Query psy5734
Match_columns 205
No_of_seqs 51 out of 53
Neff 3.1
Searched_HMMs 13730
Date Fri Aug 16 16:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5734.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5734hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2glia1 g.37.1.1 (A:103-134) F 16.1 20 0.0014 21.2 0.6 9 71-79 2-10 (32)
2 d1v54j_ f.23.4.1 (J:) Mitochon 13.0 1.2E+02 0.0086 19.5 4.0 29 7-35 23-51 (58)
3 d1kqfc_ f.21.1.1 (C:) Formate 12.6 86 0.0062 22.6 3.6 31 5-35 6-36 (216)
4 d1j4na_ f.19.1.1 (A:) Aquapori 10.6 1.2E+02 0.009 22.7 4.1 30 1-30 1-32 (249)
5 d2ayja1 g.41.8.7 (A:1-56) Ribo 10.3 34 0.0025 22.3 0.5 35 40-74 3-37 (56)
6 d1ouoa_ d.4.1.6 (A:) Periplasm 7.7 81 0.0059 24.4 1.9 37 152-191 30-76 (210)
7 d1xhoa_ d.79.1.2 (A:) Chorisma 7.3 2E+02 0.014 20.4 3.8 40 43-99 56-95 (112)
8 d1vqo11 g.41.8.2 (1:1-56) Ribo 7.0 61 0.0044 21.0 0.6 7 165-171 36-42 (56)
9 d1q90d_ f.32.1.1 (D:) Subunit 6.3 1.8E+02 0.013 21.4 3.1 20 21-40 92-111 (156)
10 d2pspa2 g.16.1.1 (A:54-106) Pa 6.2 65 0.0047 20.1 0.4 8 190-197 42-49 (53)
No 1
>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.07 E-value=20 Score=21.17 Aligned_cols=9 Identities=33% Similarity=1.512 Sum_probs=7.3
Q ss_pred CCCcccccc
Q psy5734 71 SNCSWTSCR 79 (205)
Q Consensus 71 ~NCsWsSCr 79 (205)
.||-|-.|.
T Consensus 2 TnChW~~C~ 10 (32)
T d2glia1 2 TDCRWDGCS 10 (32)
T ss_dssp CBCCBTTCC
T ss_pred Ccccccccc
Confidence 589998875
No 2
>d1v54j_ f.23.4.1 (J:) Mitochondrial cytochrome c oxidase subunit VIIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.02 E-value=1.2e+02 Score=19.51 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5734 7 KESSREKLLFYTTAFFILLAIFSLFGFLF 35 (205)
Q Consensus 7 ~~t~rek~~FYtTa~~~l~av~S~~AfLf 35 (205)
++-...+++|-+|..+.+.++...+-.||
T Consensus 23 KGG~~D~~LYr~Tm~L~~~G~~~s~~~l~ 51 (58)
T d1v54j_ 23 KGGATDNILYRVTMTLCLGGTLYSLYCLG 51 (58)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667899999999999888887666555
No 3
>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}
Probab=12.64 E-value=86 Score=22.62 Aligned_cols=31 Identities=16% Similarity=0.285 Sum_probs=26.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5734 5 AGKESSREKLLFYTTAFFILLAIFSLFGFLF 35 (205)
Q Consensus 5 ~~~~t~rek~~FYtTa~~~l~av~S~~AfLf 35 (205)
+++-++.+|++-.+.+++.++.++|++.+.|
T Consensus 6 V~R~~~~~Rl~HW~~a~~~i~L~~TGl~l~~ 36 (216)
T d1kqfc_ 6 IVRTKFIDRACHWTVVICFFLVALSGISFFF 36 (216)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred EEeCCHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4477899999999999999999999887654
No 4
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.62 E-value=1.2e+02 Score=22.74 Aligned_cols=30 Identities=30% Similarity=0.373 Sum_probs=20.2
Q ss_pred CccccchhhHHHHHH--HHHHHHHHHHHHHHH
Q psy5734 1 MAEEAGKESSREKLL--FYTTAFFILLAIFSL 30 (205)
Q Consensus 1 m~~e~~~~t~rek~~--FYtTa~~~l~av~S~ 30 (205)
|+.|-+++.+-++++ |..|.++.+.++.|+
T Consensus 1 m~~~~~~~~~wr~~~aEf~gTfllvf~~~gs~ 32 (249)
T d1j4na_ 1 MASEFKKKLFWRAVVAEFLAMILFIFISIGSA 32 (249)
T ss_dssp CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788877666433332 888988887776554
No 5
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=10.33 E-value=34 Score=22.28 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=31.1
Q ss_pred eecchhhhhhcccccccceeEEEeeeeccCCCCCc
Q psy5734 40 VIEPACTTIMREFDEVPATCETIQVENLRGASNCS 74 (205)
Q Consensus 40 vvdPA~~ti~~~f~~~Pv~C~Tt~~~~~~G~~NCs 74 (205)
|+||+...|...+.-.--+|---.+-+..+..||.
