Query psy5734
Match_columns 205
No_of_seqs 51 out of 53
Neff 3.1
Searched_HMMs 29240
Date Fri Aug 16 16:39:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5734.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5734hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gvb_B VP12.5, KP6 killer toxi 17.0 49 0.0017 24.2 1.2 14 53-66 3-16 (81)
2 1v54_J Cytochrome C oxidase po 14.6 1.9E+02 0.0065 19.8 3.7 24 11-34 27-50 (59)
3 1rpb_A Tricyclic peptide RP 71 12.9 54 0.0019 19.6 0.5 8 162-169 9-16 (26)
4 2y69_J Cytochrome C oxidase po 12.3 2.2E+02 0.0076 20.7 3.7 25 11-35 48-72 (80)
5 2zjs_E Preprotein translocase 12.2 1.3E+02 0.0044 20.0 2.3 24 11-34 24-47 (60)
6 3dl8_C SECE; RECA-type ATPase 12.0 1.6E+02 0.0054 20.0 2.7 24 10-33 22-45 (65)
7 2qjy_C Ubiquinol-cytochrome C 11.8 2E+02 0.0067 23.0 3.6 46 1-51 1-48 (187)
8 3kdp_B Sodium/potassium-transp 10.0 2.3E+02 0.0077 24.7 3.6 35 9-45 14-48 (286)
9 3arc_T Photosystem II reaction 9.6 3.2E+02 0.011 17.0 3.2 20 15-35 4-23 (32)
10 1q90_R Cytochrome B6-F complex 8.7 3.4E+02 0.012 18.0 3.3 11 6-16 10-20 (49)
No 1
>4gvb_B VP12.5, KP6 killer toxin subunit beta; antifungal protein, secreted; 1.80A {Ustilago maydis virus P6}
Probab=16.98 E-value=49 Score=24.20 Aligned_cols=14 Identities=21% Similarity=0.589 Sum_probs=11.2
Q ss_pred ccccceeEEEeeee
Q psy5734 53 DEVPATCETIQVEN 66 (205)
Q Consensus 53 ~~~Pv~C~Tt~~~~ 66 (205)
.|+||||+-++..+
T Consensus 3 rprpvmcqcvdttn 16 (81)
T 4gvb_B 3 RPRPVMCQCVDTTN 16 (81)
T ss_dssp -CCCEEEEEEESSG
T ss_pred CCCceEEEEEecCC
Confidence 48999999888765
No 2
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=14.61 E-value=1.9e+02 Score=19.78 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy5734 11 REKLLFYTTAFFILLAIFSLFGFL 34 (205)
Q Consensus 11 rek~~FYtTa~~~l~av~S~~AfL 34 (205)
-.+++|++|..+.+.++..++-.|
T Consensus 27 sd~~Ly~~t~~l~~~g~~~~~y~l 50 (59)
T 1v54_J 27 TDNILYRVTMTLCLGGTLYSLYCL 50 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeHHHHHHHHHHHHHHHHHHHH
Confidence 356899998888877766554443
No 3
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=12.92 E-value=54 Score=19.63 Aligned_cols=8 Identities=50% Similarity=1.443 Sum_probs=6.5
Q ss_pred cccCCCCC
Q psy5734 162 NVKGCGYP 169 (205)
Q Consensus 162 NvkGCGYP 169 (205)
|-.||||.
