120

Query: 117 ---------NRFRRAVL--------------------------------GEDDVLLPSFE 135
                    +R+ RA+                                 G +  L+   E
Sbjct: 121 RILPPVKRTDRYERALRSDYEYDNLGGGTGLDIDLGAGRMEQLNFGDADGSNGYLIEDSE 180

Query: 136 DN----------------FLETPAIPEG---NSSEWDFVGAKFFPNVKGCGYPPYLNCSI 176
           D                 F E   + EG   N S + +VGA+ FPNVKGCGYPP LNC+I
Sbjct: 181 DTRGLSASGTLISDERRPFDEISELNEGLMGNRSMYYYVGARLFPNVKGCGYPPMLNCTI 240

Query: 177 FHKKYAVVGKQYPCYYSTVEPALVI 201
           + K+Y  +G ++PCYYS V+P+LVI
Sbjct: 241 WLKRYTKIGMKFPCYYSKVDPSLVI 265


>sp|Q05318|L_EBOZM RNA-directed RNA polymerase L OS=Zaire ebolavirus (strain Mayinga-76)
            GN=L PE=3 SV=2
          Length = 2212

 Score = 30.4 bits (67), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 33/79 (41%)

Query: 96   YKVSVNTSVQSTITAQSLRLYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFV 155
            YK+ ++    S + A  L+++      +L  +D L P F   +L  P      SSEW   
Sbjct: 1944 YKLILHHIDPSVLKAVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLC 2003

Query: 156  GAKFFPNVKGCGYPPYLNC 174
               F    +   +  +L+C
Sbjct: 2004 LTNFLSTTRKMPHQNHLSC 2022


>sp|Q6V1Q2|L_EBOZ5 RNA-directed RNA polymerase L OS=Zaire ebolavirus (strain Kikwit-95)
            GN=L PE=3 SV=1
          Length = 2212

 Score = 30.4 bits (67), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 19/79 (24%), Positives = 33/79 (41%)

Query: 96   YKVSVNTSVQSTITAQSLRLYNRFRRAVLGEDDVLLPSFEDNFLETPAIPEGNSSEWDFV 155
            YK+ ++    S + A  L+++      +L  +D L P F   +L  P      SSEW   
Sbjct: 1944 YKLILHHIDPSVLKAVVLKVFLSDTEGMLWLNDNLAPFFATGYLIKPITSSARSSEWYLC 2003

Query: 156  GAKFFPNVKGCGYPPYLNC 174
               F    +   +  +L+C
Sbjct: 2004 LTNFLSTTRKMPHQNHLSC 2022


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,252,713
Number of Sequences: 539616
Number of extensions: 3011872
Number of successful extensions: 6011
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6005
Number of HSP's gapped (non-prelim): 7
length of query: 205
length of database: 191,569,459
effective HSP length: 112
effective length of query: 93
effective length of database: 131,132,467
effective search space: 12195319431
effective search space used: 12195319431
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)