T Consensus 3 i~eP~l~~lA~k~~~~k~ICrkC~AR~p~rAt~CR 37 (56)
T d2ayja1 3 LTDPAKLQIVQQRVFLKKVCRKCGALNPIRATKCR 37 (56)
T ss_dssp SCCSCCSSTTTTCSCCCEEETTTCCEECTTCSSCT
T ss_pred ccCHHHHHHHHHHhhhhHHHhhccccCCccccccc
Confidence 67999999999999999999888888888888886
No 6
>d1ouoa_ d.4.1.6 (A:) Periplasmic endonuclease Vvn {Vibrio vulnificus [TaxId: 672]}
Probab=7.73 E-value=81 Score=24.42 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=25.4
Q ss_pred ccccccEEeecccCCCCCCccchhHHHHh----------hccCCCcceee
Q psy5734 152 WDFVGAKFFPNVKGCGYPPYLNCSIFHKK----------YAVVGKQYPCY 191 (205)
Q Consensus 152 w~~~~a~L~vNvkGCGYPP~vnCs~F~k~----------Y~~~G~~FpCy 191 (205)
|+..+-+..|+.+.|||-|.-+ ..|. -...|..|+|+
T Consensus 30 ~~~~~~~~~~d~~scGy~~~k~---~~Ra~riewEHvvPa~~fg~~~~cw 76 (210)
T d1ouoa_ 30 IEWQGKKGIPNLETCGYQVRKQ---QTRASRIEWEHVVPAWQFGHHRQCW 76 (210)
T ss_dssp EEEETTEEEECTTTTTBCCSSC---HHHHTSEEEEESSCTTTTTTTSHHH
T ss_pred eeecCCcCCcCccCCCcccccc---hhhhhcccceeeeCHHHhCcchhhh
Confidence 4445667789999999998743 4444 24557777774
No 7
>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}
Probab=7.34 E-value=2e+02 Score=20.41 Aligned_cols=40 Identities=10% Similarity=0.185 Sum_probs=30.2
Q ss_pred chhhhhhcccccccceeEEEeeeeccCCCCCccccccccccccccCeeEEEEEeEec
Q psy5734 43 PACTTIMREFDEVPATCETIQVENLRGASNCSWTSCREGCTREIYECTQITVSYKVS 99 (205)
Q Consensus 43 PA~~ti~~~f~~~Pv~C~Tt~~~~~~G~~NCsWsSCrEgCtk~~~~C~QI~Vnyr~~ 99 (205)
||..+=..+++..|.||...=.+. .++-+|+-+.+++..+
T Consensus 56 PA~aaR~lG~~~Vpl~c~~E~~V~-----------------gsL~rcIRvLih~nt~ 95 (112)
T d1xhoa_ 56 PAIAARNMGWTSTALMCMNEIDVP-----------------GSLEKCIRVMMHVNTD 95 (112)
T ss_dssp THHHHHHTTCTTSEEEEEECCCCT-----------------TSCCSEEEEEEEECCS
T ss_pred CHHHHhhcCCCcccccccCCCCCC-----------------CCccceeEEEEEeecC
Confidence 555444569999999998766654 4678999988888654
No 8
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=7.04 E-value=61 Score=20.98 Aligned_cols=7 Identities=29% Similarity=0.928 Sum_probs=5.2
Q ss_pred CCCCCCc
Q psy5734 165 GCGYPPY 171 (205)
Q Consensus 165 GCGYPP~ 171 (205)
-|||||.
T Consensus 36 sCGyg~s 42 (56)
T d1vqo11 36 SCGFGKS 42 (56)
T ss_dssp TTCTTTC
T ss_pred ccCCCcc
Confidence 5999764
No 9
>d1q90d_ f.32.1.1 (D:) Subunit IV of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.33 E-value=1.8e+02 Score=21.37 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHhhhhhcee
Q psy5734 21 FFILLAIFSLFGFLFLVPFV 40 (205)
Q Consensus 21 ~~~l~av~S~~AfLfLvp~v 40 (205)
..++++.+..++.|+++|++
T Consensus 92 l~GVi~~~~~i~~L~~lP~l 111 (156)
T d1q90d_ 92 LLGVLLMAAVPAGLITVPFI 111 (156)
T ss_dssp HHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44566666667778888886
No 10
>d2pspa2 g.16.1.1 (A:54-106) Pancreatic spasmolytic polypeptide {Pig (Sus scrofa) [TaxId: 9823]}
Probab=6.20 E-value=65 Score=20.10 Aligned_cols=8 Identities=13% Similarity=0.754 Sum_probs=5.9
Q ss_pred eeeecCCC
Q psy5734 190 CYYSTVEP 197 (205)
Q Consensus 190 CyYSr~~p 197 (205)
|||++..+
T Consensus 42 Cfyp~~~~ 49 (53)
T d2pspa2 42 CFFPMSVE 49 (53)
T ss_dssp EECCCCGG
T ss_pred CccCCCcc
Confidence 88887654
Done!