T Consensus 9 ~fagcgya 16 (26)
T 1rpb_A 9 DFAGCGYA 16 (26)
T ss_dssp SSSSSCBB
T ss_pred CcCCCceE
Confidence 56799997
No 4
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=12.32 E-value=2.2e+02 Score=20.68 Aligned_cols=25 Identities=16% Similarity=0.101 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5734 11 REKLLFYTTAFFILLAIFSLFGFLF 35 (205)
Q Consensus 11 rek~~FYtTa~~~l~av~S~~AfLf 35 (205)
-.+++|++|..+.+.++..++-.|+
T Consensus 48 sd~~Ly~~t~~l~~~G~~~~ly~l~ 72 (80)
T 2y69_J 48 TDNILYRVTMTLCLGGTLYSLYCLG 72 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999998888888765554443
No 5
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=12.22 E-value=1.3e+02 Score=20.05 Aligned_cols=24 Identities=25% Similarity=0.247 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q psy5734 11 REKLLFYTTAFFILLAIFSLFGFL 34 (205)
Q Consensus 11 rek~~FYtTa~~~l~av~S~~AfL 34 (205)
|+.+.=||.+.+.+++++|++.++
T Consensus 24 r~e~~~~t~vViv~v~i~~~~~~~ 47 (60)
T 2zjs_E 24 REQVVEGTQAILLFTLAFMVILGL 47 (60)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888888766543
No 6
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=12.04 E-value=1.6e+02 Score=20.02 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy5734 10 SREKLLFYTTAFFILLAIFSLFGF 33 (205)
Q Consensus 10 ~rek~~FYtTa~~~l~av~S~~Af 33 (205)
-|+.+.-||.+++.+++++|++..
T Consensus 22 tr~e~~~~T~vViv~v~i~~~~i~ 45 (65)
T 3dl8_C 22 SRELVVKATISVIIFSLAIGVYLW 45 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366677889999988888876654
No 7
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=11.80 E-value=2e+02 Score=23.00 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=20.0
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcee--ecchhhhhhcc
Q psy5734 1 MAEEAGKESSREKLLFYTTAFFILLAIFSLFGFLFLVPFV--IEPACTTIMRE 51 (205)
Q Consensus 1 m~~e~~~~t~rek~~FYtTa~~~l~av~S~~AfLfLvp~v--vdPA~~ti~~~ 51 (205)
|.+......-|.+++.++|+..+.++.. ..++||+ ..|+-++..+.
T Consensus 1 m~~~~~~~~~RR~Fl~~~~~~~~~~~a~-----~~~~p~v~~~~p~~~~~a~~ 48 (187)
T 2qjy_C 1 MSNAEDHAGTRRDFLYYATAGAGAVATG-----AAVWPLINQMNPSADVQALA 48 (187)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHH-----HHHHHHHHTTSCCTTTSCCC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHHH-----HHHHHHHHhcCCchhhcccc
Confidence 5553333345677777776654433322 2233433 57776665543
No 8
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=10.02 E-value=2.3e+02 Score=24.71 Aligned_cols=35 Identities=29% Similarity=0.193 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeecchh
Q psy5734 9 SSREKLLFYTTAFFILLAIFSLFGFLFLVPFVIEPAC 45 (205)
Q Consensus 9 t~rek~~FYtTa~~~l~av~S~~AfLfLvp~vvdPA~ 45 (205)
+|-.=++||...-..|+|+|++...++|- .+||-.
T Consensus 14 sW~~IllFYliFY~~La~lFa~~m~v~l~--TLd~~~ 48 (286)
T 3kdp_B 14 SWFKILLFYVIFYGCLAGIFIGTIQVMLL--TISEFK 48 (286)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGS--CSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCcccC
Confidence 56677899999888899999888877763 455543
No 9
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=9.56 E-value=3.2e+02 Score=17.03 Aligned_cols=20 Identities=30% Similarity=0.771 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q psy5734 15 LFYTTAFFILLAIFSLFGFLF 35 (205)
Q Consensus 15 ~FYtTa~~~l~av~S~~AfLf 35 (205)
+=||......++++ .||+.|
T Consensus 4 ~vYt~ll~~tlgii-FFAI~F 23 (32)
T 3arc_T 4 ITYVFIFACIIALF-FFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHH-HHhhhh
Confidence 45776666666665 344433
No 10
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=8.67 E-value=3.4e+02 Score=17.96 Aligned_cols=11 Identities=18% Similarity=0.144 Sum_probs=6.2
Q ss_pred chhhHHHHHHH
Q psy5734 6 GKESSREKLLF 16 (205)
Q Consensus 6 ~~~t~rek~~F 16 (205)
++|.|..++++
T Consensus 10 ~RRqfln~l~~ 20 (49)
T 1q90_R 10 NKRNIMNLILA 20 (49)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 36666665554
Done!